Citrus Sinensis ID: 037701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIINVIIL
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHcccccccccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHHHccccEEEEEcccccHHHHHcccccHHHHHHHcccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHccHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccEcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccHHcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHccccHHHEEEHcccccEEEc
Coil and Loop (DISEMBL)
MNPDLYRDAakgeiepfneIAKDELVSIATHEKNTVLHVNIAsqqegervSTEFVEGILEMCPSLllqvndkgdtplhvaakcRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEncpsadhrgpdglTTLHAAVICNAEDVIKLLLEKKKILTrerdrhgwtslhHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRhcpesysivdnrgwnaRHFAMVSLRGGVLKsllenpyvislihgrdkngntpLHVLAAAcrdssyfivpdsdmyeavNKQNTSVEHIVRygypelevipsllIINVIIL
Flexible Loop (DISEMBL)
mnpdlyrdaakgeiepfneIAKDELVSIATHEKNTVLHVniasqqegeRVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILtrerdrhgwtslhhAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPEsysivdnrgwNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGypelevipslliinviil
Low Complexity Region (SEG)
MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDViklllekkkilTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIINVIIL
Disordered region (IsUnstruct)
*****************NEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALH**********VEMVAEILENCPSA*HRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIINVII*
Disordered Region (DISOPRED)
MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIINVIIL
Disordered Region (DISEMBL)
MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIINVIIL
Disordered Region (DISPRO)
*NPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIINVIIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIINVIIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q502K3	1071	Serine/threonine-protein	no	no	0.678	0.226	0.298	6e-15
Q8BZ25	745	Ankyrin repeat and protei	yes	no	0.692	0.332	0.301	7e-14
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.597	0.408	0.291	3e-13
Q8N8A2	993	Serine/threonine-protein	yes	no	0.729	0.262	0.268	8e-13
Q8NB46	1076	Serine/threonine-protein	no	no	0.885	0.294	0.245	1e-12
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.620	0.376	0.294	1e-12
B2RXR6	993	Serine/threonine-protein	no	no	0.729	0.262	0.268	3e-12
Q8BTI7	1076	Serine/threonine-protein	no	no	0.885	0.294	0.242	5e-12
Q8NFD2	765	Ankyrin repeat and protei	no	no	0.578	0.270	0.309	9e-12
Q505D1	1053	Serine/threonine-protein	no	no	0.620	0.210	0.307	2e-11

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 112/261 (42%), Gaps = 18/261 (6%)

Query: 48  ERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGV 107
           +R  +  VE +L    S LL  +     PLHVAA   H   + +L+          E G 
Sbjct: 621 QRGHSRCVELLLSQSASCLLAEHRSKWGPLHVAAANGHSECLRMLLCS--------EGGA 672

Query: 108 DWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVIC 167
           D +     V + E  T L  AV     G  + V  +LE     D +   G T LH   + 
Sbjct: 673 DLVN----VTDAEGQTPLMLAVLG---GHTDCVHLLLERGACPDMKDRRGRTALHRGAVM 725

Query: 168 NAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDR 227
             ED +  LL    +    RD  G ++LH AA  GH++I S +L + D         D  
Sbjct: 726 GREDCLTALLSHN-VSVLSRDFQGRSALHLAASCGHADILSNLLSAADHSQPQDPLTDRH 784

Query: 228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYV 287
           G T  H AA  G+E  +  ++   P   SI +   +   H A+++   G  + LLE+   
Sbjct: 785 GYTPAHWAAYHGHEDCLEVLLELKP--CSIQEGNPFTPLHCALINGHSGSAELLLESSVC 842

Query: 288 ISLIHGRDKNGNTPLHVLAAA 308
            SL++ RD  G TPLH  A A
Sbjct: 843 NSLVNIRDAKGRTPLHAAAVA 863

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.
Danio rerio (taxid: 7955)

>sp|Q8BZ25|ANKK1_MOUSE Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 121/282 (42%), Gaps = 34/282 (12%)

Query: 25  LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCR 84
           LV+   HE  T LH  +A+Q   E V+   V    ++ P        +G TPLHVAA   
Sbjct: 461 LVNAREHEGWTPLH--LAAQNNFENVARLLVSRQADLSPH-----EAEGKTPLHVAAYFG 513

Query: 85  HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEIL 144
           H  +V++L      Q  EL++           +     T LH AV+   +G V  +  +L
Sbjct: 514 HIGLVKLL----SGQGAELDA-----------QQRNLRTPLHLAVE---RGKVRAIQHLL 555

Query: 145 ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHS 204
           +     D     G + LH A     + + K+LL     L   R + GWT LH A Y GH 
Sbjct: 556 KCGALPDALDHSGYSPLHIAAARGKDLIFKMLLRYGASL-ELRTQQGWTPLHLATYKGHL 614

Query: 205 NITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWN 264
            I   + KS  D    L        T LHLAA QG E V+  +++ C  + +  +  GW 
Sbjct: 615 EIIHQLAKSHVD----LDALGSMQWTPLHLAAFQGEEGVMLALLQ-CGANPNAAEQSGWT 669

Query: 265 ARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
             H A+       +  LLE     + IH  +K G TP H+ A
Sbjct: 670 PLHLAVHKGTFLGITHLLE---YGADIHACNKVGWTPAHLAA 708

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 19/233 (8%)

Query: 74  DTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAA 133
           DTPLH A +       ++L++   +       GV+ ++ +L  +N+   TAL+ A   A 
Sbjct: 18  DTPLHTAVR---EGKTDLLLEMIGEHD-----GVE-LKELLAEQNQSGETALYVA---AE 65

Query: 134 KGSVEMVAEILENCPS--ADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHG 191
            G  +MV  ++++  S  A  +  +G    H A       V+ +L+E    L+   D   
Sbjct: 66  YGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSK 125

Query: 192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC 251
            T+LH AA  GH  I   +L    D + A+ + +  G TALH AA  G+  +V+++I   
Sbjct: 126 TTALHTAASQGHGEIVCFLLDKGVD-LAAIARSN--GKTALHSAARNGHTVIVKKLIEKK 182

Query: 252 PESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
               + VD +G  A H A+      ++  L+E     SLI+  D  GNTPLH+
Sbjct: 183 AGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG--SLINSADNKGNTPLHI 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 140/309 (45%), Gaps = 48/309 (15%)

Query: 61  MCPSLLLQVND----------KGDTPLHVAAKCRHPAVVEVLIK-----------FAKKQ 99
           +C  LLL++ D          KG TPL +A    H   V +L++                
Sbjct: 648 LCLRLLLEIADNPEAVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDTVDILGCTAL 707

Query: 100 SRELESGVDWIRWMLL-------VENEEKNTALHEAVQSAAKGSVEMVAEIL------EN 146
            R + +G +    MLL        ++    T LH A   AA+G    ++E+L      E+
Sbjct: 708 HRGIMTGHEECVQMLLEQEVSILCKDSRGRTPLHYA---AARGHATWLSELLQMALSEED 764

Query: 147 CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNI 206
           C   D++G    T LH A     E+ I++LLE+K    R+   + +T LH A    H N 
Sbjct: 765 CCFKDNQG---YTPLHWACYNGNENCIEVLLEQKCF--RKFIGNPFTPLHCAIINDHGNC 819

Query: 207 TSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNAR 266
            S++L + D  IV+    DD+G T LH AA   +   ++ ++RH     + VDN G  A 
Sbjct: 820 ASLLLGAIDSSIVSC--RDDKGRTPLHAAAFADHVECLQLLLRH-SAPVNAVDNSGKTAL 876

Query: 267 HFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEA- 325
             A  + + G +  L+ +      +  +DK+ NTPLH+  +   +    ++ D    E+ 
Sbjct: 877 MMAAENGQAGAVDILVNSAQADLTV--KDKDLNTPLHLACSKGHEKCALLILDKIQDESL 934

Query: 326 VNKQNTSVE 334
           +N++N +++
Sbjct: 935 INEKNNALQ 943

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q8NB46|ANR52_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Homo sapiens GN=ANKRD52 PE=1 SV=3

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 146/359 (40%), Gaps = 42/359 (11%)

Query: 5   LYRDAAKGEIEPFNEIAKDEL-VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCP 63
           L+  A  G  E    +A+  + + +  H+  T L +        ER STE VE +     
Sbjct: 589 LHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLAT------ERGSTECVEVLTAHGA 642

Query: 64  SLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQS-RELESGVDWIRWMLLVENEEKN 122
           S L++   +  TPLH AA   H   + +LI   ++    ++         ML + N    
Sbjct: 643 SALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLAIMN---- 698

Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI 182
                       G V+ V  +LE   +AD     G T LH   +   ED +  LL+    
Sbjct: 699 ------------GHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAF 746

Query: 183 LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
           +   RD  G T +H A+  GH+ +   +L++           D  G + +H A+  G+E 
Sbjct: 747 VLC-RDFKGRTPIHLASACGHTAVLRTLLQAALSTDPLDAGVDYSGYSPMHWASYTGHED 805

Query: 243 VVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL 302
            +  ++ H P SY  ++   +   H A+++ +    + LL       +++ RD  G TPL
Sbjct: 806 CLELLLEHSPFSY--LEGNPFTPLHCAVINNQDSTTEMLL-GALGAKIVNSRDAKGRTPL 862

Query: 303 HVLAAACRDSSYFI-------VPDSD-------MYEAVNKQNTSVEHIVRYGYPELEVI 347
           H  A A   S   +       V  +D       M  A N Q  +VE ++  G  +L V+
Sbjct: 863 HAAAFADNVSGLRMLLQHQAEVNATDHTGRTALMTAAENGQTAAVEFLLYRGKADLTVL 921

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 122/241 (50%), Gaps = 19/241 (7%)

Query: 74  DTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDW------IRWMLLVE-NEEKNTALH 126
           DT LH+AA+    A V+ ++K    Q   + SG ++      IR  ++ E NE   TAL 
Sbjct: 75  DTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETALF 134

Query: 127 EAVQSAAKGSVEMVAEILENCP--SADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT 184
            A   A KG +++V E+L+     S   +   G   LH A I     ++++LL+    L+
Sbjct: 135 TA---ADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLS 191

Query: 185 RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVV 244
           +       T L  AA  GH+ + + +L S+   ++ + + +++   ALHLAA QG+  V+
Sbjct: 192 QTFGPSNATPLVSAAMRGHTEVVNQLL-SKAGNLLEISRSNNK--NALHLAARQGHVEVI 248

Query: 245 RRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE-NPYVISLIHGRDKNGNTPLH 303
           + ++   P+    +D +G  A H A+      V+K LL+ +P   +++   DK+ NT LH
Sbjct: 249 KALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADP---AIVMQPDKSCNTALH 305

Query: 304 V 304
           V
Sbjct: 306 V 306

Arabidopsis thaliana (taxid: 3702)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 48/309 (15%)

Query: 61  MCPSLLLQVND----------KGDTPLHVAAKCRHPAVVEVLIK-----------FAKKQ 99
           +C  LLL+  D          KG TPL +A    H   V +L++                
Sbjct: 648 LCLRLLLETADNPEVVDVKDAKGQTPLMLAVAYGHIDAVSLLLEKEANVDAVDIVGCTAL 707

Query: 100 SRELESGVDWIRWMLL-------VENEEKNTALHEAVQSAAKGSVEMVAEIL------EN 146
            R + +G +    MLL        ++    T LH A   AA+G    + E+L      E+
Sbjct: 708 HRGIMTGHEECVQMLLEQEASILCKDSRGRTPLHYA---AARGHATWLNELLQIALSEED 764

Query: 147 CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNI 206
           C   D++G    T LH A     E+ I++LLE+K    R+   + +T LH A   GH + 
Sbjct: 765 CCLKDNQG---YTPLHWACYNGNENCIEVLLEQKCF--RKFIGNPFTPLHCAIINGHESC 819

Query: 207 TSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNAR 266
            S++L + D  IV+    DD+G T LH AA   +   ++ ++RH     + VDN G  A 
Sbjct: 820 ASLLLGAIDPSIVSC--RDDKGRTTLHAAAFGDHAECLQLLLRH-DAQVNAVDNSGKTAL 876

Query: 267 HFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEA- 325
             A  + + G +  L+ +      +  +DK+ NTPLH+  +   +    ++ D    E+ 
Sbjct: 877 MMAAENGQAGAVDILVNSAQADLTV--KDKDLNTPLHLAISKGHEKCALLILDKIQDESL 934

Query: 326 VNKQNTSVE 334
           +N +N++++
Sbjct: 935 INAKNSALQ 943

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q8BTI7|ANR52_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Mus musculus GN=Ankrd52 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 146/359 (40%), Gaps = 42/359 (11%)

Query: 5   LYRDAAKGEIEPFNEIAKDEL-VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCP 63
           L+  A  G  E    +A+  + + +  H+  T L +        ER STE VE +     
Sbjct: 589 LHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLAT------ERGSTECVEVLTAHGA 642

Query: 64  SLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQS-RELESGVDWIRWMLLVENEEKN 122
           S L++   +  TPLH AA   H   + +LI   ++    ++         ML + N    
Sbjct: 643 SALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLAIMN---- 698

Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI 182
                       G V+ V  +LE   +AD     G T LH   +   ED +  LL+    
Sbjct: 699 ------------GHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAF 746

Query: 183 LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
           +   RD  G T +H A+  GH+ +   +L++           D  G + +H A+  G+E 
Sbjct: 747 VLC-RDFKGRTPIHLASACGHTAVLRTLLQAALSTDPLDAGVDYSGYSPMHWASYTGHED 805

Query: 243 VVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL 302
            +  ++ H P SY  ++   +   H A+++ +    + LL       +++ RD  G TPL
Sbjct: 806 CLELLLEHSPFSY--LEGNPFTPLHCAVINNQDSTTEMLL-GALGAKIVNSRDAKGRTPL 862

Query: 303 HVLAAACRDSSYFI-------VPDSD-------MYEAVNKQNTSVEHIVRYGYPELEVI 347
           H  A A   S   +       V  +D       M  A + Q  +VE ++  G  +L V+
Sbjct: 863 HAAAFADNVSGLRMLLQHQAEVNATDHTGRTALMTAAESGQTAAVEFLLYRGKADLTVL 921

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 108/236 (45%), Gaps = 29/236 (12%)

Query: 72  KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS 131
           +G TPLHVAA   H ++V++L      Q  EL++           +     T LH AV+ 
Sbjct: 493 EGKTPLHVAAYFGHVSLVKLLTS----QGAELDA-----------QQRNLRTPLHLAVE- 536

Query: 132 AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRH- 190
             +G V  +  +L++    D     G   LH A       + K+LL     L  E   H 
Sbjct: 537 --RGKVRAIQHLLKSGAVPDALDQSGYGPLHTAAARGKYLICKMLLRYGASL--ELPTHQ 592

Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
           GWT LH AAY GH  I  ++ +S  + + AL   +    T LHLAA  G E VV  +++ 
Sbjct: 593 GWTPLHLAAYKGHLEIIHLLAESHAN-MGALGAVN---WTPLHLAARHGEEAVVSALLQ- 647

Query: 251 CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
           C    +  +  GW   H A+       + +LLE+    + +H R+K G TP H+ A
Sbjct: 648 CGADPNAAEQSGWTPLHLAVQRSTFLSVINLLEHH---ANVHARNKVGWTPAHLAA 700

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 128/276 (46%), Gaps = 54/276 (19%)

Query: 67  LQVNDKGDTPLHVAAKCRHPAVVEVLI-KFAKKQSRELESGVDWIRWMLLVENEEKNTAL 125
            Q N+K  TPLH AA      ++E+LI   A+  +++        +W+         T L
Sbjct: 36  FQDNEK-RTPLHAAAYLGDAEIIELLILSGARVNAKD-------SKWL---------TPL 78

Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-----AAVICNAEDVIKLLLEKK 180
           H AV S ++ +V++   +L++    + R  +  T LH      AV C AE ++ LL    
Sbjct: 79  HRAVASCSEEAVQI---LLKHSADVNARDKNWQTPLHIAAANKAVKC-AESLVPLLSN-- 132

Query: 181 KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY 240
                  DR G T+LHHAA+ GH  +  ++L S    I A  K+D R   A+H AA  G+
Sbjct: 133 ---VNVSDRAGRTALHHAAFSGHGEMVKLLL-SRGANINAFDKKDRR---AIHWAAYMGH 185

Query: 241 ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKN--- 297
             VV+ ++ H  E  +  D + +   H A  S    V+K LL+         G D N   
Sbjct: 186 IEVVKLLVSHGAE-VTCKDKKSYTPLHAAASSGMISVVKYLLD--------LGVDMNEPN 236

Query: 298 --GNTPLHVLAAACRDSSYFIVPD-SDMYEAVNKQN 330
             GNTPLHV   AC +    +V +  D    VN++N
Sbjct: 237 AYGNTPLHV---ACYNGQDVVVNELIDCGANVNQKN 269

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
255585399	575	ankyrin repeat-containing protein, putat	0.840	0.523	0.396	4e-58
224127079	394	predicted protein [Populus trichocarpa]	0.972	0.883	0.363	8e-57
224145572	395	predicted protein [Populus trichocarpa]	0.966	0.875	0.370	5e-56
224127106	575	predicted protein [Populus trichocarpa]	0.974	0.606	0.356	6e-56
255551947	582	ankyrin repeat-containing protein, putat	0.910	0.560	0.359	5e-55
224127098	399	predicted protein [Populus trichocarpa]	0.966	0.867	0.362	7e-53
224127104	405	predicted protein [Populus trichocarpa]	0.966	0.854	0.362	1e-52
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.837	0.470	0.359	2e-43
296085927	611	unnamed protein product [Vitis vinifera]	0.837	0.490	0.375	5e-42
297745200	579	unnamed protein product [Vitis vinifera]	0.918	0.568	0.352	2e-41

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/338 (39%), Positives = 192/338 (56%), Gaps = 37/338 (10%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+ DLY+ A  G+I+PF   A   L  + T  K+T+LH+N+AS  E    ST FV+  L+
Sbjct: 27  MSLDLYKAAEDGKIDPFKNFA-GPLDLLVTPIKDTILHLNLASPSER---STSFVKEALD 82

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
           MCP +LLQ+N  GDT LH+AA+  H  +V++LI+  + Q ++LES  + +R ML + N+ 
Sbjct: 83  MCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTRAQHQDLESAGEAVRQMLRMTNKS 142

Query: 121 KNTALHEAVQ-------------------------------SAAKGSVEMVAEILENCPS 149
           K TALHEA +                               ++ +G +E+V  +L+ C S
Sbjct: 143 KETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEVVVIMLKACTS 202

Query: 150 ADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSM 209
             + GP+G T LHAA +     ++  +L+KK  L  + D  GWT LH+AAY+G S +   
Sbjct: 203 LAYGGPNGKTALHAAAMHRHGGIVHAILDKKTSLVNKADEMGWTPLHYAAYIGASRVVKQ 262

Query: 210 MLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFA 269
           +L    DK VA   +  R  TALHLAA Q   + +R II  CP+   +VDNRGWN  H+A
Sbjct: 263 LLGY--DKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCCKLVDNRGWNVAHYA 320

Query: 270 MVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
           ++S     LK LL NP  I L++ +D  GNTPLH+LAA
Sbjct: 321 VISKSDDALKILLANPSCIYLVNEKDAQGNTPLHLLAA 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 144/396 (36%), Positives = 207/396 (52%), Gaps = 48/396 (12%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+P L++ A  G I PF E  +  L  + T ++NT+LHV + +Q   E  ST+FV+  LE
Sbjct: 1   MDPVLFKAAEAGNIGPF-ENYQTSLNQLLTADENTILHVYLKNQS-SEPESTDFVDKFLE 58

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
            CP LL Q N +G+TPLH+AA+  H  VV+VLI  AK    + ESGV   + ML + NEE
Sbjct: 59  RCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALPADPESGVTKAKMMLRMTNEE 118

Query: 121 KNTALHEAVQSAAKGSVEMVAE-------------------------------------- 142
           ++TALHEA ++     VE++ +                                      
Sbjct: 119 QDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGKVVDG 178

Query: 143 ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG 202
           IL NC S D+ GPDG T LHAA +    +  + +LEK+K LT+  D +GW+ LH+A+Y  
Sbjct: 179 ILGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGWSPLHYASYCD 238

Query: 203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRG 262
            SN   + +  E D   A   E ++  TALH+AA QG+   ++ I+  CP    +VDNRG
Sbjct: 239 WSNAPIVEVLLEYDASAASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVDNRG 298

Query: 263 WNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS---YFIVPD 319
           WNA H+A+ S    V K  L+ P +  L   +D  GNTP H++AA   +     Y +  D
Sbjct: 299 WNALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRYVLFND 358

Query: 320 SDMYE-----AVNKQNTSVEHIVRYGYPELEVIPSL 350
           S+ Y       +NK+  SV  I    + E++VI  L
Sbjct: 359 SNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQVINPL 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 206/399 (51%), Gaps = 53/399 (13%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M P LY+ A  G I PF +     L  + T +KNT+LHV + +Q++G + ST+FV  I++
Sbjct: 1   MEPKLYKAAEAGNINPFKDRLPTSLNELLTPKKNTILHVYLENQRKGSK-STDFVGQIID 59

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
           MCP LLLQ N KG+ PLH AA+     VV VLI  AK +  +LESGV   + ML + NEE
Sbjct: 60  MCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKARPTDLESGVTEAKKMLRMTNEE 119

Query: 121 KNTALHEAVQSAAKGSVEM----------------------------------------- 139
           K+TALH A ++     VE+                                         
Sbjct: 120 KDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKRHEENRKK 179

Query: 140 -VAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHA 198
            + EIL NC S ++ G  G T LHAA +    +  + +LE+   LTR  D  GW+ LH+A
Sbjct: 180 VINEILSNCKSVEYCGSHGRTALHAAGMYGDHETTRKILERDASLTRRTDDDGWSPLHYA 239

Query: 199 AYLG---HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESY 255
            +     HS  T  +L   D  + A Y  D    TALHLAAS+G       I+  CP S 
Sbjct: 240 VFFRDFVHSVSTVEVLLEHD--VSAAYIVDSEKRTALHLAASRGTWAAAIAIMNTCPASC 297

Query: 256 SIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYF 315
            +VD+RGWNA H+A ++ +G +  S    P    LI+ +D +GNTPLH+ AA       F
Sbjct: 298 ELVDSRGWNALHYAAITRKGHIRFSRWI-PKFDKLIYEKDNDGNTPLHLFAAFGNFPQMF 356

Query: 316 IVPD-SDMYE---AVNKQNTSVEHIVRYGYPELEVIPSL 350
           +  D    Y+    +NKQN SV+ I+R  +P+ +VIPS+
Sbjct: 357 LRSDWRHAYKKMCGLNKQNLSVDDILRGHFPQKKVIPSI 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 205/398 (51%), Gaps = 49/398 (12%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+P L++ A  G I PF       L  + T ++NT+LHV + +Q   E  ST+FV+  LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPDENTILHVYLKNQS-SEPESTDFVDKFLE 59

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
            CP LL Q N +G+TPLH+ A+  H  VV+VLI  AK    + ESGV   + ML + NEE
Sbjct: 60  RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADPESGVTKAKMMLRMTNEE 119

Query: 121 KNTALHEAVQSAAKGSVEMVAE-------------------------------------- 142
           ++TALHEA ++     VE++ +                                      
Sbjct: 120 QDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGKVVDG 179

Query: 143 ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG 202
           IL NC S D+ GPDG T LHAA +    +  + +LEK+K LT+  D +GW+ LH+A+Y  
Sbjct: 180 ILGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGWSPLHYASYCD 239

Query: 203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRG 262
            SN   + +  E D   A   E ++  TALH+AA QG+   ++ I+  CP    +VDNRG
Sbjct: 240 WSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVDNRG 299

Query: 263 WNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS---YFIVPD 319
           WNA H+A+ S    V K  L+ P +  L   +D  GNTP H++AA   +     Y +  D
Sbjct: 300 WNALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRYVLFND 359

Query: 320 SDMYE-----AVNKQNTSVEHIVRYGYPEL--EVIPSL 350
           S+ Y       +NK+  SV  I    + E+  E++ SL
Sbjct: 360 SNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQKEILESL 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/364 (35%), Positives = 201/364 (55%), Gaps = 38/364 (10%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+ +LY+ A +  I    + AKD  + + T +KNT+LH+++ S     + S +FV+  L+
Sbjct: 51  MDAELYKAAVEENINSLKKYAKDLDLQV-TPKKNTILHIHLNSPN---KRSVDFVKEALQ 106

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
           +CPSLL + N  GD PLH+AA+  H  +V++L++ AK Q+ +LE+G   ++ M  ++NE+
Sbjct: 107 LCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLLEQAKAQNEDLETGRGAMKQMWQMQNEK 166

Query: 121 KNTALHEAVQ-------------------------------SAAKGSVEMVAEILENCPS 149
           K+ ALHEA +                               +AA+G + +V EIL  C S
Sbjct: 167 KDMALHEAARNNHLSVVRLLTRLDPHFLYPANDYEETPLYLAAARGYLYVVIEILNTCKS 226

Query: 150 ADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSM 209
             + GP G T LH AV+     ++  +L+++K LT E + +GWT LH+AAY    N  + 
Sbjct: 227 VAYGGPKGKTALHGAVLSGNRGIVLEILKREKRLTIEAEENGWTPLHYAAYGNDQNFGAY 286

Query: 210 MLKS---EDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNAR 266
           ++     E DK  A   + DR  TALHLAA +G  R+++ II  CP+   I D+RGWN  
Sbjct: 287 VIVQRLLECDKSAAYVVDKDRKRTALHLAACRGNVRIMKEIISKCPDCCEIADDRGWNVL 346

Query: 267 HFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAV 326
           H+A+VS     L+ +L N  +I L++ RD  GNTPLH+LA +      F+    D   A 
Sbjct: 347 HYAVVSKNDEALQVILRNSSLIDLVNDRDAQGNTPLHLLAVSRPYLPSFVFDGEDDLNAF 406

Query: 327 NKQN 330
            KQN
Sbjct: 407 YKQN 410

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 207/397 (52%), Gaps = 51/397 (12%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+P L++ AA+G+I+PF E  +  L  + T ++NT+LHV + +Q   E   T+FV  ILE
Sbjct: 7   MDPVLFKAAAEGDIDPF-EKYQTCLDQLLTPDENTILHVYLGNQSR-EPELTDFVVIILE 64

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
           MCP LL Q N KG+ PLH+AA   H  VV+VLI  AK    + ESGV   + ML + NEE
Sbjct: 65  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRMTNEE 124

Query: 121 KNTALHEAVQSAAKGSVEMVAE-------------------------------------I 143
           ++TALHEA +      VE++ +                                     I
Sbjct: 125 QDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGKVVDGI 184

Query: 144 LENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA-YLG 202
           L NC S D+ GP+G T L+AA+    ++  + LLEK+K LT+  D +GW+ LHHAA Y  
Sbjct: 185 LGNCISVDYGGPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLHHAACYDW 244

Query: 203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRG 262
              I  ++L  E+D   A   E ++  TALH+AA QG+   ++ I+  CP    +VDNRG
Sbjct: 245 SPRIVQVLL--ENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCELVDNRG 302

Query: 263 WNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYF---IVPD 319
           WNA H+A+ S         L+ P +  L   +D  GNTP H++AA       +   +  D
Sbjct: 303 WNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQRVLFND 362

Query: 320 SDMYE------AVNKQNTSVEHIVRYGYPELEVIPSL 350
           S  Y        +NK+  SV+ I    + E++VI  L
Sbjct: 363 SYGYSGREIRCGLNKRQLSVDDIYEGNFAEIQVINPL 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 207/397 (52%), Gaps = 51/397 (12%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+P L++ AA+G+I+PF E  +  L  + T ++NT+LHV + +Q   E   T+FV  ILE
Sbjct: 13  MDPVLFKAAAEGDIDPF-EKYQTCLDQLLTPDENTILHVYLGNQSR-EPELTDFVVIILE 70

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
           MCP LL Q N KG+ PLH+AA   H  VV+VLI  AK    + ESGV   + ML + NEE
Sbjct: 71  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRMTNEE 130

Query: 121 KNTALHEAVQSAAKGSVEMVAE-------------------------------------I 143
           ++TALHEA +      VE++ +                                     I
Sbjct: 131 QDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVVDGI 190

Query: 144 LENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA-YLG 202
           L NC S D+ GP+G T L+AA+    ++  + LLEK+K LT+  D +GW+ LHHAA Y  
Sbjct: 191 LGNCISVDYGGPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLHHAACYDW 250

Query: 203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRG 262
              I  ++L  E+D   A   E ++  TALH+AA QG+   ++ I+  CP    +VDNRG
Sbjct: 251 SPRIVQVLL--ENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCELVDNRG 308

Query: 263 WNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYF---IVPD 319
           WNA H+A+ S         L+ P +  L   +D  GNTP H++AA       +   +  D
Sbjct: 309 WNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQRVLFND 368

Query: 320 SDMYE------AVNKQNTSVEHIVRYGYPELEVIPSL 350
           S  Y        +NK+  SV+ I    + E++VI  L
Sbjct: 369 SYGYSGREIRCGLNKRQLSVDDIYEGNFAEIQVINPL 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 188/359 (52%), Gaps = 59/359 (16%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+  LY  AA G I+   ++++D  V   T  KNTVLH+   + Q G+    +++ G L 
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEDHFVVQLTPNKNTVLHI---AAQFGQLDCVQYILG-LN 102

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
               LLL+ N KGDTPLH AA+  H  VV+ LI  AK+  +E+ESGV   + ++ + NEE
Sbjct: 103 SSSFLLLRPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGVGGDKAIMRMTNEE 162

Query: 121 KNTALHEAVQ-------------------------------SAAKGSVEMVAEILENCPS 149
           +NTALHEAV+                               +A +G  ++V  I+  C S
Sbjct: 163 ENTALHEAVRYHHSEVVKSLTEEDPEFIYGANITGYTLLYMAAERGFEDLVNLIIGTCTS 222

Query: 150 ADHRGPDGLTTLHAAVICNAEDVIKL---------------LLEKKKILTRERDRHGWTS 194
             H G  G T LHAAVI N + +                  LLE K  LT+E D +GW+ 
Sbjct: 223 PAHSGMMGRTALHAAVIRNDQGITYADPSLESRFPCEMTARLLEWKPDLTKEVDENGWSP 282

Query: 195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES 254
           LH AAYLG++ I   +L    DK V      D   TALH+AA++ ++ +V+R++ H P+ 
Sbjct: 283 LHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALHIAANRHHQDIVKRLLSHSPDC 342

Query: 255 YSIVDNRGWNARHFAMVSLR----GGVLK--SLLENPYVISLIHGRDKNGNTPLHVLAA 307
              VD++G N  H A++S R    G + +  SLL   +V  LI+ +D  G+TPLH+LA+
Sbjct: 343 CEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLL---WVTGLINEKDAKGDTPLHLLAS 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 187/344 (54%), Gaps = 44/344 (12%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+  LY  AA G I+   ++++   V   T  KNTVLH+   + Q G+    +++   L 
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEHHFVVQLTPNKNTVLHI---AAQFGQLDCVQYIL-GLH 102

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
              SLLL+ N KGDTPLH AA+  H  VV+ LI  AK+  +E+ESGV   + ++ + NEE
Sbjct: 103 SSSSLLLKPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGVGGDKAIMRMTNEE 162

Query: 121 KNTALHEAVQ-------------------------------SAAKGSVEMVAEILENCPS 149
           +NTALHEAV+                               +A +G  ++V  IL  C S
Sbjct: 163 ENTALHEAVRYHHSEVVKSLTEEDPEFIYGANIAGYTLLYMAAERGFEDLVNLILGTCTS 222

Query: 150 ADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSM 209
             + G  G T LHAAVI N +++   LLE K  LT+E D +GW+ LH AAYLGH+ I   
Sbjct: 223 PSYSGMMGRTALHAAVIRNDQEMTARLLEWKPDLTKEVDENGWSPLHCAAYLGHTAIVEQ 282

Query: 210 MLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFA 269
           +L    DK V      D   TALH+AA++ +  +V+ ++ H P+    VD++G N  H+A
Sbjct: 283 LLDKSPDKSVTYLGLKDSKKTALHIAANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYA 342

Query: 270 MVSLR----GGVL--KSLLENPYVISLIHGRDKNGNTPLHVLAA 307
           ++S +    GG+L   SLL    V  LI+ +D  G+TPLH+LA+
Sbjct: 343 IMSEQFLAAGGILGRNSLLS---VRRLINEKDAKGDTPLHLLAS 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745200|emb|CBI39192.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 198/372 (53%), Gaps = 43/372 (11%)

Query: 1   MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILE 60
           M+ DLY  A+KG I    ++   +L    T + NT+LH+   + Q G+    + V+ ILE
Sbjct: 17  MDADLYTAASKGNISKLEQLEACDLGRQRTPKSNTILHI---AAQFGQ---LDCVKRILE 70

Query: 61  MCP-SLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENE 119
           +   S LL++N KGDTPLH+AA+  H  VVE LI+ A K   E+ESGV   + +L + N+
Sbjct: 71  LTSFSSLLKINLKGDTPLHLAAREGHLTVVEALIQ-AAKPPNEIESGVGVDKTILRMANK 129

Query: 120 EKNTALHEAVQ-------------------------------SAAKGSVEMVAEILENC- 147
           E +TALHEAV+                               +  +G V++V  I+EN  
Sbjct: 130 EGDTALHEAVRYHHPEVVKLLIKEDPQFTYGPNISGGTPIHMAVERGHVDLVQIIIENTR 189

Query: 148 PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNIT 207
            S  + G  G T LHAAVI N +++   LLE K  LT E D++GW+ LH AAY G++ I 
Sbjct: 190 TSPAYSGILGRTALHAAVIRNDQEITTKLLEWKPSLTEEVDQNGWSPLHCAAYFGYTTIV 249

Query: 208 SMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARH 267
             +L ++  K VA         TALHLAA +G++ +V  ++ + P+    VD+ G N  H
Sbjct: 250 RQLL-NKSVKSVAYLGIKPGMQTALHLAAIRGHKDIVDLLLSYYPDCCEQVDDNGKNVLH 308

Query: 268 FAMVSLRGGVLKSLLENP--YVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEA 325
           FAM+  +    +  L+N    V  L++ RD  G+TPLH+LA+   D   F++ D      
Sbjct: 309 FAMMRKQDYYPRMFLQNDGLRVRGLLNERDAQGDTPLHLLASYLIDDENFVLDDKVDKMG 368

Query: 326 VNKQNTSVEHIV 337
           +N +N + + +V
Sbjct: 369 LNNENLTPKDMV 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.695	0.404	0.270	1e-16
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.720	0.411	0.256	2.9e-13
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.737	0.486	0.271	6.4e-13
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.636	0.386	0.282	8.2e-12
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.715	0.447	0.269	1e-11
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.606	0.327	0.270	1.3e-11
ZFIN|ZDB-GENE-071015-4	733	ankk1 "ankyrin repeat and kina	0.689	0.336	0.286	1.8e-11
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.726	0.496	0.264	1.9e-11
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.486	0.254	0.285	2.4e-11
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.645	0.380	0.265	5.3e-11

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 75/277 (27%), Positives = 131/277 (47%)

Query:    35 TVLHVNIASQQEGERVSTEFVEGILEMCP--SLLLQVNDKGDTPLHVAAKCRHPAVVEVL 92
             T LHV  A++     +    V  I E     + +   +  GDT LH A K +H  V   L
Sbjct:   108 TTLHV--AARAGSLNIVEILVRFITESSSYDAFIAAKSKNGDTALHAALKGKHVEVAFCL 165

Query:    93 IKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH 152
             +      S +              +N ++ + L+ AV++   G  E+V ++LE+  S   
Sbjct:   166 VSVKHDVSFD--------------KNNDEASPLYMAVEA---GYHELVLKMLESSSSPSI 208

Query:   153 RGP--DGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLG-HSNITSM 209
                   G + +HAA+  N  D+              R+  G T L + A +G +  I  +
Sbjct:   209 LASMFSGKSVIHAAMKANRRDILGIVLRQDPGLIELRNEEGRTCLSYGASMGCYEGIRYI 268

Query:   210 MLKSEDDKIVA--LYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARH 267
             +  +E DK  +   Y  DD G T +H+AA +G+ R+++  ++HCP+S  +++N+  N  H
Sbjct:   269 L--AEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFH 326

Query:   268 FAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
              A ++ +  V+K LL+      +++ +D NGNTPLH+
Sbjct:   327 VAAIAGKSKVVKYLLKLDEGKRMMNEQDINGNTPLHL 363

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 71/277 (25%), Positives = 127/277 (45%)

Query:    72 KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS 131
             +GD+PLH+AA+  +   V  LI+          +G++ ++ +   +N E  T L+ A ++
Sbjct:   112 RGDSPLHLAARTGNLGKVMELIRAC--------NGIEELKELSSKQNLEGETPLYSAAEN 163

Query:   132 AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHG 191
                  VE + + ++   +A  +  +G    H A      +                D   
Sbjct:   164 GHSLVVEEMLKHMD-LDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLSC 222

Query:   192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC 251
              T+LH AA  GH+++ +++LK+ D  +  + K +  G TALH AA  G+  VV+ +I + 
Sbjct:   223 TTALHTAASQGHTDVVNLLLKT-DSHLAKIAKNN--GKTALHSAARMGHREVVKSLIGND 279

Query:   252 PESYSIVDNRGWNARHFAMVSLRGGVLKSLLE-NPYVISLIHGRDKNGNTPLHVLAAACR 310
                    D +G  A H A+     G++  L++ +P ++S+    D  GNTPLH      R
Sbjct:   280 ASIGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAILSV---EDSKGNTPLHTATNKGR 336

Query:   311 DSSY--FIVPDSDMYEAVNKQ-NTSVEHIVRYGYPEL 344
                    +  D     A+NK  +T+++   + G PEL
Sbjct:   337 IKIVRCLVSFDGINLNAMNKAGDTALDIAEKIGNPEL 373

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 79/291 (27%), Positives = 134/291 (46%)

Query:    65 LLLQVNDK-GDTPLHVAAKCRHP-AVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN 122
             ++ Q+  K  DT LH A +  +   VVE+L K     +RE E     +  +L  +N+   
Sbjct:    18 MMKQLTGKRDDTLLHSAVRHGNKDRVVEILTK-----TRESE-----LNQLLGKQNQSGE 67

Query:   123 TALHEAVQSAAKGSVEMVAEILENCPS---ADHRGPDGLTTLHAAVICNAEDVXXXXXXX 179
             TAL+ A   A  G VE+V E++ NC      + +  +G    H A      DV       
Sbjct:    68 TALYVA---AEYGDVEIVKEMI-NCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEA 123

Query:   180 XXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG 239
                     D    T+LH AA  GH+ + + +L+     +  + K +  G TALH A+  G
Sbjct:   124 HSELAMTVDLSNTTALHTAATQGHTEVVNFLLEL-GSSLAGIAKSN--GKTALHSASRNG 180

Query:   240 YERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGN 299
             + +V++ ++   P     +D +G  A H A+      V++ L++     S I+  D  GN
Sbjct:   181 HVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADR--SSINIADTKGN 238

Query:   300 TPLHVLAAACRDSSYFIVPDSDMYE--AVNKQN-TSVEHIVRYGYPELEVI 347
             T LH+ A   R     ++  ++M +  AVN+   T+++   + G PE+ +I
Sbjct:   239 TALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALI 289

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 70/248 (28%), Positives = 119/248 (47%)

Query:    68 QVNDK-GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDW------IRWMLLVE-NE 119
             QV  +  DT LH+AA+    A V+ ++K    Q   + SG ++      IR  ++ E NE
Sbjct:    68 QVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNE 127

Query:   120 EKNTALHEAVQSAAKGSVEMVAEILE--NCPSADHRGPDGLTTLHAAVICNAEDVXXXXX 177
                TAL  A   A KG +++V E+L+  +  S   +   G   LH A I     +     
Sbjct:   128 LGETALFTA---ADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLL 184

Query:   178 XXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
                   ++       T L  AA  GH+ + + +L S+   ++ + + +++   ALHLAA 
Sbjct:   185 DHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLL-SKAGNLLEISRSNNKN--ALHLAAR 241

Query:   238 QGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE-NPYVISLIHGRDK 296
             QG+  V++ ++   P+    +D +G  A H A+      V+K LL+ +P   +++   DK
Sbjct:   242 QGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADP---AIVMQPDK 298

Query:   297 NGNTPLHV 304
             + NT LHV
Sbjct:   299 SCNTALHV 306

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 80/297 (26%), Positives = 138/297 (46%)

Query:    22 KDEL-VSIATHEKNT-VLHVNIASQQE-GERVSTEFVEGILEMCPSLLLQVNDK-GDTPL 77
             KD+L + +A H  ++ ++   +AS     +R++ E  E    + P +L    DK G+T L
Sbjct:   148 KDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRE---RLNPYVL---RDKYGNTAL 201

Query:    78 HVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSV 137
             H+A + R+  +   L+   +  S               +EN E  ++L+ AV++   G V
Sbjct:   202 HLAIEGRYMEMAASLVNENQNAS--------------FLENNEGISSLYMAVEA---GDV 244

Query:   138 EMVAEILENCPSADHRGP--------DGLTTL-HAAVICNAEDVXXXXXXXXXXXTRERD 188
              +V EIL+   + D  G         +G   L H A+   +  V             ERD
Sbjct:   245 TLVKEILKTAGNNDLEGRNSNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERD 304

Query:   189 RHGWTSLHHAAYLG-HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
               G T L  AA +G +  + +++ +S  +    +Y  D+ G   +H AA  G+ R+V+ I
Sbjct:   305 EEGRTCLSFAASIGFYKGVCNLLDRSTKN----VYVCDEDGSFPIHTAAENGHIRIVKEI 360

Query:   248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
             ++ CP S  +++  G N  H A       ++KSL+ +     L  G+D +GNTPLH+
Sbjct:   361 LKRCPHSKHMLNKLGQNVLHIAAKIGEHNLVKSLMRSDDTKHLGVGQDVDGNTPLHL 417

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 63/233 (27%), Positives = 108/233 (46%)

Query:    72 KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS 131
             +GD+ LH+AA+  + + V+ LI+    + +EL          L  +N E  T L+ A ++
Sbjct:   150 RGDSSLHIAARTGNLSKVKELIRGCGDELKEL----------LSKQNLEGETPLYTAAEN 199

Query:   132 AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHG 191
                  VE + + ++   +A     +G    H A      +V               D   
Sbjct:   200 GHSIVVEEMLKHMD-LETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLAMTTDLSC 258

Query:   192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC 251
              T+LH AA  GH ++ +++L++ D  +  + K +  G TALH AA  G+  VV+ +I   
Sbjct:   259 TTALHTAATQGHIDVVNLLLET-DSNLAKIAKNN--GKTALHSAARMGHVEVVKSLIGKD 315

Query:   252 PESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
             P      D +G  A H A+     G++  L++ P V +++   D  GNTPLH+
Sbjct:   316 PSIGFRTDKKGQTALHMAVKGQNDGIVVELVK-PDV-AVLSVEDNKGNTPLHI 366

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-071015-4 ankk1 "ankyrin repeat and kinase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 77/269 (28%), Positives = 125/269 (46%)

Query:    86 PAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILE 145
             P +V VL KF +  S   + G D     + + + ++ TALH AVQ+   G       +L+
Sbjct:   384 PLIVAVLHKFYEICSLLTDCGAD-----VNLSDGDQWTALHFAVQA---GDDRATRFLLD 435

Query:   146 NCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSN 205
             N   AD +  DG T LH A     E++             +  +   T+LH A+  GH N
Sbjct:   436 NKARADAKEKDGWTPLHLAAQNGHENIVRILLRRLDSVDVQEHQSCRTALHVASIYGHIN 495

Query:   206 ITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA 265
             I  ++L    D    + K+D+   TALHLAA +G+ RVVR ++    +  + VD + +++
Sbjct:   496 IVKLLLNKGAD----IDKQDNNQSTALHLAAEEGHFRVVRLLVNSGAD-VNKVDEQSYSS 550

Query:   266 RHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEA 325
              HFA ++   G+ + LL     I      +KN  T +H+  AA +     I+   +   +
Sbjct:   551 LHFAALNGYTGICRLLLSKG--IDPNSRTNKNW-TAMHL--AALKGHPEIILTLEEHQGS 605

Query:   326 VN---KQNTSVEHIVRYGYPELEVIPSLL 351
             VN   K   +  H+  +   E EV+  LL
Sbjct:   606 VNIQGKNGWTPLHLACHHGQE-EVVTGLL 633

GO:0004672 "protein kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 75/284 (26%), Positives = 127/284 (44%)

Query:    72 KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS 131
             + DTPLH A +       ++L++   +       GV+ ++ +L  +N+   TAL+ A   
Sbjct:    16 RDDTPLHTAVR---EGKTDLLLEMIGEHD-----GVE-LKELLAEQNQSGETALYVA--- 63

Query:   132 AAKGSVEMVAEILENCPS--ADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDR 189
             A  G  +MV  ++++  S  A  +  +G    H A       V           +   D 
Sbjct:    64 AEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDS 123

Query:   190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
                T+LH AA  GH  I   +L    D + A+ + +  G TALH AA  G+  +V+++I 
Sbjct:   124 SKTTALHTAASQGHGEIVCFLLDKGVD-LAAIARSN--GKTALHSAARNGHTVIVKKLIE 180

Query:   250 HCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC 309
                   + VD +G  A H A+      ++  L+E     SLI+  D  GNTPLH+     
Sbjct:   181 KKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG--SLINSADNKGNTPLHIAVRKN 238

Query:   310 R-DSSYFIVPDSDMYE-AVNKQN-TSVEHIVRYGYPELEVIPSL 350
             R +    ++   ++   AVNK   T+++   + G  E  ++P L
Sbjct:   239 RAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHE--IVPLL 280

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 52/182 (28%), Positives = 87/182 (47%)

Query:   125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTL-HAAVICNAEDVXXXXXXXXXXX 183
             L+ AV+  AK +  + A +  + P   +   +G   L HAA+   + D+           
Sbjct:   239 LYLAVE--AKDASLVKAMLGNDGPQRKNLNLEGRKYLAHAALNSLSTDILDVILNEYPSL 296

Query:   184 TRERDRHGWTSLHHAAYLG-HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
               ERD  G T L   A +G H  + +++ +S     V     DD G   +HLA  +G  +
Sbjct:   297 VDERDEEGRTCLSFGASIGYHKGVCNLLNRSRKGVFVC----DDDGSYPIHLAVEKGRIK 352

Query:   243 VVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL 302
             VV+ I + CP S  +++ +G N  H A  S +  +L+ L  +  +  L + +D +GNTPL
Sbjct:   353 VVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQINHLANEKDVDGNTPL 412

Query:   303 HV 304
             H+
Sbjct:   413 HL 414

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 65/245 (26%), Positives = 110/245 (44%)

Query:    68 QVNDK-GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDW----IRWMLLVENEEKN 122
             QV  +  DT LH+AA+    A V+ ++     Q     +G D+     + M  V NE   
Sbjct:    82 QVTGRHNDTELHLAAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTSVVNEVNE 141

Query:   123 TALHEAVQSAAKGSVEMVAEILE--NCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXX 180
                     +A KG++++V E+L      S   +   G   LH A       +        
Sbjct:   142 LGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIVQLLLEHE 201

Query:   181 XXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY 240
                ++   +   T L  AA  GHS + + +L ++D  ++ + + +  G  ALHLAA QG+
Sbjct:   202 PQLSKTVAQSNATPLVSAATRGHSEVVNELL-AKDSSLLEISRSN--GKNALHLAARQGH 258

Query:   241 ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE-NPYVISLIHGRDKNGN 299
               +VR ++   P+     D +G  + H A+  +   V++ LL  +P ++ L    DK GN
Sbjct:   259 VDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVML---PDKFGN 315

Query:   300 TPLHV 304
             T LH+
Sbjct:   316 TVLHI 320

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01200012	annotation not avaliable (394 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0017001601	hypothetical protein (522 aa)			•						0.459
	eugene3.00051263	annotation not avaliable (398 aa)			•						0.445
	fgenesh4_pg.C_LG_I003169	hypothetical protein (278 aa)			•						0.439
	grail3.0022009901	hypothetical protein (328 aa)			•						0.413
	gw1.I.2074.1	annotation not avaliable (128 aa)			•						0.410
	eugene3.00051320	SubName- Full=Auxin-regulated protein-like protein; (261 aa)			•						0.407
	grail3.0022009801	hypothetical protein (109 aa)			•						0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.9 bits (239), Expect = 3e-24
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 8/131 (6%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
           +E+  T LH A      G +E+V  +LEN    + +  DG T LH A      +++KLLL
Sbjct: 4   DEDGRTPLHLAAS---NGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 178 EKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
           EK   +   RD+ G T LH AA  G+ ++  ++LK   D    +   D  G T LHLAA 
Sbjct: 61  EKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGAD----VNARDKDGRTPLHLAAK 115

Query: 238 QGYERVVRRII 248
            G+  VV+ ++
Sbjct: 116 NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.0 bits (221), Expect = 9e-22
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 19/144 (13%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE 127
             ++ G TPLH+AA   H  VV++L          LE+G D     +  ++ +  T LH 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLL----------LENGAD-----VNAKDNDGRTPLHL 46

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A +    G +E+V  +LE     + R  DG T LH A      DV+KLLL+    +   R
Sbjct: 47  AAK---NGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-AR 102

Query: 188 DRHGWTSLHHAAYLGHSNITSMML 211
           D+ G T LH AA  GH  +  ++L
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
            RD  G T LH AA  GH  +  ++L++  D    +  +D+ G T LHLAA  G+  +V+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD----VNAKDNDGRTPLHLAAKNGHLEIVK 57

Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL 305
            ++       +  D  G    H A  +    V+K LL++   ++    RDK+G TPLH+ 
Sbjct: 58  LLLEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA---RDKDGRTPLHLA 113

Query: 306 AAACR 310
           A    
Sbjct: 114 AKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 81.7 bits (202), Expect = 5e-19
 Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 151 DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMM 210
           + R  DG T LH A      +V+KLLLE    +   +D  G T LH AA  GH  I  ++
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 211 LKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAM 270
           L    +K   +   D  G T LHLAA  G   VV+ +++H     +  D  G    H A 
Sbjct: 60  L----EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAA 114

Query: 271 VSLRGGVLKSLL 282
            +    V+K LL
Sbjct: 115 KNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 25/146 (17%)

Query: 32  EKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEV 91
           +  T LH+  ++         E V+ +LE    +  + ++ G TPLH+AAK  H  +V++
Sbjct: 6   DGRTPLHLAASNGHL------EVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKL 58

Query: 92  LIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD 151
           L          LE G D     +   +++ NT LH A +    G++++V  +L++    +
Sbjct: 59  L----------LEKGAD-----VNARDKDGNTPLHLAAR---NGNLDVVKLLLKHGADVN 100

Query: 152 HRGPDGLTTLHAAVICNAEDVIKLLL 177
            R  DG T LH A      +V+KLLL
Sbjct: 101 ARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 20/103 (19%)

Query: 77  LHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGS 136
           LH+AAK  +  +V++L          LE G D       V   + +TALH A   A  G+
Sbjct: 1   LHLAAKNGNLELVKLL----------LEKGAD-------VNLGDTDTALHLA---ARNGN 40

Query: 137 VEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
           +E+V  +LE+    + +  DG T LH A      +++KLLLE 
Sbjct: 41  LEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT 184
           LH A ++   G++E+V  +LE    AD    D  T LH A      +++KLLLE    + 
Sbjct: 1   LHLAAKN---GNLELVKLLLEKG--ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADV- 54

Query: 185 RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDK 217
             +D+ G T+LH AA  G+  I  ++L+   D 
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 64/257 (24%), Positives = 99/257 (38%), Gaps = 39/257 (15%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHEAVQ 130
           G TPLH+        V +++          LE+G D       V   E+   T LH  + 
Sbjct: 47  GKTPLHLYLHYSSEKVKDIV-------RLLLEAGAD-------VNAPERCGFTPLHLYLY 92

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHA--AVICNAEDVIKLLLEKKKILTRERD 188
           +A    ++++  +++     + +   G T LH   +       VI+LLL K        D
Sbjct: 93  NATT--LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG-ADVNALD 149

Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH--LAASQGYERVVRR 246
            +G T L     L   N    +L+   D    +Y  DDR  + LH  L + +   R+VR 
Sbjct: 150 LYGMTPLA--VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRE 207

Query: 247 IIRHCPESYSIVDNRGWNARHFAMV--SLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
           +IR      +  D  G    H      S +  ++  LL        I+ R++ G TPLH 
Sbjct: 208 LIRA-GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA---GISINARNRYGQTPLHY 263

Query: 305 LA-----AACRDSSYFI 316
            A      ACR     I
Sbjct: 264 AAVFNNPRACR---RLI 277

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 161 LHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA 220
           LH A      +++KLLLEK   +         T+LH AA  G+  I  ++L+   D    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 221 LYKEDDRGMTALHLAASQGYERVVRRIIRH 250
               D  G TALHLAA  G   +V+ ++ H
Sbjct: 58  ----DKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.5 bits (125), Expect = 6e-08
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 11/139 (7%)

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAE-----DVIKLLLEKKKIL- 183
            +A+KG  ++V  +L +    + +  DG T LH A +         +V KLLLE    L 
Sbjct: 79  SAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138

Query: 184 -TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
               RD  G T LH AA  G ++I  ++L++  D        +  G+TAL  AA  G   
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD----PNSRNSYGVTALDPAAKNGRIE 194

Query: 243 VVRRIIRHCPESYSIVDNR 261
           +V+ ++        +  N 
Sbjct: 195 LVKLLLDKGLHLSLLKFNL 213

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 7/165 (4%)

Query: 143 ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG 202
            L        R  DG   LH+A     + ++KLLL         +D  G T LH AA  G
Sbjct: 59  KLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAKDADGDTPLHLAALNG 117

Query: 203 HSNITS----MMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIV 258
           +    +     +L      +      D+ G T LH AA  G   +V  ++       +  
Sbjct: 118 NPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSR 176

Query: 259 DNRGWNARHFAMVSLRGGVLKSLLE-NPYVISLIHGRDKNGNTPL 302
           ++ G  A   A  + R  ++K LL+   ++  L    +   N  +
Sbjct: 177 NSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANV 221

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES 254
           LH AA  G+  +  ++L+   D  V L   D    TALHLAA  G   +V+ ++ H    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD--VNLGDTD----TALHLAARNGNLEIVKLLLEHGA-D 53

Query: 255 YSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
            +  D  G  A H A  +    ++K LLE+
Sbjct: 54  VNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 35/252 (13%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQS-------------RELESGVDWIRWML 114
            +N K   PL  A K     ++++LI      S               L+ G+D     +
Sbjct: 63  HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGID-----V 117

Query: 115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIK 174
            +++ E  T LH A++   KG +E +  + E     +    +G   +H A+  N  D+IK
Sbjct: 118 NIKDAELKTFLHYAIK---KGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIK 174

Query: 175 LLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHL 234
           LLLEK       +D +G + LH+AA  G      +++   +  +         G T LH 
Sbjct: 175 LLLEKGAYAN-VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC----KNGFTPLHN 229

Query: 235 AASQGYER-VVRRIIRHCPESYSIVDNRGWNARHFAM-VSLRGGVLKSLLENPYVISLIH 292
           A    + R  +  +I +   S +  D  G    H A+       ++  LL +   IS+  
Sbjct: 230 AII--HNRSAIELLINN--ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI-- 283

Query: 293 GRDKNGNTPLHV 304
            +D  G  P+  
Sbjct: 284 -KDNKGENPIDT 294

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMML 211
           G T LH A I    +++K LLEK   + R  D  G T+LH AA  G+  +  ++L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 23/231 (9%)

Query: 19  EIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLH 78
           EI K  L +   + + T+  V I  + + + +  E  + +L     + ++   KG+T LH
Sbjct: 115 EIFKIILTNRYKNIQ-TIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALH 173

Query: 79  VAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVE 138
            A + +   + E+L+ +    +               + ++  N+ LH AV+   K  V 
Sbjct: 174 YATENKDQRLTELLLSYGANVN---------------IPDKTNNSPLHHAVKHYNKPIVH 218

Query: 139 MVAEILENCPSADHRGPDGLTTLHAAV-ICNAEDVIKLLLEKKKILTRERDRHGWTSLHH 197
           +   +LEN  S D R   G T LH +V  C   D++KLLLE    +  +    G T+LH 
Sbjct: 219 I---LLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275

Query: 198 AAYLGHSNITSMMLK-SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           +  +       ++L+   D   +  YK                   ++  I
Sbjct: 276 S--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNI 324

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 176 LLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA 235
           LLE   I     D +G T LH AA  G   +   +LK      V L   D  G+TAL LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG----VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 46/220 (20%)

Query: 125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT 184
           LH+AV++     V+ +     N    DHR    LT LH  +IC   + + +   K+ I +
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHNVNQPDHRD---LTPLH--IICKEPNKLGM---KEMIRS 92

Query: 185 RERDRHGWT--SLHHAAYLGHSNITSMML-----------------KSEDD----KIVAL 221
             +    +T  ++  A    +  I  ++L                 KS+DD    +I  L
Sbjct: 93  INKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKL 152

Query: 222 Y---------KEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA-RHFAMV 271
                     K+  +G TALH A     +R+   ++ +         ++  N+  H A+ 
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP--DKTNNSPLHHAVK 210

Query: 272 SLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRD 311
                ++  LLEN    +    RDK GNTPLH+    C+D
Sbjct: 211 HYNKPIVHILLENG---ASTDARDKCGNTPLHISVGYCKD 247

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 122 NTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
            TALH+A   A  G +E+V  +LE     +    DG T LH A      +V+KLLL
Sbjct: 2   RTALHKA---AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 21/96 (21%)

Query: 51  STEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWI 110
           + E V+ +LE    + L   D   T LH+AA+  +  +V++L          LE G D  
Sbjct: 9   NLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLL----------LEHGAD-- 53

Query: 111 RWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEN 146
              +  ++++ NTALH A +    G++E+V  +LE+
Sbjct: 54  ---VNAKDKDGNTALHLAAR---NGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 15/185 (8%)

Query: 136 SVEMVAEILENCPSADHRGPDGLTTLHAAVICNAE---DVIKLLLEKKKILTRERDRHGW 192
           +VE V  +L      + RG  G T LH  +  ++E   D+++LLLE    +    +R G+
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA-PERCGF 84

Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH--LAASQGYERVVRRIIRH 250
           T LH   YL ++  T  ++K        +  +D  G T LH  L+      +V+R ++R 
Sbjct: 85  TPLH--LYLYNAT-TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK 141

Query: 251 CPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHGRDKNGNTPLHVLAAA 308
                + +D  G       + S      +L+ L++     + ++  D    + LH    +
Sbjct: 142 -GADVNALDLYGMTPLAVLLKSRNANVELLRLLID---AGADVYAVDDRFRSLLHHHLQS 197

Query: 309 CRDSS 313
            +  +
Sbjct: 198 FKPRA 202

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 158 LTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDK 217
              L  A++  A     LL          RD  G   LH AA  G   I  ++L S  D 
Sbjct: 40  NLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGAD- 98

Query: 218 IVALYKEDDRGMTALHLAASQGYE-----RVVRRIIRHCPESYSIV--DNRGWNARHFAM 270
              +  +D  G T LHLAA  G        V + ++    +       D  G    H+A 
Sbjct: 99  ---VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 271 VSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
           ++    +++ LLE     +  + R+  G T L 
Sbjct: 156 LNGDADIVELLLEAG---ADPNSRNSYGVTALD 185

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 224 EDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFA 269
            D  G T LHLAA  G   +V+ +++      ++ D+ G  A   A
Sbjct: 12  TDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
           G T+LH AA  G   +   +L+   D    + + D+ G TALH+AA  G   V++ ++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD----INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 72 KGDTPLHVAAKCRHPAVVEVLIKF 95
           G+TPLH+AA+  H  VV++L++ 
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 26 VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRH 85
            +   + +T LH  +A++      + E V+ +LE    +  +  D G+T LH+AA+  +
Sbjct: 21 ADVNLGDTDTALH--LAARNG----NLEIVKLLLEHGADVNAKDKD-GNTALHLAARNGN 73

Query: 86 PAVVEVLIK 94
            +V++L++
Sbjct: 74 LEIVKLLLE 82

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 58 ILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKF 95
          +LE  P  L   +  G+TPLH+AAK     +V+ L+K 
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP 38

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02792	631	ankyrin-like protein; Provisional	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.72
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.38
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.37
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.36
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.89
PF13606	30	Ank_3: Ankyrin repeat	98.75
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.74
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.69
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.66
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.65
PF13606	30	Ank_3: Ankyrin repeat	98.63
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.6
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.52
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.46
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.44
KOG0522	560	consensus Ankyrin repeat protein [General function	98.37
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.33
KOG0522	560	consensus Ankyrin repeat protein [General function	98.32
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.31
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.16
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.14
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.12
KOG2384	223	consensus Major histocompatibility complex protein	97.99
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.91
KOG2384	223	consensus Major histocompatibility complex protein	97.78
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.78
KOG0511	516	consensus Ankyrin repeat protein [General function	97.76
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.73
KOG0511	516	consensus Ankyrin repeat protein [General function	97.64
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.76
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.24
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.16
KOG2505	591	consensus Ankyrin repeat protein [General function	95.98
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.37
KOG2505	591	consensus Ankyrin repeat protein [General function	95.18
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.17
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.91
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.54
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.66
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	86.02

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-49  Score=367.53  Aligned_cols=332  Identities=20%  Similarity=0.210  Sum_probs=252.9

Q ss_pred             hhhhcccccCCchhhhhhhhhhc--cceeccCCCceehhhhccccc----------------------------------
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDEL--VSIATHEKNTVLHVNIASQQE----------------------------------   46 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~--~~~~~~~~~t~l~~a~~~~~~----------------------------------   46 (358)
                      ||||.|+..|+.|+|+.|++..+  ....+..|.||||+|+..++.                                  
T Consensus        43 t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (682)
T PHA02876         43 TAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACI  122 (682)
T ss_pred             hHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHH
Confidence            69999999999999999999873  455888899999988833220                                  


Q ss_pred             ---------------------------------cccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHH
Q 037701           47 ---------------------------------GERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLI   93 (358)
Q Consensus        47 ---------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll   93 (358)
                                                       ...+++++|++    .+++++.+|..|.||||+|+..|+.++|++|+
T Consensus       123 ~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~----~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL  198 (682)
T PHA02876        123 HILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE----GGADVNAKDIYCITPIHYAAERGNAKMVNLLL  198 (682)
T ss_pred             HHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                                             00333333333    67888899999999999999999999999999


Q ss_pred             HHHHhhhHhhhcchh------------HHHHH-----------------------------------HHhhcccCCcHHH
Q 037701           94 KFAKKQSRELESGVD------------WIRWM-----------------------------------LLVENEEKNTALH  126 (358)
Q Consensus        94 ~~~~~~~~~~~~~~~------------~~~~~-----------------------------------~~~~~~~~~t~l~  126 (358)
                      ++|++.+.....+.+            .++.+                                   ++..+..|.||||
T Consensus       199 ~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh  278 (682)
T PHA02876        199 SYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLH  278 (682)
T ss_pred             HCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999876432221111            11111                                   1234556888888


Q ss_pred             HHHHHHhCCcH-HHHHHHHhcCCCCCCCCCCCccHHHHHHhcC-cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC-C
Q 037701          127 EAVQSAAKGSV-EMVAEILENCPSADHRGPDGLTTLHAAVICN-AEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG-H  203 (358)
Q Consensus       127 ~a~~~~~~~~~-~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~-~  203 (358)
                      +|+..   +.. ++++.|++.|++++..+..|.||||+|+..| ..+++++|+..|++ .+..+..|.||||+|+..+ +
T Consensus       279 ~Aa~~---~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~  354 (682)
T PHA02876        279 HASQA---PSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRN  354 (682)
T ss_pred             HHHhC---CCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCc
Confidence            88654   554 5888888888888888888888888888887 58888888888877 5677888888888888754 5


Q ss_pred             HHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC-hhHHHHHh
Q 037701          204 SNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR-GGVLKSLL  282 (358)
Q Consensus       204 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll  282 (358)
                      .++++.|++.|.+    ++.++..|.||||+|+..|+.+++++|++.+++. +..+..|.||||+|+..++ ..+++.|+
T Consensus       355 ~~iv~lLl~~gad----in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll  429 (682)
T PHA02876        355 KDIVITLLELGAN----VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALCGTNPYMSVKTLI  429 (682)
T ss_pred             HHHHHHHHHcCCC----CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHHcCCHHHHHHHHH
Confidence            7788888888744    6777888888888888888888888888887764 6778888888888887655 45678888


Q ss_pred             cCccccccccCCCCCCChHHHHHHHhC-CCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeee
Q 037701          283 ENPYVISLIHGRDKNGNTPLHVLAAAC-RDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLII  353 (358)
Q Consensus       283 ~~~~~~~~~~~~~~~g~tpL~~a~~~~-~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  353 (358)
                      ++|   +++|.+|..|+||||+|+..+ ...+ ++|++.|+|++.+|..|.||+++|+.. +  ++++.|+..
T Consensus       430 ~~g---adin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~-~--~~v~~Ll~~  496 (682)
T PHA02876        430 DRG---ANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY-H--GIVNILLHY  496 (682)
T ss_pred             hCC---CCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh-C--CHHHHHHHC
Confidence            888   788888888889999888876 3455 888888888888888888998888763 2  456655543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.6e-48  Score=343.28  Aligned_cols=307  Identities=21%  Similarity=0.206  Sum_probs=226.0

Q ss_pred             CChhhhcccccCCchhhhhhhhhh--ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhH
Q 037701            1 MNPDLYRDAAKGEIEPFNEIAKDE--LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLH   78 (358)
Q Consensus         1 ~~~~L~~A~~~g~~~~~~~ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh   78 (358)
                      |...|..|+..|+++.++.|++.+  .++..+.+|.||||.|+..|+   .+++++|++    .+++++..+..|.||||
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~---~~iv~~Ll~----~Ga~~n~~~~~~~t~L~   73 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGD---AKIVELFIK----HGADINHINTKIPHPLL   73 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCC---HHHHHHHHH----CCCCCCCCCCCCCCHHH
Confidence            456789999999999999999875  356688899999999999999   999999887    57888999999999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCc
Q 037701           79 VAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGL  158 (358)
Q Consensus        79 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~  158 (358)
                      +|+..|+.+++++|+++|++...                       +...     ....++++.|++.|++++.++..|.
T Consensus        74 ~A~~~~~~~iv~~Ll~~g~~~~~-----------------------~~~~-----~~~~~~i~~ll~~g~d~n~~~~~g~  125 (434)
T PHA02874         74 TAIKIGAHDIIKLLIDNGVDTSI-----------------------LPIP-----CIEKDMIKTILDCGIDVNIKDAELK  125 (434)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCc-----------------------chhc-----cCCHHHHHHHHHCcCCCCCCCCCCc
Confidence            99999999999999999876321                       1111     1455677777777777777777777


Q ss_pred             cHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc
Q 037701          159 TTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ  238 (358)
Q Consensus       159 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~  238 (358)
                      ||||+|+..++.+++++|++.|++ .+.++..|.||||+|+..++.+++++|++.|++    ++..+..|.||||+|+..
T Consensus       126 T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~----~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        126 TFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY----ANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             cHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHc
Confidence            777777777777777777777666 455667777777777777777777777777643    555666777777777777


Q ss_pred             CcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhC-CCCc-eee
Q 037701          239 GYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC-RDSS-YFI  316 (358)
Q Consensus       239 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~-~~~~-~~L  316 (358)
                      |+.+++++|++.+++ ++.++..|.||||.|+..+. +.+.+|+. +   ++++.+|..|+||||+|++.+ ...+ ++|
T Consensus       201 g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-~---~~in~~d~~G~TpLh~A~~~~~~~~iv~~L  274 (434)
T PHA02874        201 GDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLIN-N---ASINDQDIDGSTPLHHAINPPCDIDIIDIL  274 (434)
T ss_pred             CCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHHc-C---CCCCCcCCCCCCHHHHHHhcCCcHHHHHHH
Confidence            777777777777655 35666677777777776654 44555552 3   566777777777777777655 3344 777


Q ss_pred             cCCcchHHHHhhCCCchhhHhhhCCCCcccccceeee
Q 037701          317 VPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLII  353 (358)
Q Consensus       317 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  353 (358)
                      ++.|+|++.+|..|+||+++|+......++++.|+..
T Consensus       275 l~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~  311 (434)
T PHA02874        275 LYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIAN  311 (434)
T ss_pred             HHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHh
Confidence            7777777777777777777776532245555555543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.7e-48  Score=340.75  Aligned_cols=309  Identities=12%  Similarity=0.083  Sum_probs=264.5

Q ss_pred             hhhhccc--ccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHH
Q 037701            3 PDLYRDA--AKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHV   79 (358)
Q Consensus         3 ~~L~~A~--~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~   79 (358)
                      +.||.++  ..++.++++.|++.+ +++..+.+|.||||+|+..|+   .+++++|++    .+++++.+|..|.||||+
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~---~eiv~lLL~----~GAdin~~d~~g~TpLh~  111 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINN---NRIVAMLLT----HGADPNACDKQHKTPLYY  111 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCC---HHHHHHHHH----CcCCCCCCCCCCCCHHHH
Confidence            4566655  345678999999998 677799999999999999999   999999887    578899999999999999


Q ss_pred             HHhcC--CcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCC
Q 037701           80 AAKCR--HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDG  157 (358)
Q Consensus        80 A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~  157 (358)
                      |+..+  ..+++++|+++|++.+.              ..+..|.||||.|.    .+..++++.|++.|++++.++..|
T Consensus       112 A~~~~~~~~e~v~lLl~~Gadin~--------------~~d~~g~tpL~aa~----~~~~~vv~~Ll~~gad~~~~d~~G  173 (446)
T PHA02946        112 LSGTDDEVIERINLLVQYGAKINN--------------SVDEEGCGPLLACT----DPSERVFKKIMSIGFEARIVDKFG  173 (446)
T ss_pred             HHHcCCchHHHHHHHHHcCCCccc--------------ccCCCCCcHHHHHH----CCChHHHHHHHhccccccccCCCC
Confidence            98765  47999999999998431              35788999998442    388999999999999999999999


Q ss_pred             ccHHHHHHhcCc--HHHHHHHHHhCCcccccccCCCCCHHHHHHHcC--CHHHHHHHhcCCCcccccccccCCCCCCHHH
Q 037701          158 LTTLHAAVICNA--EDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG--HSNITSMMLKSEDDKIVALYKEDDRGMTALH  233 (358)
Q Consensus       158 ~t~l~~a~~~~~--~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~  233 (358)
                      .||||+|+..++  .+++++|++.|++ .+.+|..|.||||+|+..+  +.+++++|++ +    .+++.++..|.||||
T Consensus       174 ~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g----adin~~d~~G~TpLh  247 (446)
T PHA02946        174 KNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-S----TDVNKQNKFGDSPLT  247 (446)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-C----CCCCCCCCCCCCHHH
Confidence            999999987654  6899999999988 6788999999999999986  7889999985 5    448889999999999


Q ss_pred             HHHHcCc-HHHHHHHHhhCCCC-------------------cccc-cCCCCcHHHHHHHcCChhHHHHHhcCcccccccc
Q 037701          234 LAASQGY-ERVVRRIIRHCPES-------------------YSIV-DNRGWNARHFAMVSLRGGVLKSLLENPYVISLIH  292 (358)
Q Consensus       234 ~a~~~~~-~~~v~~Ll~~~~~~-------------------~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  292 (358)
                      +|+..++ .+++++|++.++..                   ++.. +..|.||||+|+..|+.+++++|++++       
T Consensus       248 ~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~-------  320 (446)
T PHA02946        248 LLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND-------  320 (446)
T ss_pred             HHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC-------
Confidence            9999988 58999999886532                   1111 134779999999999999999999976       


Q ss_pred             CCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeeee
Q 037701          293 GRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIIN  354 (358)
Q Consensus       293 ~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  354 (358)
                         ..|.||||+|+..++..+ ++|+.+|++++.. ..|.||+++|... ++.++++.|+..+
T Consensus       321 ---~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~-~~~~~~~~ll~~~  378 (446)
T PHA02946        321 ---IICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRL-NNPVILSKLMLHN  378 (446)
T ss_pred             ---CccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHc-CCHHHHHHHHhcC
Confidence               257999999999998888 9999999999996 6899999999984 9999999998764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-47  Score=333.26  Aligned_cols=304  Identities=23%  Similarity=0.249  Sum_probs=277.9

Q ss_pred             ChhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      |++||+|++++..+.+++|++.+ .....+..+.+|+|+|+..|.   .++++.|++    .+.+++..|..|.||||.|
T Consensus        89 n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~---~s~L~~Ll~----~~~dvnl~de~~~TpLh~A  161 (929)
T KOG0510|consen   89 NTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGN---YSCLKLLLD----YGADVNLEDENGFTPLHLA  161 (929)
T ss_pred             CchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccch---HHHHHHHHH----hcCCccccccCCCchhhHH
Confidence            67999999999999999999998 566699999999999999999   888888877    4699999999999999999


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHh-----cCCCCCCCCC
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILE-----NCPSADHRGP  155 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~-----~~~~~~~~~~  155 (358)
                      |..++.|..+.|++.|+++.               ..+.+|.+|+|.|+++   +..++++..+.     .+..+|..+.
T Consensus       162 ~~~~~~E~~k~Li~~~a~~~---------------K~~~~~~~~iH~aa~s---~s~e~mEi~l~~~g~~r~~~in~~~n  223 (929)
T KOG0510|consen  162 ARKNKVEAKKELINKGADPC---------------KSDIDGNFPIHEAARS---GSKECMEIFLPEHGYERQTHINFDNN  223 (929)
T ss_pred             HhcChHHHHHHHHhcCCCCC---------------cccCcCCchHHHHHHh---cchhhhhhhhccccchhhcccccccC
Confidence            99999998899999999955               5788999999999776   99999999998     6688999999


Q ss_pred             CCccHHHHHHhcCcHHHHHHHHHhCCccc--------------ccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccc
Q 037701          156 DGLTTLHAAVICNAEDVIKLLLEKKKILT--------------RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVAL  221 (358)
Q Consensus       156 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~--------------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  221 (358)
                      .+.+|||.|+..|+.++++.+++.+....              +..|.+|.||||+|++.|++++++.|+..|++    +
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~----I  299 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS----I  299 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc----c
Confidence            99999999999999999999998876533              23588999999999999999999999999954    8


Q ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHh-hCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCcccccccc---CCCCC
Q 037701          222 YKEDDRGMTALHLAASQGYERVVRRIIR-HCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIH---GRDKN  297 (358)
Q Consensus       222 ~~~~~~g~t~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~---~~~~~  297 (358)
                      +.++.++.||||.|+..|+..+|+-|++ .+....+..|-.|.||||.|++.||..+++.|++.|   +...   ..|..
T Consensus       300 ~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G---A~~~~~~e~D~d  376 (929)
T KOG0510|consen  300 NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG---ALFLNMSEADSD  376 (929)
T ss_pred             cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC---hhhhcccccccC
Confidence            8899999999999999999999999999 666677888999999999999999999999999999   4444   56999


Q ss_pred             CChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHh
Q 037701          298 GNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIV  337 (358)
Q Consensus       298 g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a  337 (358)
                      |+||||+|+.+|+..+ ++|+.+|+++..+|..|.|++++-
T Consensus       377 g~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~~  417 (929)
T KOG0510|consen  377 GNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDTR  417 (929)
T ss_pred             CchhhhHHHHhccHHHHHHHHHcCCceeecccccccccccc
Confidence            9999999999999999 999999999999999999999963

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-46  Score=350.45  Aligned_cols=302  Identities=15%  Similarity=0.091  Sum_probs=257.4

Q ss_pred             hhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAA   81 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~   81 (358)
                      ++|+.|+..|+.+++++|++.+ +++.++..|.||||+|+..|+   .+++++|++    .+++++..+..|.||||+|+
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~---~~iv~~LL~----~Gad~n~~~~~g~t~L~~A~  219 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGN---AKMVNLLLS----YGADVNIIALDDLSVLECAV  219 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC---HHHHHHHHH----CCCCcCccCCCCCCHHHHHH
Confidence            4678889999999999999998 677799999999999999999   999999988    58888999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhhh-----------------------------Hhhhcchh-------------HHHHH------
Q 037701           82 KCRHPAVVEVLIKFAKKQS-----------------------------RELESGVD-------------WIRWM------  113 (358)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~-----------------------------~~~~~~~~-------------~~~~~------  113 (358)
                      ..++.+++++|++.++...                             .....+.+             ....+      
T Consensus       220 ~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad  299 (682)
T PHA02876        220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD  299 (682)
T ss_pred             HcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC
Confidence            9999999998887654321                             11111111             12222      


Q ss_pred             HHhhcccCCcHHHHHHHHHhCC-cHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc-CcHHHHHHHHHhCCcccccccCCC
Q 037701          114 LLVENEEKNTALHEAVQSAAKG-SVEMVAEILENCPSADHRGPDGLTTLHAAVIC-NAEDVIKLLLEKKKILTRERDRHG  191 (358)
Q Consensus       114 ~~~~~~~~~t~l~~a~~~~~~~-~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~-~~~~~v~~Ll~~~~~~~~~~~~~~  191 (358)
                      ++..+..|.||||+|+..   + ..++++.|+..|++++..+..|.||||+|+.. +..+++++|++.|++ .+.++..|
T Consensus       300 in~~d~~g~TpLh~Aa~~---g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G  375 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKN---GYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCD  375 (682)
T ss_pred             CCCcCCCCCCHHHHHHHh---CCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCC
Confidence            234678899999999875   6 68999999999999999999999999999985 578899999999888 67889999


Q ss_pred             CCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCc-HHHHHHHHhhCCCCcccccCCCCcHHHHHH
Q 037701          192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY-ERVVRRIIRHCPESYSIVDNRGWNARHFAM  270 (358)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~  270 (358)
                      .||||+|+..|+.+++++|++.|++    ++..+..|.||||+|+..+. ..++++|++.+.+ ++.+|..|+||||+|+
T Consensus       376 ~TpLh~Aa~~~~~~iv~~Ll~~gad----~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa  450 (682)
T PHA02876        376 KTPIHYAAVRNNVVIINTLLDYGAD----IEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYAC  450 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC----ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHH
Confidence            9999999999999999999999965    67788899999999997665 5678999999876 5899999999999999


Q ss_pred             HcC-ChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCceeecCCcchHH
Q 037701          271 VSL-RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYE  324 (358)
Q Consensus       271 ~~~-~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~~~Ll~~g~~~~  324 (358)
                      ..+ +.+++++|+++|   ++++.+|..|.|||++|+.++. .++.|+..|+++.
T Consensus       451 ~~~~~~~iv~lLl~~G---ad~n~~d~~g~tpl~~a~~~~~-~v~~Ll~~~a~~~  501 (682)
T PHA02876        451 KKNCKLDVIEMLLDNG---ADVNAINIQNQYPLLIALEYHG-IVNILLHYGAELR  501 (682)
T ss_pred             HhCCcHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHhCC-HHHHHHHCCCCCC
Confidence            976 689999999999   9999999999999999998652 2388888888754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.6e-45  Score=332.03  Aligned_cols=317  Identities=15%  Similarity=0.093  Sum_probs=199.2

Q ss_pred             ccCCchhhhhhhhhh--cccee-ccCCCceehhhhcc--ccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcC
Q 037701           10 AKGEIEPFNEIAKDE--LVSIA-THEKNTVLHVNIAS--QQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCR   84 (358)
Q Consensus        10 ~~g~~~~~~~ll~~~--~~~~~-~~~~~t~l~~a~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~   84 (358)
                      +.++.+++++|++.+  +++.. +..|.||||.|+..  ++   .+++++|++    .+++++.+|..|.||||+|+..|
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~---~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~~g  223 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVD---IDILEWLCN----NGVNVNLQNNHLITPLHTYLITG  223 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCC---HHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcC
Confidence            468999999999997  35556 88999999988654  45   678888877    58899999999999999999999


Q ss_pred             Cc--HHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhC----------------------------
Q 037701           85 HP--AVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAK----------------------------  134 (358)
Q Consensus        85 ~~--~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~----------------------------  134 (358)
                      +.  ++|++|+++|++               ++.++..|.||||+|+..+..                            
T Consensus       224 ~~~~eIVklLLe~GAD---------------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~  288 (764)
T PHA02716        224 NVCASVIKKIIELGGD---------------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSY  288 (764)
T ss_pred             CCCHHHHHHHHHcCCC---------------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHH
Confidence            64  899999999998               556888899999987643333                            


Q ss_pred             ------CcHHHHHHHHhcCCCCCCCCCCCccHHHHHHh--cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHH------
Q 037701          135 ------GSVEMVAEILENCPSADHRGPDGLTTLHAAVI--CNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAY------  200 (358)
Q Consensus       135 ------~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~------  200 (358)
                            ++.++++.|++.|++++.++..|.||||+|+.  .++.+++++|++.|++ .+.++..|.||||+|+.      
T Consensus       289 i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~  367 (764)
T PHA02716        289 ITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVN  367 (764)
T ss_pred             HHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhc
Confidence                  44455555555555555555555555555432  2344555555555544 34445555555555443      


Q ss_pred             --------cCCHHHHHHHhcCCCcccccccccCCCCCCHHHHH----HHcCcHHHHHHHHhhCCCCcc-------cccCC
Q 037701          201 --------LGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA----ASQGYERVVRRIIRHCPESYS-------IVDNR  261 (358)
Q Consensus       201 --------~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a----~~~~~~~~v~~Ll~~~~~~~~-------~~~~~  261 (358)
                              .++.+++++|++.|++    ++.++..|.||||.+    ...+..+++++|++.+.....       .....
T Consensus       368 ~ld~~~~~~~~~eVVklLL~~GAD----In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~  443 (764)
T PHA02716        368 ILDPETDNDIRLDVIQCLISLGAD----ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRV  443 (764)
T ss_pred             cccccccccChHHHHHHHHHCCCC----CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhcc
Confidence                    1344555555555532    444555555555521    122345555555544321100       00011


Q ss_pred             CCcH--HHHHHHcCChhHHHHHhcCc---------------cccccccCCCCCCChHHHHHHHhCCCC-----c-eeecC
Q 037701          262 GWNA--RHFAMVSLRGGVLKSLLENP---------------YVISLIHGRDKNGNTPLHVLAAACRDS-----S-YFIVP  318 (358)
Q Consensus       262 g~t~--l~~a~~~~~~~~~~~Ll~~~---------------~~~~~~~~~~~~g~tpL~~a~~~~~~~-----~-~~Ll~  318 (358)
                      +.+|  +|.++..++.+....+.+..               ....+++.+|..|+||||+|+..++..     + ++|++
T Consensus       444 d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~  523 (764)
T PHA02716        444 DDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS  523 (764)
T ss_pred             CcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh
Confidence            1111  23333222222111111100               012456778899999999999887652     2 88999


Q ss_pred             CcchHHHHhhCCCchhhHhhhCCCCc-----ccccceeeee
Q 037701          319 DSDMYEAVNKQNTSVEHIVRYGYPEL-----EVIPSLLIIN  354 (358)
Q Consensus       319 ~g~~~~~~~~~g~t~l~~a~~~~~~~-----~~~~~L~~~~  354 (358)
                      .|+|+|.+|++|+|||++|+.. ++.     ++++.|+...
T Consensus       524 ~GADIN~~d~~G~TPLh~A~~~-g~~~~~~~eIvk~LL~~g  563 (764)
T PHA02716        524 IQYNINIPTKNGVTPLMLTMRN-NRLSGHQWYIVKNILDKR  563 (764)
T ss_pred             CCCCCcccCCCCCCHHHHHHHc-CCccccHHHHHHHHHhcC
Confidence            9999999999999999999874 655     8888887643

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1e-44  Score=318.98  Aligned_cols=310  Identities=15%  Similarity=0.188  Sum_probs=257.0

Q ss_pred             hhhcccccCCchhhhhhhhhhccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhc
Q 037701            4 DLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKC   83 (358)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~   83 (358)
                      +++.++..++.+.++.+++..    ....+.++||.++..+. ...+++++|+.    .+.+++.+|..|.||||+|+..
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~----~~~g~~~~Lh~~~~~~~-~~~~iv~~Ll~----~Gadvn~~d~~G~TpLh~Aa~~   82 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAI----EPSGNYHILHAYCGIKG-LDERFVEELLH----RGYSPNETDDDGNYPLHIASKI   82 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhcc----CCCCCChHHHHHHHhcC-CCHHHHHHHHH----CcCCCCccCCCCCCHHHHHHHc
Confidence            467788899999999998764    22335789998775432 01567777776    5788999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC-CCCCCccHHH
Q 037701           84 RHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH-RGPDGLTTLH  162 (358)
Q Consensus        84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~  162 (358)
                      |+.++|++|+++|++               ++.+|..|.||||+|+.. .....++++.|++.|++++. .+..|.||||
T Consensus        83 g~~eiv~lLL~~GAd---------------in~~d~~g~TpLh~A~~~-~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~  146 (446)
T PHA02946         83 NNNRIVAMLLTHGAD---------------PNACDKQHKTPLYYLSGT-DDEVIERINLLVQYGAKINNSVDEEGCGPLL  146 (446)
T ss_pred             CCHHHHHHHHHCcCC---------------CCCCCCCCCCHHHHHHHc-CCchHHHHHHHHHcCCCcccccCCCCCcHHH
Confidence            999999999999998               557899999999999753 22358999999999999995 6889999997


Q ss_pred             HHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC--HHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcC-
Q 037701          163 AAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGH--SNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG-  239 (358)
Q Consensus       163 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~-  239 (358)
                       |+..++.+++++|++.|++ .+.++..|.||||+|+..++  .+++++|++.|++    ++.+|..|.||||+|+..+ 
T Consensus       147 -aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad----in~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        147 -ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS----PSKPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             -HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHcCC
Confidence             6667899999999999887 67889999999999887654  6899999999954    7888999999999999886 


Q ss_pred             -cHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCCh-hHHHHHhcCccccc-----------------cccCCC-CCCC
Q 037701          240 -YERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG-GVLKSLLENPYVIS-----------------LIHGRD-KNGN  299 (358)
Q Consensus       240 -~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~~~~~~~-----------------~~~~~~-~~g~  299 (358)
                       +.+++++|++ ++ +++.+|..|.||||+|+..++. ++++.|++++....                 .++.++ ..|.
T Consensus       221 ~~~~iv~lLl~-ga-din~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~  298 (446)
T PHA02946        221 KNVDIINLLLP-ST-DVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDS  298 (446)
T ss_pred             CcHHHHHHHHc-CC-CCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCC
Confidence             7899999985 44 4689999999999999999884 89999999873100                 022222 3578


Q ss_pred             hHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeeee
Q 037701          300 TPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIIN  354 (358)
Q Consensus       300 tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  354 (358)
                      ||||+|++.|+.++ ++|+++|+       .|+|||++|+.. +..+++++|+...
T Consensus       299 TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~-~~~~~v~~Ll~~g  346 (446)
T PHA02946        299 TDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLS-EYETMVDYLLFNH  346 (446)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHh-CHHHHHHHHHHCC
Confidence            99999999999999 99999886       689999999985 8999999998754

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=325.74  Aligned_cols=298  Identities=17%  Similarity=0.164  Sum_probs=262.5

Q ss_pred             hcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcC
Q 037701            6 YRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCR   84 (358)
Q Consensus         6 ~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~   84 (358)
                      ..|+..++.++++.|++.+ +++..+..|.||||+|+..+.....+++++|++    .+++++.++..|.||||+|+..+
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~----~Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLE----AGADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcC
Confidence            4678899999999999998 677789999999999999992111778888877    68899999999999999999999


Q ss_pred             -CcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHH
Q 037701           85 -HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHA  163 (358)
Q Consensus        85 -~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  163 (358)
                       ..+++++|+++|++               ++..+..|.||||+|+. ...++.++++.|++.|++++..+..|.||||+
T Consensus        95 ~~~~iv~lLl~~ga~---------------in~~~~~g~tpLh~a~~-~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~  158 (471)
T PHA03095         95 TTLDVIKLLIKAGAD---------------VNAKDKVGRTPLHVYLS-GFNINPKVIRLLLRKGADVNALDLYGMTPLAV  158 (471)
T ss_pred             CcHHHHHHHHHcCCC---------------CCCCCCCCCCHHHHHhh-CCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence             59999999999998               55788999999999973 23468899999999999999999999999999


Q ss_pred             HHhcC--cHHHHHHHHHhCCcccccccCCCCCHHHHHHHc--CCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcC
Q 037701          164 AVICN--AEDVIKLLLEKKKILTRERDRHGWTSLHHAAYL--GHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG  239 (358)
Q Consensus       164 a~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~  239 (358)
                      |+..+  ..+++++|++.|++... .+..|.||||+++..  +..++++.|++.|.+    ++.++..|.||||+|+..+
T Consensus       159 a~~~~~~~~~iv~~Ll~~g~~~~~-~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~----~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        159 LLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAGCD----PAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             HHHcCCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC----CcccCCCCCCHHHHHHhcC
Confidence            98876  68999999999998544 499999999999875  678999999999954    7788999999999999998


Q ss_pred             cH--HHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eee
Q 037701          240 YE--RVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFI  316 (358)
Q Consensus       240 ~~--~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~L  316 (358)
                      +.  .+++.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|   ++++.+|..|.||||+|+..++..+ +.|
T Consensus       234 ~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~g---ad~n~~~~~g~tpl~~A~~~~~~~~v~~L  309 (471)
T PHA03095        234 SCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALG---ADINAVSSDGNTPLSLMVRNNNGRAVRAA  309 (471)
T ss_pred             CchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            64  678888988766 5889999999999999999999999999999   9999999999999999999999998 999


Q ss_pred             cCCcchHHHHhhCCCc
Q 037701          317 VPDSDMYEAVNKQNTS  332 (358)
Q Consensus       317 l~~g~~~~~~~~~g~t  332 (358)
                      ++.+++++.......+
T Consensus       310 L~~~~~~~~~~~~~~~  325 (471)
T PHA03095        310 LAKNPSAETVAATLNT  325 (471)
T ss_pred             HHhCCCHHHHHHHHHH
Confidence            9999998766554333

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-44  Score=317.81  Aligned_cols=340  Identities=15%  Similarity=0.084  Sum_probs=257.2

Q ss_pred             ChhhhcccccC---Cchhhhhhhhhh-ccceeccCCCceehhhhccc--cccccchHHHHHHHHhhCccchhcccCCCCc
Q 037701            2 NPDLYRDAAKG---EIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQ--QEGERVSTEFVEGILEMCPSLLLQVNDKGDT   75 (358)
Q Consensus         2 ~~~L~~A~~~g---~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   75 (358)
                      +||||+|+..|   +.++++.||+.| +++.+|..|.||||+|+..+  +   .+++++|++.  ..++.++..+..+.+
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~---~eIv~~Ll~~--~~~~~~~~~~~~~d~  116 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVK---SQIVHLLISS--YSNASNELTSNINDF  116 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCc---HHHHHHHHhc--CCCCCcccccccCCc
Confidence            48999999997   589999999998 67779999999999999976  7   8888888762  113334556666777


Q ss_pred             hhHHHHh--cCCcHHHHHHHH-HHHhhhHhhh-----cc------------hhHHHHHHH--------------hhcccC
Q 037701           76 PLHVAAK--CRHPAVVEVLIK-FAKKQSRELE-----SG------------VDWIRWMLL--------------VENEEK  121 (358)
Q Consensus        76 ~Lh~A~~--~~~~~~v~~Ll~-~~~~~~~~~~-----~~------------~~~~~~~~~--------------~~~~~~  121 (358)
                      |||.++.  .++.++|++|+. .+.+++...+     .+            .+.++.++.              ..++-+
T Consensus       117 ~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c  196 (672)
T PHA02730        117 DLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRC  196 (672)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCcc
Confidence            7777776  667777777775 3333332211     11            112222221              122233


Q ss_pred             CcHHHHHHHH---HhCCcHHHHHHHHhcCCCCCCCCCCCccHHHH--HHhcCcHHHHHHHHH------------------
Q 037701          122 NTALHEAVQS---AAKGSVEMVAEILENCPSADHRGPDGLTTLHA--AVICNAEDVIKLLLE------------------  178 (358)
Q Consensus       122 ~t~l~~a~~~---~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~--a~~~~~~~~v~~Ll~------------------  178 (358)
                      .|.||+++.+   ......++++.|+++|+++|.++..|.||||+  +...++.|++++|++                  
T Consensus       197 ~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~  276 (672)
T PHA02730        197 KNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRG  276 (672)
T ss_pred             chhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhh
Confidence            4567766654   56789999999999999999999999999995  555567999999998                  


Q ss_pred             --------------hCCccccc--------------------ccCCCCC---------------------HHHHHHHcC-
Q 037701          179 --------------KKKILTRE--------------------RDRHGWT---------------------SLHHAAYLG-  202 (358)
Q Consensus       179 --------------~~~~~~~~--------------------~~~~~~t---------------------~l~~a~~~~-  202 (358)
                                    +|.+. ..                    .+..|.+                     .|+.-...+ 
T Consensus       277 ~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~  355 (672)
T PHA02730        277 VLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGD  355 (672)
T ss_pred             hHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCC
Confidence                          34442 11                    3444443                     566555545 


Q ss_pred             --CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCc----HHHHHHHHhhCCC-CcccccCCCCcHHHH---HHHc
Q 037701          203 --HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY----ERVVRRIIRHCPE-SYSIVDNRGWNARHF---AMVS  272 (358)
Q Consensus       203 --~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~v~~Ll~~~~~-~~~~~~~~g~t~l~~---a~~~  272 (358)
                        +.+++++|+++|++    ++.. ..|.||||+|+..++    .+++++|+++|++ +++.+|..|.||||.   |...
T Consensus       356 ~v~ieIvelLIs~GAd----IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~  430 (672)
T PHA02730        356 MVSIPILRCMLDNGAT----MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFN  430 (672)
T ss_pred             cCcHHHHHHHHHCCCC----CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhc
Confidence              57999999999976    5554 689999999998875    8999999999874 578899999999994   3322


Q ss_pred             C---------ChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhh-CCCchhhHhhhC-
Q 037701          273 L---------RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNK-QNTSVEHIVRYG-  340 (358)
Q Consensus       273 ~---------~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~-~g~t~l~~a~~~-  340 (358)
                      +         ..+++++|+++|   +++|.+|..|+||||+|+..++..+ ++|++.||+++.++. .|.||+++|+.. 
T Consensus       431 n~~~~~~e~~~~~ivk~LIs~G---ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~  507 (672)
T PHA02730        431 NCGYHCYETILIDVFDILSKYM---DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRR  507 (672)
T ss_pred             cccccccchhHHHHHHHHHhcc---cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhh
Confidence            2         124699999999   9999999999999999999998888 999999999999997 599999999763 


Q ss_pred             CCCcccccceeeeee
Q 037701          341 YPELEVIPSLLIINV  355 (358)
Q Consensus       341 ~~~~~~~~~L~~~~~  355 (358)
                      .++.++++.|+....
T Consensus       508 ~~~~eIv~~LLs~ga  522 (672)
T PHA02730        508 ENKTKLVDLLLSYHP  522 (672)
T ss_pred             cCcHHHHHHHHHcCC
Confidence            367899999987653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-44  Score=315.03  Aligned_cols=320  Identities=21%  Similarity=0.282  Sum_probs=281.2

Q ss_pred             ChhhhcccccCCchhhhhhhhhhccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAA   81 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~   81 (358)
                      ++++|.|+.+|..     +.+.......|..+++|||+|+..+.   .+.++++++    .|++..-.+..+.+|+|+|+
T Consensus        62 d~~~~~~~~~~y~-----~~~~~~~~a~D~~~n~~l~~a~~~~~---~~~i~~Lls----~gad~~~~n~~~~aplh~A~  129 (929)
T KOG0510|consen   62 DTELHHASARNYI-----LSKLAISYAKDSADNTPLHAAVEYNQ---GDKIQVLLS----YGADTPLRNLNKNAPLHLAA  129 (929)
T ss_pred             hhHHHHHHhhcch-----hhhhhhhhhhhcccCchhHHHhhcch---HHHHHHHHh----cCCCCChhhhhccCchhhcc
Confidence            4567777776655     22223345589999999999999999   999999988    68889999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHH
Q 037701           82 KCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTL  161 (358)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  161 (358)
                      ..++.++++.|+++|++               ++..+..|.||||.|+..   ++.|..+.|++.|+++-..+.+|.+|+
T Consensus       130 ~~~~~s~L~~Ll~~~~d---------------vnl~de~~~TpLh~A~~~---~~~E~~k~Li~~~a~~~K~~~~~~~~i  191 (929)
T KOG0510|consen  130 DSGNYSCLKLLLDYGAD---------------VNLEDENGFTPLHLAARK---NKVEAKKELINKGADPCKSDIDGNFPI  191 (929)
T ss_pred             ccchHHHHHHHHHhcCC---------------ccccccCCCchhhHHHhc---ChHHHHHHHHhcCCCCCcccCcCCchH
Confidence            99999999999999988               668999999999999765   899988999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHH-----hCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccc-----------ccccccC
Q 037701          162 HAAVICNAEDVIKLLLE-----KKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKI-----------VALYKED  225 (358)
Q Consensus       162 ~~a~~~~~~~~v~~Ll~-----~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~-----------~~~~~~~  225 (358)
                      |.|++++..++.+.++.     .+.. ++..+..+.||||.|+..|+.++++..++.+....           ..++..|
T Consensus       192 H~aa~s~s~e~mEi~l~~~g~~r~~~-in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d  270 (929)
T KOG0510|consen  192 HEAARSGSKECMEIFLPEHGYERQTH-INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDED  270 (929)
T ss_pred             HHHHHhcchhhhhhhhccccchhhcc-cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccc
Confidence            99999999999999988     3333 56778999999999999999999999999876411           1245678


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHH
Q 037701          226 DRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL  305 (358)
Q Consensus       226 ~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a  305 (358)
                      ..|.||||+|++.|..+.+..|+..|++ ++.++.++.||||.|+..|+...++.|++ -.....+|..|..|.||||+|
T Consensus       271 ~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  271 NDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             ccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhh
Confidence            8999999999999999999999999887 58899999999999999999999999999 222367888999999999999


Q ss_pred             HHhCCCCc-eeecCCcchHH---HHhhCCCchhhHhhhCCCCcccccceeeeee
Q 037701          306 AAACRDSS-YFIVPDSDMYE---AVNKQNTSVEHIVRYGYPELEVIPSLLIINV  355 (358)
Q Consensus       306 ~~~~~~~~-~~Ll~~g~~~~---~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~  355 (358)
                      ++.|+..+ ++|++.||+..   -.|.+|.||||+|+. +|+..+|+.|+.++-
T Consensus       349 a~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~-~g~~~av~~Li~~Ga  401 (929)
T KOG0510|consen  349 AKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAK-YGNTSAVQKLISHGA  401 (929)
T ss_pred             hhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHH-hccHHHHHHHHHcCC
Confidence            99999999 99999999888   459999999999999 599999999988764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.9e-44  Score=320.73  Aligned_cols=281  Identities=19%  Similarity=0.207  Sum_probs=250.8

Q ss_pred             hhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcC---CcHHHHHHHHHHHhhhHhhhcchhHHHHHH
Q 037701           38 HVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCR---HPAVVEVLIKFAKKQSRELESGVDWIRWML  114 (358)
Q Consensus        38 ~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  114 (358)
                      ..+...++   .+++++|++    .+++++..+..|.||||+|+..+   +.+++++|++.|++               +
T Consensus        19 ~~~~~~~~---~~~v~~Ll~----~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad---------------i   76 (471)
T PHA03095         19 LLNASNVT---VEEVRRLLA----AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD---------------V   76 (471)
T ss_pred             HHcCCCCC---HHHHHHHHH----cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC---------------C
Confidence            34555555   777777766    57889999999999999999998   99999999999998               5


Q ss_pred             HhhcccCCcHHHHHHHHHhCC-cHHHHHHHHhcCCCCCCCCCCCccHHHHHH--hcCcHHHHHHHHHhCCcccccccCCC
Q 037701          115 LVENEEKNTALHEAVQSAAKG-SVEMVAEILENCPSADHRGPDGLTTLHAAV--ICNAEDVIKLLLEKKKILTRERDRHG  191 (358)
Q Consensus       115 ~~~~~~~~t~l~~a~~~~~~~-~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~--~~~~~~~v~~Ll~~~~~~~~~~~~~~  191 (358)
                      +..+..|.||||+|+..   + ..+++++|++.|++++..+..|.||||+|+  ..++.+++++|++.|++ .+..+..|
T Consensus        77 n~~~~~g~TpLh~A~~~---~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g  152 (471)
T PHA03095         77 NAPERCGFTPLHLYLYN---ATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYG  152 (471)
T ss_pred             CCCCCCCCCHHHHHHHc---CCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCC
Confidence            57888999999999876   7 699999999999999999999999999999  55688999999999988 57789999


Q ss_pred             CCHHHHHHHcC--CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc--CcHHHHHHHHhhCCCCcccccCCCCcHHH
Q 037701          192 WTSLHHAAYLG--HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ--GYERVVRRIIRHCPESYSIVDNRGWNARH  267 (358)
Q Consensus       192 ~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  267 (358)
                      .||||+|+..+  +.+++++|++.|++    ++..+..|.||||.++..  +..++++.|++.+.+. +.+|..|.||||
T Consensus       153 ~tpL~~a~~~~~~~~~iv~~Ll~~g~~----~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh  227 (471)
T PHA03095        153 MTPLAVLLKSRNANVELLRLLIDAGAD----VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLH  227 (471)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence            99999998876  57999999999965    555688999999999875  7889999999998774 889999999999


Q ss_pred             HHHHcCCh--hHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCc
Q 037701          268 FAMVSLRG--GVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPEL  344 (358)
Q Consensus       268 ~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  344 (358)
                      +|+..++.  .++..+++.|   +++|.+|..|+||||+|+..++..+ ++|++.|+|++.+|..|+||+++|+.. ++.
T Consensus       228 ~Aa~~~~~~~~~v~~ll~~g---~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~-~~~  303 (471)
T PHA03095        228 SMATGSSCKRSLVLPLLIAG---ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRN-NNG  303 (471)
T ss_pred             HHHhcCCchHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh-CCH
Confidence            99999875  5788899988   8999999999999999999999988 999999999999999999999999985 999


Q ss_pred             ccccceeee
Q 037701          345 EVIPSLLII  353 (358)
Q Consensus       345 ~~~~~L~~~  353 (358)
                      ++++.|+..
T Consensus       304 ~~v~~LL~~  312 (471)
T PHA03095        304 RAVRAALAK  312 (471)
T ss_pred             HHHHHHHHh
Confidence            999988764

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-43  Score=319.09  Aligned_cols=286  Identities=20%  Similarity=0.254  Sum_probs=258.3

Q ss_pred             cCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHH-----HHhcC
Q 037701           11 KGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHV-----AAKCR   84 (358)
Q Consensus        11 ~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~-----A~~~~   84 (358)
                      ....+.++++++.+ ..+..+..+.||||.|+..|+   .+++++|++    .+.+++..+..|.||||+     |+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~---~~ivk~Ll~----~g~~~~~~~~~~~t~L~~~~~~~a~~~~   84 (480)
T PHA03100         12 IIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARN---IDVVKILLD----NGADINSSTKNNSTPLHYLSNIKYNLTD   84 (480)
T ss_pred             HHHHHHHHHHHhcCccchhhhcccchhhhhhhccCC---HHHHHHHHH----cCCCCCCccccCcCHHHHHHHHHHHhhc
Confidence            34456788888775 344578899999999999999   899999887    478888999999999999     99999


Q ss_pred             CcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHH
Q 037701           85 HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAA  164 (358)
Q Consensus        85 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  164 (358)
                      +.+++++|+++|++               ++..+..|.||||+|+. ...++.+++++|++.|++++..+..|.||||+|
T Consensus        85 ~~~iv~~Ll~~ga~---------------i~~~d~~g~tpL~~A~~-~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A  148 (480)
T PHA03100         85 VKEIVKLLLEYGAN---------------VNAPDNNGITPLLYAIS-KKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY  148 (480)
T ss_pred             hHHHHHHHHHCCCC---------------CCCCCCCCCchhhHHHh-cccChHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            99999999999998               44688899999999971 135999999999999999999999999999999


Q ss_pred             HhcC--cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCC------CCHHHHHH
Q 037701          165 VICN--AEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRG------MTALHLAA  236 (358)
Q Consensus       165 ~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g------~t~l~~a~  236 (358)
                      +..+  +.+++++|+++|++ .+.++..|.||||+|+..|+.+++++|++.|++    ++..+..|      .||+|.|+
T Consensus       149 ~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~----~~~~~~~~~~~~~~~t~l~~a~  223 (480)
T PHA03100        149 LESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD----INAGDIETLLFTIFETPLHIAA  223 (480)
T ss_pred             HHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC----ccCCCCCCCcHHHHHhHHHHHH
Confidence            9999  99999999999988 567788999999999999999999999999965    66667777      89999999


Q ss_pred             HcCc--HHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-
Q 037701          237 SQGY--ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-  313 (358)
Q Consensus       237 ~~~~--~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-  313 (358)
                      ..++  .+++++|++.|.+ ++.+|..|.||||+|+..++.+++++|+++|   ++++.+|..|.|||++|++.++..+ 
T Consensus       224 ~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g---ad~n~~d~~g~tpl~~A~~~~~~~iv  299 (480)
T PHA03100        224 CYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLG---ANPNLVNKYGDTPLHIAILNNNKEIF  299 (480)
T ss_pred             HhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCcHHHHHHHhCCHHHH
Confidence            9999  9999999999876 5889999999999999999999999999999   8999999999999999999999988 


Q ss_pred             eeecCCcchHHHHhh
Q 037701          314 YFIVPDSDMYEAVNK  328 (358)
Q Consensus       314 ~~Ll~~g~~~~~~~~  328 (358)
                      ++|++.|++++..+.
T Consensus       300 ~~Ll~~g~~i~~i~~  314 (480)
T PHA03100        300 KLLLNNGPSIKTIIE  314 (480)
T ss_pred             HHHHhcCCCHHHHHH
Confidence            999999999988654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.6e-43  Score=318.24  Aligned_cols=222  Identities=18%  Similarity=0.151  Sum_probs=151.4

Q ss_pred             cchHHHHHHHHhhCc-cchhcc-cCCCCchhHHHHh--cCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcH
Q 037701           49 RVSTEFVEGILEMCP-SLLLQV-NDKGDTPLHVAAK--CRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTA  124 (358)
Q Consensus        49 ~~~~~~l~~~~~~~~-~~~~~~-~~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  124 (358)
                      .+++++|++    .+ ++++.. +..|.||||+|+.  .++.+++++|+++|++               ++.++..|.||
T Consensus       155 leiVk~LLe----~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD---------------VN~kD~~G~TP  215 (764)
T PHA02716        155 LDLIKYMVD----VGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN---------------VNLQNNHLITP  215 (764)
T ss_pred             HHHHHHHHH----CCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC---------------CCCCCCCCCCH
Confidence            677888776    35 788888 8999999999875  4578999999999998               55789999999


Q ss_pred             HHHHHHHHhCC--cHHHHHHHHhcCCCCCCCCCCCccHHHHHH---hcCcHHHHHHHHHhCCcccccccCCCCCHHH---
Q 037701          125 LHEAVQSAAKG--SVEMVAEILENCPSADHRGPDGLTTLHAAV---ICNAEDVIKLLLEKKKILTRERDRHGWTSLH---  196 (358)
Q Consensus       125 l~~a~~~~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~---~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~---  196 (358)
                      ||+|+..   +  ..++++.|+++|++++.++..|.||||.|+   ..++.++++.+++.+... ..  ....++++   
T Consensus       216 LH~Aa~~---g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n-~~--~~~~~~L~~~i  289 (764)
T PHA02716        216 LHTYLIT---GNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGN-KV--KNIPMILHSYI  289 (764)
T ss_pred             HHHHHHc---CCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccc-cc--ccchhhhHHHH
Confidence            9999865   5  458999999999999999999999999875   345566666665543221 00  01111222   


Q ss_pred             HHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHH--cCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHH---
Q 037701          197 HAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS--QGYERVVRRIIRHCPESYSIVDNRGWNARHFAMV---  271 (358)
Q Consensus       197 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~---  271 (358)
                      .|+..|+.+++++|++.|++    ++.++..|+||||+|+.  .++.+++++|++.|++ ++.+|..|+||||+|+.   
T Consensus       290 ~AA~~g~leiVklLLe~GAd----IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~la  364 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVK----LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLS  364 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCc----eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhh
Confidence            24556666666666666533    55556666666665543  3455666666666554 35566666666666543   


Q ss_pred             -----------cCChhHHHHHhcCccccccccCCCCCCChHHH
Q 037701          272 -----------SLRGGVLKSLLENPYVISLIHGRDKNGNTPLH  303 (358)
Q Consensus       272 -----------~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~  303 (358)
                                 .++.+++++|+++|   ++++.+|..|.||||
T Consensus       365 v~~~ld~~~~~~~~~eVVklLL~~G---ADIn~kn~~G~TPLh  404 (764)
T PHA02716        365 VVNILDPETDNDIRLDVIQCLISLG---ADITAVNCLGYTPLT  404 (764)
T ss_pred             hhccccccccccChHHHHHHHHHCC---CCCCCcCCCCCChHH
Confidence                       24556666666666   566666666666666

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.2e-43  Score=319.27  Aligned_cols=334  Identities=15%  Similarity=0.029  Sum_probs=207.7

Q ss_pred             Chhhhcccc---cCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHH-hh---------------
Q 037701            2 NPDLYRDAA---KGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGIL-EM---------------   61 (358)
Q Consensus         2 ~~~L~~A~~---~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~-~~---------------   61 (358)
                      .++||+|+.   .|+.++++.|++.+ +++..+..|.||||+|+..|+   .++++.+.+.+ +.               
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~---~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~  109 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRH---VKVNKDIAMALLEATGYSNINDFNIFSYM  109 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC---hhHHHHHHHHHHhccCCCCCCCcchHHHH
Confidence            479999744   48999999999998 566688899999999999887   55443222221 11               


Q ss_pred             ---------------CccchhcccCCCCchhHHHH--hcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccC---
Q 037701           62 ---------------CPSLLLQVNDKGDTPLHVAA--KCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEK---  121 (358)
Q Consensus        62 ---------------~~~~~~~~~~~g~t~Lh~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  121 (358)
                                     .+++++..|..|.||||.|+  ..|+.+++++|+++|++.+.            -+..+..|   
T Consensus       110 a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~------------~d~~~~~g~~~  177 (661)
T PHA02917        110 KSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY------------EDEDDEYGYAY  177 (661)
T ss_pred             HhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc------------ccccccccccc
Confidence                           24445555555555555332  34455555555555555210            00111222   


Q ss_pred             --------CcHHHHHHHH--------HhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcH--HHHHHHHHhCCcc
Q 037701          122 --------NTALHEAVQS--------AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAE--DVIKLLLEKKKIL  183 (358)
Q Consensus       122 --------~t~l~~a~~~--------~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~~v~~Ll~~~~~~  183 (358)
                              .||||+|+..        +..++.+++++|++.|+++|.++.+|.||||+|+..|+.  ++|++|++ |++.
T Consensus       178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence                    3666666431        012355666666666666666666666666666666553  56666643 4432


Q ss_pred             c---ccccCCCCCHHHHHHHc------C---CHHHHHHHhcCCCccccc---cccc------------CCCCCCHHHHHH
Q 037701          184 T---RERDRHGWTSLHHAAYL------G---HSNITSMMLKSEDDKIVA---LYKE------------DDRGMTALHLAA  236 (358)
Q Consensus       184 ~---~~~~~~~~t~l~~a~~~------~---~~~~~~~Ll~~~~~~~~~---~~~~------------~~~g~t~l~~a~  236 (358)
                      .   ...+..+.+++++|+.-      .   +.++++.|++.|++....   .+..            ...+.+++|.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (661)
T PHA02917        257 TAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILI  336 (661)
T ss_pred             cccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHH
Confidence            2   12344455555655521      1   445666666666431100   0001            111223333322


Q ss_pred             ---HcCc--HHHHHHHHhhCCCC-----------------------------cccccCCCCcHHHHHHHcC---------
Q 037701          237 ---SQGY--ERVVRRIIRHCPES-----------------------------YSIVDNRGWNARHFAMVSL---------  273 (358)
Q Consensus       237 ---~~~~--~~~v~~Ll~~~~~~-----------------------------~~~~~~~g~t~l~~a~~~~---------  273 (358)
                         ..|.  .+++++|++.|++.                             +...+..|.||||.|++.+         
T Consensus       337 ~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~  416 (661)
T PHA02917        337 EYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTY  416 (661)
T ss_pred             HHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhh
Confidence               2443  44777777766531                             1223456999999987533         


Q ss_pred             --------------ChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhh
Q 037701          274 --------------RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVR  338 (358)
Q Consensus       274 --------------~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~  338 (358)
                                    ..++++.|+++|   +++|.+|..|+||||+|+..++..+ ++|++.|+|++.++..|.||+++|.
T Consensus       417 ~~~~~~~~~~~~~~~~~~v~~Ll~~G---AdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~  493 (661)
T PHA02917        417 TYKKGLCDMSYACPILSTINICLPYL---KDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAI  493 (661)
T ss_pred             hhhhccchhhhhhhhHHHHHHHHHCC---CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence                          245779999999   9999999999999999999988877 9999999999999999999999998


Q ss_pred             hCCCCcccccceeeee
Q 037701          339 YGYPELEVIPSLLIIN  354 (358)
Q Consensus       339 ~~~~~~~~~~~L~~~~  354 (358)
                      ...++.+++++|+...
T Consensus       494 ~~~~~~~iv~~LL~~g  509 (661)
T PHA02917        494 NESRNIELLKMLLCHK  509 (661)
T ss_pred             HhCCCHHHHHHHHHcC
Confidence            5347789999888654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5e-43  Score=316.42  Aligned_cols=265  Identities=21%  Similarity=0.208  Sum_probs=244.5

Q ss_pred             CccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHH-----HHHHHhCCc
Q 037701           62 CPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE-----AVQSAAKGS  136 (358)
Q Consensus        62 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~-----a~~~~~~~~  136 (358)
                      .+...+..+..+.||||.|+..++.++|++|+++|+++               +..+..+.||||+     |+..   ++
T Consensus        24 ~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~---------------~~~~~~~~t~L~~~~~~~a~~~---~~   85 (480)
T PHA03100         24 EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADI---------------NSSTKNNSTPLHYLSNIKYNLT---DV   85 (480)
T ss_pred             cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCC---------------CCccccCcCHHHHHHHHHHHhh---ch
Confidence            35667778889999999999999999999999999884               3577889999999     9776   99


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCccHHHHHH--hcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC--CHHHHHHHhc
Q 037701          137 VEMVAEILENCPSADHRGPDGLTTLHAAV--ICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG--HSNITSMMLK  212 (358)
Q Consensus       137 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~  212 (358)
                      .++++.|++.|++++..+..|.||||+|+  ..++.+++++|++.|++ .+..+..|.||||+|+..+  +.+++++|++
T Consensus        86 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~  164 (480)
T PHA03100         86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLID  164 (480)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHH
Confidence            99999999999999999999999999999  99999999999999988 5678999999999999999  9999999999


Q ss_pred             CCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCC------CcHHHHHHHcCC--hhHHHHHhcC
Q 037701          213 SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRG------WNARHFAMVSLR--GGVLKSLLEN  284 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~  284 (358)
                      .|++    ++..+..|.||||+|+..|+.+++++|++.|++. +..+..|      .||+|+|+..++  .+++++|+++
T Consensus       165 ~g~d----in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~  239 (480)
T PHA03100        165 KGVD----INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY  239 (480)
T ss_pred             CCCC----cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence            9965    7778889999999999999999999999998774 6777778      899999999999  9999999999


Q ss_pred             ccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeeee
Q 037701          285 PYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIIN  354 (358)
Q Consensus       285 ~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  354 (358)
                      |   ++++.+|..|.||||+|+..++.++ ++|++.|+|++.+|..|.||+++|+.. ++.+++++|+...
T Consensus       240 g---~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~-~~~~iv~~Ll~~g  306 (480)
T PHA03100        240 G---VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN-NNKEIFKLLLNNG  306 (480)
T ss_pred             C---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh-CCHHHHHHHHhcC
Confidence            9   8999999999999999999999888 999999999999999999999999985 8999999998643

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.6e-42  Score=304.96  Aligned_cols=290  Identities=18%  Similarity=0.240  Sum_probs=246.1

Q ss_pred             ChhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      .||||.|+..|+.+++++|++.| .++..+..|.||||.|+..|+   .+++++|++    .+.+.        +  ..+
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~---~~iv~~Ll~----~g~~~--------~--~~~   98 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGA---HDIIKLLID----NGVDT--------S--ILP   98 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHH----CCCCC--------C--cch
Confidence            48999999999999999999998 566688899999999999999   999999877    23322        1  123


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccH
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTT  160 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  160 (358)
                      ....+.+++++|++.|++               ++..+..|.||||+|+..   ++.+++++|++.|++++.++..|.||
T Consensus        99 ~~~~~~~~i~~ll~~g~d---------------~n~~~~~g~T~Lh~A~~~---~~~~~v~~Ll~~gad~n~~d~~g~tp  160 (434)
T PHA02874         99 IPCIEKDMIKTILDCGID---------------VNIKDAELKTFLHYAIKK---GDLESIKMLFEYGADVNIEDDNGCYP  160 (434)
T ss_pred             hccCCHHHHHHHHHCcCC---------------CCCCCCCCccHHHHHHHC---CCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            344678999999999988               446888999999999765   99999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCc
Q 037701          161 LHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY  240 (358)
Q Consensus       161 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  240 (358)
                      ||+|+..++.+++++|++.|+. .+..+..|.||||+|+..|+.+++++|++.|++    ++..+..|.||||.|+..+.
T Consensus       161 Lh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~----i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        161 IHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH----IMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             HHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CcCCCCCCCCHHHHHHHCCh
Confidence            9999999999999999999987 567889999999999999999999999999965    66778899999999998865


Q ss_pred             HHHHHHHHhhCCCCcccccCCCCcHHHHHHHcC-ChhHHHHHhcCccccccccCCCCCCChHHHHHHHhC-CCCc-eeec
Q 037701          241 ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL-RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC-RDSS-YFIV  317 (358)
Q Consensus       241 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~-~~~~-~~Ll  317 (358)
                       +.+++|+. +++ ++.+|..|+||||+|+..+ +.+++++|+++|   ++++.+|..|.||||+|++++ ...+ +.|+
T Consensus       236 -~~i~~Ll~-~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g---ad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll  309 (434)
T PHA02874        236 -SAIELLIN-NAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYHK---ADISIKDNKGENPIDTAFKYINKDPVIKDII  309 (434)
T ss_pred             -HHHHHHHc-CCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCc---CCCCCCCCCCCCHHHHHHHhCCccHHHHHHH
Confidence             56666664 343 5889999999999999875 789999999999   899999999999999999987 3444 8888


Q ss_pred             CCcchHHHHhhCC-CchhhHh
Q 037701          318 PDSDMYEAVNKQN-TSVEHIV  337 (358)
Q Consensus       318 ~~g~~~~~~~~~g-~t~l~~a  337 (358)
                      ..++.++..+..+ .+++..+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PHA02874        310 ANAVLIKEADKLKDSDFLEHI  330 (434)
T ss_pred             HhcCchhhccccchhHHHHHH
Confidence            8888776665555 3334443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-42  Score=310.09  Aligned_cols=307  Identities=19%  Similarity=0.154  Sum_probs=210.7

Q ss_pred             hhcccccCCchhhhhhhhhh----c-cceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHH
Q 037701            5 LYRDAAKGEIEPFNEIAKDE----L-VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHV   79 (358)
Q Consensus         5 L~~A~~~g~~~~~~~ll~~~----~-~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~   79 (358)
                      |+.++...+.+-+...++.-    . .+..+..+.||||+|+..|+   .+++++|++    .+++++.+|..|.||||+
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~---~e~vk~Ll~----~gadvn~~d~~g~TpLh~   76 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARN---LDVVKSLLT----RGHNVNQPDHRDLTPLHI   76 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCC---HHHHHHHHH----CCCCCCCCCCCCCCHHHH
Confidence            45556666654444444431    1 12245567788888888888   777777766    467788888888888888


Q ss_pred             HHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCcc
Q 037701           80 AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLT  159 (358)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  159 (358)
                      ||..|+.++++.|++.+....                 ...+.++++.|+..   ++.++++.|+..+.+.... . ...
T Consensus        77 A~~~g~~~~v~~Ll~~~~~~~-----------------~~~~~~~l~~a~~~---~~~ei~~~Ll~~~~~~~~~-~-~~~  134 (477)
T PHA02878         77 ICKEPNKLGMKEMIRSINKCS-----------------VFYTLVAIKDAFNN---RNVEIFKIILTNRYKNIQT-I-DLV  134 (477)
T ss_pred             HHHCccHhHHHHHHHHHhccc-----------------cccchhhHHHHHHc---CCHHHHHHHHhCcccCccc-C-cHH
Confidence            888888888888887765421                 13456788888654   7888888887765432210 0 001


Q ss_pred             HHHHHHhcC--cHHHHHHHHHhCCcccccccCC-CCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHH
Q 037701          160 TLHAAVICN--AEDVIKLLLEKKKILTRERDRH-GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA  236 (358)
Q Consensus       160 ~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~  236 (358)
                      .+......+  ..+++++|++.|++ .+..+.. |.||||+|+..|+.+++++|++.|++    ++..+..|.||||.|+
T Consensus       135 ~~~~~~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad----~n~~d~~g~tpLh~A~  209 (477)
T PHA02878        135 YIDKKSKDDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGAN----VNIPDKTNNSPLHHAV  209 (477)
T ss_pred             HHhhccchhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHH
Confidence            111111112  23578888887777 4455555 88888888888888888888887754    6667777888888888


Q ss_pred             HcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHc-CChhHHHHHhcCccccccccCCCC-CCChHHHHHHHhCCCCc-
Q 037701          237 SQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVS-LRGGVLKSLLENPYVISLIHGRDK-NGNTPLHVLAAACRDSS-  313 (358)
Q Consensus       237 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~-~g~tpL~~a~~~~~~~~-  313 (358)
                      ..++.+++++|++.+++ ++.+|..|.||||+|+.. ++.+++++|+++|   ++++.++. .|.||||+|  .++..+ 
T Consensus       210 ~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g---advn~~~~~~g~TpLh~A--~~~~~~v  283 (477)
T PHA02878        210 KHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHG---VDVNAKSYILGLTALHSS--IKSERKL  283 (477)
T ss_pred             HhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC---CCCCccCCCCCCCHHHHH--ccCHHHH
Confidence            88888888888887765 477778888888888865 5778888888887   77777765 688888888  334444 


Q ss_pred             eeecCCcchHHHHhhCCCchhhHhhhCCCCccccccee
Q 037701          314 YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLL  351 (358)
Q Consensus       314 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  351 (358)
                      ++|++.|+|++..|..|.||+++|+..+...++++.|+
T Consensus       284 ~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li  321 (477)
T PHA02878        284 KLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI  321 (477)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHH
Confidence            78888888888888888888888876545566666554

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-41  Score=301.95  Aligned_cols=297  Identities=15%  Similarity=0.118  Sum_probs=240.1

Q ss_pred             hhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAA   81 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~   81 (358)
                      +|||.||..|+.++++.|++.+ +++..+..|.||||+|+..|+   .+.++.++.....    ..  ...+.+|++.|+
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~---~~~v~~Ll~~~~~----~~--~~~~~~~l~~a~  109 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPN---KLGMKEMIRSINK----CS--VFYTLVAIKDAF  109 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCcc---HhHHHHHHHHHhc----cc--cccchhhHHHHH
Confidence            6899999999999999999998 677799999999999999999   8888888774221    11  146789999999


Q ss_pred             hcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCC-CccH
Q 037701           82 KCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPD-GLTT  160 (358)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~  160 (358)
                      ..++.+++++|+..+......                .+ ...+..... ......+++++|++.|++++..+.. |.||
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~----------------~~-~~~~~~~~~-~~~~~~~iv~~Ll~~gadin~~~~~~g~tp  171 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQT----------------ID-LVYIDKKSK-DDIIEAEITKLLLSYGADINMKDRHKGNTA  171 (477)
T ss_pred             HcCCHHHHHHHHhCcccCccc----------------Cc-HHHHhhccc-hhhHHHHHHHHHHHcCCCCCccCCCCCCCH
Confidence            999999999999875432110                00 000111100 0112356999999999999999998 9999


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc-C
Q 037701          161 LHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ-G  239 (358)
Q Consensus       161 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~-~  239 (358)
                      ||+|+..|+.+++++|++.|++ .+..+..|.||||.|+..++.+++++|++.|++    ++.++..|.||||+|+.. +
T Consensus       172 Lh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~----in~~d~~g~TpLh~A~~~~~  246 (477)
T PHA02878        172 LHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS----TDARDKCGNTPLHISVGYCK  246 (477)
T ss_pred             HHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHhcC
Confidence            9999999999999999999988 577899999999999999999999999999955    778899999999999976 7


Q ss_pred             cHHHHHHHHhhCCCCcccccC-CCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCC-CCc-eee
Q 037701          240 YERVVRRIIRHCPESYSIVDN-RGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACR-DSS-YFI  316 (358)
Q Consensus       240 ~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~-~~~-~~L  316 (358)
                      +.+++++|+++|++. +..+. .|.||||+|  .++.+++++|+++|   ++++.+|..|.||||+|+..+. ..+ ++|
T Consensus       247 ~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g---adin~~d~~g~TpL~~A~~~~~~~~~~~~l  320 (477)
T PHA02878        247 DYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEYG---ADINSLNSYKLTPLSSAVKQYLCINIGRIL  320 (477)
T ss_pred             CHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHHcCccchHHHH
Confidence            899999999998874 66664 799999999  56789999999999   9999999999999999998653 333 555


Q ss_pred             cCC-----cchHHHHhhCCCchhhHh
Q 037701          317 VPD-----SDMYEAVNKQNTSVEHIV  337 (358)
Q Consensus       317 l~~-----g~~~~~~~~~g~t~l~~a  337 (358)
                      +..     +.+++.++..|.++-.-+
T Consensus       321 i~~~~~~~~~~~~~~~~~g~~~n~~~  346 (477)
T PHA02878        321 ISNICLLKRIKPDIKNSEGFIDNMDC  346 (477)
T ss_pred             HHHHHHHHhccCcccCcHHHHHHHHH
Confidence            543     456666676676654433

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=299.66  Aligned_cols=281  Identities=15%  Similarity=0.124  Sum_probs=220.5

Q ss_pred             cccCCchhhhhhhhhh-ccceeccCCCceehhhhccc--cccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcC-
Q 037701            9 AAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQ--QEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCR-   84 (358)
Q Consensus         9 ~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~-   84 (358)
                      ....+.++++.|++.| +++.. ..|.||||.++..+  +   .+++++|++    .|++++.++ .+.||||.|+..+ 
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~---~~iv~~Ll~----~GAdvn~~~-~~~tpL~~a~~~~~   81 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVK---IKIVKLLID----NGADVNYKG-YIETPLCAVLRNRE   81 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCC---hHHHHHHHH----cCCCccCCC-CCCCcHHHHHhccC
Confidence            3367888899999888 45545 77888887655443  5   678888877    577787765 5689999887654 


Q ss_pred             -----CcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC-CCCCCCCc
Q 037701           85 -----HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA-DHRGPDGL  158 (358)
Q Consensus        85 -----~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~-~~~~~~~~  158 (358)
                           +.+++++|+++|++               ++.++..|.||||.|+..+..++.+++++|+++|+++ +.++..|.
T Consensus        82 ~~~~~~~~iv~~Ll~~Gad---------------in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~  146 (494)
T PHA02989         82 ITSNKIKKIVKLLLKFGAD---------------INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGY  146 (494)
T ss_pred             cchhhHHHHHHHHHHCCCC---------------CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCC
Confidence                 46789999999888               6688888999998887654556788999999999998 78888899


Q ss_pred             cHHHHHHhc--CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC----CHHHHHHHhcCCCcccccccccCCCCCCHH
Q 037701          159 TTLHAAVIC--NAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG----HSNITSMMLKSEDDKIVALYKEDDRGMTAL  232 (358)
Q Consensus       159 t~l~~a~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l  232 (358)
                      ||||+|+..  ++.+++++|+++|+++....+..|.||||.|++.+    +.+++++|++.|++    ++..+..+.+|+
T Consensus       147 tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~----vn~~~~~~~t~l  222 (494)
T PHA02989        147 NLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN----IETNNNGSESVL  222 (494)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC----ccccCCccccHH
Confidence            999988754  57889999998888854446778889998887654    78889999988854    666777788888


Q ss_pred             HHHHHc------CcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHH
Q 037701          233 HLAASQ------GYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA  306 (358)
Q Consensus       233 ~~a~~~------~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~  306 (358)
                      |.++..      +..+++++|++ ++ +++.+|..|+||||+|+..++.+++++|+++|   ++++.+|..|+||||+|+
T Consensus       223 ~~~~~~~~~~~~~~~~il~~l~~-~a-dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G---adin~~d~~G~TpL~~A~  297 (494)
T PHA02989        223 ESFLDNNKILSKKEFKVLNFILK-YI-KINKKDKKGFNPLLISAKVDNYEAFNYLLKLG---DDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             HHHHHhchhhcccchHHHHHHHh-CC-CCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC---CCccccCCCCCCHHHHHH
Confidence            876654      34667777665 34 46888888999999999999999999999888   888888999999999999


Q ss_pred             HhCCCCc-eeecCCcch
Q 037701          307 AACRDSS-YFIVPDSDM  322 (358)
Q Consensus       307 ~~~~~~~-~~Ll~~g~~  322 (358)
                      ..++..+ +.|++.+.+
T Consensus       298 ~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        298 KHGNIDMLNRILQLKPG  314 (494)
T ss_pred             HcCCHHHHHHHHhcCCC
Confidence            8888877 777776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-40  Score=297.01  Aligned_cols=287  Identities=16%  Similarity=0.177  Sum_probs=239.3

Q ss_pred             ehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhc--CCcHHHHHHHHHHHhhhHhhhcchhHHHHHH
Q 037701           37 LHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKC--RHPAVVEVLIKFAKKQSRELESGVDWIRWML  114 (358)
Q Consensus        37 l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  114 (358)
                      ||..+......+.+++++|++    .|++++.. ..|.||||.++..  ++.++|++|+++|++.               
T Consensus         4 l~~y~~~~~~~~~~~v~~LL~----~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv---------------   63 (494)
T PHA02989          4 LYEYILYSDTVDKNALEFLLR----TGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV---------------   63 (494)
T ss_pred             HHHHHHcCCcCcHHHHHHHHH----cCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc---------------
Confidence            444444433333777888876    57888888 6799999876654  3689999999999994               


Q ss_pred             HhhcccCCcHHHHHHHHH---hCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc---CcHHHHHHHHHhCCccccccc
Q 037701          115 LVENEEKNTALHEAVQSA---AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVIC---NAEDVIKLLLEKKKILTRERD  188 (358)
Q Consensus       115 ~~~~~~~~t~l~~a~~~~---~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~  188 (358)
                      +..+ .+.||||.|+...   ..+..++++.|+++|+++|.++..|.||||.|+..   ++.+++++|+++|++..+.++
T Consensus        64 n~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d  142 (494)
T PHA02989         64 NYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN  142 (494)
T ss_pred             cCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccC
Confidence            3444 5689999988642   35778999999999999999999999999988765   679999999999998547889


Q ss_pred             CCCCCHHHHHHHc--CCHHHHHHHhcCCCcccccccc-cCCCCCCHHHHHHHcC----cHHHHHHHHhhCCCCcccccCC
Q 037701          189 RHGWTSLHHAAYL--GHSNITSMMLKSEDDKIVALYK-EDDRGMTALHLAASQG----YERVVRRIIRHCPESYSIVDNR  261 (358)
Q Consensus       189 ~~~~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~-~~~~g~t~l~~a~~~~----~~~~v~~Ll~~~~~~~~~~~~~  261 (358)
                      ..|.||||+|+..  ++.+++++|++.|++    ++. .+..|.||||.|+..+    +.+++++|++.|++ ++..+..
T Consensus       143 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad----i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~  217 (494)
T PHA02989        143 SRGYNLLHMYLESFSVKKDVIKILLSFGVN----LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNG  217 (494)
T ss_pred             CCCCCHHHHHHHhccCCHHHHHHHHHcCCC----ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCc
Confidence            9999999998764  578999999999965    555 5778999999998764    89999999999887 4788888


Q ss_pred             CCcHHHHHHHcC------ChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchh
Q 037701          262 GWNARHFAMVSL------RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVE  334 (358)
Q Consensus       262 g~t~l~~a~~~~------~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l  334 (358)
                      |.|++|.++..+      ..+++++|+. +   +++|.+|..|+||||+|+..++..+ ++|++.|+|++.+|..|.|||
T Consensus       218 ~~t~l~~~~~~~~~~~~~~~~il~~l~~-~---advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL  293 (494)
T PHA02989        218 SESVLESFLDNNKILSKKEFKVLNFILK-Y---IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVL  293 (494)
T ss_pred             cccHHHHHHHhchhhcccchHHHHHHHh-C---CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            999999877643      4567777665 4   7999999999999999999999888 999999999999999999999


Q ss_pred             hHhhhCCCCcccccceeeee
Q 037701          335 HIVRYGYPELEVIPSLLIIN  354 (358)
Q Consensus       335 ~~a~~~~~~~~~~~~L~~~~  354 (358)
                      ++|+.. ++.++++.|+...
T Consensus       294 ~~A~~~-~~~~iv~~LL~~~  312 (494)
T PHA02989        294 TYAIKH-GNIDMLNRILQLK  312 (494)
T ss_pred             HHHHHc-CCHHHHHHHHhcC
Confidence            999985 9999999988754

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.9e-41  Score=274.16  Aligned_cols=230  Identities=15%  Similarity=0.109  Sum_probs=203.5

Q ss_pred             cCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHH
Q 037701           83 CRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH  162 (358)
Q Consensus        83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~  162 (358)
                      .++.+++++|+++|+.                 ..|..|.||||+|+..   ++.++++.|++.|++++..+  +.||||
T Consensus         9 ~~~~~~~~~Lis~~a~-----------------~~D~~G~TpLh~Aa~~---g~~eiv~~Ll~~ga~~n~~d--~~TpLh   66 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF-----------------KADVHGHSALYYAIAD---NNVRLVCTLLNAGALKNLLE--NEFPLH   66 (284)
T ss_pred             cCHHHHHHHHHhCCCC-----------------CCCCCCCcHHHHHHHc---CCHHHHHHHHHCcCCCcCCC--CCCHHH
Confidence            4678999999998875                 4788999999999776   99999999999999888754  689999


Q ss_pred             HHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCC-CHHHHHHHcCcH
Q 037701          163 AAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGM-TALHLAASQGYE  241 (358)
Q Consensus       163 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~l~~a~~~~~~  241 (358)
                      +|+..++.+++++|++.|++ .+.++..|.||||+|+..|+.+++++|++.+++    ++..+..|+ ||||+|+..|+.
T Consensus        67 ~Aa~~g~~eiV~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad----in~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         67 QAATLEDTKIVKILLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR----LMFYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             HHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cCccCCCCCcHHHHHHHHcCCH
Confidence            99999999999999999887 577899999999999999999999999999865    666777774 899999999999


Q ss_pred             HHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChH-HHHHHHhCCCCc-eeecCC
Q 037701          242 RVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTP-LHVLAAACRDSS-YFIVPD  319 (358)
Q Consensus       242 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tp-L~~a~~~~~~~~-~~Ll~~  319 (358)
                      +++++|++.++...+.  ..|.||||+|+..|+.++++.|+++|   ++++.+|..|.|| ||+|+..++..+ ++|+++
T Consensus       142 eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~g---Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~  216 (284)
T PHA02791        142 SIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYM---TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY  216 (284)
T ss_pred             HHHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHHHHHHHCC---CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC
Confidence            9999999987643221  35899999999999999999999999   8999999999987 999999999999 999999


Q ss_pred             cchHHHHhhCCCchhhHhhhCCCCcccccceee
Q 037701          320 SDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLI  352 (358)
Q Consensus       320 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~  352 (358)
                      |+|++.+|..| +++       +..|++++|++
T Consensus       217 Ga~in~~~~~~-~~l-------~~~e~~~~ll~  241 (284)
T PHA02791        217 DINIYSVNLEN-VLL-------DDAEIAKMIIE  241 (284)
T ss_pred             CCCCccCcccC-ccC-------CCHHHHHHHHH
Confidence            99999999955 666       55667777765

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=288.08  Aligned_cols=241  Identities=18%  Similarity=0.168  Sum_probs=221.3

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH  152 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~  152 (358)
                      .+++||.|+..|+.+++++|++.|+++               +..+..|.||||+|+..   ++.+++++|++.|++++.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~---------------n~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~   63 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP---------------NFEIYDGISPIKLAMKF---RDSEAIKLLMKHGAIPDV   63 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC---------------CccCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCccc
Confidence            468999999999999999999999883               45777899999999765   999999999999999999


Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHH
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL  232 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l  232 (358)
                      .+..+.||||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.|++    ++..+..|.|||
T Consensus        64 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad----~~~~~~~g~tpL  139 (413)
T PHA02875         64 KYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD----PDIPNTDKFSPL  139 (413)
T ss_pred             cCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC----CCCCCCCCCCHH
Confidence            8889999999999999999999999999876667778899999999999999999999999965    677888999999


Q ss_pred             HHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCC-hHHHHHHHhCCC
Q 037701          233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGN-TPLHVLAAACRD  311 (358)
Q Consensus       233 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~-tpL~~a~~~~~~  311 (358)
                      |+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|   ++++..+..|. ||+|+|+..++.
T Consensus       140 h~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g---a~~n~~~~~~~~t~l~~A~~~~~~  215 (413)
T PHA02875        140 HLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSG---ANIDYFGKNGCVAALCYAIENNKI  215 (413)
T ss_pred             HHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC---CCCCcCCCCCCchHHHHHHHcCCH
Confidence            999999999999999999876 5889999999999999999999999999999   88888888875 899999999999


Q ss_pred             Cc-eeecCCcchHHHH---hhCCCchhhHhhh
Q 037701          312 SS-YFIVPDSDMYEAV---NKQNTSVEHIVRY  339 (358)
Q Consensus       312 ~~-~~Ll~~g~~~~~~---~~~g~t~l~~a~~  339 (358)
                      ++ ++|++.|+|++..   +..+.||++++..
T Consensus       216 ~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        216 DIVRLFIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence            99 9999999999876   5678999998754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.7e-41  Score=310.79  Aligned_cols=334  Identities=25%  Similarity=0.297  Sum_probs=252.1

Q ss_pred             ChhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      .||+|.|+..+.+++++.++.++ .++..+..|.||+|.|+..|+   .+++.+++.    .++.++..+..|.||+|+|
T Consensus       210 ~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~---~~i~~~l~~----~ga~~~~~~vr~~tplh~A  282 (1143)
T KOG4177|consen  210 FTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGH---LDIVKLLLQ----HGASVNVSTVRGETPLHMA  282 (1143)
T ss_pred             CCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccc---hhHHHHHHh----cccccCcccccccCcchhh
Confidence            36777777777777777777776 455577777777777777777   777777666    5666777777777777777


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcchhHH--------------------------------------------H-HH--
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESGVDWI--------------------------------------------R-WM--  113 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~--------------------------------------------~-~~--  113 (358)
                      +..+..+++++|++.|+++........+.+                                            - .+  
T Consensus       283 A~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~  362 (1143)
T KOG4177|consen  283 ARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLE  362 (1143)
T ss_pred             hccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhc
Confidence            777777777777777766532111110000                                            0 00  


Q ss_pred             ----HHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccC
Q 037701          114 ----LLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR  189 (358)
Q Consensus       114 ----~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~  189 (358)
                          -...+..+.||+|.|+.+   +..++++.+++.|.+++.....|.||||.|...++.++++.+++.++. .+..+.
T Consensus       363 ~~~~~~~a~~k~~~pl~la~~~---g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~-~~~~~~  438 (1143)
T KOG4177|consen  363 HGAQRRQAEEKGFTPLHLAVKS---GRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS-PNAKAK  438 (1143)
T ss_pred             cccccCcccccCCcchhhhccc---CchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCC-hhhHhh
Confidence                012334566777777554   777888888888888877777777777777777777777777777766 456677


Q ss_pred             CCCCHHHHHHHcC-CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCC---------------
Q 037701          190 HGWTSLHHAAYLG-HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPE---------------  253 (358)
Q Consensus       190 ~~~t~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~---------------  253 (358)
                      .|.||+|.|+..| ..+....+++.+.+    ++.....|.||||.|+..|+.+++..|++.++.               
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~----~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla  514 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGAD----PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLA  514 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCC----cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhh
Confidence            7788888887777 66777777777644    666677788888888877777777777665411               


Q ss_pred             -----------------CcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-ee
Q 037701          254 -----------------SYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YF  315 (358)
Q Consensus       254 -----------------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~  315 (358)
                                       .++.++..|+||||+|+..|+.++|++|+++|   ++++.+++.|+||||.|+..|..++ .+
T Consensus       515 ~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g---Adv~ak~~~G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  515 ADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG---ADVNAKDKLGYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             hhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCC---ccccccCCCCCChhhHHHHcChHHHHHH
Confidence                             13567788999999999999999999999999   9999999999999999999998888 99


Q ss_pred             ecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeeee
Q 037701          316 IVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIIN  354 (358)
Q Consensus       316 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  354 (358)
                      |+++||++|..+.+|.|||++|... +.+++++.|+...
T Consensus       592 Llk~GA~vna~d~~g~TpL~iA~~l-g~~~~~k~l~~~~  629 (1143)
T KOG4177|consen  592 LLKHGASVNAADLDGFTPLHIAVRL-GYLSVVKLLKVVT  629 (1143)
T ss_pred             HHHcCCCCCcccccCcchhHHHHHh-cccchhhHHHhcc
Confidence            9999999999999999999999985 9999999887654

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=6e-39  Score=285.45  Aligned_cols=328  Identities=16%  Similarity=0.126  Sum_probs=246.6

Q ss_pred             hhhhhhhhhh-ccc-eeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcC--CcHHHH
Q 037701           15 EPFNEIAKDE-LVS-IATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCR--HPAVVE   90 (358)
Q Consensus        15 ~~~~~ll~~~-~~~-~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~   90 (358)
                      ..++..++.- .++ ..|..|+||||+|+..|+....+++++|++    .|++++.+|..|.||||+|+..+  +.|+|+
T Consensus        21 ~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs----~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~   96 (672)
T PHA02730         21 KKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLS----RGVERLCRNNEGLTPLGVYSKRKYVKSQIVH   96 (672)
T ss_pred             HHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHh----CCCCCcccCCCCCChHHHHHHcCCCcHHHHH
Confidence            3466666665 555 588899999999999973112788888887    69999999999999999999876  799999


Q ss_pred             HHHHHHHhhhHh--h--------------hcchhHHHHHHH-h------h-c----ccCCcHHHHHHHHHhCCcHHHHHH
Q 037701           91 VLIKFAKKQSRE--L--------------ESGVDWIRWMLL-V------E-N----EEKNTALHEAVQSAAKGSVEMVAE  142 (358)
Q Consensus        91 ~Ll~~~~~~~~~--~--------------~~~~~~~~~~~~-~------~-~----~~~~t~l~~a~~~~~~~~~~~~~~  142 (358)
                      +|++.|++.+..  .              ....+.++.++. .      . +    ..|.+|++.+   +..+..+++++
T Consensus        97 ~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~---~~~~~~eIvkl  173 (672)
T PHA02730         97 LLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVT---TPNPRPEVLLW  173 (672)
T ss_pred             HHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHh---cCCCchHHHHH
Confidence            999997643111  0              112234555552 1      1 1    2678999999   55699999999


Q ss_pred             HHhcCCCCCC-------CCCCCc-cHHHHHH------hcCcHHHHHHHHHhCCcccccccCCCCCHHHH--HHHcCCHHH
Q 037701          143 ILENCPSADH-------RGPDGL-TTLHAAV------ICNAEDVIKLLLEKKKILTRERDRHGWTSLHH--AAYLGHSNI  206 (358)
Q Consensus       143 Ll~~~~~~~~-------~~~~~~-t~l~~a~------~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~--a~~~~~~~~  206 (358)
                      |+++|++++-       .+..+. |.||+++      ..++.+++++|+++|++ ++.++..|.||||+  +...++.++
T Consensus       174 Li~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~~~~~~~ei  252 (672)
T PHA02730        174 LLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYYWSCSTIDIEI  252 (672)
T ss_pred             HHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCcccHHH
Confidence            9999999851       233333 4555443      44688999999999998 68899999999995  555677999


Q ss_pred             HHHHhc--------------------------------CCCcccc----------------cccccCCCCCC--------
Q 037701          207 TSMMLK--------------------------------SEDDKIV----------------ALYKEDDRGMT--------  230 (358)
Q Consensus       207 ~~~Ll~--------------------------------~~~~~~~----------------~~~~~~~~g~t--------  230 (358)
                      +++|++                                .|.+..+                .+...+..|.+        
T Consensus       253 v~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~  332 (672)
T PHA02730        253 VKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNIL  332 (672)
T ss_pred             HHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHH
Confidence            999999                                4443211                00013445544        


Q ss_pred             -------------HHHHHHHcC---cHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC----hhHHHHHhcCcccccc
Q 037701          231 -------------ALHLAASQG---YERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR----GGVLKSLLENPYVISL  290 (358)
Q Consensus       231 -------------~l~~a~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~  290 (358)
                                   .|+.-...+   +.+++++|+++|++. +.. ..|.||||+|+..++    .+++++|+++|.. .+
T Consensus       333 ~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~-~d  409 (672)
T PHA02730        333 KRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGH-MA  409 (672)
T ss_pred             HhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-CcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCC-cc
Confidence                         566666655   689999999999874 654 789999999998875    7999999999821 36


Q ss_pred             ccCCCCCCChHHHH---HHHhCC-----C----C-ceeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeeee
Q 037701          291 IHGRDKNGNTPLHV---LAAACR-----D----S-SYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIIN  354 (358)
Q Consensus       291 ~~~~~~~g~tpL~~---a~~~~~-----~----~-~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  354 (358)
                      ++.+|..|.||||.   |...+.     .    . +++|+++|+|+|.+|..|+|||++|+.. ++.+++++|+...
T Consensus       410 IN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~-~~~eive~LI~~G  485 (672)
T PHA02730        410 INHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDV-NNIQFARRLLEYG  485 (672)
T ss_pred             ccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHh-CCHHHHHHHHHCC
Confidence            89999999999984   332221     1    1 3999999999999999999999999984 8899999998753

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=261.75  Aligned_cols=203  Identities=18%  Similarity=0.158  Sum_probs=114.5

Q ss_pred             cccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcC
Q 037701           68 QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC  147 (358)
Q Consensus        68 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~  147 (358)
                      ..|..|.||||+|+..|+.+++++|+++|++.+               .  .++.||||+|+..   ++.++++.|++.|
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n---------------~--~d~~TpLh~Aa~~---g~~eiV~lLL~~G   84 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKN---------------L--LENEFPLHQAATL---EDTKIVKILLFSG   84 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc---------------C--CCCCCHHHHHHHC---CCHHHHHHHHHCC
Confidence            345556666666666666666666666555421               1  1245666666443   5666666666666


Q ss_pred             CCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCC-CCHHHHHHHcCCHHHHHHHhcCCCcccccccccC-
Q 037701          148 PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHG-WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKED-  225 (358)
Q Consensus       148 ~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-  225 (358)
                      ++++.++..|.||||+|+..++.+++++|++.|++ .+.++..| .||||+|+..|+.+++++|++.+++.      .+ 
T Consensus        85 advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~------~d~  157 (284)
T PHA02791         85 MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST------FDL  157 (284)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc------ccc
Confidence            66666666666666666666666666666665555 23344444 35666666666666666666554320      11 


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcH-HHHHHHcCChhHHHHHhcCccccccccCCCCCCChHH
Q 037701          226 DRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA-RHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL  302 (358)
Q Consensus       226 ~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL  302 (358)
                      ..|.||||+|+..|+.+++++|++++++ ++.++..|.|| ||+|+..++.+++++|+++|   ++++.+|.. .+||
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G---a~in~~~~~-~~~l  230 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD---INIYSVNLE-NVLL  230 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHCC---CCCccCccc-CccC
Confidence            1355666666666666666666666554 35555555554 66666666666666666665   555666553 3555

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.2e-39  Score=287.42  Aligned_cols=288  Identities=15%  Similarity=0.145  Sum_probs=240.3

Q ss_pred             CchhhhhhhhhhccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhc-----CCcH
Q 037701           13 EIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKC-----RHPA   87 (358)
Q Consensus        13 ~~~~~~~ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~-----~~~~   87 (358)
                      +++.|+.|++.+.++.. ..+.|+++.+..... .+.+++++|++    .|++++..+..|.||||.|+..     +..+
T Consensus        17 ~~~~v~~ll~~~~~~~~-~~~~~~~~~yl~~~~-~~~~iv~~Ll~----~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCNPNEI-VNEYSIFQKYLQRDS-PSTDIVKLFIN----LGANVNGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcCChhhh-cccchHHHHHHhCCC-CCHHHHHHHHH----CCCCCCCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            46689999987643333 456777765554432 12788888887    5889999999999999999864     6689


Q ss_pred             HHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Q 037701           88 VVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVIC  167 (358)
Q Consensus        88 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  167 (358)
                      ++++|+++|++               ++..+..|.||||+|+.....++.+++++|+++|++++..+..|.||||+|++.
T Consensus        91 iv~~Ll~~Gad---------------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~  155 (489)
T PHA02798         91 IVKILIENGAD---------------INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQS  155 (489)
T ss_pred             HHHHHHHCCCC---------------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHc
Confidence            99999999998               557899999999999875333588999999999999999999999999999999


Q ss_pred             Cc---HHHHHHHHHhCCcccccccCCCCCHHHHHHHc----CCHHHHHHHhcCCCcccccccccCCCCCCHHH-------
Q 037701          168 NA---EDVIKLLLEKKKILTRERDRHGWTSLHHAAYL----GHSNITSMMLKSEDDKIVALYKEDDRGMTALH-------  233 (358)
Q Consensus       168 ~~---~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~----~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~-------  233 (358)
                      ++   .+++++|++.|++.....+..|.||||.++..    ++.+++++|++.|++    ++..+..+.++++       
T Consensus       156 ~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~----i~~~~~~~~~~~~~~l~~l~  231 (489)
T PHA02798        156 NHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI----INKENKSHKKKFMEYLNSLL  231 (489)
T ss_pred             CCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC----cccCCccccchHHHHHHHHH
Confidence            87   99999999999885444456899999998764    478999999999954    6667778888876       


Q ss_pred             HHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc
Q 037701          234 LAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS  313 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~  313 (358)
                      .+...+..+++.+|+.. . +++.+|..|+||||+|+..++.+++++|+++|   ++++.+|..|+||||+|++.++..+
T Consensus       232 ~~~~~~~~~i~~~l~~~-~-dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G---Adin~~d~~G~TpL~~A~~~~~~~i  306 (489)
T PHA02798        232 YDNKRFKKNILDFIFSY-I-DINQVDELGFNPLYYSVSHNNRKIFEYLLQLG---GDINIITELGNTCLFTAFENESKFI  306 (489)
T ss_pred             hhcccchHHHHHHHHhc-C-CCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC---CcccccCCCCCcHHHHHHHcCcHHH
Confidence            23455677888887764 4 57899999999999999999999999999999   9999999999999999999999888


Q ss_pred             -eeecCCcchHHHHhhCC
Q 037701          314 -YFIVPDSDMYEAVNKQN  330 (358)
Q Consensus       314 -~~Ll~~g~~~~~~~~~g  330 (358)
                       +.|++.|++++......
T Consensus       307 v~~lL~~~~~~~~i~~~~  324 (489)
T PHA02798        307 FNSILNKKPNKNTISYTY  324 (489)
T ss_pred             HHHHHccCCCHHHHHHHH
Confidence             99999999998665543

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-38  Score=291.15  Aligned_cols=330  Identities=17%  Similarity=0.150  Sum_probs=227.5

Q ss_pred             chhhhhhhhhh-ccceeccCCCceehhhhcc---ccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcH--
Q 037701           14 IEPFNEIAKDE-LVSIATHEKNTVLHVNIAS---QQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPA--   87 (358)
Q Consensus        14 ~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~--   87 (358)
                      ++.++.|+..+ +.+..|..|+||||+|+..   |+   .+++++|++    .+++++..+..|.||||+|+..|+.+  
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~---~~~v~~Ll~----~ga~v~~~~~~g~TpL~~Aa~~g~~~v~   84 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNN---VEVVKLLLD----SGTNPLHKNWRQLTPLEEYTNSRHVKVN   84 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCc---HHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCChhHH
Confidence            46688888766 5566799999999997665   66   888888877    58888999999999999999998854  


Q ss_pred             --HHHHHHHHHHh--hhH--------hhhcchhHHHHHH------HhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCC
Q 037701           88 --VVEVLIKFAKK--QSR--------ELESGVDWIRWML------LVENEEKNTALHEAVQSAAKGSVEMVAEILENCPS  149 (358)
Q Consensus        88 --~v~~Ll~~~~~--~~~--------~~~~~~~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~  149 (358)
                        +++.|++.+..  .+.        ......+.++.++      +.+|..|.||||.++. +..++.+++++|+++|++
T Consensus        85 ~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a-~~~~~~eivklLi~~Ga~  163 (661)
T PHA02917         85 KDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVM-TDDPVPEIIDLFIENGCS  163 (661)
T ss_pred             HHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHH-ccCCCHHHHHHHHHcCCC
Confidence              55677765321  110        0011123333333      3566778888886542 234788888888888888


Q ss_pred             CCCCCC---CC-----------ccHHHHHHh-----------cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCH
Q 037701          150 ADHRGP---DG-----------LTTLHAAVI-----------CNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHS  204 (358)
Q Consensus       150 ~~~~~~---~~-----------~t~l~~a~~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  204 (358)
                      ++..+.   .|           .||||+|+.           .++.+++++|+++|++ .+.++..|.||||+|+..|+.
T Consensus       164 vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        164 VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             ccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCC
Confidence            876543   23           488888875           3467888888888877 567788888888888888874


Q ss_pred             --HHHHHHhcCCCcccccccccCCCCCCHHHHHHHc---------CcHHHHHHHHhhCCCCc------ccc---------
Q 037701          205 --NITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ---------GYERVVRRIIRHCPESY------SIV---------  258 (358)
Q Consensus       205 --~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~---------~~~~~v~~Ll~~~~~~~------~~~---------  258 (358)
                        +++++|++ |++.....+..+..|.+|+++|++.         ...++++.|++.|++..      +..         
T Consensus       243 ~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~  321 (661)
T PHA02917        243 DIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISL  321 (661)
T ss_pred             cHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHH
Confidence              68888875 5442222234556667777777731         15678888888875421      001         


Q ss_pred             ---cCCCCcHHHHHH---HcCC--hhHHHHHhcCcc---------------------------ccccccCCCCCCChHHH
Q 037701          259 ---DNRGWNARHFAM---VSLR--GGVLKSLLENPY---------------------------VISLIHGRDKNGNTPLH  303 (358)
Q Consensus       259 ---~~~g~t~l~~a~---~~~~--~~~~~~Ll~~~~---------------------------~~~~~~~~~~~g~tpL~  303 (358)
                         ...+.+++|.+.   ..|.  .++++.|++.|.                           .+++++.++..|.||||
T Consensus       322 ~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~  401 (661)
T PHA02917        322 ILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIG  401 (661)
T ss_pred             HHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhH
Confidence               112334444433   3555  348888888764                           12334445567999999


Q ss_pred             HHHHhCCC-----------------------Cc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeeee
Q 037701          304 VLAAACRD-----------------------SS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIIN  354 (358)
Q Consensus       304 ~a~~~~~~-----------------------~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  354 (358)
                      .|++.++.                       .+ ++|+++|||++.+|..|+||||+|+. +++.+++++|+...
T Consensus       402 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~-~~~~~~v~~Ll~~G  475 (661)
T PHA02917        402 HLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVR-YNKQSLVSLLLESG  475 (661)
T ss_pred             HHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHH-cCCHHHHHHHHHCc
Confidence            99865431                       12 89999999999999999999999998 48899999988653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=261.89  Aligned_cols=215  Identities=23%  Similarity=0.308  Sum_probs=152.6

Q ss_pred             cccccCCchhhhhhhhhhc-cce-----eccCCCceehhhhccccccccchHHHHHHHHhhCccch-----hcccCCCCc
Q 037701            7 RDAAKGEIEPFNEIAKDEL-VSI-----ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLL-----LQVNDKGDT   75 (358)
Q Consensus         7 ~A~~~g~~~~~~~ll~~~~-~~~-----~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~g~t   75 (358)
                      .|++.|++..+..|+-..+ ..+     ...+|.|||-+|+++|+   .++++++++.....+...     +-..-.|-+
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH---~~vVeyLle~~~a~~e~~GsV~FDge~Iegap   86 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGH---ADVVEYLLEHCRASPEQGGSVRFDGETIEGAP   86 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCc---HHHHHHHHHHhcCCccCCceEEeCCcccCCCc
Confidence            5777777777777766531 111     45667788888888888   777777766532221111     112234667


Q ss_pred             hhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCC
Q 037701           76 PLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGP  155 (358)
Q Consensus        76 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~  155 (358)
                      ||-.|+..|+.++|+.|+++|++               ++.......|||..||.   .|+.+++++|+++|+|++..+.
T Consensus        87 pLWaAsaAGHl~vVk~L~~~ga~---------------VN~tT~TNStPLraACf---DG~leivKyLvE~gad~~Ianr  148 (615)
T KOG0508|consen   87 PLWAASAAGHLEVVKLLLRRGAS---------------VNDTTRTNSTPLRAACF---DGHLEIVKYLVEHGADPEIANR  148 (615)
T ss_pred             hhhHHhccCcHHHHHHHHHhcCc---------------cccccccCCccHHHHHh---cchhHHHHHHHHcCCCCccccc
Confidence            78888888888888888888876               33455555688888844   4888888888888888888888


Q ss_pred             CCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHH
Q 037701          156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA  235 (358)
Q Consensus       156 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a  235 (358)
                      .|.|.||.|+.+|+.+++++|++.|++ .+.++..|+|+||.|+..|+.+++++|+.+++.  ++   +|..|.|||..|
T Consensus       149 hGhTcLmIa~ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~--i~---~d~~GmtPL~~A  222 (615)
T KOG0508|consen  149 HGHTCLMIACYKGHVDIAQYLLEQGAD-VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK--ID---VDGHGMTPLLLA  222 (615)
T ss_pred             CCCeeEEeeeccCchHHHHHHHHhCCC-cchhcccCchHHHhhhhcccHHHHHHHHhCCce--ee---ecCCCCchHHHH
Confidence            888888888888888888888888877 567777888888888888888888888887764  22   355688888888


Q ss_pred             HHcCcHHHHHHHH
Q 037701          236 ASQGYERVVRRII  248 (358)
Q Consensus       236 ~~~~~~~~v~~Ll  248 (358)
                      +..|..++|++|+
T Consensus       223 a~tG~~~iVe~L~  235 (615)
T KOG0508|consen  223 AVTGHTDIVERLL  235 (615)
T ss_pred             hhhcchHHHHHHh
Confidence            8888777777777

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.9e-39  Score=229.79  Aligned_cols=207  Identities=23%  Similarity=0.318  Sum_probs=183.1

Q ss_pred             CcHHHHHHHHHhCCcHHHHHHHHhcCC-CCCCCCC-CCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037701          122 NTALHEAVQSAAKGSVEMVAEILENCP-SADHRGP-DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA  199 (358)
Q Consensus       122 ~t~l~~a~~~~~~~~~~~~~~Ll~~~~-~~~~~~~-~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  199 (358)
                      .++.+.+++.   ....-++.+++... .++.++. +|+||||+||..|+.+++.+|+.......+.+|..||||||.|+
T Consensus         4 ~~~~~~~~~~---~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    4 ASLGKAICEN---CEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             cchHHHHHhh---chHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence            4566666554   45555666666654 5666665 89999999999999999999998766667788999999999999


Q ss_pred             HcCCHHHHHHHhcC-CCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHH
Q 037701          200 YLGHSNITSMMLKS-EDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVL  278 (358)
Q Consensus       200 ~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  278 (358)
                      ..|+.++++.|+.+ +    .++|.++..|.|+||+|+.+|..+++++|+++++. ++++|..|.||||-|+.-|..+++
T Consensus        81 s~g~~evVk~Ll~r~~----advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvi  155 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSG----ADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVI  155 (226)
T ss_pred             hcCcHHHHHHHhcCCC----CCcceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhH
Confidence            99999999999998 5    55888999999999999999999999999999865 689999999999999999999999


Q ss_pred             HHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhC
Q 037701          279 KSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYG  340 (358)
Q Consensus       279 ~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~  340 (358)
                      ++|+.++   +.+|.+|+.|+||||+|...++.++ .+|++.|||++..|+.| ||+..++..
T Consensus       156 e~Li~~~---a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  156 EYLISQG---APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             HHHHhcC---CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHH
Confidence            9999999   8999999999999999988888888 99999999999999999 999888654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4e-37  Score=272.32  Aligned_cols=238  Identities=18%  Similarity=0.178  Sum_probs=128.9

Q ss_pred             hhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAA   81 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~   81 (358)
                      ++|+.|+..|+.+++++|++.| +++..+..|.||||+|+..|+   .+++++|++    .++..+..+..+.||||+|+
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~---~~~v~~Ll~----~ga~~~~~~~~~~t~L~~A~   76 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRD---SEAIKLLMK----HGAIPDVKYPDIESELHDAV   76 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC---HHHHHHHHh----CCCCccccCCCcccHHHHHH
Confidence            3556666666666666666555 344455556666666666655   555555544    24444444555556666666


Q ss_pred             hcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHH
Q 037701           82 KCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTL  161 (358)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  161 (358)
                      ..|+.+++++|++.|+...              ...+..|.||||+|+..   ++.+++++|++.|++++.++..|.|||
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~--------------~~~~~~g~tpL~~A~~~---~~~~iv~~Ll~~gad~~~~~~~g~tpL  139 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFAD--------------DVFYKDGMTPLHLATIL---KKLDIMKLLIARGADPDIPNTDKFSPL  139 (413)
T ss_pred             HCCCHHHHHHHHHcCCccc--------------ccccCCCCCHHHHHHHh---CCHHHHHHHHhCCCCCCCCCCCCCCHH
Confidence            6666666666665554321              12334455666666443   555666666666665555555555666


Q ss_pred             HHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCC-CCHHHHHHHcCc
Q 037701          162 HAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRG-MTALHLAASQGY  240 (358)
Q Consensus       162 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g-~t~l~~a~~~~~  240 (358)
                      |+|+..|+.+++++|+++|+. .+.++..|.||||+|+..|+.+++++|++.|++    ++..+..| .||+|+|+..++
T Consensus       140 h~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~----~n~~~~~~~~t~l~~A~~~~~  214 (413)
T PHA02875        140 HLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN----IDYFGKNGCVAALCYAIENNK  214 (413)
T ss_pred             HHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCcCCCCCCchHHHHHHHcCC
Confidence            666665666666666555554 344555555555555555555555555555543    33334333 245555555555


Q ss_pred             HHHHHHHHhhCCCCccc---ccCCCCcHHHHHH
Q 037701          241 ERVVRRIIRHCPESYSI---VDNRGWNARHFAM  270 (358)
Q Consensus       241 ~~~v~~Ll~~~~~~~~~---~~~~g~t~l~~a~  270 (358)
                      .+++++|+++|++. +.   .+..+.||++.++
T Consensus       215 ~~iv~~Ll~~gad~-n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        215 IDIVRLFIKRGADC-NIMFMIEGEECTILDMIC  246 (413)
T ss_pred             HHHHHHHHHCCcCc-chHhhcCCCchHHHHHHH
Confidence            55555555555442 22   2344555555543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-37  Score=279.23  Aligned_cols=258  Identities=13%  Similarity=0.130  Sum_probs=219.6

Q ss_pred             CCCCchhHHHHh--cCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHH--HhCCcHHHHHHHHhc
Q 037701           71 DKGDTPLHVAAK--CRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS--AAKGSVEMVAEILEN  146 (358)
Q Consensus        71 ~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~~~~Ll~~  146 (358)
                      ..+.|+++.+..  .++.++|++|+++|++               ++..+..|.||||.++..  ...+..++++.|+++
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad---------------vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~   98 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGAN---------------VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN   98 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCC---------------CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC
Confidence            446777775554  4478999999999998               557889999999998752  123568999999999


Q ss_pred             CCCCCCCCCCCccHHHHHHhcC---cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC---HHHHHHHhcCCCccccc
Q 037701          147 CPSADHRGPDGLTTLHAAVICN---AEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGH---SNITSMMLKSEDDKIVA  220 (358)
Q Consensus       147 ~~~~~~~~~~~~t~l~~a~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~  220 (358)
                      |+++|.++..|.||||+|+..+   +.+++++|+++|++ .+.++..|.||||+|+..++   .+++++|++.|++    
T Consensus        99 GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad----  173 (489)
T PHA02798         99 GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD----  173 (489)
T ss_pred             CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC----
Confidence            9999999999999999999875   78999999999998 67889999999999999988   8999999999965    


Q ss_pred             cccc-CCCCCCHHHHHHHc----CcHHHHHHHHhhCCCCcccccCCCCcHHH-------HHHHcCChhHHHHHhcCcccc
Q 037701          221 LYKE-DDRGMTALHLAASQ----GYERVVRRIIRHCPESYSIVDNRGWNARH-------FAMVSLRGGVLKSLLENPYVI  288 (358)
Q Consensus       221 ~~~~-~~~g~t~l~~a~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-------~a~~~~~~~~~~~Ll~~~~~~  288 (358)
                      ++.. +..|.||+|.++..    ++.+++++|+++|.+. +..+..|.++++       ++...++.+++.+|+. +   
T Consensus       174 in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~---  248 (489)
T PHA02798        174 INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII-NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-Y---  248 (489)
T ss_pred             cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc-ccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-c---
Confidence            5555 35788999998764    4799999999998764 777888888876       2344567788888776 3   


Q ss_pred             ccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeeee
Q 037701          289 SLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIIN  354 (358)
Q Consensus       289 ~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~  354 (358)
                      +++|.+|..|+||||+|+..++..+ ++|++.|||++.+|..|+|||++|+.. ++.++++.|+...
T Consensus       249 ~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~-~~~~iv~~lL~~~  314 (489)
T PHA02798        249 IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFEN-ESKFIFNSILNKK  314 (489)
T ss_pred             CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHc-CcHHHHHHHHccC
Confidence            7899999999999999999999888 999999999999999999999999985 8899998887653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.5e-37  Score=287.09  Aligned_cols=303  Identities=23%  Similarity=0.281  Sum_probs=246.9

Q ss_pred             hhhhcccccCCchhhhhhhhhhcc-ceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDELV-SIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAA   81 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~   81 (358)
                      +++|.|+..++.++..++...++. ...+.+|.||+|.|+..|.   .++++.+..    .+.+.+..+..|.||||.|+
T Consensus       343 t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~---~~~v~Lll~----~ga~~~~~gk~gvTplh~aa  415 (1143)
T KOG4177|consen  343 TPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGR---VSVVELLLE----AGADPNSAGKNGVTPLHVAA  415 (1143)
T ss_pred             ccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCc---hhHHHhhhh----ccCCcccCCCCCcceeeehh
Confidence            355666666666644444444421 2255566666666666666   555555555    35556666666666666666


Q ss_pred             hcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCC-cHHHHHHHHhcCCCCCCCCCCCccH
Q 037701           82 KCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKG-SVEMVAEILENCPSADHRGPDGLTT  160 (358)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~-~~~~~~~Ll~~~~~~~~~~~~~~t~  160 (358)
                      ..++..+|+.++++|++               .+..+..|+||+|+|...   + ..+....+++.|.++|.....|.||
T Consensus       416 ~~~~~~~v~l~l~~gA~---------------~~~~~~lG~T~lhvaa~~---g~~~~~~~~l~~~g~~~n~~s~~G~T~  477 (1143)
T KOG4177|consen  416 HYGNPRVVKLLLKRGAS---------------PNAKAKLGYTPLHVAAKK---GRYLQIARLLLQYGADPNAVSKQGFTP  477 (1143)
T ss_pred             hccCcceEEEEeccCCC---------------hhhHhhcCCChhhhhhhc---ccHhhhhhhHhhcCCCcchhccccCcc
Confidence            66666666666666666               446788889999999654   6 7788888889999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCc
Q 037701          161 LHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY  240 (358)
Q Consensus       161 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  240 (358)
                      ||.|...|+.++++.+++.++. .+.....+.+++|.+...+....++.++++|.    ..+.++..|.||||.|+.+|+
T Consensus       478 Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga----~v~~~~~r~~TpLh~A~~~g~  552 (1143)
T KOG4177|consen  478 LHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAADEDTVKVAKILLEHGA----NVDLRTGRGYTPLHVAVHYGN  552 (1143)
T ss_pred             hhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhhhhhHHHHHHHhhcCC----ceehhcccccchHHHHHhcCC
Confidence            9999999999999999987755 45667888999999999999999999999884    477788999999999999999


Q ss_pred             HHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCC
Q 037701          241 ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPD  319 (358)
Q Consensus       241 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~  319 (358)
                      .++|++|++++++. +.+++.|+||||.|+..|+.+++..|+++|   +++|+.|.+|.|||++|+..++..+ ++|...
T Consensus       553 v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G---A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  553 VDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHG---ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             chHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcC---CCCCcccccCcchhHHHHHhcccchhhHHHhc
Confidence            99999999998884 789999999999999999999999999999   9999999999999999999999999 999999


Q ss_pred             cch-----HHHHhhCCCchhhHhhh
Q 037701          320 SDM-----YEAVNKQNTSVEHIVRY  339 (358)
Q Consensus       320 g~~-----~~~~~~~g~t~l~~a~~  339 (358)
                      |++     ....+..|.+|.++...
T Consensus       629 ~~~~~~~~~~~e~~~g~~p~~v~e~  653 (1143)
T KOG4177|consen  629 TATPAATDPVKENRKGAVPEDVAEE  653 (1143)
T ss_pred             cCccccccchhhhhcccChhhHHHH
Confidence            998     99999999999999865

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-37  Score=219.64  Aligned_cols=209  Identities=26%  Similarity=0.299  Sum_probs=182.7

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcc-cCCcHHHHHHHHHhCCcHHHHHHHH-hcCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENE-EKNTALHEAVQSAAKGSVEMVAEIL-ENCPSA  150 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~~Ll-~~~~~~  150 (358)
                      +.++.+.+|......-++-+++.....              ++.++. +|+||||+||..   ++.+++.+|+ +.+..+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kS--------------L~~r~dqD~Rt~LHwa~S~---g~~eiv~fLlsq~nv~~   65 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKS--------------LNARDDQDGRTPLHWACSF---GHVEIVYFLLSQPNVKP   65 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhh--------------hhccccccCCceeeeeeec---CchhHHHHHHhcCCCCC
Confidence            456778888777777777776654311              444554 999999999766   9999999999 566778


Q ss_pred             CCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCC
Q 037701          151 DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT  230 (358)
Q Consensus       151 ~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  230 (358)
                      |-+|..|+||||.|+..|+.++|+.|+.+.....+..+..|.|+||+|+..|..+++++|++.|+.    ++.+|..|.|
T Consensus        66 ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~----i~~kD~~~qt  141 (226)
T KOG4412|consen   66 DDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL----IRIKDKQGQT  141 (226)
T ss_pred             CCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC----CcccccccCc
Confidence            888999999999999999999999999994444788999999999999999999999999999954    8889999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHH
Q 037701          231 ALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA  307 (358)
Q Consensus       231 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~  307 (358)
                      |||.|+..|+.+++++|+..++. +|..|+.|+||||.|...++.++..+|++.|   ++++..|+.| ||+..|+.
T Consensus       142 plHRAAavGklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g---Ad~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  142 PLHRAAAVGKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAG---ADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hhHHHHhccchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhc---cceeeccccC-chHHHHHH
Confidence            99999999999999999999854 6999999999999999899999999999999   8999999998 99888764

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.4e-35  Score=257.54  Aligned_cols=294  Identities=12%  Similarity=0.038  Sum_probs=228.2

Q ss_pred             cceeccCCCceehhhh-ccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHh-cCCcHHHHHHHHHHHhhhHhh
Q 037701           26 VSIATHEKNTVLHVNI-ASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAK-CRHPAVVEVLIKFAKKQSREL  103 (358)
Q Consensus        26 ~~~~~~~~~t~l~~a~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~-~~~~~~v~~Ll~~~~~~~~~~  103 (358)
                      .+..+.+|.+|+|+-+ .+|+   .|++++|+.    .|++++.++..|.+|+|+|+. .++.|++++|+++|++.....
T Consensus        64 ~~~~n~~~~~~~~~~~s~n~~---lElvk~LI~----~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~  136 (631)
T PHA02792         64 VDYKNINDFDIFEYLCSDNID---IELLKLLIS----KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNI  136 (631)
T ss_pred             CCcCccCCccHHHHHHHhccc---HHHHHHHHH----cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccc
Confidence            4556777777876644 4556   777887777    588999999989999999965 699999999999998743222


Q ss_pred             hcch---------------------hHHHHHHHhhcccCCcHHHHHHHHHhCC-------cHHHHHHHHhcCCCCCCCCC
Q 037701          104 ESGV---------------------DWIRWMLLVENEEKNTALHEAVQSAAKG-------SVEMVAEILENCPSADHRGP  155 (358)
Q Consensus       104 ~~~~---------------------~~~~~~~~~~~~~~~t~l~~a~~~~~~~-------~~~~~~~Ll~~~~~~~~~~~  155 (358)
                      ..|.                     +.+.+.++..+..|.||||+|+.+   +       ..++++.|+++|++++.++.
T Consensus       137 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~---~s~~~~~~~~~v~k~Li~~g~~~~~~d~  213 (631)
T PHA02792        137 QYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIIT---RSQDGYATSLDVINYLISHEKEMRYYTY  213 (631)
T ss_pred             ccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhh---CCcccccCCHHHHHHHHhCCCCcCccCC
Confidence            2111                     112345678889999999999886   5       79999999999999999999


Q ss_pred             CCccHHHHHHhcC--cHHHHHHHHHhCCccccc------------ccC-------------CCC----------------
Q 037701          156 DGLTTLHAAVICN--AEDVIKLLLEKKKILTRE------------RDR-------------HGW----------------  192 (358)
Q Consensus       156 ~~~t~l~~a~~~~--~~~~v~~Ll~~~~~~~~~------------~~~-------------~~~----------------  192 (358)
                      .|.||||+|+.+.  ..|++++|+...-.....            +..             .|.                
T Consensus       214 ~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~  293 (631)
T PHA02792        214 REHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNI  293 (631)
T ss_pred             CCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhh
Confidence            9999999999999  789999988642110000            000             011                


Q ss_pred             --------------CHHHHHHHcC--CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcc
Q 037701          193 --------------TSLHHAAYLG--HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYS  256 (358)
Q Consensus       193 --------------t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~  256 (358)
                                    ..||.-...+  +.+++++|++.|.+    ..  ......+++.|+..|+.+++++|+++|++ ++
T Consensus       294 ~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~----~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN  366 (631)
T PHA02792        294 IISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGAT----LY--RFKHINKYFQKFDNRDPKVVEYILKNGNV-VV  366 (631)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCc----cc--cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hh
Confidence                          1133333444  56889999999865    21  22356678999999999999999999887 47


Q ss_pred             cccCCC--CcHHHHHHHcCChh---HHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCC
Q 037701          257 IVDNRG--WNARHFAMVSLRGG---VLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQN  330 (358)
Q Consensus       257 ~~~~~g--~t~l~~a~~~~~~~---~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g  330 (358)
                      .+|..|  .||||+|+.....+   ++++++++|   +++|.+|..|.||||+|+..++..+ ++|+++|++++.+|..|
T Consensus       367 ~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G---ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G  443 (631)
T PHA02792        367 EDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI---DDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYG  443 (631)
T ss_pred             hhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC---CccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            777764  69999987766553   578889999   8999999999999999999998888 99999999999999999


Q ss_pred             CchhhHhhh
Q 037701          331 TSVEHIVRY  339 (358)
Q Consensus       331 ~t~l~~a~~  339 (358)
                      .||+++|..
T Consensus       444 ~TpL~~A~~  452 (631)
T PHA02792        444 STCIGICVI  452 (631)
T ss_pred             CCHHHHHHH
Confidence            999999954

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=236.65  Aligned_cols=184  Identities=23%  Similarity=0.277  Sum_probs=167.7

Q ss_pred             hhhhcccccCCchhhhhhhhhh----------ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCC
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE----------LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDK   72 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~----------~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   72 (358)
                      |||..||++|..++|++|+++-          .++-...+|-+||..|+..|+   .++|+.|+.    .++.+|.....
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGH---l~vVk~L~~----~ga~VN~tT~T  116 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGH---LEVVKLLLR----RGASVNDTTRT  116 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCc---HHHHHHHHH----hcCcccccccc
Confidence            6899999999999999999962          244467889999999999999   888888877    36889999899


Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH  152 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~  152 (358)
                      ..|||--||.-|+.++|++|+++|++               ++..+..|.|+||.|+.   +|+.+++++|++.|+|+|.
T Consensus       117 NStPLraACfDG~leivKyLvE~gad---------------~~IanrhGhTcLmIa~y---kGh~~I~qyLle~gADvn~  178 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGAD---------------PEIANRHGHTCLMIACY---KGHVDIAQYLLEQGADVNA  178 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCC---------------CcccccCCCeeEEeeec---cCchHHHHHHHHhCCCcch
Confidence            99999999999999999999999999               55789999999999955   5999999999999999999


Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKS  213 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  213 (358)
                      ++..|.|+||.|++.|+.+++++|+.+|+..  ..|..|.|||-.|+..|+.++|++|++.
T Consensus       179 ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  179 KSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             hcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            9999999999999999999999999999874  3577899999999999999999999954

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=8.2e-34  Score=242.99  Aligned_cols=208  Identities=25%  Similarity=0.314  Sum_probs=191.1

Q ss_pred             CcHHHHHHHHHhCCcHHHHHHHHhc-CCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037701          122 NTALHEAVQSAAKGSVEMVAEILEN-CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAY  200 (358)
Q Consensus       122 ~t~l~~a~~~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~  200 (358)
                      ...+..|++   .|..+.++.+++. |.+++..|.+|.++||+|+.+++.+++++|+++|++.+..-..-+.||||+|++
T Consensus        45 ~~~~v~A~q---~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar  121 (600)
T KOG0509|consen   45 LDDIVKATQ---YGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAAR  121 (600)
T ss_pred             hhhhhhHhh---cchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHH
Confidence            355666755   4999999999998 999999999999999999999999999999999999666656889999999999


Q ss_pred             cCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHH
Q 037701          201 LGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKS  280 (358)
Q Consensus       201 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  280 (358)
                      +|+..++++|+++|++    ++.+|.+|.+|+|.|++.++..+|-+|+.++.+ ++.+|.+|+||||+|+.+++...+..
T Consensus       122 ~G~~~vv~lLlqhGAd----pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  122 NGHISVVDLLLQHGAD----PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRR  196 (600)
T ss_pred             cCcHHHHHHHHHcCCC----CceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHH
Confidence            9999999999999966    778999999999999999999999999999855 69999999999999999999988999


Q ss_pred             HhcCccccccccCCC-CCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhC
Q 037701          281 LLENPYVISLIHGRD-KNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYG  340 (358)
Q Consensus       281 Ll~~~~~~~~~~~~~-~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~  340 (358)
                      |+..+   +.+..+| ..|+||||.|+..|+..+ .++++.|++.+.+|.+|+||+++|.+.
T Consensus       197 LL~f~---a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  197 LLKFG---ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHhc---ccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999   7888888 889999999999999998 977888899999999999999999664

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=7.2e-33  Score=237.21  Aligned_cols=209  Identities=25%  Similarity=0.318  Sum_probs=189.2

Q ss_pred             CchhHHHHhcCCcHHHHHHHHH-HHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC
Q 037701           74 DTPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH  152 (358)
Q Consensus        74 ~t~Lh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~  152 (358)
                      ..-++.|++.|..+-|+.+++. |.+               ++..|.+|.|+||+|+.+   ++.+++++|+++|+++|.
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~---------------v~~~D~~g~tlLHWAAiN---Nrl~v~r~li~~gadvn~  106 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGES---------------VNNPDREGVTLLHWAAIN---NRLDVARYLISHGADVNA  106 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcC---------------CCCCCcCCccceeHHHHc---CcHHHHHHHHHcCCCccc
Confidence            5678899999999999999998 766               446888999999999665   999999999999999999


Q ss_pred             CC-CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCH
Q 037701          153 RG-PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTA  231 (358)
Q Consensus       153 ~~-~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~  231 (358)
                      .. .-+.||||+|+++|+..++.+|+++|++ ++.+|.+|.+|+|.|+..++.-++-+|+..+.    +++.+|.+|+||
T Consensus       107 ~gG~l~stPLHWAar~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~----d~d~~D~~grTp  181 (600)
T KOG0509|consen  107 IGGVLGSTPLHWAARNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGA----DIDLRDNNGRTP  181 (600)
T ss_pred             cCCCCCCCcchHHHHcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhcc----cCCCcCCCCCCH
Confidence            88 5578999999999999999999999999 67899999999999999999999999999994    488899999999


Q ss_pred             HHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHh
Q 037701          232 LHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAA  308 (358)
Q Consensus       232 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~  308 (358)
                      ||+|+.+|....++.|++.++...-..|..|.||||+|+..|+..+++.+++-+   ++.+.+|.+|.||+.+|.+.
T Consensus       182 LmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~---~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  182 LMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGG---ADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcC---CcccccccCCCCHHHHHHHh
Confidence            999999999888999999988754434499999999999999999999666666   78888999999999999876

>PHA02792 ankyrin-like protein; Provisional

Probab=99.98  E-value=1.8e-31  Score=235.45  Aligned_cols=283  Identities=15%  Similarity=0.102  Sum_probs=219.2

Q ss_pred             hcccccCCchhhhhhhhhh-ccceeccCCCceehhhhc-cccccccchHHHHHHHHhhCcc-------------------
Q 037701            6 YRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIA-SQQEGERVSTEFVEGILEMCPS-------------------   64 (358)
Q Consensus         6 ~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~-~~~~~~~~~~~~l~~~~~~~~~-------------------   64 (358)
                      +.|...|++|++++|+++| +++..+..+.+|+|+|+. .++   .+++++|++.    |+                   
T Consensus        77 ~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~---~eivk~Ll~~----Gad~~~~~~~g~~~~~~~~~~  149 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPN---VDVFKLLLDK----GIPTCSNIQYGYKIIIEQITR  149 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCC---hHHHHHHHHC----CCCcccccccCcchhhhhccc
Confidence            3567799999999999998 566688889999999966 588   9999999873    22                   


Q ss_pred             -----------------chhcccCCCCchhHHHHhcC-------CcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhccc
Q 037701           65 -----------------LLLQVNDKGDTPLHVAAKCR-------HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE  120 (358)
Q Consensus        65 -----------------~~~~~~~~g~t~Lh~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (358)
                                       .++..|..|.||||+|+..+       +.++++.|+++|++               ++..|..
T Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~---------------~~~~d~~  214 (631)
T PHA02792        150 AEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE---------------MRYYTYR  214 (631)
T ss_pred             ccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC---------------cCccCCC
Confidence                             22345667999999999999       89999999999998               4467888


Q ss_pred             CCcHHHHHHHHHhCC--cHHHHHHHHhcCCCC-------------CC------CCC-------CCcc-------------
Q 037701          121 KNTALHEAVQSAAKG--SVEMVAEILENCPSA-------------DH------RGP-------DGLT-------------  159 (358)
Q Consensus       121 ~~t~l~~a~~~~~~~--~~~~~~~Ll~~~~~~-------------~~------~~~-------~~~t-------------  159 (358)
                      |.||||+|+.+   .  ..++++.|++..-+.             ..      .|.       .|.+             
T Consensus       215 g~t~l~~~~~~---~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~  291 (631)
T PHA02792        215 EHTTLYYYVDK---CDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRN  291 (631)
T ss_pred             CChHHHHHHHc---ccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhh
Confidence            99999999876   5  677888887642110             00      000       0111             


Q ss_pred             -----------------HHHHHHhcC--cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccc
Q 037701          160 -----------------TLHAAVICN--AEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA  220 (358)
Q Consensus       160 -----------------~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  220 (358)
                                       .||.-...+  +.+++++|++.|+...   .......++.|+..|+.+++++|+++|++    
T Consensus       292 ~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GAD----  364 (631)
T PHA02792        292 NIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNV----  364 (631)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCc----
Confidence                             122223333  5788999999998743   22356678899999999999999999965    


Q ss_pred             ccccCCC--CCCHHHHHHHcCcH---HHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCC
Q 037701          221 LYKEDDR--GMTALHLAASQGYE---RVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRD  295 (358)
Q Consensus       221 ~~~~~~~--g~t~l~~a~~~~~~---~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  295 (358)
                      ++.++..  +.||||.|+.....   +++++|++++++ ++.+|..|.||||+|+..++.+++++|+++|   ++++.+|
T Consensus       365 IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~G---ADIN~kD  440 (631)
T PHA02792        365 VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNG---ADINITT  440 (631)
T ss_pred             hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCC---CCCCCcC
Confidence            6666666  46999998776654   468888999877 5889999999999999999999999999999   9999999


Q ss_pred             CCCChHHHHHHHhC--C--------CCc-eeecCCcchHH
Q 037701          296 KNGNTPLHVLAAAC--R--------DSS-YFIVPDSDMYE  324 (358)
Q Consensus       296 ~~g~tpL~~a~~~~--~--------~~~-~~Ll~~g~~~~  324 (358)
                      ..|.|||++|+...  .        ..+ ++|+++|.++.
T Consensus       441 ~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        441 KYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             CCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            99999999998622  1        223 88888887764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=195.10  Aligned_cols=176  Identities=16%  Similarity=0.198  Sum_probs=93.5

Q ss_pred             CCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC
Q 037701           71 DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA  150 (358)
Q Consensus        71 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~  150 (358)
                      ..+.||||+|+..|+.++|+.|++.+                  +..+..|.||||+|+.. ..++.+++++|++.|+++
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~------------------n~~~~~g~TpLh~a~~~-~~~~~eiv~~Ll~~gadv   79 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFV------------------NDCNDLYETPIFSCLEK-DKVNVEILKFLIENGADV   79 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhh------------------hccCccCCCHHHHHHHc-CCCCHHHHHHHHHCCCCC
Confidence            34566777777777777777666542                  23556666777766542 123566666666666666


Q ss_pred             CCCC-CCCccHHHHHHhc---CcHHHHHHHHHhCCcccccccCCCCCHHHHHHH--cCCHHHHHHHhcCCCccccccccc
Q 037701          151 DHRG-PDGLTTLHAAVIC---NAEDVIKLLLEKKKILTRERDRHGWTSLHHAAY--LGHSNITSMMLKSEDDKIVALYKE  224 (358)
Q Consensus       151 ~~~~-~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~  224 (358)
                      +.++ ..|.||||+|+..   ++.+++++|+++|++ ++.++..|.||||+|+.  .++.+++++|++.|.+    ++.+
T Consensus        80 n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad----in~~  154 (209)
T PHA02859         80 NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS----FLNK  154 (209)
T ss_pred             CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----cccc
Confidence            6664 3566666665532   245555555555555 34455555555555543  2344555555554422    3444


Q ss_pred             CCCCCCHHHH-HHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHH
Q 037701          225 DDRGMTALHL-AASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMV  271 (358)
Q Consensus       225 ~~~g~t~l~~-a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  271 (358)
                      +..|.||||. |+..++.+++++|++.|.+ ++.+|..|+|||++|..
T Consensus       155 d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad-i~~~d~~g~tpl~la~~  201 (209)
T PHA02859        155 DFDNNNILYSYILFHSDKKIFDFLTSLGID-INETNKSGYNCYDLIKF  201 (209)
T ss_pred             cCCCCcHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhh
Confidence            4445555553 2333444555555544433 24444445555554443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=194.36  Aligned_cols=177  Identities=15%  Similarity=0.138  Sum_probs=139.0

Q ss_pred             cccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcC--cHHHHHHHHHhCCccccccc-CCCCCH
Q 037701          118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICN--AEDVIKLLLEKKKILTRERD-RHGWTS  194 (358)
Q Consensus       118 ~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~~-~~~~t~  194 (358)
                      ...+.|||++|+..   ++.+.++.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++. +.++ ..|.||
T Consensus        18 ~~~~~~pL~~A~~~---~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~Tp   90 (209)
T PHA02859         18 FYRYCNPLFYYVEK---DDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSA   90 (209)
T ss_pred             hhccCcHHHHHHHh---CcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCH
Confidence            45667889999766   888888888875   4556777889999888754  788899999888884 4444 578889


Q ss_pred             HHHHHHc---CCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHH--cCcHHHHHHHHhhCCCCcccccCCCCcHHHH-
Q 037701          195 LHHAAYL---GHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS--QGYERVVRRIIRHCPESYSIVDNRGWNARHF-  268 (358)
Q Consensus       195 l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-  268 (358)
                      ||+|+..   ++.+++++|+++|++    ++.++..|.||||+|+.  .++.+++++|++.+.+ ++.+|..|.||||. 
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~gad----in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~  165 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGSS----ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSY  165 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHH
Confidence            8887653   367888888888854    77788888888888775  3578888888888766 47788888888885 


Q ss_pred             HHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhC
Q 037701          269 AMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC  309 (358)
Q Consensus       269 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~  309 (358)
                      |+..++.+++++|+++|   ++++.+|..|.|||++|...+
T Consensus       166 a~~~~~~~iv~~Ll~~G---adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        166 ILFHSDKKIFDFLTSLG---IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHhcCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHhhhh
Confidence            55677888888888888   788888888888888887654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=209.47  Aligned_cols=219  Identities=13%  Similarity=0.083  Sum_probs=182.6

Q ss_pred             HHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHH
Q 037701           52 TEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS  131 (358)
Q Consensus        52 ~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~  131 (358)
                      ++.+.+.+-..+.+++....+|     +|+..+..|++++|+++|++......         +-..+..++|+||+++.+
T Consensus        61 ~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~---------~~~~~~~~~~~L~~~~~n  126 (437)
T PHA02795         61 VDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSI---------IIKNCNSVQDLLLYYLSN  126 (437)
T ss_pred             HHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhh---------hhhccccccHHHHHHHHh
Confidence            5566665556677888877777     89999999999999999998542100         114777899999999873


Q ss_pred             HhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccc-----cCCCCCHHHHHHHcCCHHH
Q 037701          132 AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER-----DRHGWTSLHHAAYLGHSNI  206 (358)
Q Consensus       132 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~-----~~~~~t~l~~a~~~~~~~~  206 (358)
                       ..++.+++++|+++|++++..  ++.||+|.|+..++.+++++|+.+|+...+..     +..+.|++|.|+..++.++
T Consensus       127 -~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eI  203 (437)
T PHA02795        127 -AYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEI  203 (437)
T ss_pred             -cCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHH
Confidence             349999999999999999874  45899999999999999999999997544332     2347789999999999999


Q ss_pred             HHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC--------hhHH
Q 037701          207 TSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR--------GGVL  278 (358)
Q Consensus       207 ~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~--------~~~~  278 (358)
                      +++|+++|++    ++.++..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+        .+++
T Consensus       204 ve~LIs~GAD----IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIv  278 (437)
T PHA02795        204 YKLCIPYIED----INQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKIL  278 (437)
T ss_pred             HHHHHhCcCC----cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHH
Confidence            9999999955    888999999999999999999999999999876 58899999999999999884        5899


Q ss_pred             HHHhcCccccccccCCC
Q 037701          279 KSLLENPYVISLIHGRD  295 (358)
Q Consensus       279 ~~Ll~~~~~~~~~~~~~  295 (358)
                      +.|+++|   ++++...
T Consensus       279 elLL~~g---adI~~~~  292 (437)
T PHA02795        279 EILLREP---LSIDCIK  292 (437)
T ss_pred             HHHHhCC---CCCCchh
Confidence            9999988   5655443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.96  E-value=7.7e-30  Score=229.22  Aligned_cols=318  Identities=17%  Similarity=0.172  Sum_probs=280.0

Q ss_pred             CChhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHH
Q 037701            1 MNPDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHV   79 (358)
Q Consensus         1 ~~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~   79 (358)
                      ++++|-.||..|..|+++.|+.++ +..-+|+.|.+||.+|+-.|+   ..+|+.|+..   ..+.-.+.|..+.|+|-+
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh---~tvV~~llk~---ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGH---ITVVQDLLKA---HADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCc---hHHHHHHHhh---hhhhhhhcccccCceEEE
Confidence            468899999999999999999998 455599999999999999999   7777777663   344445577889999999


Q ss_pred             HHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCC--CCC
Q 037701           80 AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRG--PDG  157 (358)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~--~~~  157 (358)
                      ||..|..++|++||.+|++..               .++...+|||..|   ...+..++|+.|+..|..+|.+.  +-|
T Consensus       831 acsggr~~vvelLl~~ganke---------------hrnvsDytPlsla---~Sggy~~iI~~llS~GseInSrtgSklg  892 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGANKE---------------HRNVSDYTPLSLA---RSGGYTKIIHALLSSGSEINSRTGSKLG  892 (2131)
T ss_pred             ecCCCcchHHHHHHHhhcccc---------------ccchhhcCchhhh---cCcchHHHHHHHhhcccccccccccccC
Confidence            999999999999999999843               5677788999999   55699999999999999888765  458


Q ss_pred             ccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHH
Q 037701          158 LTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS  237 (358)
Q Consensus       158 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~  237 (358)
                      ..||++|...|+.+.++.|++.|.+++.....+.+|.|.+|+-.|+.+++.+|+.+.+    .+..+-+.|.|||+.++.
T Consensus       893 isPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~a----nvehRaktgltplme~As  968 (2131)
T KOG4369|consen  893 ISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQA----NVEHRAKTGLTPLMEMAS  968 (2131)
T ss_pred             cchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhh----hhhhhcccCCcccchhhc
Confidence            8999999999999999999999999777777888999999999999999999999874    466778899999999999


Q ss_pred             cCcHHHHHHHHhhCCCCccc--ccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-e
Q 037701          238 QGYERVVRRIIRHCPESYSI--VDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-Y  314 (358)
Q Consensus       238 ~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~  314 (358)
                      .|..++-+.|+..|++. +.  .-....|+|..++..||...+..|+...   +.+..++++|.|+|-+|+..+.... .
T Consensus       969 gGyvdvg~~li~~gad~-nasPvp~T~dtalti~a~kGh~kfv~~lln~~---atv~v~NkkG~T~Lwla~~Gg~lss~~ 1044 (2131)
T KOG4369|consen  969 GGYVDVGNLLIAAGADT-NASPVPNTWDTALTIPANKGHTKFVPKLLNGD---ATVRVPNKKGCTVLWLASAGGALSSCP 1044 (2131)
T ss_pred             CCccccchhhhhccccc-ccCCCCCcCCccceeecCCCchhhhHHhhCCc---cceecccCCCCcccchhccCCccccch
Confidence            99999999999998764 32  2234568999999999999999999877   7888899999999999999998888 9


Q ss_pred             eecCCcchHHHHhhCCCchhhHhhhCCCCccccccee
Q 037701          315 FIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLL  351 (358)
Q Consensus       315 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  351 (358)
                      +|+++++|++..|+...++++.|-+. +++++|++..
T Consensus      1045 il~~~~ad~d~qdnr~~S~~maafRK-gh~~iVk~mv 1080 (2131)
T KOG4369|consen 1045 ILVSSVADADQQDNRTNSRTMAAFRK-GHFAIVKKMV 1080 (2131)
T ss_pred             HHhhcccChhhhhcccccccHHHHHh-chhheecccc
Confidence            99999999999999999999988774 9999999864

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=209.29  Aligned_cols=213  Identities=10%  Similarity=0.009  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCC------CCCCCCccHH
Q 037701           88 VVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD------HRGPDGLTTL  161 (358)
Q Consensus        88 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~------~~~~~~~t~l  161 (358)
                      .-++++.+|++.               +....++     +|+.   .+..++++.|+++|++++      .++..++|+|
T Consensus        64 ~~~~~~~~~~~i---------------~~~~~~~-----~~~~---~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L  120 (437)
T PHA02795         64 LYDYFRIHRDNI---------------DQYIVDR-----LFAY---ITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLL  120 (437)
T ss_pred             HHHHHHHcCcch---------------hhhhhhh-----HHhh---cchHHHHHHHHhcccccchhhhhhhccccccHHH
Confidence            346677777763               3334444     6644   489999999999999988      6777899999


Q ss_pred             HHHHh--cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccc--ccccCCCCCCHHHHHHH
Q 037701          162 HAAVI--CNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA--LYKEDDRGMTALHLAAS  237 (358)
Q Consensus       162 ~~a~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~~~~g~t~l~~a~~  237 (358)
                      |+++.  .++.+++++|+++|++. +.  .++.||+|.|+..++.+++++|+++|++....  .+..+..+.+++|.|+.
T Consensus       121 ~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~  197 (437)
T PHA02795        121 LYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDE  197 (437)
T ss_pred             HHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHh
Confidence            99999  89999999999999995 33  35589999999999999999999999642111  11112357799999999


Q ss_pred             cCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCC------
Q 037701          238 QGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRD------  311 (358)
Q Consensus       238 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~------  311 (358)
                      .+..+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|   ++++.+|..|.||||+|+..|+.      
T Consensus       198 ~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G---AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~  273 (437)
T PHA02795        198 PTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENG---ANVNAVMSNGYTCLDVAVDRGSVIARRET  273 (437)
T ss_pred             cCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCCccccccc
Confidence            9999999999999876 5899999999999999999999999999999   99999999999999999999853      


Q ss_pred             --Cc-eeecCCcchHHHHhhCC
Q 037701          312 --SS-YFIVPDSDMYEAVNKQN  330 (358)
Q Consensus       312 --~~-~~Ll~~g~~~~~~~~~g  330 (358)
                        .+ ++|+++|++++.....+
T Consensus       274 ~~eIvelLL~~gadI~~~~~~~  295 (437)
T PHA02795        274 HLKILEILLREPLSIDCIKLAI  295 (437)
T ss_pred             HHHHHHHHHhCCCCCCchhHHh
Confidence              45 99999999887765443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=1.5e-26  Score=201.34  Aligned_cols=258  Identities=20%  Similarity=0.207  Sum_probs=154.7

Q ss_pred             CChhhhcccccCCchhhhhhhhhhccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            1 MNPDLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         1 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      +++.+..|++.||++.+..+|+....      +.-++..--                    ....++..|.+|.|.||.|
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~------r~~~l~~~t--------------------rsds~n~qd~~gfTalhha   56 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKG------RSGLLFFTT--------------------RSDSHNLQDYSGFTLLHHA   56 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCC------CCCCCCCCC--------------------CCccccccCccchhHHHHH
Confidence            45678899999999999999987411      111111111                    1222444555666666666


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccH
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTT  160 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  160 (358)
                      |.+|+.+++++|+++.+-               +...+..|.+|||+|++.   |+.+++++++.++..+|...-.|.||
T Consensus        57 ~Lng~~~is~llle~ea~---------------ldl~d~kg~~plhlaaw~---g~~e~vkmll~q~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   57 VLNGQNQISKLLLDYEAL---------------LDLCDTKGILPLHLAAWN---GNLEIVKMLLLQTDILNAVNIENETP  118 (854)
T ss_pred             HhcCchHHHHHHhcchhh---------------hhhhhccCcceEEehhhc---CcchHHHHHHhcccCCCcccccCcCc
Confidence            666666666666665544               344555666666666333   66666666666665555555566666


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccc----cccccCCCCCCHHHHHH
Q 037701          161 LHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIV----ALYKEDDRGMTALHLAA  236 (358)
Q Consensus       161 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~----~~~~~~~~g~t~l~~a~  236 (358)
                      ||.|++.++.+++.+|+.++++ ...++.++.|++.+|++.|..++++.|++..-....    .-..++..+-+|+|.|+
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaa  197 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAA  197 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhh
Confidence            6666666666666666666655 345566666666666666666666666554111000    01123445667777777


Q ss_pred             HcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHh
Q 037701          237 SQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAA  308 (358)
Q Consensus       237 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~  308 (358)
                      ++|+.++++.|++.+.+ +|.....| |+||.|+.+|..+++.+|++.|   .+.+.++.+|+|+|.+..+.
T Consensus       198 kngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~evvr~ll~~g---in~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  198 KNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEVVRFLLEIG---INTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchhhhHHHhhc---cccccccccchHHHHHHHhc
Confidence            77777777777776544 35443333 6777777777777777777777   56666777777777766554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=4e-27  Score=175.48  Aligned_cols=264  Identities=20%  Similarity=0.195  Sum_probs=218.6

Q ss_pred             ceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHH
Q 037701           35 TVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWML  114 (358)
Q Consensus        35 t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  114 (358)
                      ..+..++..|.   .+.-+.+..-++.      -++..|.+-+-.+...++.+++...+...++.              +
T Consensus        33 a~~~~~~~m~~---t~p~~~l~~~~s~------~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~--------------~   89 (296)
T KOG0502|consen   33 AELFEQVEMGT---TEPRCALTAEISA------LRNALGESLLTVAVRSGNSDVAVQSAQLDPDA--------------I   89 (296)
T ss_pred             HHHHHHhhccc---cchhHHHHHHHHH------HHHhcCCcccchhhhcCCcHHHHHhhccCCCC--------------C
Confidence            34555666665   5544455443222      14456777788888899988888877655443              2


Q ss_pred             HhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCH
Q 037701          115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTS  194 (358)
Q Consensus       115 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~  194 (358)
                      ...+++|.+.++.+.   -.++......++.++...|..+..+.+|+.+++...+.+.+..+.+..   .+..|..|.||
T Consensus        90 ~~t~p~g~~~~~v~a---p~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTp  163 (296)
T KOG0502|consen   90 DETDPEGWSALLVAA---PCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTP  163 (296)
T ss_pred             CCCCchhhhhhhhcC---CCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchH
Confidence            246777999999994   447888899999999999998889999999999888888777766543   56779999999


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC
Q 037701          195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR  274 (358)
Q Consensus       195 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  274 (358)
                      |.+|+..|+...+++|++.|++    ++...+...++|.+|++.|..++|++|+..+.+ +|..|.+|.|||-||++-++
T Consensus       164 LiWAaa~G~i~vV~fLL~~GAd----p~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnh  238 (296)
T KOG0502|consen  164 LIWAAAKGHIPVVQFLLNSGAD----PDALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNH  238 (296)
T ss_pred             hHHHHhcCchHHHHHHHHcCCC----hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCCh
Confidence            9999999999999999999977    444567778999999999999999999999776 69999999999999999999


Q ss_pred             hhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCceeecCCcchHHHHhhCCCchhh
Q 037701          275 GGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEH  335 (358)
Q Consensus       275 ~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  335 (358)
                      .++++.|+..|   ++++..+..|++++.+|+..|+..++..+++-++.+..|+..++|+|
T Consensus       239 vkcve~Ll~sG---Ad~t~e~dsGy~~mdlAValGyr~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  239 VKCVESLLNSG---ADVTQEDDSGYWIMDLAVALGYRIVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHHHhcC---CCcccccccCCcHHHHHHHhhhHHHHHHHHHHHHHHhhcccCCCCCC
Confidence            99999999999   99999999999999999999998778889999999999999999875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1.1e-26  Score=173.24  Aligned_cols=263  Identities=18%  Similarity=0.194  Sum_probs=211.5

Q ss_pred             hhhcccccCCchhhhhhhhhhccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhc
Q 037701            4 DLYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKC   83 (358)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~   83 (358)
                      +++.++..|-.+.-..+...- -..++.-|...+-.+.+.++   .++.....   ..++..+...+..|.++++.|+-.
T Consensus        34 ~~~~~~~m~~t~p~~~l~~~~-s~~~~~lge~~~~~~~~s~n---sd~~v~s~---~~~~~~~~~t~p~g~~~~~v~ap~  106 (296)
T KOG0502|consen   34 ELFEQVEMGTTEPRCALTAEI-SALRNALGESLLTVAVRSGN---SDVAVQSA---QLDPDAIDETDPEGWSALLVAAPC  106 (296)
T ss_pred             HHHHHhhccccchhHHHHHHH-HHHHHhcCCcccchhhhcCC---cHHHHHhh---ccCCCCCCCCCchhhhhhhhcCCC
Confidence            344455555555444444432 22367778888889999988   55554443   346777777888899999999999


Q ss_pred             CCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHH
Q 037701           84 RHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHA  163 (358)
Q Consensus        84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  163 (358)
                      ++...+...+.+|+.               .+-.+..+.+|+.+++.+   .+.+....+..  ..+|..|+.|.|||.+
T Consensus       107 ~s~~k~sttltN~~r---------------gnevs~~p~s~~slsVhq---l~L~~~~~~~~--n~VN~~De~GfTpLiW  166 (296)
T KOG0502|consen  107 GSVDKVSTTLTNGAR---------------GNEVSLMPWSPLSLSVHQ---LHLDVVDLLVN--NKVNACDEFGFTPLIW  166 (296)
T ss_pred             CCcceeeeeeccccc---------------CCccccccCChhhHHHHH---HHHHHHHHHhh--ccccCccccCchHhHH
Confidence            999999999998876               334667788999999875   56665555544  3578899999999999


Q ss_pred             HHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHH
Q 037701          164 AVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERV  243 (358)
Q Consensus       164 a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  243 (358)
                      |+..|+.++|++|++.|++ .....+...++|.+|++.|..+++++|+.++.    ++|..|.+|-|||-+|++-|+.++
T Consensus       167 Aaa~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL~r~v----dVNvyDwNGgTpLlyAvrgnhvkc  241 (296)
T KOG0502|consen  167 AAAKGHIPVVQFLLNSGAD-PDALGKYRESALSLATRGGYTDIVELLLTREV----DVNVYDWNGGTPLLYAVRGNHVKC  241 (296)
T ss_pred             HHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCC----CcceeccCCCceeeeeecCChHHH
Confidence            9999999999999999998 56778888999999999999999999999984    488899999999999999999999


Q ss_pred             HHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHH
Q 037701          244 VRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH  303 (358)
Q Consensus       244 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~  303 (358)
                      ++.|+..|++. +..+..|++++..|+..|+. +++..++.-   ++.+.+|..-++|+|
T Consensus       242 ve~Ll~sGAd~-t~e~dsGy~~mdlAValGyr-~Vqqvie~h---~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  242 VESLLNSGADV-TQEDDSGYWIMDLAVALGYR-IVQQVIEKH---ALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHhcCCCc-ccccccCCcHHHHHHHhhhH-HHHHHHHHH---HHHHhhcccCCCCCC
Confidence            99999998885 88999999999999999987 788877766   555666666666654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=4.5e-26  Score=215.28  Aligned_cols=245  Identities=18%  Similarity=0.109  Sum_probs=177.4

Q ss_pred             CCCchhHHHHhcCCcHHHHHHHHH--HHhhhHhhhcchhHHHHHHHhhcccCCcHHH-HHHHHHhCCcHHHHHHHHhcCC
Q 037701           72 KGDTPLHVAAKCRHPAVVEVLIKF--AKKQSRELESGVDWIRWMLLVENEEKNTALH-EAVQSAAKGSVEMVAEILENCP  148 (358)
Q Consensus        72 ~g~t~Lh~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~-~a~~~~~~~~~~~~~~Ll~~~~  148 (358)
                      .+..+++.|+..|+.+.++.+++.  +.+               ++..|..|.|||| .|+.   .++.++++.|++.|.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~---------------in~~d~~G~t~Lh~~A~~---~~~~eiv~lLl~~g~   77 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLN---------------INCPDRLGRSALFVAAIE---NENLELTELLLNLSC   77 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccC---------------CCCcCccchhHHHHHHHh---cChHHHHHHHHhCCC
Confidence            456889999999999999999988  444               4567889999999 6654   488999999998886


Q ss_pred             CCCCCCCCCccHHHHHHhcC---cHHHHHHHHHhCCc---------ccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCc
Q 037701          149 SADHRGPDGLTTLHAAVICN---AEDVIKLLLEKKKI---------LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD  216 (358)
Q Consensus       149 ~~~~~~~~~~t~l~~a~~~~---~~~~v~~Ll~~~~~---------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  216 (358)
                          .+..|.||||.|+..+   ...++..+...+..         ........|.||||+|+..|+.+++++|+++|++
T Consensus        78 ----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd  153 (743)
T TIGR00870        78 ----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS  153 (743)
T ss_pred             ----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Confidence                5667999999998732   22344444433321         0112235689999999999999999999999876


Q ss_pred             cccccc----------ccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcC---------ChhH
Q 037701          217 KIVALY----------KEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL---------RGGV  277 (358)
Q Consensus       217 ~~~~~~----------~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~---------~~~~  277 (358)
                      ......          .....|.+|||.|+..|+.+++++|++++++ ++..|..|+||||+|+..+         ...+
T Consensus       154 v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~  232 (743)
T TIGR00870       154 VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQM  232 (743)
T ss_pred             CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence            332110          1113588999999999999999999998765 5888999999999999886         2234


Q ss_pred             HHHHhcCccccccc----cCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhh
Q 037701          278 LKSLLENPYVISLI----HGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRY  339 (358)
Q Consensus       278 ~~~Ll~~~~~~~~~----~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~  339 (358)
                      .+++++.+....+.    +..|..|.||||+|+..++..+ ++|++.+............|.+.+..
T Consensus       233 ~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       233 YNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhhh
Confidence            55566555332333    5678899999999999998888 88887655544445555666555543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=3.1e-26  Score=216.35  Aligned_cols=222  Identities=22%  Similarity=0.171  Sum_probs=176.8

Q ss_pred             ccCCcHHHHHHHHHhCCcHHHHHHHHhc--CCCCCCCCCCCccHHH-HHHhcCcHHHHHHHHHhCCcccccccCCCCCHH
Q 037701          119 EEKNTALHEAVQSAAKGSVEMVAEILEN--CPSADHRGPDGLTTLH-AAVICNAEDVIKLLLEKKKILTRERDRHGWTSL  195 (358)
Q Consensus       119 ~~~~t~l~~a~~~~~~~~~~~~~~Ll~~--~~~~~~~~~~~~t~l~-~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  195 (358)
                      ..+...++.|++.   |+.+.++.+++.  +.++|..|..|.|||| .|+..++.++++.|++.+.     .+..|.|||
T Consensus        15 ~~~~~~~l~A~~~---g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~L   86 (743)
T TIGR00870        15 SDEEKAFLPAAER---GDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLL   86 (743)
T ss_pred             CHHHHHHHHHHHc---CCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHH
Confidence            3456888999765   999999999999  8899999999999999 8889999999999998876     577899999


Q ss_pred             HHHHHcC---CHHHHHHHhcCCCccc------ccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCccccc-------
Q 037701          196 HHAAYLG---HSNITSMMLKSEDDKI------VALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVD-------  259 (358)
Q Consensus       196 ~~a~~~~---~~~~~~~Ll~~~~~~~------~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-------  259 (358)
                      |.|+..+   ...++..+...+.+..      .........|.||||+|+..|+.+++++|++.|++. +.++       
T Consensus        87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~  165 (743)
T TIGR00870        87 HAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVK  165 (743)
T ss_pred             HHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhc
Confidence            9998732   2234444444332100      001122356999999999999999999999998764 4332       


Q ss_pred             -------CCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCC---------Cc-eeecCCcch
Q 037701          260 -------NRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRD---------SS-YFIVPDSDM  322 (358)
Q Consensus       260 -------~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~---------~~-~~Ll~~g~~  322 (358)
                             ..|.||||.|+..++.++++.|+++|   ++++.+|..|+||||+|+..+..         .+ ++++..++.
T Consensus       166 ~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g---adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       166 SQGVDSFYHGESPLNAAACLGSPSIVALLSEDP---ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK  242 (743)
T ss_pred             CCCCCcccccccHHHHHHHhCCHHHHHHHhcCC---cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence                   35899999999999999999999999   89999999999999999988621         22 445544443


Q ss_pred             ---H----HHHhhCCCchhhHhhhCCCCcccccceeee
Q 037701          323 ---Y----EAVNKQNTSVEHIVRYGYPELEVIPSLLII  353 (358)
Q Consensus       323 ---~----~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  353 (358)
                         .    +..|.+|.||+++|+.. ++.++++.|+.+
T Consensus       243 ~~~~~el~~i~N~~g~TPL~~A~~~-g~~~l~~lLL~~  279 (743)
T TIGR00870       243 LRDSKELEVILNHQGLTPLKLAAKE-GRIVLFRLKLAI  279 (743)
T ss_pred             cCChHhhhhhcCCCCCCchhhhhhc-CCccHHHHHHHH
Confidence               3    78899999999999985 999999999874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.1e-24  Score=206.88  Aligned_cols=178  Identities=19%  Similarity=0.210  Sum_probs=160.0

Q ss_pred             cccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037701          118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHH  197 (358)
Q Consensus       118 ~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  197 (358)
                      +..+.++|+.|+..   ++.++++.|++.|+++|..|..|.||||+|+..|+.+++++|+++|++ .+.+|..|.||||+
T Consensus       522 ~~~~~~~L~~Aa~~---g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~  597 (823)
T PLN03192        522 DPNMASNLLTVAST---GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWN  597 (823)
T ss_pred             CccchhHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHH
Confidence            44567899999655   999999999999999999999999999999999999999999999887 67889999999999


Q ss_pred             HHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhH
Q 037701          198 AAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGV  277 (358)
Q Consensus       198 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  277 (358)
                      |+..|+.+++++|++.+..    .  ....+.++||.|+..|+.++++.|++++++ ++.+|..|.||||+|+..|+.++
T Consensus       598 A~~~g~~~iv~~L~~~~~~----~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~i  670 (823)
T PLN03192        598 AISAKHHKIFRILYHFASI----S--DPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDM  670 (823)
T ss_pred             HHHhCCHHHHHHHHhcCcc----c--CcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHH
Confidence            9999999999999987643    1  234577999999999999999999999887 58899999999999999999999


Q ss_pred             HHHHhcCccccccccCCCCCC-ChHHHHHHHhC
Q 037701          278 LKSLLENPYVISLIHGRDKNG-NTPLHVLAAAC  309 (358)
Q Consensus       278 ~~~Ll~~~~~~~~~~~~~~~g-~tpL~~a~~~~  309 (358)
                      +++|+++|   ++++.++..| .||+.++....
T Consensus       671 v~~Ll~~G---Adv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        671 VRLLIMNG---ADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHHcC---CCCCCCCCCCCCCHHHHHHHHH
Confidence            99999999   8999999988 89998887644

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=4.9e-25  Score=209.30  Aligned_cols=190  Identities=20%  Similarity=0.178  Sum_probs=166.0

Q ss_pred             cHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCC
Q 037701          136 SVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED  215 (358)
Q Consensus       136 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  215 (358)
                      ..++-..+.+.+..  ..+..+.++|+.|+..|+.++++.|++.|.+ .+..|..|.||||+|+..|+.+++++|++.|+
T Consensus       506 ~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        506 DLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             cccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            33444444444432  2344567899999999999999999999988 67889999999999999999999999999985


Q ss_pred             cccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCC
Q 037701          216 DKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRD  295 (358)
Q Consensus       216 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  295 (358)
                      +    ++.+|..|.||||.|+..|+.+++++|++.++..   ....|.++||.|+..|+.++++.|+++|   +++|.+|
T Consensus       583 d----in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G---adin~~d  652 (823)
T PLN03192        583 N----VHIRDANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQG---LNVDSED  652 (823)
T ss_pred             C----CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCC---CCCCCCC
Confidence            4    7888999999999999999999999999876543   2356789999999999999999999999   8999999


Q ss_pred             CCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCC-CchhhHhh
Q 037701          296 KNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQN-TSVEHIVR  338 (358)
Q Consensus       296 ~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g-~t~l~~a~  338 (358)
                      ..|+||||+|+..++..+ ++|+++|+|++..|..| .||.+++.
T Consensus       653 ~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        653 HQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRE  697 (823)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999 99999999999999998 99998873

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=4.4e-26  Score=205.37  Aligned_cols=294  Identities=21%  Similarity=0.167  Sum_probs=257.5

Q ss_pred             eccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchh
Q 037701           29 ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVD  108 (358)
Q Consensus        29 ~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  108 (358)
                      ....-.|+|..||..|+   .+.++.++.    .++.+..+|..|.+||.+|+-.|+..+|+.|+.+.++...       
T Consensus       753 Te~n~~t~LT~acaggh---~e~vellv~----rganiehrdkkgf~plImaatagh~tvV~~llk~ha~vea-------  818 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGH---REEVELLVV----RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEA-------  818 (2131)
T ss_pred             cCccccccccccccCcc---HHHHHHHHH----hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhh-------
Confidence            34567799999999999   888888877    5888999999999999999999999999999999888543       


Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCccccc-c
Q 037701          109 WIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRE-R  187 (358)
Q Consensus       109 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~-~  187 (358)
                             -.|..+.|+|.+||.   .+..+++..|+..|++-..++-.-+|||.+|...|..++|..|+..|..+... -
T Consensus       819 -------Qsdrtkdt~lSlacs---ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtg  888 (2131)
T KOG4369|consen  819 -------QSDRTKDTMLSLACS---GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTG  888 (2131)
T ss_pred             -------hcccccCceEEEecC---CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccc
Confidence                   367789999999965   49999999999999988888888899999999999999999999999875433 3


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHH
Q 037701          188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARH  267 (358)
Q Consensus       188 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  267 (358)
                      .+-|..||.+|...|+....+.|++.|.|....   ...+.+|+|.+|+..|..++|..||...+. +..+-..|.|||.
T Consensus       889 SklgisPLmlatmngh~~at~~ll~~gsdiNaq---IeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplm  964 (2131)
T KOG4369|consen  889 SKLGISPLMLATMNGHQAATLSLLQPGSDINAQ---IETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLM  964 (2131)
T ss_pred             cccCcchhhhhhhccccHHHHHHhcccchhccc---cccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccc
Confidence            467889999999999999999999999763332   245678999999999999999999998665 4778889999999


Q ss_pred             HHHHcCChhHHHHHhcCccccccccCC--CCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCc
Q 037701          268 FAMVSLRGGVLKSLLENPYVISLIHGR--DKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPEL  344 (358)
Q Consensus       268 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~--~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  344 (358)
                      .++..|..++-+.|+..|   +|.|+.  -....|+|-+++..|+... ..|+...|.+.++|++|.|+|.+|+.+ +.+
T Consensus       965 e~AsgGyvdvg~~li~~g---ad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~G-g~l 1040 (2131)
T KOG4369|consen  965 EMASGGYVDVGNLLIAAG---ADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAG-GAL 1040 (2131)
T ss_pred             hhhcCCccccchhhhhcc---cccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccC-Ccc
Confidence            999999999999999999   776654  4567899999999999988 999999999999999999999999997 888


Q ss_pred             ccccceeeee
Q 037701          345 EVIPSLLIIN  354 (358)
Q Consensus       345 ~~~~~L~~~~  354 (358)
                      -.+..|++.+
T Consensus      1041 ss~~il~~~~ 1050 (2131)
T KOG4369|consen 1041 SSCPILVSSV 1050 (2131)
T ss_pred             ccchHHhhcc
Confidence            8888887653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-23  Score=168.86  Aligned_cols=187  Identities=22%  Similarity=0.319  Sum_probs=159.7

Q ss_pred             CcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcC-CCCCCCCCCCccHHHH
Q 037701           85 HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC-PSADHRGPDGLTTLHA  163 (358)
Q Consensus        85 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~  163 (358)
                      +++.|+-.+.....      .+...++|+++..|.+|+|+|||++.+   .++++++.|++.| ++++.++.-|+||+++
T Consensus       238 ~pe~V~~~l~~f~a------ls~~lL~yvVNlaDsNGNTALHYsVSH---aNF~VV~~LLDSgvC~VD~qNrAGYtpiML  308 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEA------LSPPLLEYVVNLADSNGNTALHYAVSH---ANFDVVSILLDSGVCDVDQQNRAGYTPVML  308 (452)
T ss_pred             CHHHHHHHHHHHHh------cChHHHHHHhhhhcCCCCeeeeeeecc---cchHHHHHHhccCcccccccccccccHHHH
Confidence            45666555443322      234567888999999999999999887   9999999999988 7899999999999998


Q ss_pred             HHhc-----CcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc
Q 037701          164 AVIC-----NAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ  238 (358)
Q Consensus       164 a~~~-----~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~  238 (358)
                      ++..     ...++|..|...|.. +......|+|+|++|+.+|+.++++.|+.+|++    +|.+|.+|.|+|+.|+..
T Consensus       309 aALA~lk~~~d~~vV~~LF~mgnV-NaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd----VNiQDdDGSTALMCA~EH  383 (452)
T KOG0514|consen  309 AALAKLKQPADRTVVERLFKMGDV-NAKASQHGQTALMLAVSHGRVDMVKALLACGAD----VNIQDDDGSTALMCAAEH  383 (452)
T ss_pred             HHHHhhcchhhHHHHHHHHhccCc-chhhhhhcchhhhhhhhcCcHHHHHHHHHccCC----CccccCCccHHHhhhhhh
Confidence            8753     457788999877765 555678899999999999999999999999965    888999999999999999


Q ss_pred             CcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          239 GYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       239 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      |+.+++++|+.....++..+|.+|-|+|.+|...|+.+|.-.|..+.
T Consensus       384 GhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  384 GHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             ChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            99999999999988888899999999999999999999988887654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=2.5e-24  Score=187.73  Aligned_cols=249  Identities=22%  Similarity=0.171  Sum_probs=208.9

Q ss_pred             hhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCC
Q 037701           76 PLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGP  155 (358)
Q Consensus        76 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~  155 (358)
                      =+.-||+.|+.+.+..||+............  .-..-++..|.+|.|.||.|+.+   ++.++++.|++..+-++..+.
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~--trsds~n~qd~~gfTalhha~Ln---g~~~is~llle~ea~ldl~d~   80 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFT--TRSDSHNLQDYSGFTLLHHAVLN---GQNQISKLLLDYEALLDLCDT   80 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCC--CCCccccccCccchhHHHHHHhc---CchHHHHHHhcchhhhhhhhc
Confidence            3567889999999999997532211100000  00001557888999999999876   999999999999988888898


Q ss_pred             CCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHH
Q 037701          156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA  235 (358)
Q Consensus       156 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a  235 (358)
                      .|.+|||+|+..|+.++++.++.++.. .+.....|.||||.|+..|+.+++.+|+.++++    .-..+..+.|++..|
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad----p~i~nns~~t~ldlA  155 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD----PFIRNNSKETVLDLA  155 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCC----ccccCcccccHHHHH
Confidence            999999999999999999999998844 788899999999999999999999999999976    445688899999999


Q ss_pred             HHcCcHHHHHHHHhhCCCCc--------ccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHH
Q 037701          236 ASQGYERVVRRIIRHCPESY--------SIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA  307 (358)
Q Consensus       236 ~~~~~~~~v~~Ll~~~~~~~--------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~  307 (358)
                      ++.|..++++.|++.. -+.        ..++-.+-+|+|.|+.+|+.++++.|++.|   .++|..... -|+||.|+.
T Consensus       156 ~qfgr~~Vvq~ll~~~-~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag---~din~~t~~-gtalheaal  230 (854)
T KOG0507|consen  156 SRFGRAEVVQMLLQKK-FPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAG---FDINYTTED-GTALHEAAL  230 (854)
T ss_pred             HHhhhhHHHHHHhhhc-cchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcC---CCccccccc-chhhhhHhh
Confidence            9999999999999862 111        234556788999999999999999999999   777776666 599999999


Q ss_pred             hCCCCc-eeecCCcchHHHHhhCCCchhhHhhh
Q 037701          308 ACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRY  339 (358)
Q Consensus       308 ~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~  339 (358)
                      +|...+ .+|++-|.+...+|.+|.|+|++...
T Consensus       231 cgk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  231 CGKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             cCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence            999988 99999999999999999999998865

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=7e-24  Score=178.47  Aligned_cols=198  Identities=27%  Similarity=0.346  Sum_probs=167.9

Q ss_pred             hCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhc
Q 037701          133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLK  212 (358)
Q Consensus       133 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  212 (358)
                      ..+..+-+..|+..|++++..+.+|.|++|-+|...+.++|++|++.|+. ++..+..++||+|.|+.+|+..++++|++
T Consensus        49 ~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~~~i~~~li~  127 (527)
T KOG0505|consen   49 SRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASCGYLNIVEYLIQ  127 (527)
T ss_pred             ccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcchhhcccccHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999 67889999999999999999999999999


Q ss_pred             CCCcccccccccCCCCCCHHHHHHH-------------cC-c------------HHHHHHHHhhCCCCcccccCCCCcHH
Q 037701          213 SEDDKIVALYKEDDRGMTALHLAAS-------------QG-Y------------ERVVRRIIRHCPESYSIVDNRGWNAR  266 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~g~t~l~~a~~-------------~~-~------------~~~v~~Ll~~~~~~~~~~~~~g~t~l  266 (358)
                      .|++    +...+..|..|+..+-.             .| .            ..=+...+..|.. ..+++..|.|.|
T Consensus       128 ~gA~----~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~-~d~~~~rG~T~l  202 (527)
T KOG0505|consen  128 HGAN----LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE-LDARHARGATAL  202 (527)
T ss_pred             hhhh----hhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc-ccccccccchHH
Confidence            9965    44456666666554311             11 0            0111222333333 466777799999


Q ss_pred             HHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhh
Q 037701          267 HFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRY  339 (358)
Q Consensus       267 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~  339 (358)
                      |.|+.+|..++..+|++.|   .+++.+|..|+||||.|+-++...+ ++|+++|++++..+..|.||++++..
T Consensus       203 HvAaa~Gy~e~~~lLl~ag---~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  203 HVAAANGYTEVAALLLQAG---YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHhhhHHHHHHHHHHhc---cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            9999999999999999999   8889999999999999999999988 99999999999999999999999854

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=6.2e-23  Score=164.48  Aligned_cols=167  Identities=23%  Similarity=0.266  Sum_probs=146.6

Q ss_pred             hhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHH--hCCcHHHHHHH
Q 037701           66 LLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA--AKGSVEMVAEI  143 (358)
Q Consensus        66 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~~~~L  143 (358)
                      +|..|.+|+|+||||+..+|+++|+.||+.|-..              ++.++..|+||++.++...  ...+.+++..|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~--------------VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~L  326 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCD--------------VDQQNRAGYTPVMLAALAKLKQPADRTVVERL  326 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCccc--------------ccccccccccHHHHHHHHhhcchhhHHHHHHH
Confidence            6778999999999999999999999999987553              5578999999999987642  34467788888


Q ss_pred             HhcCCCCCCCCC-CCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccc
Q 037701          144 LENCPSADHRGP-DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY  222 (358)
Q Consensus       144 l~~~~~~~~~~~-~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  222 (358)
                      .+-| ++|.+-+ .|.|+|++|+.+|+.++|+.|+..|++ ++.+|.+|.|+|++||.+|+.+++++|+....   ++..
T Consensus       327 F~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~---cd~s  401 (452)
T KOG0514|consen  327 FKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS---CDIS  401 (452)
T ss_pred             Hhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCc---ccce
Confidence            8876 6777654 599999999999999999999999999 78999999999999999999999999998654   7788


Q ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHhhC
Q 037701          223 KEDDRGMTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       223 ~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      .+|.+|.|+|.+|...|+.++.-+|..+.
T Consensus       402 LtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  402 LTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             eecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            89999999999999999999988887663

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.2e-22  Score=171.02  Aligned_cols=207  Identities=23%  Similarity=0.318  Sum_probs=148.5

Q ss_pred             hhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHh
Q 037701            4 DLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAK   82 (358)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~   82 (358)
                      .+..|+..|+.+.++.||..+ +.+..+.+|.|+||.||...+   .++++++.+    .++.++..|..|+||||.|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~---~e~v~~l~e----~ga~Vn~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDN---LEMVKFLVE----NGANVNAQDNEGWTPLHAAAS  115 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhccc---HHHHHHHHH----hcCCccccccccCCcchhhcc
Confidence            467899999999999999997 567799999999999999999   999999988    588999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHH-----------------------HhCCcHHH
Q 037701           83 CRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS-----------------------AAKGSVEM  139 (358)
Q Consensus        83 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~-----------------------~~~~~~~~  139 (358)
                      .|+..++++|+++|++...               .+.+|..|.-.+...                       .......-
T Consensus       116 cg~~~i~~~li~~gA~~~a---------------vNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D  180 (527)
T KOG0505|consen  116 CGYLNIVEYLIQHGANLLA---------------VNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDD  180 (527)
T ss_pred             cccHHHHHHHHHhhhhhhh---------------ccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHH
Confidence            9999999999999999543               333333333333111                       00011112


Q ss_pred             HHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccc
Q 037701          140 VAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIV  219 (358)
Q Consensus       140 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  219 (358)
                      +...+..|...+..+..|.|.+|.|...|..++..+|++.|.. .+.+|.+|+||||.|+..|..++.+.|++++++   
T Consensus       181 ~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~---  256 (527)
T KOG0505|consen  181 ARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD---  256 (527)
T ss_pred             HHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHHhhcc---
Confidence            2223335555666555566777777777777777777766666 456667777777777777777777766666643   


Q ss_pred             cccccCCCCCCHHHHHHH
Q 037701          220 ALYKEDDRGMTALHLAAS  237 (358)
Q Consensus       220 ~~~~~~~~g~t~l~~a~~  237 (358)
                       ++.....|.+|+.+|..
T Consensus       257 -~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  257 -MDAKTKMGETPLDVADE  273 (527)
T ss_pred             -cchhhhcCCCCccchhh
Confidence             55556666666666543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1e-21  Score=150.27  Aligned_cols=145  Identities=18%  Similarity=0.184  Sum_probs=105.9

Q ss_pred             cCCCCCCCCCCCccHHHHHHhcCcH----HHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHH---HHHHhcCCCccc
Q 037701          146 NCPSADHRGPDGLTTLHAAVICNAE----DVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNI---TSMMLKSEDDKI  218 (358)
Q Consensus       146 ~~~~~~~~~~~~~t~l~~a~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~Ll~~~~~~~  218 (358)
                      ++++++..+.++.+++|.|++.|+.    +++++|.+.+.. .+.++..|.||||+|+..|+.+.   +++|++.|++  
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad--   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD--   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC--
Confidence            3455666667777888888888876    455566666655 45667788888888888776543   6788887744  


Q ss_pred             ccccccC-CCCCCHHHHHHHcCcHHHHHHHHh-hCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCC
Q 037701          219 VALYKED-DRGMTALHLAASQGYERVVRRIIR-HCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDK  296 (358)
Q Consensus       219 ~~~~~~~-~~g~t~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  296 (358)
                        ++.++ ..|.||||+|+..++.+++++|++ .+.+ ++.++..|.||||+|+..++.+++++|+++|   ++++.++.
T Consensus        86 --in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g---a~~~~~~~  159 (166)
T PHA02743         86 --INARELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANG---AVCDDPLS  159 (166)
T ss_pred             --CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCccc
Confidence              56666 478888888888888888888885 4443 5677888888888888888888888888887   77777776


Q ss_pred             CCC
Q 037701          297 NGN  299 (358)
Q Consensus       297 ~g~  299 (358)
                      .|.
T Consensus       160 ~~~  162 (166)
T PHA02743        160 IGL  162 (166)
T ss_pred             CCc
Confidence            654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=4.2e-21  Score=146.91  Aligned_cols=146  Identities=10%  Similarity=0.029  Sum_probs=102.4

Q ss_pred             ccchhcccCCCCchhHHHHhcCCc----HHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHH
Q 037701           63 PSLLLQVNDKGDTPLHVAAKCRHP----AVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVE  138 (358)
Q Consensus        63 ~~~~~~~~~~g~t~Lh~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  138 (358)
                      +.+++..+..+.++||.||+.|+.    +++++|++.|+.               ++..|..|.||||+|+........+
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~---------------~~~~d~~g~t~Lh~Aa~~g~~~~~~   74 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL---------------LHRYDHHGRQCTHMVAWYDRANAVM   74 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh---------------hhccCCCCCcHHHHHHHhCccCHHH
Confidence            344555667778888888888887    555566666655               4456778888888887651112234


Q ss_pred             HHHHHHhcCCCCCCCC-CCCccHHHHHHhcCcHHHHHHHHH-hCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCc
Q 037701          139 MVAEILENCPSADHRG-PDGLTTLHAAVICNAEDVIKLLLE-KKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD  216 (358)
Q Consensus       139 ~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  216 (358)
                      ++++|++.|++++.++ ..|.||||+|+..++.+++++|+. .+.+ .+.++..|.||||+|+..++.+++++|++.+++
T Consensus        75 ~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         75 KIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAV  153 (166)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4778888888888877 468888888888888888888875 4555 556777888888888888888888888877744


Q ss_pred             ccccccccCCCC
Q 037701          217 KIVALYKEDDRG  228 (358)
Q Consensus       217 ~~~~~~~~~~~g  228 (358)
                          ++.++..|
T Consensus       154 ----~~~~~~~~  161 (166)
T PHA02743        154 ----CDDPLSIG  161 (166)
T ss_pred             ----CCCcccCC
Confidence                44444444

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=2e-21  Score=149.49  Aligned_cols=131  Identities=16%  Similarity=0.206  Sum_probs=100.8

Q ss_pred             hhcccCCCCchhHHHHhcCCcHHHHHHHHH------HHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCc---
Q 037701           66 LLQVNDKGDTPLHVAAKCRHPAVVEVLIKF------AKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGS---  136 (358)
Q Consensus        66 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---  136 (358)
                      ++.++..|.||||+|+..|+.++++.|+..      |++               ++.+|..|.||||+|+..   ++   
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~---------------in~~d~~g~T~Lh~A~~~---g~~~~   75 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA---------------LNATDDAGQMCIHIAAEK---HEAQL   75 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh---------------hhccCCCCCcHHHHHHHc---CChHH
Confidence            445677788888888888888888887543      344               456778888888888875   55   


Q ss_pred             -HHHHHHHHhcCCCCCCCCC-CCccHHHHHHhcCcHHHHHHHHHh-CCcccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 037701          137 -VEMVAEILENCPSADHRGP-DGLTTLHAAVICNAEDVIKLLLEK-KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKS  213 (358)
Q Consensus       137 -~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  213 (358)
                       .+++++|++.|++++.++. .|.||||+|+..++.+++++|+.. +.+ .+..+..|.|||++|+..++.+++++|++.
T Consensus        76 ~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         76 AAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             HHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence             4788888888888888774 788888888888888888888874 554 567788888888888888888888888876


Q ss_pred             CC
Q 037701          214 ED  215 (358)
Q Consensus       214 ~~  215 (358)
                      +.
T Consensus       155 ~~  156 (169)
T PHA02741        155 VA  156 (169)
T ss_pred             HH
Confidence            53

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=7.8e-21  Score=146.24  Aligned_cols=129  Identities=16%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             hcccCCcHHHHHHHHHhCCcHHHHHHHH---hcCCCCCCCCCCCccHHHHHHhcCc----HHHHHHHHHhCCccccccc-
Q 037701          117 ENEEKNTALHEAVQSAAKGSVEMVAEIL---ENCPSADHRGPDGLTTLHAAVICNA----EDVIKLLLEKKKILTRERD-  188 (358)
Q Consensus       117 ~~~~~~t~l~~a~~~~~~~~~~~~~~Ll---~~~~~~~~~~~~~~t~l~~a~~~~~----~~~v~~Ll~~~~~~~~~~~-  188 (358)
                      ++..|.||||+|++.....-.+.+..++   ..|++++.++..|.||||+|+..++    .+++++|++.|++ .+.++ 
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~~~   95 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQEM   95 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCCCc
Confidence            3444445555554432223333332222   2334444444444555555544444    2444444444444 22333 


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHhcC-CCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          189 RHGWTSLHHAAYLGHSNITSMMLKS-EDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       189 ~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      ..|.||||+|+..++.+++++|+.. +    ++++..+..|.||||.|+..++.+++++|++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g----~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPG----IDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            2445555555555555555544432 3    22334444445555555555544555444444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.6e-20  Score=154.54  Aligned_cols=160  Identities=11%  Similarity=0.112  Sum_probs=126.6

Q ss_pred             hhcccCCCCch-hHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHH
Q 037701           66 LLQVNDKGDTP-LHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEIL  144 (358)
Q Consensus        66 ~~~~~~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll  144 (358)
                      +..+|..|.|+ ||.|+..|+.+++++|+++|++++...           ...+..|.||||+|+..   ++.+++++|+
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~-----------~~sd~~g~TpLh~Aa~~---~~~eivklLL   90 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPF-----------PLSENSKTNPLIYAIDC---DNDDAAKLLI   90 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccC-----------cccCCCCCCHHHHHHHc---CCHHHHHHHH
Confidence            44567777765 666677789999999999999843210           00245899999999765   9999999999


Q ss_pred             hcCCCCCCC-CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccc
Q 037701          145 ENCPSADHR-GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYK  223 (358)
Q Consensus       145 ~~~~~~~~~-~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  223 (358)
                      ++|++++.+ +..|.||||.|+..++.+++++|+..|++ .+.++..|.||||+|+..++.+++..+...+         
T Consensus        91 ~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~~---------  160 (300)
T PHA02884         91 RYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDNE---------  160 (300)
T ss_pred             HcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCCc---------
Confidence            999999986 45799999999999999999999999988 5678899999999999988888776665432         


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhhCC
Q 037701          224 EDDRGMTALHLAASQGYERVVRRIIRHCP  252 (358)
Q Consensus       224 ~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~  252 (358)
                      .+..+.+|.+.+   ++.++++.|+++..
T Consensus       161 ~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        161 ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            355667888765   46888898888754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=5e-21  Score=137.69  Aligned_cols=140  Identities=21%  Similarity=0.184  Sum_probs=118.8

Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcC
Q 037701          194 SLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL  273 (358)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  273 (358)
                      .+-+|+..+....|+.|++..++   .+|.+|.+|.||||.|+++|+.++++.|+..+++. +.+...|+||||-||.-+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an---~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKAN---HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccc---cccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhccc
Confidence            45678888888888888876552   47788889999999999999999999999888775 778888999999999999


Q ss_pred             ChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc---eeecCCcchHHHHhhCCCchhhHhhhC
Q 037701          274 RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS---YFIVPDSDMYEAVNKQNTSVEHIVRYG  340 (358)
Q Consensus       274 ~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~---~~Ll~~g~~~~~~~~~g~t~l~~a~~~  340 (358)
                      +.+++-+|+++|   +|+|+......||||+|+...+...   .+|...++++..++..+.||+++|.+.
T Consensus       142 N~~va~~LLqhg---aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  142 NFEVAGRLLQHG---ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             chhHHHHHHhcc---CcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            999999999999   8999998888999999998876655   566678899999999999999999663

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=142.54  Aligned_cols=137  Identities=15%  Similarity=0.107  Sum_probs=107.4

Q ss_pred             hhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcH---HHHHH
Q 037701           66 LLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSV---EMVAE  142 (358)
Q Consensus        66 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~---~~~~~  142 (358)
                      .+.+|..|.||||+|+..|+  ++.++...+.....        .+.++...+..|.||||+|+..   +..   ++++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~--------~~~~~~~~d~~g~t~Lh~a~~~---~~~~~~e~v~~   76 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDE--------NRYLVLEYNRHGKQCVHIVSNP---DKADPQEKLKL   76 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcch--------hHHHHHHhcCCCCEEEEeeccc---CchhHHHHHHH
Confidence            45578889999999999998  44444443322110        1122446788999999999765   554   57889


Q ss_pred             HHhcCCCCCCCC-CCCccHHHHHHhcCcHHHHHHHHHh-CCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCc
Q 037701          143 ILENCPSADHRG-PDGLTTLHAAVICNAEDVIKLLLEK-KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD  216 (358)
Q Consensus       143 Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  216 (358)
                      |++.|++++.++ ..|.||||+|+..++.+++++|+.+ +.+ .+.++..|.||||+|+..++.+++++|+..|++
T Consensus        77 Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999987 4899999999999999999999975 555 677889999999999999999999999988864

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=6.7e-20  Score=150.81  Aligned_cols=158  Identities=15%  Similarity=0.113  Sum_probs=130.9

Q ss_pred             HHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCC----CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccC
Q 037701          114 LLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRG----PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR  189 (358)
Q Consensus       114 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~----~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~  189 (358)
                      +..+|..+.|++++++  +..++.++++.|+++|++++.++    ..|.||||+|+..++.+++++|+++|++.....+.
T Consensus        25 ~~~~d~~~~~~lL~~A--~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSS--IKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHH--HHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC
Confidence            3467888877755544  23489999999999999999874    57999999999999999999999999984433456


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHH
Q 037701          190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFA  269 (358)
Q Consensus       190 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  269 (358)
                      .|.||||.|+..++.+++++|++.|++    ++.++..|.||+|.|+..++.+++..+...      ..+..+.+|++++
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAd----in~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGAD----INIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh
Confidence            899999999999999999999999955    777899999999999999888887666532      1456677888875


Q ss_pred             HHcCChhHHHHHhcCcc
Q 037701          270 MVSLRGGVLKSLLENPY  286 (358)
Q Consensus       270 ~~~~~~~~~~~Ll~~~~  286 (358)
                         ++.++++.|++++.
T Consensus       173 ---~n~ei~~~Lish~v  186 (300)
T PHA02884        173 ---INFDILKILVSHFI  186 (300)
T ss_pred             ---ccHHHHHHHHHHHH
Confidence               46899999999885

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=1.6e-20  Score=142.62  Aligned_cols=136  Identities=15%  Similarity=0.115  Sum_probs=109.9

Q ss_pred             cceeccCCCceehhhhccccccccchHHHHHHH-HhhCccchhcccCCCCchhHHHHhcCCc---HHHHHHHHHHHhhhH
Q 037701           26 VSIATHEKNTVLHVNIASQQEGERVSTEFVEGI-LEMCPSLLLQVNDKGDTPLHVAAKCRHP---AVVEVLIKFAKKQSR  101 (358)
Q Consensus        26 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~g~t~Lh~A~~~~~~---~~v~~Ll~~~~~~~~  101 (358)
                      .+..+..|.||||+|+..|+   ...+...... ....+..+..+|..|.||||+|+..++.   +++++|++.|++   
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~---~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad---   83 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGG---VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD---   83 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCC---HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC---
Confidence            34478899999999999998   3221111111 1122334567789999999999999986   578999999988   


Q ss_pred             hhhcchhHHHHHHHhhc-ccCCcHHHHHHHHHhCCcHHHHHHHHh-cCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHh
Q 037701          102 ELESGVDWIRWMLLVEN-EEKNTALHEAVQSAAKGSVEMVAEILE-NCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK  179 (358)
Q Consensus       102 ~~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~  179 (358)
                                  ++.++ ..|.||||+|+..   ++.+++++|+. .|++++.++..|.||||+|+..++.+++++|+..
T Consensus        84 ------------in~~~~~~g~T~Lh~A~~~---~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         84 ------------INGKERVFGNTPLHIAVYT---QNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             ------------ccccCCCCCCcHHHHHHHh---CCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                        44566 5899999999776   99999999997 5899999999999999999999999999999998


Q ss_pred             CCc
Q 037701          180 KKI  182 (358)
Q Consensus       180 ~~~  182 (358)
                      |+.
T Consensus       149 ga~  151 (154)
T PHA02736        149 GAQ  151 (154)
T ss_pred             CCC
Confidence            876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=1.4e-19  Score=130.37  Aligned_cols=140  Identities=23%  Similarity=0.249  Sum_probs=67.9

Q ss_pred             HHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCC
Q 037701           78 HVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDG  157 (358)
Q Consensus        78 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~  157 (358)
                      -.|+..+..+.|+.||+..++.              ++.+|.+|+||||.|+.+   ++.++++.|+..|++++.+...|
T Consensus        68 lwaae~nrl~eV~~lL~e~an~--------------vNtrD~D~YTpLHRAaYn---~h~div~~ll~~gAn~~a~T~~G  130 (228)
T KOG0512|consen   68 LWAAEKNRLTEVQRLLSEKANH--------------VNTRDEDEYTPLHRAAYN---GHLDIVHELLLSGANKEAKTNEG  130 (228)
T ss_pred             HHHHhhccHHHHHHHHHhcccc--------------ccccccccccHHHHHHhc---CchHHHHHHHHccCCcccccccC
Confidence            3444555555555555544432              344555555555555333   55555555555555555555555


Q ss_pred             ccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCH-HHHHHHhcCCCcccccccccCCCCCCHHHHHH
Q 037701          158 LTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHS-NITSMMLKSEDDKIVALYKEDDRGMTALHLAA  236 (358)
Q Consensus       158 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~  236 (358)
                      +||||.||+=++.+++.+|+++|++ ++......+||||.|+...+. ..+.+|+....   +....++..+.||+.+|-
T Consensus       131 WTPLhSAckWnN~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry---i~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  131 WTPLHSACKWNNFEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY---IHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             ccchhhhhcccchhHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccc---cChhhhcCccchHHHHHH
Confidence            5555555555555555555555555 344444455555555544433 23333332211   233334444555555554


Q ss_pred             Hc
Q 037701          237 SQ  238 (358)
Q Consensus       237 ~~  238 (358)
                      +.
T Consensus       207 RT  208 (228)
T KOG0512|consen  207 RT  208 (228)
T ss_pred             Hh
Confidence            44

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=2.9e-20  Score=144.90  Aligned_cols=113  Identities=20%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCCh
Q 037701          221 LYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNT  300 (358)
Q Consensus       221 ~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t  300 (358)
                      .|.-|..|++|||+|++.|+..+++.|+..|+. +|.++....||||+|+.+|+.++++.|+++.   +|+|+.+..|+|
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~k---advnavnehgnt  102 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRK---ADVNAVNEHGNT  102 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHh---cccchhhccCCC
Confidence            444455555555555555555555555555544 3445555555555555555555555555555   555555555555


Q ss_pred             HHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHh
Q 037701          301 PLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIV  337 (358)
Q Consensus       301 pL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a  337 (358)
                      ||||||..|...+ +-|+..||-+++-|++|.||++-|
T Consensus       103 plhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            5555555555555 555555555555555555555544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=6e-19  Score=156.25  Aligned_cols=205  Identities=20%  Similarity=0.217  Sum_probs=159.6

Q ss_pred             hhhhcccccCCchhhhhhhhhh----------ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhc----
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE----------LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ----   68 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~----------~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~----   68 (358)
                      .++..|...|.++.+..++...          .++.+...|+|.||.|..+......++++.|++.   .+..++.    
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~---~p~lind~~~~  179 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEI---FPKLINDIYTS  179 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHH---hHHHhhhhhhh
Confidence            4677888889999888887764          2444677899999999997663334555555554   4444443    


Q ss_pred             ccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchh------HHHHH--HHhhcccCCcHHHHHHHHHhCCcHHHH
Q 037701           69 VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVD------WIRWM--LLVENEEKNTALHEAVQSAAKGSVEMV  140 (358)
Q Consensus        69 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~~  140 (358)
                      ....|.||||+|+.+.+.++|++|++.||+.+..-....-      ..+..  ++-.-..|..||.+|+..   ++.+++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~---nq~eiv  256 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT---NQPEIV  256 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHc---CCHHHH
Confidence            3457999999999999999999999999997642211100      00000  000124589999999554   999999


Q ss_pred             HHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCc-ccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 037701          141 AEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI-LTRERDRHGWTSLHHAAYLGHSNITSMMLKS  213 (358)
Q Consensus       141 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  213 (358)
                      ++|+++|+|++.+|+.|+|.||..+..-..++...+++.|+. ....++..|.|||.+|++.|..++.+.+++.
T Consensus       257 rlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  257 RLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999999887 3457899999999999999999999999987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=9.5e-18  Score=148.77  Aligned_cols=170  Identities=24%  Similarity=0.279  Sum_probs=132.4

Q ss_pred             chhcccCCCCchhHHHHhc---CCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHH
Q 037701           65 LLLQVNDKGDTPLHVAAKC---RHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVA  141 (358)
Q Consensus        65 ~~~~~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  141 (358)
                      .++.+...|+|.||.|..+   ++.++++.|++.-+..-.+          ........|+||||.|+.+   .+.++++
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind----------~~~~eeY~GqSaLHiAIv~---~~~~~V~  201 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIND----------IYTSEEYYGQSALHIAIVN---RDAELVR  201 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhh----------hhhhHhhcCcchHHHHHHh---ccHHHHH
Confidence            4566778899999999974   4458999999986643211          1334567899999999887   9999999


Q ss_pred             HHHhcCCCCCCCCC-----------------------CCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037701          142 EILENCPSADHRGP-----------------------DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHA  198 (358)
Q Consensus       142 ~Ll~~~~~~~~~~~-----------------------~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a  198 (358)
                      .|++.|+|++.+..                       .|..||.+|+-.++.+++++|++++++ ++.+|..|+|.||.+
T Consensus       202 lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~l  280 (782)
T KOG3676|consen  202 LLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHML  280 (782)
T ss_pred             HHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHH
Confidence            99999999864211                       266788888888888888888888877 677888888888888


Q ss_pred             HHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          199 AYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       199 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      +..-..++..++++.+++  ......+..|.|||.+|++.|..++++.+++.
T Consensus       281 Vi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  281 VIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            888777888888888765  33555677888888888888888888888876

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=8.9e-19  Score=136.70  Aligned_cols=121  Identities=22%  Similarity=0.325  Sum_probs=93.6

Q ss_pred             HHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccc
Q 037701          143 ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY  222 (358)
Q Consensus       143 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  222 (358)
                      |-+...|.|.-|..|.+|||+|++.|+..+++.|+.+|+. .+..+....||||+|+..|+.++++.|++..++    +|
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~kad----vn   94 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD----VN   94 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHhcc----cc
Confidence            3334456677777788888888888888888888888777 566677777888888888888888888877644    77


Q ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHH
Q 037701          223 KEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFA  269 (358)
Q Consensus       223 ~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  269 (358)
                      ..+..|+||||+||..|...+.+-|+..|+. +++.+++|.||+..|
T Consensus        95 avnehgntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldka  140 (448)
T KOG0195|consen   95 AVNEHGNTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhccCCCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhh
Confidence            7788888888888888888888888887765 477788888888776

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.72  E-value=9.7e-17  Score=117.77  Aligned_cols=122  Identities=35%  Similarity=0.516  Sum_probs=74.1

Q ss_pred             cCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCC
Q 037701           70 NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPS  149 (358)
Q Consensus        70 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~  149 (358)
                      +..|.||||+|+..++.+++++|++.+...               ...+..|.||+|.|+..   +..++++.|++.+++
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~---------------~~~~~~g~~~l~~a~~~---~~~~~~~~ll~~~~~   65 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV---------------NAKDNDGRTPLHLAAKN---GHLEIVKLLLEKGAD   65 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC---------------CccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC
Confidence            455666666666666666666666666542               23555666666666544   566666666666665


Q ss_pred             CCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHH
Q 037701          150 ADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMM  210 (358)
Q Consensus       150 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  210 (358)
                      ++..+..+.||+|+|+..++.+++++|+..+.. ....+..+.||++.|...++.+++++|
T Consensus        66 ~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          66 VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            555556666666666666666666666665533 334455556666666666666655554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=1.1e-15  Score=112.15  Aligned_cols=122  Identities=34%  Similarity=0.446  Sum_probs=69.1

Q ss_pred             CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHH
Q 037701          154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH  233 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~  233 (358)
                      +..|.||||+|+..++.+++++|++.+... ...+..|.||++.|+..++.+++++|++.+.    .++..+..+.||+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~l~   78 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA----DVNARDKDGNTPLH   78 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHH
Confidence            344556666666666666666666555442 4445555666666666666666666665553    23344455556666


Q ss_pred             HHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHH
Q 037701          234 LAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSL  281 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  281 (358)
                      +|+..++.+++++|++.+.. .+..+..|.||+++|...++.+++++|
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            66666666666666665432 244555566666666666666555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=2.1e-16  Score=108.08  Aligned_cols=88  Identities=31%  Similarity=0.382  Sum_probs=54.3

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC
Q 037701          195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR  274 (358)
Q Consensus       195 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  274 (358)
                      ||+|++.|+.+++++|++.+.+    ++.    |.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~----~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD----INL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST----TTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC----CCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCC
Confidence            4666666666666666665533    111    56666666666666666666666554 35566666677777776666


Q ss_pred             hhHHHHHhcCccccccccCC
Q 037701          275 GGVLKSLLENPYVISLIHGR  294 (358)
Q Consensus       275 ~~~~~~Ll~~~~~~~~~~~~  294 (358)
                      .+++++|+++|   ++++.+
T Consensus        72 ~~~~~~Ll~~g---~~~~~~   88 (89)
T PF12796_consen   72 LEIVKLLLEHG---ADVNIR   88 (89)
T ss_dssp             HHHHHHHHHTT---T-TTSS
T ss_pred             HHHHHHHHHcC---CCCCCc
Confidence            67777776666   555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=1.8e-16  Score=108.50  Aligned_cols=84  Identities=33%  Similarity=0.445  Sum_probs=62.9

Q ss_pred             hHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCC
Q 037701           77 LHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPD  156 (358)
Q Consensus        77 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~  156 (358)
                      ||+|++.|+.+++++|++.+.+.                  +. |.||||+|+..   ++.+++++|++.|++++.++..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~------------------~~-~~~~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~   58 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI------------------NL-GNTALHYAAEN---GNLEIVKLLLENGADINSQDKN   58 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT------------------TS-SSBHHHHHHHT---TTHHHHHHHHHTTTCTT-BSTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC------------------CC-CCCHHHHHHHc---CCHHHHHHHHHhcccccccCCC
Confidence            67888888888888888866541                  11 67788888654   7888888888888888887778


Q ss_pred             CccHHHHHHhcCcHHHHHHHHHhCCc
Q 037701          157 GLTTLHAAVICNAEDVIKLLLEKKKI  182 (358)
Q Consensus       157 ~~t~l~~a~~~~~~~~v~~Ll~~~~~  182 (358)
                      |.||||+|+..++.+++++|+++|.+
T Consensus        59 g~t~L~~A~~~~~~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   59 GNTALHYAAENGNLEIVKLLLEHGAD   84 (89)
T ss_dssp             SSBHHHHHHHTTHHHHHHHHHHTTT-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88888888888888888888877766

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=1.8e-15  Score=97.18  Aligned_cols=104  Identities=16%  Similarity=0.219  Sum_probs=89.7

Q ss_pred             ChhhhcccccCCchhhhhhhhhhccce-eccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDELVSI-ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      +..+.+++++|.++.|+..+..+ .++ ....|++|||+|+.+|+   .+++++++.    .+++++.+|..|.|||-.|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g-~nVn~~~ggR~plhyAAD~GQ---l~ilefli~----iGA~i~~kDKygITPLLsA   74 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEG-LNVNEIYGGRTPLHYAADYGQ---LSILEFLIS----IGANIQDKDKYGITPLLSA   74 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHcc-ccHHHHhCCcccchHhhhcch---HHHHHHHHH----hccccCCccccCCcHHHHH
Confidence            35678999999999999999998 555 44589999999999999   999999988    4899999999999999999


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHH
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA  128 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a  128 (358)
                      +-.|+.++|++|++.|++.+               ...++|.+.+..+
T Consensus        75 vwEGH~~cVklLL~~GAdrt---------------~~~PdG~~~~eat  107 (117)
T KOG4214|consen   75 VWEGHRDCVKLLLQNGADRT---------------IHAPDGTALIEAT  107 (117)
T ss_pred             HHHhhHHHHHHHHHcCcccc---------------eeCCCchhHHhhc
Confidence            99999999999999999854               4667776655443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=1.7e-13  Score=111.83  Aligned_cols=124  Identities=27%  Similarity=0.350  Sum_probs=65.2

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCc-----HHHHHHHHhhCC--CCcccccC
Q 037701          188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY-----ERVVRRIIRHCP--ESYSIVDN  260 (358)
Q Consensus       188 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~v~~Ll~~~~--~~~~~~~~  260 (358)
                      +..+.++++.++..+..+.+++++..+.+    ++..+..|.||+|+|+..++     .++++.|++.++  +..+..|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGAD----VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCC----cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            34445555555555555555555555532    34445555555555555555     555555555555  33344455


Q ss_pred             CCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecC
Q 037701          261 RGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVP  318 (358)
Q Consensus       261 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~  318 (358)
                      .|+||||+|+..|+.+++..+++.+   ++++.++..|.||++.|+..+...+ ..++.
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAG---ADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcC---CCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            5555555555555555555555555   4555555555555555555555544 44444

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.52  E-value=9.7e-14  Score=89.30  Aligned_cols=102  Identities=18%  Similarity=0.150  Sum_probs=83.6

Q ss_pred             hhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCC
Q 037701           76 PLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGP  155 (358)
Q Consensus        76 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~  155 (358)
                      -+.+++++|..+-|+..+..|-+.+               . ...|++|||+|+..   ++.+++.+|+..|++++.+|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn---------------~-~~ggR~plhyAAD~---GQl~ilefli~iGA~i~~kDK   65 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVN---------------E-IYGGRTPLHYAADY---GQLSILEFLISIGANIQDKDK   65 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHH---------------H-HhCCcccchHhhhc---chHHHHHHHHHhccccCCccc
Confidence            4567888899988888888875532               2 23788999999655   999999999999999999999


Q ss_pred             CCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037701          156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHH  197 (358)
Q Consensus       156 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  197 (358)
                      .|.|||..|+-.|+.++|++|++.|++ ...+..+|.+.+..
T Consensus        66 ygITPLLsAvwEGH~~cVklLL~~GAd-rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   66 YGITPLLSAVWEGHRDCVKLLLQNGAD-RTIHAPDGTALIEA  106 (117)
T ss_pred             cCCcHHHHHHHHhhHHHHHHHHHcCcc-cceeCCCchhHHhh
Confidence            999999999999999999999999888 55667777766543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=2e-14  Score=87.86  Aligned_cols=56  Identities=30%  Similarity=0.453  Sum_probs=29.0

Q ss_pred             HHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHH
Q 037701          247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL  305 (358)
Q Consensus       247 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a  305 (358)
                      |++.++.+++.+|..|+||||+|+..|+.+++++|++.+   ++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g---~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG---ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc---CCCCCCcCCCCCHHHhC
Confidence            456665566788888888888888888888888888777   78888888888888876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=6.3e-13  Score=108.45  Aligned_cols=124  Identities=31%  Similarity=0.433  Sum_probs=63.5

Q ss_pred             cCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCc-----HHHHHHHHHhCC--cccccccCCCC
Q 037701          120 EKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNA-----EDVIKLLLEKKK--ILTRERDRHGW  192 (358)
Q Consensus       120 ~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~v~~Ll~~~~--~~~~~~~~~~~  192 (358)
                      .+.++++.++..   +..++++.++..|++++.++..|.||+|+|+..++     .++++.|++.++  .....++..|.
T Consensus        72 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          72 DGRLPLHSAASK---GDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             cccCHHHHHHHc---CcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            345555555332   55555555555555555555555555555555555     555555555555  33444455555


Q ss_pred             CHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       193 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      ||||+|+..|+.++++.|++.+++    ++..+..|.|+++.|+..+..++++.+++.
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGAD----PNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCC----CcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            555555555555555555555432    333344455555555555555555444443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.5e-12  Score=110.32  Aligned_cols=112  Identities=21%  Similarity=0.382  Sum_probs=52.2

Q ss_pred             hCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhc
Q 037701          133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLK  212 (358)
Q Consensus       133 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  212 (358)
                      -.|.+++++..+..--|+...+..|.|+||-|+..|+.++|++|++.|++ .+..|.+||||||+|+.+++..+++.|++
T Consensus       559 LeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ckqLVe  637 (752)
T KOG0515|consen  559 LEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCKQLVE  637 (752)
T ss_pred             hcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHHHHHh
Confidence            33455555555444444444444455555555555555555555555444 34445555555555555555555555555


Q ss_pred             CCCcccccccccCCCCCCHHHHHH--HcCcHHHHHHHH
Q 037701          213 SEDDKIVALYKEDDRGMTALHLAA--SQGYERVVRRII  248 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~v~~Ll  248 (358)
                      .|+.   .+-.+-.++.|+..-+-  ..|..++.+||.
T Consensus       638 ~Gaa---vfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  638 SGAA---VFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             ccce---EEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            4442   12222334444444332  234444444444

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.38  E-value=1.5e-12  Score=79.29  Aligned_cols=54  Identities=30%  Similarity=0.422  Sum_probs=30.6

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHh
Q 037701          228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLL  282 (358)
Q Consensus       228 g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  282 (358)
                      |+||+|+|++.|+.+++++|++.+.+ ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666444 4556666666666666666666666654

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=3.9e-12  Score=107.81  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=101.3

Q ss_pred             HHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCc
Q 037701          161 LHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY  240 (358)
Q Consensus       161 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  240 (358)
                      |.-|+..|-+++|+..+..-.+ ....+..|.|+||-|++.|+.++|++|++.|+    ++|..|.+|+||||.|+..++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ga----nVNa~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGA----NVNAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCC----cccCccCCCCchhhhhhhcCc
Confidence            3457788999999999866555 56778899999999999999999999999994    589999999999999999999


Q ss_pred             HHHHHHHHhhCCCCcccccCCCCcHHHHH--HHcCChhHHHHHhc
Q 037701          241 ERVVRRIIRHCPESYSIVDNRGWNARHFA--MVSLRGGVLKSLLE  283 (358)
Q Consensus       241 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~  283 (358)
                      ..+++.|++.|+..+-.+-+++.|+..-+  .+.|...+.++|-.
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999999887777778888987765  34677778888764

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.36  E-value=2e-12  Score=101.44  Aligned_cols=122  Identities=16%  Similarity=0.124  Sum_probs=97.7

Q ss_pred             CCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHH
Q 037701           33 KNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW  112 (358)
Q Consensus        33 ~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (358)
                      ...||..++..|+   .+-...|+.   . ...++.+|..|+|||..|+..|+.++|++|++.|++.+.           
T Consensus        12 ~~~~Lle~i~Knd---t~~a~~LLs---~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~-----------   73 (396)
T KOG1710|consen   12 PKSPLLEAIDKND---TEAALALLS---T-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND-----------   73 (396)
T ss_pred             hhhHHHHHHccCc---HHHHHHHHH---H-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc-----------
Confidence            4467778888887   444444433   3 555888999999999999999999999999999988654           


Q ss_pred             HHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHH
Q 037701          113 MLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLE  178 (358)
Q Consensus       113 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~  178 (358)
                         .++..++||||+|+.+   |+.++.+.|++.|+.....++-|+|+-.+|+-.|+.++|..+-.
T Consensus        74 ---~qhg~~YTpLmFAALS---Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   74 ---KQHGTLYTPLMFAALS---GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             ---ccccccccHHHHHHHc---CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence               3677788999999665   89999999999999888888889999999998888888877644

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=2.2e-12  Score=78.54  Aligned_cols=54  Identities=37%  Similarity=0.502  Sum_probs=26.6

Q ss_pred             CCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHH
Q 037701          121 KNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL  177 (358)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll  177 (358)
                      |.||+|+|++.   ++.+++++|++.|.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~---g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARS---GNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHT---T-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            34555555443   5555555555555555555555555555555555555555553

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=3.8e-12  Score=118.30  Aligned_cols=103  Identities=20%  Similarity=0.170  Sum_probs=84.7

Q ss_pred             hhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCC
Q 037701           76 PLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGP  155 (358)
Q Consensus        76 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~  155 (358)
                      .|+.|+..|+.+++++|++.|++               ++..|..|.||||+|+..   ++.+++++|++.|++++.++.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad---------------in~~d~~G~TpLh~Aa~~---g~~eiv~~LL~~Gadvn~~d~  146 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD---------------PNCRDYDGRTPLHIACAN---GHVQVVRVLLEFGADPTLLDK  146 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC---------------CCCcCCCCCcHHHHHHHC---CCHHHHHHHHHCCCCCCCCCC
Confidence            47888899999999999998887               446788899999999665   999999999999999999999


Q ss_pred             CCccHHHHHHhcCcHHHHHHHHHh-------CCcccccccCCCCCHHHH
Q 037701          156 DGLTTLHAAVICNAEDVIKLLLEK-------KKILTRERDRHGWTSLHH  197 (358)
Q Consensus       156 ~~~t~l~~a~~~~~~~~v~~Ll~~-------~~~~~~~~~~~~~t~l~~  197 (358)
                      .|.||||+|+..++.+++++|+.+       ++. ....+..|.+|+..
T Consensus       147 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~  194 (664)
T PTZ00322        147 DGKTPLELAEENGFREVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLE  194 (664)
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCC-CCccccCCCCccch
Confidence            999999999999999999999987       444 34455555555443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=6.2e-12  Score=116.90  Aligned_cols=105  Identities=25%  Similarity=0.243  Sum_probs=71.3

Q ss_pred             cHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc
Q 037701          159 TTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ  238 (358)
Q Consensus       159 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~  238 (358)
                      ..|+.|+..|+.+.++.|++.|++ .+.++..|.||||+|+..|+.+++++|++.|++    ++..+..|.||||+|+..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad----vn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD----PTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHC
Confidence            346677777777777777777766 456677777777777777777777777777743    566677777777777777


Q ss_pred             CcHHHHHHHHhh-------CCCCcccccCCCCcHHHHH
Q 037701          239 GYERVVRRIIRH-------CPESYSIVDNRGWNARHFA  269 (358)
Q Consensus       239 ~~~~~v~~Ll~~-------~~~~~~~~~~~g~t~l~~a  269 (358)
                      |+.+++++|+++       +++ .+..+..|.+|+..+
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLED  195 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCC-CCccccCCCCccchh
Confidence            777777777776       332 234455566654433

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.8e-12  Score=79.20  Aligned_cols=54  Identities=31%  Similarity=0.423  Sum_probs=18.6

Q ss_pred             HhcC-CCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037701          144 LENC-PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHA  198 (358)
Q Consensus       144 l~~~-~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a  198 (358)
                      +++| .+++..|..|.||||+|+..|+.+++++|++.+.+ .+.++..|+||+|+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            3444 45555555555555555555555555555544444 445555555555544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=1.8e-11  Score=96.18  Aligned_cols=124  Identities=25%  Similarity=0.363  Sum_probs=107.4

Q ss_pred             cCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037701          120 EKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA  199 (358)
Q Consensus       120 ~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  199 (358)
                      ..++||.-++.   ++..+-...|++---++|..|..|.+||..|+..|+.++++.|++.|++.+..+...+.|||++|+
T Consensus        11 ~~~~~Lle~i~---Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   11 APKSPLLEAID---KNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             chhhHHHHHHc---cCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            34577887754   488888888887766789999999999999999999999999999999988888899999999999


Q ss_pred             HcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          200 YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      ..|+.++...|++.|+.    ....+.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        88 LSGn~dvcrllldaGa~----~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGAR----MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HcCCchHHHHHHhccCc----cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999954    666788899999999999999988776543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.89  E-value=1.9e-10  Score=102.97  Aligned_cols=89  Identities=26%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCccccc-CCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCC
Q 037701          221 LYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVD-NRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGN  299 (358)
Q Consensus       221 ~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~  299 (358)
                      .+.+|..|++++|+++..+..+++++|+++|.+. ...| ..|+||||-|+..|+.+++..|+++|   ..+..+|+.|.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g---~SL~i~Dkegl  120 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKG---RSLRIKDKEGL  120 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcC---CceEEecccCC
Confidence            5667778888888888888888888888886654 4444 46888888888888888888888888   56666788888


Q ss_pred             hHHHHHHHhCCCCc
Q 037701          300 TPLHVLAAACRDSS  313 (358)
Q Consensus       300 tpL~~a~~~~~~~~  313 (358)
                      +||.+.++-....+
T Consensus       121 splq~~~r~~~~~i  134 (1267)
T KOG0783|consen  121 SPLQFLSRVLSSTI  134 (1267)
T ss_pred             CHHHHHhhcccccc
Confidence            88888776554444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.75  E-value=4.8e-09  Score=54.41  Aligned_cols=28  Identities=32%  Similarity=0.546  Sum_probs=25.7

Q ss_pred             CCCchhHHHHhcCCcHHHHHHHHHHHhh
Q 037701           72 KGDTPLHVAAKCRHPAVVEVLIKFAKKQ   99 (358)
Q Consensus        72 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~   99 (358)
                      +|+||||+||..|+.++|++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999998874

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.74  E-value=3.7e-08  Score=84.98  Aligned_cols=101  Identities=21%  Similarity=0.215  Sum_probs=89.0

Q ss_pred             ccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHH
Q 037701           63 PSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAE  142 (358)
Q Consensus        63 ~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~  142 (358)
                      +..+..++.+..+.||+|++.|+-++|+|++++|+..-             ++..+..|.|+||.|+..   ++-.+.++
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~el-------------ld~~de~get~lhkaa~~---~~r~vc~~  952 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSEL-------------LDMADETGETALHKAACQ---RNRAVCQL  952 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHH-------------HHHHhhhhhHHHHHHHHh---cchHHHHH
Confidence            44567788899999999999999999999999987632             567889999999999654   88999999


Q ss_pred             HHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHh
Q 037701          143 ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK  179 (358)
Q Consensus       143 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~  179 (358)
                      |++.|+.+...|..|.||-..|-+.+..++.-||-..
T Consensus       953 lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  953 LVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999988643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.72  E-value=1.1e-08  Score=86.15  Aligned_cols=94  Identities=23%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHH
Q 037701          188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARH  267 (358)
Q Consensus       188 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  267 (358)
                      ...+..++.+|+..|....++.+.-.|.    +++..|.+.+|+||+|+..|+.+++++|++....+.+.+|.+|+|||.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~----D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGM----DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcc----cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcch
Confidence            3456678899999999999988887774    488899999999999999999999999999988888899999999999


Q ss_pred             HHHHcCChhHHHHHhcCc
Q 037701          268 FAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       268 ~a~~~~~~~~~~~Ll~~~  285 (358)
                      -|...+|.+++++|-+.-
T Consensus       579 dA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhHhcCcHHHHHHHHHHh
Confidence            999999999999998865

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.69  E-value=8.3e-09  Score=92.79  Aligned_cols=95  Identities=23%  Similarity=0.281  Sum_probs=77.7

Q ss_pred             HHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCC-CCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          172 VIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDD-RGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       172 ~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      +..++-.++.+..+.+|..|.|+||+++..+..++++||+++|.+    ++.+|. .|+||||.|+..|+.+++..|+++
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid----v~vqD~ESG~taLHRaiyyG~idca~lLL~~  108 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID----VFVQDEESGYTALHRAIYYGNIDCASLLLSK  108 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce----eeeccccccchHhhHhhhhchHHHHHHHHhc
Confidence            344555566666788899999999999999999999999999854    555554 588999999999999999999999


Q ss_pred             CCCCcccccCCCCcHHHHHHH
Q 037701          251 CPESYSIVDNRGWNARHFAMV  271 (358)
Q Consensus       251 ~~~~~~~~~~~g~t~l~~a~~  271 (358)
                      |.. ..+.|++|..||...++
T Consensus       109 g~S-L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  109 GRS-LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             CCc-eEEecccCCCHHHHHhh
Confidence            865 57889999999988876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.66  E-value=2.4e-08  Score=84.25  Aligned_cols=88  Identities=22%  Similarity=0.269  Sum_probs=78.9

Q ss_pred             hhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHh
Q 037701            4 DLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAK   82 (358)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~   82 (358)
                      .+.+|++.||+..++.+.-.+ .++.+|.+.+|.||+|+..|+   .+++++|++.   ++.+.+.+|..|+|||.-|..
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~---v~v~kfl~~~---~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGH---VEVVKFLLNA---CKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCc---eeHHHHHHHH---HcCCCChhhccCCCcchHhHh
Confidence            478999999999999998776 677799999999999999999   9999998765   677788899999999999999


Q ss_pred             cCCcHHHHHHHHHHH
Q 037701           83 CRHPAVVEVLIKFAK   97 (358)
Q Consensus        83 ~~~~~~v~~Ll~~~~   97 (358)
                      .++.+++++|-+...
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            999999999987643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.65  E-value=2e-08  Score=86.63  Aligned_cols=116  Identities=14%  Similarity=0.118  Sum_probs=92.7

Q ss_pred             HHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCC
Q 037701          233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDS  312 (358)
Q Consensus       233 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~  312 (358)
                      ..|+..+..--+.....+|++. -..+.+..+.||+|+..|+-++++++++++.. ..++..|.+|.|+||-|+..++..
T Consensus       871 l~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~-elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-ELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-HHHHHHhhhhhHHHHHHHHhcchH
Confidence            3444555544455555666653 56788889999999999999999999999864 456667899999999999888877


Q ss_pred             c-eeecCCcchHHHHhhCCCchhhHhhhCCCCccccccee
Q 037701          313 S-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLL  351 (358)
Q Consensus       313 ~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  351 (358)
                      + .+|.+.||.+...|..|+||-.-|... +..++..||-
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa-~d~dlaayle  987 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQA-GDPDLAAYLE  987 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhc-CCchHHHHHh
Confidence            7 999999999999999999999988775 7788777663

>PF13606 Ank_3: Ankyrin repeat

Probab=98.63  E-value=3.5e-08  Score=51.12  Aligned_cols=24  Identities=29%  Similarity=0.268  Sum_probs=12.6

Q ss_pred             CCcHHHHHHHcCChhHHHHHhcCc
Q 037701          262 GWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       262 g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      |+||||+|+..|+.+++++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            445555555555555555555554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.60  E-value=5.3e-08  Score=52.11  Aligned_cols=31  Identities=29%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             CCcHHHHHHHcCChhHHHHHhcCccccccccCCC
Q 037701          262 GWNARHFAMVSLRGGVLKSLLENPYVISLIHGRD  295 (358)
Q Consensus       262 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  295 (358)
                      |.||||+|+..++.+++++|+++|   ++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~g---a~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHG---ADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTT---SCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCc---CCCCCCC
Confidence            566666666666666666666666   5555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.52  E-value=5.1e-07  Score=76.80  Aligned_cols=85  Identities=25%  Similarity=0.311  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCC-CccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC
Q 037701          124 ALHEAVQSAAKGSVEMVAEILENCPSADHRGPD-GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG  202 (358)
Q Consensus       124 ~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  202 (358)
                      -||..++.   ++.+..-.|+..|+++|+.+.+ |.||||.|++.|...-+++|+-.|++ +...|.+|.||+.+|-..|
T Consensus       136 QLhasvRt---~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  136 QLHSSVRT---GNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHhhc---ccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhcC
Confidence            47777665   8999999999999999987765 88999999999999999999988888 6788999999999999999


Q ss_pred             CHHHHHHHhc
Q 037701          203 HSNITSMMLK  212 (358)
Q Consensus       203 ~~~~~~~Ll~  212 (358)
                      +.++.+.|++
T Consensus       212 H~~laeRl~e  221 (669)
T KOG0818|consen  212 HHELAERLVE  221 (669)
T ss_pred             chHHHHHHHH
Confidence            8887776654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.46  E-value=1e-06  Score=75.02  Aligned_cols=95  Identities=24%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             CCCCCCCcc------HHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccccc
Q 037701          151 DHRGPDGLT------TLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKE  224 (358)
Q Consensus       151 ~~~~~~~~t------~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  224 (358)
                      ..+|.+|.+      -||.+++.++.+..-.|+..|++.+......|.||||.|++.|+.--+++|.-+|+|    +...
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD----~~a~  196 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD----PGAQ  196 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC----CCCC
Confidence            345556544      388999999999988889999998888888999999999999999999999999966    7778


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHh
Q 037701          225 DDRGMTALHLAASQGYERVVRRIIR  249 (358)
Q Consensus       225 ~~~g~t~l~~a~~~~~~~~v~~Ll~  249 (358)
                      |..|.||+.+|-..|+-++.+.|++
T Consensus       197 d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999998877666654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.44  E-value=3.7e-07  Score=48.77  Aligned_cols=31  Identities=32%  Similarity=0.444  Sum_probs=17.9

Q ss_pred             CCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCC
Q 037701          121 KNTALHEAVQSAAKGSVEMVAEILENCPSADHRG  154 (358)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~  154 (358)
                      |.||||+|+..   ++.+++++|+++|++++.++
T Consensus         2 G~TpLh~A~~~---~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQR---GHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHT---TCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHH---HHHHHHHHHHHCcCCCCCCC
Confidence            55666666443   56666666666666655543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.37  E-value=9.7e-07  Score=76.01  Aligned_cols=89  Identities=33%  Similarity=0.528  Sum_probs=65.9

Q ss_pred             cHHHHHHhcCcHH-HHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHH
Q 037701          159 TTLHAAVICNAED-VIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS  237 (358)
Q Consensus       159 t~l~~a~~~~~~~-~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~  237 (358)
                      .|+|+++.....+ +.+.+...-+..+..+|..|.||||+|+..|+.+.++.|+..+++    ...++..|++|||.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad----v~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD----VSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC----ccccccccccHHHHHHH
Confidence            4588877665544 333343333444667888888888888888888888888888865    66678888888888888


Q ss_pred             cCcHHHHHHHHhhC
Q 037701          238 QGYERVVRRIIRHC  251 (358)
Q Consensus       238 ~~~~~~v~~Ll~~~  251 (358)
                      .|+.+++..++.+.
T Consensus        98 ~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   98 TGNEQIITEVLRHL  111 (560)
T ss_pred             cCCHHHHHHHHHHh
Confidence            88888887777764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.33  E-value=3.3e-07  Score=79.42  Aligned_cols=89  Identities=16%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             hhhcccccCCchhhhhhhhhhc---cce--eccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhH
Q 037701            4 DLYRDAAKGEIEPFNEIAKDEL---VSI--ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLH   78 (358)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~~---~~~--~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh   78 (358)
                      .|..|+...|+..+-.||.++.   ++.  -+.+|.|+||+|++.|+   ..+.+.|++    ++.++..+|..|+|+|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gn---Vvl~QLLiW----yg~dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGN---VVLAQLLIW----YGVDVMARDAHGRTALF  699 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcc---hhHHHHHHH----hCccceecccCCchhhh
Confidence            4677888899999999999872   222  56678999999999999   888888887    79999999999999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHhh
Q 037701           79 VAAKCRHPAVVEVLIKFAKKQ   99 (358)
Q Consensus        79 ~A~~~~~~~~v~~Ll~~~~~~   99 (358)
                      ||-+.|..|++..|+.+|...
T Consensus       700 yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hHhhcccHHHHHHHHHcCCCc
Confidence            999999999999999998764

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.32  E-value=8.6e-07  Score=76.31  Aligned_cols=89  Identities=12%  Similarity=0.165  Sum_probs=78.2

Q ss_pred             hhhhcccccCCchhhhhhhhhh---ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE---LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHV   79 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~   79 (358)
                      .++|+++...+.+.+...+...   .++..|..|.||||.|+..|+   .+.++.|+.    .++++..+|..|.+|||.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~---~~~a~~Ll~----a~Adv~~kN~~gWs~L~E   94 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGH---VEAARILLS----AGADVSIKNNEGWSPLHE   94 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcC---HHHHHHHHh----cCCCccccccccccHHHH
Confidence            4699999999999998877765   567799999999999999999   888888877    688899999999999999


Q ss_pred             HHhcCCcHHHHHHHHHHHh
Q 037701           80 AAKCRHPAVVEVLIKFAKK   98 (358)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~   98 (358)
                      |+..|+.+++..++.+-..
T Consensus        95 Av~~g~~q~i~~vlr~~~~  113 (560)
T KOG0522|consen   95 AVSTGNEQIITEVLRHLKY  113 (560)
T ss_pred             HHHcCCHHHHHHHHHHhHH
Confidence            9999999999988876543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.31  E-value=2.5e-06  Score=74.19  Aligned_cols=91  Identities=22%  Similarity=0.183  Sum_probs=68.3

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC
Q 037701          195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR  274 (358)
Q Consensus       195 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  274 (358)
                      |.-|....+...+-+|+.+|....++-...+.+|.|+||+|++.|+..+.++|+=++.+ +..+|..|+|+|.||=+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhccc
Confidence            44555556677777788777665555555566778888888888888888888855444 57788888888888888888


Q ss_pred             hhHHHHHhcCcc
Q 037701          275 GGVLKSLLENPY  286 (358)
Q Consensus       275 ~~~~~~Ll~~~~  286 (358)
                      .+++..|+++|.
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            888888888885

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.16  E-value=6e-06  Score=75.45  Aligned_cols=123  Identities=18%  Similarity=0.183  Sum_probs=98.9

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH  152 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~  152 (358)
                      +.--.-.|+.+|+.-.|+..++......  .+         ++..|.-|.++++.|+.+   .+.+++++|++.+...  
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~--ln---------inc~d~lGr~al~iai~n---enle~~eLLl~~~~~~--   88 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSK--LN---------INCRDPLGRLALHIAIDN---ENLELQELLLDTSSEE--   88 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccc--cc---------hhccChHhhhceeccccc---ccHHHHHHHhcCcccc--
Confidence            3445678999999999999998755411  11         668999999999999765   9999999999876543  


Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhCCcc---------cccccCCCCCHHHHHHHcCCHHHHHHHhcCCCc
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKIL---------TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD  216 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~---------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  216 (358)
                           ..+|.+|+..+..++|+.++.+....         ....-..+.||+.+||..++.|+++.|+++|..
T Consensus        89 -----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   89 -----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence                 46888999999999999999875432         223456678999999999999999999999864

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.14  E-value=8.9e-06  Score=74.37  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=15.8

Q ss_pred             CccHHHHHHhcCcHHHHHHHHHhCCcc
Q 037701          157 GLTTLHAAVICNAEDVIKLLLEKKKIL  183 (358)
Q Consensus       157 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~  183 (358)
                      +.||+.+|+..+++|+++.|+.+|+..
T Consensus       131 ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  131 DITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             CccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            455666666666666666666555543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.12  E-value=1.1e-06  Score=82.10  Aligned_cols=87  Identities=21%  Similarity=0.242  Sum_probs=73.3

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhh
Q 037701          260 NRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVR  338 (358)
Q Consensus       260 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~  338 (358)
                      ..|.|+||.|+..+..-...+|+++|   +++|.+|..|++|+|.+...|+... .+|++.|++++..+..|++|+++|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g---a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG---ADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC---CcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh
Confidence            34688999999999999999999998   8899999999999999999998888 8888899999999999999999986


Q ss_pred             hCCCCcccccce
Q 037701          339 YGYPELEVIPSL  350 (358)
Q Consensus       339 ~~~~~~~~~~~L  350 (358)
                      .. .+.+++-.+
T Consensus       731 ~~-~~~d~~~l~  741 (785)
T KOG0521|consen  731 EA-ANADIVLLL  741 (785)
T ss_pred             hh-ccccHHHHH
Confidence            65 555554433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.99  E-value=1.4e-05  Score=59.71  Aligned_cols=65  Identities=26%  Similarity=0.365  Sum_probs=38.7

Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhC
Q 037701          184 TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       184 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      ++.+|..|+|++++|+..|..+.+.+|+.+|.   +.+-..+..+.+.+.+|-+.|..++++.|.+..
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~---a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGV---AFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCc---ccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            45566666666666666666666666666662   224445556666666666666666666665553

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.91  E-value=1.4e-05  Score=75.03  Aligned_cols=84  Identities=21%  Similarity=0.289  Sum_probs=77.0

Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHH
Q 037701          226 DRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL  305 (358)
Q Consensus       226 ~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a  305 (358)
                      ..|.|++|.|+..+..-++++|++++++ ++..|..|+||+|.+...|+...+..++++|   ++.++.+..|.+||++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~---a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRG---ADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccc---ccccccCccCcchhhHH
Confidence            3578999999999999999999999887 7999999999999999999999999999988   88899999999999999


Q ss_pred             HHhCCCCc
Q 037701          306 AAACRDSS  313 (358)
Q Consensus       306 ~~~~~~~~  313 (358)
                      ....+.+.
T Consensus       730 ~~~~~~d~  737 (785)
T KOG0521|consen  730 MEAANADI  737 (785)
T ss_pred             hhhccccH
Confidence            88865555

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.78  E-value=0.00012  Score=54.87  Aligned_cols=66  Identities=15%  Similarity=0.204  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 037701          148 PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKS  213 (358)
Q Consensus       148 ~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  213 (358)
                      .++|.+|..|+|++++|+..|..+.+.||+.+|.......+..+.+.+.+|-+.|..+++..|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            356666666777777777677777777777666555566666666677666666666666666654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.78  E-value=2.3e-05  Score=73.39  Aligned_cols=128  Identities=24%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHH
Q 037701          154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH  233 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~  233 (358)
                      ...|.+.+|++...+...+++.+++-.......-+..|.-.+|+|+..|..-.+..+.-.+    ..++.+|..|+||||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~----~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADG----VAIDIRDRNGWTPLH  646 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecc----cccccccCCCCcccc
Confidence            3346677777777777666666666411113344555556666654444332222222223    335666777777777


Q ss_pred             HHHHcCcHHHHHHHHhhCCCCcc-----cccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          234 LAASQGYERVVRRIIRHCPESYS-----IVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~~~~~~~-----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      +|+..|+..++..|++.+++.--     .....|.|+...|-..|+..+..+|-+..
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~  703 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKA  703 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhH
Confidence            77777777777777766544321     12234666666666666666666666653

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.76  E-value=4.5e-05  Score=63.23  Aligned_cols=72  Identities=19%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             chhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCC
Q 037701           75 TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRG  154 (358)
Q Consensus        75 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~  154 (358)
                      --|..||+.|..+.|++|++.|.+               ++..|....+||.+|+..   |+..+++.|+++|+-+....
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn---------------VN~vD~fD~spL~lAsLc---GHe~vvklLLenGAiC~rdt   99 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN---------------VNAVDRFDSSPLYLASLC---GHEDVVKLLLENGAICSRDT   99 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC---------------cchhhcccccHHHHHHHc---CcHHHHHHHHHcCCcccccc
Confidence            358899999999999999999888               667899999999999776   99999999999999887666


Q ss_pred             CCCccHHHHH
Q 037701          155 PDGLTTLHAA  164 (358)
Q Consensus       155 ~~~~t~l~~a  164 (358)
                      .+|...+.-|
T Consensus       100 f~G~RC~Yga  109 (516)
T KOG0511|consen  100 FDGDRCHYGA  109 (516)
T ss_pred             cCcchhhhhh
Confidence            6676654333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.73  E-value=7.5e-05  Score=70.07  Aligned_cols=131  Identities=21%  Similarity=0.239  Sum_probs=98.2

Q ss_pred             hhcccCCcHHHHHHHHHhCCcHHHHHHHHhc-CCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCH
Q 037701          116 VENEEKNTALHEAVQSAAKGSVEMVAEILEN-CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTS  194 (358)
Q Consensus       116 ~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~  194 (358)
                      .....|.+.+|.+..   .+...+++.+++- |......+.+|.-.+|+++ .+.++..-+++......++.+|..|+||
T Consensus       569 ~~~~r~~lllhL~a~---~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAE---LLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cCCCcchHHHHHHHH---HhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcc
Confidence            455678999999955   4888899999885 6666666777777888844 4555555555544444478899999999


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCccccccc--ccCCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          195 LHHAAYLGHSNITSMMLKSEDDKIVALY--KEDDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       195 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      ||+|+..|+..++..|...++++....+  .....|.|+-..|..+|+..+.-+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999988776655433  3445688999999888887776665543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.64  E-value=0.00017  Score=59.90  Aligned_cols=69  Identities=29%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHH
Q 037701          123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSL  195 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  195 (358)
                      --|..|++.   |+.+.++.|++.|.++|..|..-.+||.+|+..|+.++|++|++.|+.. ......|..++
T Consensus        38 ~elceacR~---GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~  106 (516)
T KOG0511|consen   38 GELCEACRA---GDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCH  106 (516)
T ss_pred             HHHHHHhhc---ccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhh
Confidence            346777665   9999999999999999999999999999999999999999999999873 23334455443

>smart00248 ANK ankyrin repeats

Probab=96.76  E-value=0.0011  Score=33.47  Aligned_cols=27  Identities=37%  Similarity=0.559  Sum_probs=23.3

Q ss_pred             CCCchhHHHHhcCCcHHHHHHHHHHHh
Q 037701           72 KGDTPLHVAAKCRHPAVVEVLIKFAKK   98 (358)
Q Consensus        72 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~   98 (358)
                      .|.||+|+|+..++.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            368999999999999999999987654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.24  E-value=0.078  Score=40.13  Aligned_cols=138  Identities=12%  Similarity=-0.003  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC
Q 037701          124 ALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGH  203 (358)
Q Consensus       124 ~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~  203 (358)
                      .+..|+..   +...+++..-+...+-   -....+.+..||+..+.++|+|+-+.      ..-.+..+.+..|....+
T Consensus        49 Ll~HAVk~---nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn------L~i~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   49 LLYHAVKY---NMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN------LHIYNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHc---CcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc------cCCCCchhhhhhhhhccc
Confidence            34556555   8888888776653211   12356788899999999999999432      223445667788888888


Q ss_pred             HHHHH----HHhcCCCcc-cccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHH
Q 037701          204 SNITS----MMLKSEDDK-IVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVL  278 (358)
Q Consensus       204 ~~~~~----~Ll~~~~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  278 (358)
                      .++..    ++.++.... ..++   ..--..-|..|+.+|..+.+...++.|+.. +      .++|..|+..++..++
T Consensus       117 lsLyslGY~l~~~~~~~~~~~d~---~~ll~~hl~~a~~kgll~F~letlkygg~~-~------~~vls~Av~ynhRkIL  186 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMSEHNEDP---TSLLTQHLEKAAAKGLLPFVLETLKYGGNV-D------IIVLSQAVKYNHRKIL  186 (192)
T ss_pred             hhHHHHHHHHHHhhcccccccCH---HHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-c------HHHHHHHHHhhHHHHH
Confidence            77643    233332110 0000   000113467899999999999999987763 2      2899999999999888


Q ss_pred             HHHhc
Q 037701          279 KSLLE  283 (358)
Q Consensus       279 ~~Ll~  283 (358)
                      ..++.
T Consensus       187 ~yfi~  191 (192)
T PF03158_consen  187 DYFIR  191 (192)
T ss_pred             HHhhc
Confidence            88764

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=96.16  E-value=0.0078  Score=30.02  Aligned_cols=23  Identities=43%  Similarity=0.629  Sum_probs=11.0

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhh
Q 037701          228 GMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       228 g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      |.||+|+|+..++.++++.|++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            34444444444444444444444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.98  E-value=0.0083  Score=52.14  Aligned_cols=45  Identities=22%  Similarity=0.203  Sum_probs=31.9

Q ss_pred             cccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Q 037701          118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAV  165 (358)
Q Consensus       118 ~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  165 (358)
                      +....|+||+|+.+   +..+++.++++.|+|+..+|..|.||..++.
T Consensus       427 ~~ltsT~LH~aa~q---g~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQ---GARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhc---chHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            33356777777554   7777777777777777777777777777665

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.37  E-value=0.36  Score=36.69  Aligned_cols=137  Identities=16%  Similarity=0.075  Sum_probs=89.7

Q ss_pred             CchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCC
Q 037701           74 DTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR  153 (358)
Q Consensus        74 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~  153 (358)
                      ...|..|++.+-..|++..-+....                  .-...++.+-.||+.   ++.++|+|+-++-.     
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~------------------~~~~~q~LFElAC~~---qkydiV~WI~qnL~-----  100 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLEN------------------ERYLNQELFELACEE---QKYDIVKWIGQNLH-----  100 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhc------------------chhHHHHHHHHHHHH---ccccHHHHHhhccC-----
Confidence            3457788888888888877665322                  123556778889776   99999999955422     


Q ss_pred             CCCCccHHHHHHhcCcHHHHH----HHHHhCCcccccccCCCC----CHHHHHHHcCCHHHHHHHhcCCCcccccccccC
Q 037701          154 GPDGLTTLHAAVICNAEDVIK----LLLEKKKILTRERDRHGW----TSLHHAAYLGHSNITSMMLKSEDDKIVALYKED  225 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~----t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  225 (358)
                      -.+-.+.+..|......++..    ++.++...   ..+.+..    .-|..|+..|-...+-..+..|.+         
T Consensus       101 i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~---~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~---------  168 (192)
T PF03158_consen  101 IYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMS---EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN---------  168 (192)
T ss_pred             CCCchhhhhhhhhccchhHHHHHHHHHHhhccc---ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc---------
Confidence            122356677888887776522    22222111   0011111    236789999999888777877754         


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHh
Q 037701          226 DRGMTALHLAASQGYERVVRRIIR  249 (358)
Q Consensus       226 ~~g~t~l~~a~~~~~~~~v~~Ll~  249 (358)
                       ...+.|..|+..++..++.+++.
T Consensus       169 -~~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  169 -VDIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             -ccHHHHHHHHHhhHHHHHHHhhc
Confidence             12278999999999999988874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.18  E-value=0.054  Score=47.35  Aligned_cols=62  Identities=24%  Similarity=0.198  Sum_probs=30.1

Q ss_pred             HHHHHHHHhcCCCCCCC------CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037701          137 VEMVAEILENCPSADHR------GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA  199 (358)
Q Consensus       137 ~~~~~~Ll~~~~~~~~~------~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  199 (358)
                      ...+..|.+++.+.|..      +....|+||+|+..|...+|.++++.+.+ ...+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            44455555555444321      11233455555555555555555555533 4445555555554443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.17  E-value=0.12  Score=40.40  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhCCcccc---cccCCCCCHHHHHHHcCCHHHHHHHhcCCC
Q 037701          170 EDVIKLLLEKKKILTR---ERDRHGWTSLHHAAYLGHSNITSMMLKSED  215 (358)
Q Consensus       170 ~~~v~~Ll~~~~~~~~---~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  215 (358)
                      ..++++++++|-...+   .+-.+|.|.|.-|...++.+++..|+.+|+
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            4455555555433222   233455556666666666666666665554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.91  E-value=0.34  Score=38.10  Aligned_cols=117  Identities=15%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             HHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc--
Q 037701          161 LHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ--  238 (358)
Q Consensus       161 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~--  238 (358)
                      |.-|+...+++.+.-++....+        -.+++.+++..+..+++-+|+..-.-...++-.. ..+..-+.++...  
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h~  227 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEHS  227 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhcC
Confidence            4456666666666555543222        2346666666666666666665421100111111 1122234444332  


Q ss_pred             CcHHHHHHHHhhCCCCccc---ccCCCCcHHHHHHHcCChhHHHHHhcCcc
Q 037701          239 GYERVVRRIIRHCPESYSI---VDNRGWNARHFAMVSLRGGVLKSLLENPY  286 (358)
Q Consensus       239 ~~~~~v~~Ll~~~~~~~~~---~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  286 (358)
                      .+..++++++.+|-.++|.   +-..|.|-|.-|++.++.+++..|+++|.
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            3566788888887655553   34568888888888888888888888883

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.54  E-value=0.39  Score=31.07  Aligned_cols=48  Identities=23%  Similarity=0.274  Sum_probs=37.8

Q ss_pred             CchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhc
Q 037701           74 DTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEN  146 (358)
Q Consensus        74 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~  146 (358)
                      ...+.+|+..|+.|+++.+++.+..                      ....+..|+..   .+-+++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~----------------------~~~~l~~AI~~---H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP----------------------DNDCLEYAIKS---HNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc----------------------HHHHHHHHHHH---hhHHHHHHHHHh
Confidence            3568899999999999999875422                      13678888876   888999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.66  E-value=0.83  Score=29.56  Aligned_cols=45  Identities=16%  Similarity=0.206  Sum_probs=22.8

Q ss_pred             HHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhc
Q 037701          231 ALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE  283 (358)
Q Consensus       231 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  283 (358)
                      .+..|+..|+.++++.+++.+...        ...+..|+...+.+++++|++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHH
Confidence            345555555555555555432111        234555555555555555555

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=86.02  E-value=6.4  Score=33.79  Aligned_cols=17  Identities=12%  Similarity=-0.029  Sum_probs=8.6

Q ss_pred             eccCCCceehhhhcccc
Q 037701           29 ATHEKNTVLHVNIASQQ   45 (358)
Q Consensus        29 ~~~~~~t~l~~a~~~~~   45 (358)
                      .+..|...+...+..+.
T Consensus        53 ~~~~g~~vvq~~l~~~~   69 (322)
T cd07920          53 VDPFGNYVIQKLFEHGT   69 (322)
T ss_pred             cCccccHHHHHHHHhCC
Confidence            44455555555555544

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-07
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		6e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		7e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-04

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
           RD  GWT LH AA+ GH  I  ++LK+  D    +  +D  G+T LHLAA +G+  +V  
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLLKNGAD----VNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
           ++++  +  +  D+ G+   H A       +++ LL+N    + ++ +DK G T   +
Sbjct: 99  LLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNG---ADVNAQDKFGKTAFDI 152

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 17/130 (13%)
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
           G T LH AA  GH  +  ++L++  D    +  +D  G T LHLAA  G+  VV+ ++  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLL-- 55
Query: 251 CPESYSIVDNRGWNARHFAMVSLRGG---VLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
             E+ + V+ +  N R    ++ R G   V+K LLE     + ++ +DKNG TPLH+   
Sbjct: 56  --EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHL--- 107
Query: 308 ACRDSSYFIV 317
           A R+    +V
Sbjct: 108 AARNGHLEVV 117

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  GWT LH AAY GH  I  ++LK+  D    +  +D  G+T LHLAA +G+  VV  +
Sbjct: 44  DHVGWTPLHLAAYFGHLEIVEVLLKNGAD----VNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 248 IRHCPESYSIVDNRGWNARHFA 269
           +++  +  +  D+ G+   H A
Sbjct: 100 LKNGAD-VNANDHNGFTPLHLA 120

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 40/280 (14%)
Query: 27  SIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHP 86
           ++AT   +T LH+   + +EG     E V  +LE   S    +  KG TPLHVAAK    
Sbjct: 107 NLATTAGHTPLHI---AAREGH---VETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKV 159
Query: 87  AVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEN 146
            V E+L++     +   ++G+               T LH AV      ++++V  +L  
Sbjct: 160 RVAELLLERDAHPNAAGKNGL---------------TPLHVAVH---HNNLDIVKLLLPR 201
Query: 147 CPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNI 206
             S      +G T LH A   N  +V             E  + G T LH AA  GH+ +
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEM 260
Query: 207 TSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVD---NRGW 263
            +++L  + +  +     +  G+T LHL A +G+  V   +I+H      +VD     G+
Sbjct: 261 VALLLSKQANGNLG----NKSGLTPLHLVAQEGHVPVADVLIKHG----VMVDATTRMGY 312
Query: 264 NARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
              H A       ++K LL++    + ++ + K G +PLH
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQ---ADVNAKTKLGYSPLH 349

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 117/299 (39%), Gaps = 47/299 (15%)
Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELES-----------GVDWIRWMLLVEN 118
           N K +TPLH+AA+  H  V + L++   K + + +            G   +  +LL  N
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103
Query: 119 EEKN---TALHEAVQSAAK-GSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXX 174
              N   TA H  +  AA+ G VE V  +LE   S       G T LH A       V  
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163
Query: 175 XXXXXXXXXTRERDRH-------GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDR 227
                      ERD H       G T LH A +  + +I  ++L          +     
Sbjct: 164 LLL--------ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP----HSPAWN 211
Query: 228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYV 287
           G T LH+AA Q    V R ++++   S +    +G    H A       ++  LL     
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 288 ISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEV 346
            +L    +K+G TPLH++A          VP +D+   + K    V+   R GY  L V
Sbjct: 271 GNL---GNKSGLTPLHLVAQEGH------VPVADV---LIKHGVMVDATTRMGYTPLHV 317

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRH 190
           + + G  E V  +LE     ++   DGLT LH A I +  D+            +  D  
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNE 105
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHL---------------- 234
           GW  LH AA  G+ +I   ++ S+   + A+  E D  +                     
Sbjct: 106 GWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164
Query: 235 ---AASQGYERVVRRIIRHCPESYSIVDNR----GWNARHFAMVSLRGGVLKSLLENPYV 287
              AA +  ER++ R  R    S  I D R    G  A H A       VLK L++  Y 
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 288 ISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDS--DMYEAVNK 328
           +++   +D +G TPLH  A   ++ +  I+ ++  DM EAVNK
Sbjct: 225 VNI---KDYDGWTPLHAAAHWGKEEACRILVENLCDM-EAVNK 263

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
           +++A  G+ + V +++EN    +    DG T LH A     ++V              +D
Sbjct: 9   IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKD 67
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
             G T LHHAA  GH  +  +++     K   +  +D  G T LH AA  G++ VV+ +I
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  G+T LH AAY GH  I  ++LK+  D    +   D  GMT LHLAA  GY  +V  +
Sbjct: 77  DVFGYTPLHLAAYWGHLEIVEVLLKNGAD----VNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 248 IRHCPE 253
           ++H  +
Sbjct: 133 LKHGAD 138

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
           +++A  G+ + V ++LEN    +    DG T LH A     ++V              +D
Sbjct: 9   IEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNAKD 67
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
             G T LH AA  GH  +  ++L    D       +D  G T LHLAA  G++ VV+ ++
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGADPNA----KDSDGKTPLHLAAENGHKEVVKLLL 123

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  G T LH AA  GH  +  ++L    D       +D  G T LHLAA  G++ VV+ +
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA----KDSDGKTPLHLAAENGHKEVVKLL 89
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE---NPYVISLIHGRDKNGNTPLHV 304
           +    +  +  D+ G    H A  +    V+K LL    +P         D +G TPL +
Sbjct: 90  LSQGADPNA-KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNT------SDSDGRTPLDL 142

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVXXXXXXXXXXXTRER 187
           +++A  G  + V  ++ N    +     G T LH AA I + E V            R+ 
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDT 78
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  GWT LH AA  GH  I  ++LK   D    +  +D  G+T LHLAA +G+  +V  +
Sbjct: 79  D--GWTPLHLAADNGHLEIVEVLLKYGAD----VNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 248 IRHCPE 253
           ++H  +
Sbjct: 133 LKHGAD 138

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
           +++A  G+ + V +++EN    +    DG T LH A     +++              +D
Sbjct: 9   IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKD 67
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
             G T LH+AA  GH  I  +++    D    +  +D  G T LH AA +G++ +V+ +I
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGAD----VNAKDSDGRTPLHYAAKEGHKEIVKLLI 123

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
           +++A  G+ + V ++LEN    +    DG T LH A     +++              +D
Sbjct: 9   IEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKD 67
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
             G T LH+AA  GH  I  ++L    D       +D  G T LH AA  G++ +V+ ++
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGADPNA----KDSDGRTPLHYAAENGHKEIVKLLL 123

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
           +D+ G+T LH AA  GH  I  ++LK+  D    +  +D  G T LHLAA +G+  +V  
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL 302
           +++      +  D  G+   H A       +++ LL+     + ++ +DK G TP 
Sbjct: 87  LLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK---AGADVNAQDKFGKTPF 138

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
           +D+ G+T LH AA  GH  I  ++LK+  D    +  +D  G T LHLAA +G+  +V  
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL 302
           +++      +  D  G+   H A       +++ LL+     + ++ +DK G TP 
Sbjct: 87  LLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTPF 138

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
           +++A  G  + V  ++ N    +     G+T LH  V+ N                   D
Sbjct: 19  LEAARAGQDDEVRILMANGADVNANDWFGITPLHL-VVNNGHLEIIEVLLKYAADVNASD 77
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
           + GWT LH AAY GH  I  ++LK   D    +   D +G T LHLAA  G+  +V  ++
Sbjct: 78  KSGWTPLHLAAYRGHLEIVEVLLKYGAD----VNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 249 RHCPE 253
           ++  +
Sbjct: 134 KYGAD 138

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  G T LH AA LGH  I  ++LK   D    +  ED+ G+T LHLAA +G+  +V  +
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKYGAD----VNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 248 IRHCPE 253
           ++H  +
Sbjct: 100 LKHGAD 105

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  G+T LH AA  GH  I  ++LK+  D    +   D  G+T LHLAA+ G+  +V  +
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGAD----VNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 248 IRHCPESYSIVDNRGWNARHFA 269
           ++H  +  +  DN G    H A
Sbjct: 100 LKHGAD-VNAYDNDGHTPLHLA 120

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
           +++AA G  + V  ++ N    +    +GLT LH A   N +                 D
Sbjct: 11  LEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAA-ANGQLEIVEVLLKNGADVNASD 69
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
             G T LH AAY GH  I  ++LK   D  V  Y  D  G T LHLAA  G   +V  ++
Sbjct: 70  SAGITPLHLAAYDGHLEIVEVLLKHGAD--VNAY--DRAGWTPLHLAALSGQLEIVEVLL 125
Query: 249 RHCPE 253
           +H  +
Sbjct: 126 KHGAD 130

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 55  VEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWML 114
           V+ +L   PSLLLQ +  G  PLH +   +   +   L+  +K ++  L+   D   W  
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENC--PSADHRGPDGLTTLHAAVICNAEDV 172
                   T  H A    + G++E+V  + +    P  +     G+T LH AV     +V
Sbjct: 74  --------TPFHIA---CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 173 XXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
                       R +D+     LH AA +G   +  ++         A+  +D +G T L
Sbjct: 123 SQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPL 178
Query: 233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
             A ++G+      ++      Y +VDN+G  A     V+L   V K  L N
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFFLNN 227

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 55  VEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWML 114
           V+ +L   PSLLLQ +  G  PLH +   +   +   L+  +K ++  L+   D   W  
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENC--PSADHRGPDGLTTLHAAVICNAEDV 172
                   T  H A    + G++E+V  + +    P  +     G+T LH AV     +V
Sbjct: 74  --------TPFHIA---CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 173 XXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
                       R +D+     LH AA +G   +  ++         A+  +D +G T L
Sbjct: 123 SQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPL 178
Query: 233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
             A ++G+      ++      Y +VDN+G  A     V+L   V K  L N
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFFLNN 227

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  G T LH AA+ GH  I  ++LK+  D    +  +DD G+T LHLAA++G+  +V  +
Sbjct: 77  DTLGSTPLHLAAHFGHLEIVEVLLKNGAD----VNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 248 IRHCPE 253
           +++  +
Sbjct: 133 LKYGAD 138

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 55  VEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWML 114
           V+ +L   PSLLLQ +  G  PLH +   +   +   L+  +K ++  L+   D   W  
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENC--PSADHRGPDGLTTLHAAVICNAEDV 172
                   T  H A    + G++E+V  + +    P  +     G+T LH AV     +V
Sbjct: 74  --------TPFHIA---CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 173 XXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
                       R +D+     LH AA +G   +  ++         A+  +D +G T L
Sbjct: 123 SQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPL 178
Query: 233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
             A ++G+      ++      Y +VDN+G  A     V+L   V K  L N
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFFLNN 227

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
           +D+ G+T LH AA  GH  I  ++LK+  D    +  +D  G T LHLAA +G+  +V  
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 247 IIRHCPESYSIVDNRGWNARHFA 269
           +++   +  +  D  G+   H A
Sbjct: 99  LLKAGAD-VNAKDKDGYTPLHLA 120

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  GWT LH AA+ GH  I  ++LK+  D    +   D  GMT L LAA  G+  +V  +
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGAD----VNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
           +++  +  +  D  G    H A +     +++ LL+N    + ++ +DK G T   +
Sbjct: 100 LKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAFDI 152

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
           +E   +AA+G +E +  +L+N  + + +   G T L    + N E              +
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
             DR G+  +H AA  G  +    +L+++ D  +    ED+ G   LHLAA +G+ RVV 
Sbjct: 67  --DRTGFAVIHDAARAGFLDTLQTLLENQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
            +++H   +    +++G  A   A +  R            V+SL+      G T L 
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRN----------EVVSLMQANGAGGATNLQ 168

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
           +E   +AA+G +E +  +L+N  + + +   G T L    + N E              +
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
             DR G+  +H AA  G  +    +L+ + D  +    ED+ G   LHLAA +G+ RVV 
Sbjct: 67  --DRTGFAVIHDAARAGQLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
            +++H   +    +++G  A   A +  R            V+SL+      G T L 
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRN----------EVVSLMQANGAGGATNLQ 168

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
           +E   +AA+G +E +  +L+N  + + +   G T L    + N E              +
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
             DR G+  +H AA  G  +    +L+ + D  +    ED+ G   LHLAA +G+ RVV 
Sbjct: 67  --DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
            +++H   +    +++G  A   A +  R            V+SL+      G T L 
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRN----------EVVSLMQANGAGGATNLQ 168

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
           +E   +AA+G +E +  +L+N  + + +   G T L    + N E              +
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
             DR G+  +H AA  G  +    +L+ + D  +    ED+ G   LHLAA +G+ RVV 
Sbjct: 67  --DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRG 262
            +++H   +    +++G
Sbjct: 121 FLVKHTASNVGHRNHKG 137

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D HG++ LH A   G S +  M++     +I  + + DD   T LHLAAS G+  +V+++
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD---TPLHLAASHGHRDIVQKL 91
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
           +++     + V+  G    H+A    +  V + L+ N  ++S+    +K G  P+    A
Sbjct: 92  LQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKYGEMPVDKAKA 147
Query: 308 ACRD 311
             R+
Sbjct: 148 PLRE 151

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D HG++ LH A   G S +  M++     +I  + + DD   T LHLAAS G+  +V+++
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD---TPLHLAASHGHRDIVQKL 86
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
           +++     + V+  G    H+A    +  V + L+ N  ++S+    +K G  P+    A
Sbjct: 87  LQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKYGEMPVDKAKA 142
Query: 308 ACRD 311
             R+
Sbjct: 143 PLRE 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-28
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-27
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-26
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	3e-25
2rfa_A	232	Transient receptor potential cation channel subfa	3e-21
2rfa_A	232	Transient receptor potential cation channel subfa	3e-20
2rfa_A	232	Transient receptor potential cation channel subfa	5e-17
2pnn_A	273	Transient receptor potential cation channel subfa	7e-25
2pnn_A	273	Transient receptor potential cation channel subfa	9e-24
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	8e-15
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
2etb_A	256	Transient receptor potential cation channel subfam	1e-23
2etb_A	256	Transient receptor potential cation channel subfam	3e-19
2etb_A	256	Transient receptor potential cation channel subfam	6e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  122 bits (308), Expect = 2e-31
 Identities = 72/297 (24%), Positives = 110/297 (37%), Gaps = 65/297 (21%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ------VNDKGDTPLHV 79
                    T LH  +AS             G L +  +LL +       N K +TPLH+
Sbjct: 7   GGGGGESGLTPLH--VASFM-----------GHLPIVKNLLQRGASPNVSNVKVETPLHM 53

Query: 80  AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAAKGSV 137
           AA+  H  V + L+          ++          V    ++  T LH A   A  G  
Sbjct: 54  AARAGHTEVAKYLL----------QNKAK-------VNAKAKDDQTPLHCA---ARIGHT 93

Query: 138 EMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHH 197
            MV  +LEN  + +     G T LH A      + +  LLEK+        + G+T LH 
Sbjct: 94  NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHV 152

Query: 198 AAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSI 257
           AA  G   +  ++L+ +             G+T LH+A       +V+ ++     S   
Sbjct: 153 AAKYGKVRVAELLLERDAH----PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHS 207

Query: 258 VDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNGNTPLHVLAA 307
               G+   H A  + +    V +SLL+        +G         G TPLH LAA
Sbjct: 208 PAWNGYTPLHIA--AKQNQVEVARSLLQ--------YGGSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  117 bits (295), Expect = 1e-29
 Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 28/237 (11%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
              G TPLH+AAK     V   L+          + G             + +  T LH 
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLL----------QYGGS-------ANAESVQGVTPLHL 251

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A Q   +G  EMVA +L    + +     GLT LH         V  +L++   ++    
Sbjct: 252 AAQ---EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDAT 307

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
            R G+T LH A++ G+  +   +L+ + D       +   G + LH AA QG+  +V  +
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVN----AKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
           +++       V + G      A       V   L       S +   DK+  +    
Sbjct: 364 LKNGASPN-EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.8 bits (229), Expect = 8e-21
 Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 39/216 (18%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ---VNDK---GDTPLHV 79
            +  + +  T LH  +A+Q           EG  EM   LL +    N     G TPLH+
Sbjct: 238 ANAESVQGVTPLH--LAAQ-----------EGHAEMVALLLSKQANGNLGNKSGLTPLHL 284

Query: 80  AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEM 139
            A+  H  V +VLI          + GV      +        T LH A   +  G++++
Sbjct: 285 VAQEGHVPVADVLI----------KHGVM-----VDATTRMGYTPLHVA---SHYGNIKL 326

Query: 140 VAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA 199
           V  +L++    + +   G + LH A      D++ LLL+       E    G T L  A 
Sbjct: 327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAK 385

Query: 200 YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA 235
            LG+ ++T + LK   D+   +   D   M+     
Sbjct: 386 RLGYISVTDV-LKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 6e-14
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 50/199 (25%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ---VNDK---GDTPLHV 79
            ++      T LH  + +Q           EG + +   L+     V+     G TPLHV
Sbjct: 271 GNLGNKSGLTPLH--LVAQ-----------EGHVPVADVLIKHGVMVDATTRMGYTPLHV 317

Query: 80  AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAAKGSV 137
           A+   +  +V+ L+          +   D       V    +   + LH+A Q   +G  
Sbjct: 318 ASHYGNIKLVKFLL----------QHQAD-------VNAKTKLGYSPLHQAAQ---QGHT 357

Query: 138 EMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLE--KKKILTRERDRHGWTSL 195
           ++V  +L+N  S +    DG T L  A       V  +L     +       D+H  +  
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

Query: 196 HHAAYL-------GHSNIT 207
                +       G   I+
Sbjct: 418 ETVDEILDVSEDEGEELIS 436

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (290), Expect = 2e-30
 Identities = 49/242 (20%), Positives = 90/242 (37%), Gaps = 40/242 (16%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           +    +PLH AA+  H  +  +L+          ++G +     +   +E++ T L EA 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLV----------QAGAN-----IDTCSEDQRTPLMEA- 51

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR 189
             A    +E V  +++     D +  +G T LH A      +V++ LL   ++    +D 
Sbjct: 52  --AENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
            GWT +  A    H ++  ++L    D        D+     LH AA  G   +   ++ 
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGSDI----NIRDNEENICLHWAAFSGCVDIAEILLA 165

Query: 250 HCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNGNTPL 302
              +    V+  G +  H A  +       +   L                ++K G TPL
Sbjct: 166 AKCDL-HAVNIHGDSPLHIA--ARENRYDCVVLFLS--------RDSDVTLKNKEGETPL 214

Query: 303 HV 304
             
Sbjct: 215 QC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.6 bits (226), Expect = 2e-21
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           + +G T LH+AAK  H  VV+ L+           +G   +      +++   T +  A 
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLL----------SNGQMDVN----CQDDGGWTPMIWA- 118

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERD 188
                  V++V  +L      + R  +    LH A      D+ ++LL  K  +     +
Sbjct: 119 --TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL--HAVN 174

Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
            HG + LH AA     +   + L  + D       ++  G T L  A+         ++ 
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDV----TLKNKEGETPLQCASLNSQVWSALQMS 230

Query: 249 RH 250
           + 
Sbjct: 231 KA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.1 bits (217), Expect = 3e-20
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 32/201 (15%)

Query: 117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLL 176
           E++ K + LH A   A  G V++   +++   + D    D  T L  A   N  + +K L
Sbjct: 7   EHQNKRSPLHAA---AEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 177 LEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA 235
           ++    +    +D  G T LH AA  GH  +   +L +    +     +DD G T +  A
Sbjct: 64  IKAGALV--DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV---NCQDDGGWTPMIWA 118

Query: 236 ASQGYERVVRRIIRHCPESYSI--VDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLI 291
               +  +V+ ++        I   DN      H+A  +  G   + + LL         
Sbjct: 119 TEYKHVDLVKLLLSK---GSDINIRDNEENICLHWA--AFSGCVDIAEILLA-------- 165

Query: 292 HG-----RDKNGNTPLHVLAA 307
                   + +G++PLH +AA
Sbjct: 166 AKCDLHAVNIHGDSPLH-IAA 185

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.7 bits (159), Expect = 3e-12
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 17/131 (12%)

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
              ++  + LH AA  GH +I  M++++  +         +   T L  AA   +   V+
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANI----DTCSEDQRTPLMEAAENNHLEAVK 61

Query: 246 RIIRH--CPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHGRDKNGNTP 301
            +I+     +     D  G    H A  + +G   V++ LL N      ++ +D  G TP
Sbjct: 62  YLIKAGALVD---PKDAEGSTCLHLA--AKKGHYEVVQYLLSNG--QMDVNCQDDGGWTP 114

Query: 302 LHVLAAACRDS 312
           +    A     
Sbjct: 115 MIW--ATEYKH 123

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (291), Expect = 2e-29
 Identities = 54/308 (17%), Positives = 96/308 (31%), Gaps = 59/308 (19%)

Query: 20  IAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ---VNDK--GD 74
               ++ +    E    LH    +             G   +   +  +   + D     
Sbjct: 81  HTNLQIPTEPEPESPIKLH--TEAA------------GSYAITEPITRESVNIIDPRHNR 126

Query: 75  TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSA 132
           T LH  A        E LI    K+   + +G D       V   + ++NT L  A    
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKEC--IAAGAD-------VNAMDCDENTPLMLA---V 174

Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR--ERDRH 190
                 +VA +++             + LH A       ++  +L   K+     E DR+
Sbjct: 175 LARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 234

Query: 191 GWTSLHHAAYLGHSNITSM--MLKS-----EDDKIVALYKEDDRGMTALHLAASQGYERV 243
           G T+L   A+    +  +   +L       + D       E  +G TALH AA      +
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294

Query: 244 VRRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDK 296
           V+ ++     +    D  G      A  +  G   V+  L++         G      D 
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLA--AQEGRIEVVMYLIQ--------QGASVEAVDA 344

Query: 297 NGNTPLHV 304
             +T   +
Sbjct: 345 TDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  106 bits (267), Expect = 4e-26
 Identities = 38/263 (14%), Positives = 70/263 (26%), Gaps = 49/263 (18%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
                 P        +  + +      +  +                   E    LH   
Sbjct: 58  QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPT---------------EPEPESPIKLH--- 99

Query: 130 QSAAKGSVEMVAEILENCPSAD-HRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR--- 185
            + A GS  +   I     S +        T LH     ++ +  + L+  +        
Sbjct: 100 -TEAAGSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 186 ----ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
                 D    T L  A       + + ++K+  D        +    +ALH AA+    
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP----TIYNKSERSALHQAAANRDF 212

Query: 242 RVVRRIIRHCPESYSI--VDNRGWNARHFAMVSLRGG-----VLKSLLE-----NPYVIS 289
            ++  ++        I  +D  G  A      +   G       K L+E     +    +
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRNGMTALMIV--AHNEGRDQVASAKLLVEKGAKVDYDGAA 270

Query: 290 LIHGRDKNGNTPLHVLAAACRDS 312
                   G T LH   AA   +
Sbjct: 271 RKDSEKYKGRTALHY--AAQVSN 291

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  100 bits (252), Expect = 4e-24
 Identities = 58/260 (22%), Positives = 93/260 (35%), Gaps = 52/260 (20%)

Query: 32  EKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQV-------NDKGDTPLHVAAKCR 84
              TVLH    +       S E  E ++       +         +   +TPL +A   R
Sbjct: 124 HNRTVLH--WIASNS----SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR 177

Query: 85  HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAAKGSVEMVAE 142
              +V  L+          ++G D           N+ + +ALH+A   AA     M+  
Sbjct: 178 RRRLVAYLM----------KAGAD-------PTIYNKSERSALHQA---AANRDFGMMVY 217

Query: 143 ILENCPS-AD--HRGPDGLTTLHAAVICNAEDVI---KLLLEK-------KKILTRERDR 189
           +L +     D      +G+T L         D +   KLL+EK                 
Sbjct: 218 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 277

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
            G T+LH+AA + +  I   ++  +        K+D+ G T + LAA +G   VV  +I+
Sbjct: 278 KGRTALHYAAQVSNMPIVKYLVGEKGSNK---DKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334

Query: 250 HCPESYSIVDNRGWNARHFA 269
                   VD     AR  A
Sbjct: 335 QGASV-EAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 94.6 bits (236), Expect = 5e-22
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 28/191 (14%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           N    + LH AA  R   ++  ++          +   D       +E  +    TAL  
Sbjct: 196 NKSERSALHQAAANRDFGMMVYML-------NSTKLKGD-------IEELDRNGMTALMI 241

Query: 128 AVQSAAKGSVEMV-------AEI-LENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
              +  +  V          A++  +     D     G T LH A   +   ++K L+ +
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 180 KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG 239
           K     ++D  G T +  AA  G   +   +++            D    TA  LA +  
Sbjct: 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV----EAVDATDHTARQLAQANN 357

Query: 240 YERVVRRIIRH 250
           +  +V    R 
Sbjct: 358 HHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 30/203 (14%), Positives = 50/203 (24%), Gaps = 52/203 (25%)

Query: 112 WMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAED 171
           WM  +ENEEKN   H+++                              +L  A       
Sbjct: 17  WMPPMENEEKNRKNHQSIT-------------------------SSQHSLLEASYDGYIK 51

Query: 172 VIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTA 231
             +  L            +           G+  +      +         + +      
Sbjct: 52  RQRNEL----------QHYSLYPNPQGYGNGNDFLGDFNHTNLQIP----TEPEPESPIK 97

Query: 232 LHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVIS 289
           LH  A  G   +   I R       I         H+   +        + L+ +     
Sbjct: 98  LHTEA-AGSYAITEPITRE--SVNIIDPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKEC 152

Query: 290 LIHG-----RDKNGNTPLHVLAA 307
           +  G      D + NTPL  LA 
Sbjct: 153 IAAGADVNAMDCDENTPLM-LAV 174

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  112 bits (282), Expect = 3e-29
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 42/247 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           ++ GDTPLH+A    +   V  L+      +   + G +       ++  N  + T LH 
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLV------NLFQQGGRE-------LDIYNNLRQTPLHL 52

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR-- 185
           A          +V  ++    S       G T  H A    +   ++ LL+     T   
Sbjct: 53  A---VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109

Query: 186 -ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVV 244
             R+  G T+LH A          ++L+   D       +   G + L  A       +V
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDA---VDIKSGRSPLIHAVENNSLSMV 166

Query: 245 RRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKN 297
           + +++H     +     G +A H A  S RG   ++++L+          G     ++ +
Sbjct: 167 QLLLQHGANV-NAQMYSGSSALHSA--SGRGLLPLVRTLVR--------SGADSSLKNCH 215

Query: 298 GNTPLHV 304
            +TPL V
Sbjct: 216 NDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (257), Expect = 9e-26
 Identities = 55/268 (20%), Positives = 100/268 (37%), Gaps = 38/268 (14%)

Query: 25  LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDK---GDTPLHVAA 81
           + + A  + +T LH  IA  Q     +   V  ++ +      +++       TPLH+A 
Sbjct: 1   MATRADEDGDTPLH--IAVVQG----NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 54

Query: 82  KCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVA 141
               P+VV +L+           +G        +  +    TA H A       S     
Sbjct: 55  ITTLPSVVRLLV----------TAGAS-----PMALDRHGQTAAHLA---CEHRSPT-CL 95

Query: 142 EIL-----ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLH 196
             L           + R  DGLT LH AV    ++ ++LLLE+   +     + G + L 
Sbjct: 96  RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 155

Query: 197 HAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYS 256
           HA      ++  ++L+   +       +   G +ALH A+ +G   +VR ++R   +S S
Sbjct: 156 HAVENNSLSMVQLLLQHGANV----NAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-S 210

Query: 257 IVDNRGWNARHFAMVSLRGGVLKSLLEN 284
           + +         A       +L+     
Sbjct: 211 LKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 39/127 (30%)

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
             D  G T LH A   G+      ++         L   ++   T LHLA       VVR
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL 305
            ++             G +                              D++G T  H+ 
Sbjct: 64  LLVTA-----------GAS--------------------------PMALDRHGQTAAHL- 85

Query: 306 AAACRDS 312
            A    S
Sbjct: 86  -ACEHRS 91

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (277), Expect = 3e-28
 Identities = 46/258 (17%), Positives = 76/258 (29%), Gaps = 53/258 (20%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           ND G T LH+AA     + VE L            +G       +LV     +TALH A 
Sbjct: 42  NDLGQTALHLAAILGEASTVEKLY----------AAGAG-----VLVAERGGHTALHLA- 85

Query: 130 QSAAKGSVEMVAEILEN-------------CPSADHRGPDGLTTLHAAVICNAEDVIKLL 176
                 +      +L+                S D                N E+  +  
Sbjct: 86  --CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 177 LEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA 236
            E  ++     +  G T LH A     + +  ++  +  D +     E   G T LHLA 
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNK--PEPTCGRTPLHLAV 200

Query: 237 SQGYERVVRRIIRH--CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG- 293
                 V+  +++    P         G      A++     + + L          HG 
Sbjct: 201 EAQAASVLELLLKAGADPT---ARMYGGRTPLGSALLRPNPILARLLRA--------HGA 249

Query: 294 ----RDKNGNTPLHVLAA 307
                  +  +P    + 
Sbjct: 250 PEPEDGGDKLSPCS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (275), Expect = 6e-28
 Identities = 51/258 (19%), Positives = 76/258 (29%), Gaps = 48/258 (18%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
           V + GDT LH+A   +H   ++ L+                    L ++N+   TALH A
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLL----------GFSAGHEY--LDLQNDLGQTALHLA 52

Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK--------K 180
              A  G    V ++             G T LH A    A     +LL+          
Sbjct: 53  ---AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

Query: 181 KILTRER----DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA 236
                +                +     N      +    ++ A   E+  G T LH+A 
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAV 166

Query: 237 SQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG- 293
                 +VR +     +        G    H A         VL+ LL+         G 
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA--VEAQAASVLELLLK--------AGA 216

Query: 294 ----RDKNGNTPLHVLAA 307
               R   G TPL   A 
Sbjct: 217 DPTARMYGGRTPLG-SAL 233

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 23/176 (13%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
            D    P  V ++       E             +  +      L  EN + +T LH A 
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRD---------EDWRLQ-----LEAENYDGHTPLHVA- 165

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPD-GLTTLHAAVICNAEDVIKLLLEKKKILTRERD 188
                   EMV  + +     +   P  G T LH AV   A  V++LLL+        R 
Sbjct: 166 --VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARM 222

Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVV 244
             G T L  A    +  +  ++            ++    ++    + S       
Sbjct: 223 YGGRTPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 22/111 (19%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
              G TPLH+A + +  +V+E+L+          ++G D                T L  
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLL----------KAGAD-------PTARMYGGRTPLGS 231

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLE 178
           A     + +  +   +  +       G D L+   ++   +  D      E
Sbjct: 232 A---LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  110 bits (277), Expect = 3e-28
 Identities = 64/303 (21%), Positives = 102/303 (33%), Gaps = 66/303 (21%)

Query: 29  ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ---VNDK----GDTPLHVAA 81
           A  E N +L    A Q              +++   LL     VN +    G TPLH A 
Sbjct: 1   AAVEDNHLLI--KAVQ-----------NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV 47

Query: 82  KCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAAKGSVEM 139
           +     +VE+L+            G D            +   T    A   A  GSV++
Sbjct: 48  QMSREDIVELLL----------RHGAD-------PVLRKKNGATPFLLA---AIAGSVKL 87

Query: 140 VAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLE---------KKKILTRERDRH 190
           +   L      +     G T    A +      +K L +         K K       + 
Sbjct: 88  LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147

Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG----YERVVRR 246
           G T+L  AA  GH  +  ++L      +      D+ G  AL  A         E +   
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHGRDKNGNTPLHV 304
           ++ H  +  ++   RG      A    +   G+++ LLE  ++   I+  D +G T L  
Sbjct: 205 LLDHGAD-VNVRGERGKTPLILA--VEKKHLGLVQRLLEQEHIE--INDTDSDGKTALL- 258

Query: 305 LAA 307
           LA 
Sbjct: 259 LAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 91.8 bits (229), Expect = 2e-21
 Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 23/189 (12%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
           +  G T    AA       ++ L K  A    R         +       +   TAL +A
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR------RKTKEDQERLRKGGATALMDA 155

Query: 129 VQSAAKGSVEMVAEILENCPSAD--HRGPDGLTTLHAAVICN----AEDVIKLLLEKK-K 181
              A KG VE++ +IL +   AD       G   L  A++ +     E +  LLL+    
Sbjct: 156 ---AEKGHVEVL-KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 182 ILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
           +    R   G T L  A    H  +   +L+ E  +I      D  G TAL LA     +
Sbjct: 212 V--NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND---TDSDGKTALLLAVELKLK 266

Query: 242 RVVRRIIRH 250
           ++   + + 
Sbjct: 267 KIAELLCKR 275

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  111 bits (281), Expect = 3e-28
 Identities = 55/267 (20%), Positives = 89/267 (33%), Gaps = 62/267 (23%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           + +  TPLH+AA      +V++L+          + G D       V   ++     LH 
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLL----------QHGAD-------VHAKDKGGLVPLHN 97

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A    + G  E+   +L++    +       T LH A   N  +V  LLL      T   
Sbjct: 98  A---CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LV 153

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLK---------SEDDKIVALY--------KEDDRGMT 230
           + HG +++  A         +   K           D   V           K+     T
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213

Query: 231 ALHLAASQGYER---VVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENP 285
           ALH A +  + +   V   ++R      +  +       H A  + R    V++ L +  
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVA--AERAHNDVMEVLHK-- 268

Query: 286 YVISLIHG-----RDKNGNTPLHVLAA 307
                 HG      D  G T LH  AA
Sbjct: 269 ------HGAKMNALDSLGQTALH-RAA 288

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.2 bits (243), Expect = 5e-23
 Identities = 45/251 (17%), Positives = 80/251 (31%), Gaps = 45/251 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
             K D  L  A       ++ +L              V+           +  K+T LH 
Sbjct: 22  EYKKDELLEAARSGNEEKLMALLTPL----------NVN-------CHASDGRKSTPLHL 64

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRE 186
           A   A    V +V  +L++      +   GL  LH A      +V +LLL+    +    
Sbjct: 65  A---AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV--NA 119

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
            D   +T LH AA      + S++L    D        +  G +A+ +A +      +  
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGAD----PTLVNCHGKSAVDMAPTPELRERLT- 174

Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
                       + +G +    A  +    V K+L            + ++  T LH   
Sbjct: 175 -----------YEFKGHSLLQAAREADLAKVKKTLALEIINFK----QPQSHETALHCAV 219

Query: 307 AACRDSSYFIV 317
           A+       + 
Sbjct: 220 ASLHPKRKQVA 230

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.2 bits (243), Expect = 6e-23
 Identities = 56/298 (18%), Positives = 101/298 (33%), Gaps = 79/298 (26%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ-------VNDKGDTPLH 78
           V+     + T LH   A+            +  +E+C SLLL        VN  G + + 
Sbjct: 117 VNAMDLWQFTPLH--EAAS-----------KNRVEVC-SLLLSHGADPTLVNCHGKSAVD 162

Query: 79  VAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVE 138
           +A        +    K                           ++ L     +A +  + 
Sbjct: 163 MAPTPELRERLTYEFK--------------------------GHSLLQ----AAREADLA 192

Query: 139 MVAEILENCPSADHRGPDGLTTLHAAVIC---NAEDVIKLLLEKK-KILTRERDRHGWTS 194
            V + L        +     T LH AV       + V +LLL K   +   E+++   T 
Sbjct: 193 KVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV--NEKNKDFMTP 250

Query: 195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES 254
           LH AA   H+++  ++ K        +   D  G TALH AA  G+ +  R ++ +  + 
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAK----MNALDSLGQTALHRAALAGHLQTCRLLLSYGSD- 305

Query: 255 YSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG---RDKNGNTPLHVLAAAC 309
            SI+  +G+ A      +++       +       L      R  + +  L   A+  
Sbjct: 306 PSIISLQGFTAAQMGNEAVQ------QI-------LSESTPMRTSDVDYRLL-EASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.2 bits (199), Expect = 5e-17
 Identities = 43/226 (19%), Positives = 77/226 (34%), Gaps = 32/226 (14%)

Query: 138 EMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVIKLLLEKKKILTRERDRHGWTSLH 196
           +   ++ +    A   G      L  AA   N E ++ LL     +     D    T LH
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT-PLNVNCHASDGRKSTPLH 63

Query: 197 HAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYS 256
            AA      I  ++L+   D    ++ +D  G+  LH A S G+  V   +++H     +
Sbjct: 64  LAAGYNRVRIVQLLLQHGAD----VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-N 118

Query: 257 IVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG-----RDKNGNTPLHVLAAACRD 311
            +D   +   H A    R  V   LL         HG      + +G + + +  A   +
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLS--------HGADPTLVNCHGKSAVDM--APTPE 168

Query: 312 SSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLIINVII 357
                    +      K ++ +    R     L  +   L + +I 
Sbjct: 169 L-------RERLTYEFKGHSLL-QAAREAD--LAKVKKTLALEIIN 204

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.4 bits (158), Expect = 9e-12
 Identities = 43/178 (24%), Positives = 58/178 (32%), Gaps = 48/178 (26%)

Query: 34  NTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ----VNDK---GDTPLHVAAKCRHP 86
            T LH   A          +  E        LLL+    VN+K     TPLHVAA+  H 
Sbjct: 212 ETALH--CAVA-SLHPKRKQVAE--------LLLRKGANVNEKNKDFMTPLHVAAERAHN 260

Query: 87  AVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAAKGSVEMVAEIL 144
            V+EVL           + G         +   +    TALH A   A  G ++    +L
Sbjct: 261 DVMEVLH----------KHGAK-------MNALDSLGQTALHRA---ALAGHLQTCRLLL 300

Query: 145 ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG 202
                       G T          E V ++L E   +  R  D      L  A+  G
Sbjct: 301 SYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM--RTSDVDY--RLLEASKAG 350

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  107 bits (270), Expect = 8e-28
 Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 31/232 (13%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
           G   +  A     P   + L               D     ++   +  +T   +     
Sbjct: 12  GQVKVFRALYTFEPRTPDELYI----------EEGD-----IIYITDMSDTNWWKG---T 53

Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGW 192
           +KG   ++            +       LH A        ++  L+ +  +    D+ G 
Sbjct: 54  SKGRTGLIPSNYVAE-----QAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGS 107

Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCP 252
           T+L+ A + GH +I  M+    + ++     ++  G TALH AA +GY  +V+ ++    
Sbjct: 108 TALYWACHGGHKDIVEMLFTQPNIELNQ---QNKLGDTALHAAAWKGYADIVQLLLAKGA 164

Query: 253 ESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
            +  + +     A   A  +    +LK       V +L    +         
Sbjct: 165 RT-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS---NAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  102 bits (257), Expect = 5e-26
 Identities = 31/201 (15%), Positives = 72/201 (35%), Gaps = 28/201 (13%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
           + D  DT            ++       +                     E  +  LHEA
Sbjct: 41  ITDMSDTNWWKGTSKGRTGLIPSNYVAEQ--------------------AESIDNPLHEA 80

Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERD 188
              A +G++  + E L+N    +     G T L+ A     +D++++L  +  I   +++
Sbjct: 81  ---AKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137

Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
           + G T+LH AA+ G+++I  ++L             +     A  +A +     ++++  
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGAR----TDLRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 249 RHCPESYSIVDNRGWNARHFA 269
                  ++ +   +     +
Sbjct: 194 GTDAVR-TLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 87.7 bits (218), Expect = 2e-20
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 56  EGILEMCPSLLLQVNDK-GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWML 114
           +G   + PS  +    +  D PLH AAK  + + +   +          ++ V      +
Sbjct: 55  KGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECL----------DNRVG-----V 99

Query: 115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD--HRGPDGLTTLHAAVICNAEDV 172
              ++  +TAL+ A      G  + + E+L   P+ +   +   G T LHAA      D+
Sbjct: 100 NGLDKAGSTALYWA---CHGGHKD-IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADI 155

Query: 173 IKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
           ++LLL K       R+     +   A     +++      ++  + ++    +       
Sbjct: 156 VQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS----NAEDYLDD 210

Query: 233 HLAASQG 239
             +  + 
Sbjct: 211 EDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 43/206 (20%)

Query: 5   LYRDAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPS 64
            ++  +KG       +     V+      +  LH   A+++     +  ++         
Sbjct: 49  WWKGTSKGRTG----LIPSNYVAEQAESIDNPLH--EAAKRG----NLSWLR-------- 90

Query: 65  LLLQ----VNDK---GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE 117
             L     VN     G T L+ A    H  +VE+L           +  ++     L  +
Sbjct: 91  ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT---------QPNIE-----LNQQ 136

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
           N+  +TALH A   A KG  ++V  +L      D R  +       A       ++K   
Sbjct: 137 NKLGDTALHAA---AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 178 EKKKILTRERDRHGWTSLHHAAYLGH 203
               + T   +   +     +    H
Sbjct: 194 GTDAVRT-LSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.6 bits (184), Expect = 9e-16
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 18/154 (11%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED 215
            G   +  A+          L  ++  +         T+       G + +         
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKGRTGLI-------- 61

Query: 216 DKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG 275
                + ++ +     LH AA +G    +R  + +     + +D  G  A ++A     G
Sbjct: 62  -PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWA--CHGG 117

Query: 276 --GVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
              +++ L   P +   ++ ++K G+T LH  AA
Sbjct: 118 HKDIVEMLFTQPNI--ELNQQNKLGDTALH-AAA 148

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 18/124 (14%)

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
           +  + G   +  A Y         +   E D I       D   T      S+G   ++ 
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDII----YITDMSDTNWWKGTSKGRTGLIP 62

Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHGRDKNGNTPLH 303
                             N  H A  + RG    L+  L+N      ++G DK G+T L+
Sbjct: 63  SNYVA------EQAESIDNPLHEA--AKRGNLSWLRECLDNR---VGVNGLDKAGSTALY 111

Query: 304 VLAA 307
             A 
Sbjct: 112 -WAC 114

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 11/93 (11%)

Query: 220 ALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLK 279
              K    G   +  A      R    +     +    + +             R G++ 
Sbjct: 4   PPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIP 62

Query: 280 SLLENPYVISLIHGRDKNGNTPLHVLAAACRDS 312
           S          +  + ++ + PLH   AA R +
Sbjct: 63  SN--------YVAEQAESIDNPLHE--AAKRGN 85

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  107 bits (269), Expect = 2e-27
 Identities = 47/243 (19%), Positives = 80/243 (32%), Gaps = 41/243 (16%)

Query: 73  GDTPLHVAAKCRH-PAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS 131
            + PLH A        V E+L                     LL ++++    LH +   
Sbjct: 2   SNYPLHQACMENEFFKVQELLH----------SKPSL-----LLQKDQDGRIPLHWS--- 43

Query: 132 AAKGSVEMVAEIL----ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRE 186
            +  + E +   L    EN    D+    G T  H A      +V+K L ++  K    +
Sbjct: 44  VSFQAHE-ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
               G T LH A       ++  ++++          +D      LH AAS G  +++  
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASV----RIKDKFNQIPLHRAASVGSLKLIEL 158

Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG-----RDKNGNTP 301
           +      + +  D +GW     A+    G     L+E        +G      D  G   
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK-------YGAEYDLVDNKGAKA 211

Query: 302 LHV 304
             V
Sbjct: 212 EDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  104 bits (262), Expect = 2e-26
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 26/218 (11%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           +  G  PLH +   +   +   L+              + +      ++    T  H A 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLS----------KMEN-VNLDDYPDDSGW-TPFHIA- 79

Query: 130 QSAAKGSVEMVAEILENCPSAD--HRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRE 186
              + G++E+V  + +     D       G+T LH AV     +V + L+E    +  R 
Sbjct: 80  --CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV--RI 135

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
           +D+     LH AA +G   +  ++       +     +D +G T L  A ++G+      
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAV---NWQDKQGWTPLFHALAEGHGDAAVL 192

Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
           ++      Y +VDN+G  A   A+      V K  L N
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  107 bits (270), Expect = 2e-27
 Identities = 59/266 (22%), Positives = 89/266 (33%), Gaps = 60/266 (22%)

Query: 70  NDKGDTPLHVAAKC-------------RHPAVVEVLIKFAKKQSRELESGVDWIRWMLLV 116
              G TPL +A+                 PAV+   I            G         +
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI----------YQGAS-------L 49

Query: 117 ENEEKN---TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVI 173
            N+      TALH A   A     +    +LE    A+ +   G T LHAAV  +A+ V 
Sbjct: 50  HNQTDRTGETALHLA---ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 106

Query: 174 KLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH 233
           ++L+  +      R   G T L  AA L    +   ++ S  D    +   DD G +ALH
Sbjct: 107 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALH 162

Query: 234 LAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLI 291
            AA+         ++++      + +NR       A  +  G     K LL+        
Sbjct: 163 WAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLA--AREGSYETAKVLLD-------- 211

Query: 292 HG-----RDKNGNTPLHVLAAACRDS 312
           H       D     P  +  A  R  
Sbjct: 212 HFANRDITDHMDRLPRDI--AQERMH 235

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 53/255 (20%), Positives = 90/255 (35%), Gaps = 54/255 (21%)

Query: 34  NTVLHVNIASQQEGERVSTEFV--EGILEMCPSLLLQ-------VNDKGDTPLHVAAKCR 84
            T L   IAS   G   +      E    +    + Q        +  G+T LH+AA+  
Sbjct: 11  FTPLM--IASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68

Query: 85  HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAAKGSVEMVAE 142
                + L+          E+  D           +    T LH A    +  +   V +
Sbjct: 69  RSDAAKRLL----------EASAD-------ANIQDNMGRTPLHAA---VSADAQG-VFQ 107

Query: 143 ILENCPSADHRGPD-------GLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTS 194
           IL       +R  D       G T L  A     E +++ L+     +     D  G ++
Sbjct: 108 IL-----IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--NAVDDLGKSA 160

Query: 195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES 254
           LH AA + + +   ++LK+  +K      +++R  T L LAA +G     + ++ H    
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANK----DMQNNREETPLFLAAREGSYETAKVLLDHFAN- 215

Query: 255 YSIVDNRGWNARHFA 269
             I D+     R  A
Sbjct: 216 RDITDHMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.4 bits (210), Expect = 4e-19
 Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 24/182 (13%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           ++ G TPLH A       V ++LI   + ++ +L++              +  T L  A 
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILI---RNRATDLDAR-----------MHDGTTPLILA- 131

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERD 188
             A      M+ +++ +    +     G + LH A   N  D   +LL+         ++
Sbjct: 132 --ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK--DMQN 187

Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
               T L  AA  G      ++L    +        D        +A  + +  +VR + 
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRLLD 243

Query: 249 RH 250
             
Sbjct: 244 LE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.8 bits (198), Expect = 2e-17
 Identities = 45/178 (25%), Positives = 67/178 (37%), Gaps = 35/178 (19%)

Query: 151 DHRGPDGLTTLHAAVIC-------------NAEDVIKLLLEKKKILTRERDRHGWTSLHH 197
           + RGPDG T L  A                +A  VI   + +   L  + DR G T+LH 
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 198 AAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSI 257
           AA    S+    +L++  D       +D+ G T LH A S   + V + +IR+       
Sbjct: 64  AARYSRSDAAKRLLEASADA----NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 258 VDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNGNTPLHVLAAA 308
             + G      A  +     G+L+ L+                 D  G + LH  AAA
Sbjct: 120 RMHDGTTPLILA--ARLAVEGMLEDLIN--------SHADVNAVDDLGKSALH-WAAA 166

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  107 bits (269), Expect = 5e-27
 Identities = 41/248 (16%), Positives = 81/248 (32%), Gaps = 50/248 (20%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
                +P+H AA   H   +  LI            G         V     +  + LHE
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLI----------SQGWA-------VNIITADHVSPLHE 98

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRE 186
           A      G +  V  +L++    +    D  T L  A +  + D + LLL+    +   +
Sbjct: 99  A---CLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV---Q 152

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
            +    + +H AA  GH    + ++    +    +  +     T L+LA        V++
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYGGN----IDHKISHLGTPLYLACENQQRACVKK 208

Query: 247 IIRHCPESYSIV--DNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG-----RDKNGN 299
           ++    +    V       +  H  + +    +   L++         G     ++  G 
Sbjct: 209 LLESGAD----VNQGKGQDSPLHAVVRTASEELACLLMD--------FGADTQAKNAEGK 256

Query: 300 TPLHVLAA 307
            P+  L  
Sbjct: 257 RPVE-LVP 263

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  100 bits (251), Expect = 2e-24
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHE 127
                TPL  A        V +L+          + G   +         E +  + +HE
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLL----------QHGAS-V-------QPESDLASPIHE 163

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRE 186
           A   A +G VE V  ++    + DH+     T L+ A        +K LLE    +    
Sbjct: 164 A---ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV---N 217

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVV 244
           + +   + LH         +  +++    D       ++  G   + L   +     +
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGAD----TQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 98.7 bits (247), Expect = 5e-24
 Identities = 38/268 (14%), Positives = 85/268 (31%), Gaps = 49/268 (18%)

Query: 56  EGILEMCPSLLLQ---VN--DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWI 110
                    L+ +   +   D     +  +          + +         L + +   
Sbjct: 5   HHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRL---------LSNPLM-- 53

Query: 111 RWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAE 170
                 +     + +HEA   A  G    +  ++    + +    D ++ LH A +    
Sbjct: 54  -----GDAVSDWSPMHEA---AIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHL 105

Query: 171 DVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT 230
             +K+LL+    +         T L +A   G  +  +++L+          + +    +
Sbjct: 106 SCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASV-----QPESDLAS 159

Query: 231 ALHLAASQGYERVVRRIIRH--CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVI 288
            +H AA +G+   V  +I +    +      +      + A  + +   +K LLE     
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNID---HKISHLGTPLYLACENQQRACVKKLLE----- 211

Query: 289 SLIHG----RDKNGNTPLHVLAAACRDS 312
               G    + K  ++PLH  A     S
Sbjct: 212 ---SGADVNQGKGQDSPLH--AVVRTAS 234

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.0 bits (240), Expect = 5e-23
 Identities = 34/219 (15%), Positives = 67/219 (30%), Gaps = 34/219 (15%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALH 126
           +     +PLH A    H + V++L+          + G         V     + +T L 
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILL----------KHGAQ-------VNGVTADWHTPLF 130

Query: 127 EAVQSAAKGSVEMVAEILENCPSAD-HRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR 185
            A      GS + V  +L++   A      D  + +H A      + +  L+     +  
Sbjct: 131 NA---CVSGSWDCVNLLLQH--GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNID- 184

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
            +  H  T L+ A           +L+S  D       +     + LH       E +  
Sbjct: 185 HKISHLGTPLYLACENQQRACVKKLLESGADV-----NQGKGQDSPLHAVVRTASEELAC 239

Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
            ++    ++    +  G              + +  LE 
Sbjct: 240 LLMDFGADTQ-AKNAEGKRPVELV--PPESPLAQLFLER 275

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  108 bits (273), Expect = 5e-27
 Identities = 42/307 (13%), Positives = 92/307 (29%), Gaps = 65/307 (21%)

Query: 19  EIAKDELVS----IATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQV-NDKG 73
           + AK  L S     +       +H  +A         T+ V          L++   ++G
Sbjct: 67  DTAK-YLASVGEVHSLWHGQKPIH--LAVMAN----KTDLVV--------ALVEGAKERG 111

Query: 74  DTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAA 133
             P  +  +C    V E+                        V++ +  TALH  V    
Sbjct: 112 QMPESLLNECDEREVNEIGSH---------------------VKHCKGQTALHWCVGLG- 149

Query: 134 KGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR----ERDR 189
              +EM+  +++   S   +     T L  A+     + + L+++     +       ++
Sbjct: 150 PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
            G + LH A  +   ++    ++   D    +  ED+     L+L+       + + +++
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGID----VNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265

Query: 250 HCPESYSI------------VDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKN 297
                                     +    A    +  VL+ L E    +  +      
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK---LDEVVRSLNT 322

Query: 298 GNTPLHV 304
           G      
Sbjct: 323 GAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  106 bits (267), Expect = 3e-26
 Identities = 43/306 (14%), Positives = 91/306 (29%), Gaps = 61/306 (19%)

Query: 19  EIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDK-GDTPL 77
           ++    LV  A           + ++ +      E  E        +   V    G T L
Sbjct: 98  DLVV-ALVEGAKERGQMPES--LLNECD----EREVNE--------IGSHVKHCKGQTAL 142

Query: 78  HVAAKC--RHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAA 133
           H        +  ++++L+          + G             ++   T L  A++   
Sbjct: 143 HWCVGLGPEYLEMIKILV----------QLGAS-------PTAKDKADETPLMRAME--- 182

Query: 134 KGSVEMVAEILENCPSA-----DHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRER 187
             + E +  +++  PS      D+    G + LH A++ N EDV    +E    +     
Sbjct: 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV--NME 240

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYK---------EDDRGMTALHLAASQ 238
           D      L+ +       +T  +L+  D  ++             +    +  +  AA  
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 239 GYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNG 298
             + V++ +     E      N G              V +  L      + +  R ++ 
Sbjct: 301 SKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS---APVRTRSRSR 356

Query: 299 NTPLHV 304
                V
Sbjct: 357 ARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  105 bits (264), Expect = 8e-26
 Identities = 39/255 (15%), Positives = 70/255 (27%), Gaps = 69/255 (27%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           N  G T LH+A K       + L             G                  +H A 
Sbjct: 50  NRFGCTALHLACKFGCVDTAKYLA----------SVGEV-------HSLWHGQKPIHLA- 91

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR 189
                   ++V  ++E     +     G         C+  +V ++    K         
Sbjct: 92  --VMANKTDLVVALVEGA--KE----RGQMPESLLNECDEREVNEIGSHVK-------HC 136

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVAL--------YKEDDRGMTALHLAASQGYE 241
            G T+LH    LG   +          +++ +          +D    T L  A      
Sbjct: 137 KGQTALHWCVGLGPEYL----------EMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 242 RVVRRIIRHCPESYS----IVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG---- 293
             +  ++   P   S      + +G +  H+A++     V    +E         G    
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE--------MGIDVN 238

Query: 294 -RDKNGNTPLHVLAA 307
             D     PL+ L+ 
Sbjct: 239 MEDNEHTVPLY-LSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.8 bits (247), Expect = 2e-23
 Identities = 25/212 (11%), Positives = 62/212 (29%), Gaps = 30/212 (14%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           +   +TPL  A + R+   +++++     +S      +      L   N++ N+ LH A 
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKS-----SLR-----LDYANKQGNSHLHWA- 218

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR---- 185
                   ++    +E     +    +    L+ +V      + K LL+K  +       
Sbjct: 219 --ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276

Query: 186 --------ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
                            +  AA      +  ++ +  D+    + +  + G         
Sbjct: 277 YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE----VVRSLNTGAGGAVKRKK 332

Query: 238 QGYERVVRRIIRHCPESYSIVDNRGWNARHFA 269
           +    V R  +                +   +
Sbjct: 333 KAAPAVKRMKLAPSAPV-RTRSRSRARSSAVS 363

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  106 bits (266), Expect = 2e-26
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 53/257 (20%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           N  G T LH A    +  +V+ L+          E+G +       +   + E    LH 
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLV----------ENGAN-------INQPDNEGWIPLHA 112

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A   A+ G +++   ++           +G T L  A     E++++  + ++ +     
Sbjct: 113 A---ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV----- 164

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
                 +      +   +     L S     V        G TALH+AA++GY  V++ +
Sbjct: 165 --DIEAARKEEERIMLRDAR-QWLNSGHINDVR---HAKSGGTALHVAAAKGYTEVLKLL 218

Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNGNT 300
           I+   +  +I D  GW   H A  +  G     + L+E        +       +K G T
Sbjct: 219 IQARYD-VNIKDYDGWTPLHAA--AHWGKEEACRILVE--------NLCDMEAVNKVGQT 267

Query: 301 PLHVLAAACRDSSYFIV 317
              V  A      Y   
Sbjct: 268 AFDV--ADEDILGYLEE 282

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  103 bits (259), Expect = 2e-25
 Identities = 46/240 (19%), Positives = 78/240 (32%), Gaps = 35/240 (14%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           + K      +         +E  +                 +        +       A 
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPV----------VKRKK-TK-----VKFDDGAVFLAA- 47

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR 189
              + G  E V  +LE     ++   DGLT LH A I +  D++K L+E    +  + D 
Sbjct: 48  --CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDN 104

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
            GW  LH AA  G+ +I   ++         +   +  G T L +A  +  E +++  + 
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELLQNEV- 159

Query: 250 HCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC 309
                 +        AR      +     + L              K+G T LHV AAA 
Sbjct: 160 ------NRQGVDIEAARKEEERIMLRDARQWLNSGHI---NDVRHAKSGGTALHV-AAAK 209

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 82.9 bits (206), Expect = 3e-18
 Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 50/232 (21%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ-------VNDKGDTPLH 78
           ++   +E    LH   A+   G     +  E         L+        VN +GDTPL 
Sbjct: 99  INQPDNEGWIPLH--AAAS-CG---YLDIAE--------YLISQGAHVGAVNSEGDTPLD 144

Query: 79  VAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVE 138
           +A +     +++  +            GVD               A  E  +       +
Sbjct: 145 IAEEEAMEELLQNEVN---------RQGVD------------IEAARKEEER---IMLRD 180

Query: 139 MVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHA 198
               +     +       G T LH A      +V+KLL++  +     +D  GWT LH A
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAA 239

Query: 199 AYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
           A+ G      +++++  D    +   +  G TA  +A       +     + 
Sbjct: 240 AHWGKEEACRILVENLCD----MEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 34/192 (17%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRH 85
           V     E +T L   IA +           E + E+  + + +     +       +   
Sbjct: 132 VGAVNSEGDTPLD--IAEE-----------EAMEELLQNEVNRQGVDIEAARKEEERIML 178

Query: 86  PAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILE 145
               + L              ++      +   +   TALH A   AAKG  E++  +++
Sbjct: 179 RDARQWLN----------SGHIN-----DVRHAKSGGTALHVA---AAKGYTEVLKLLIQ 220

Query: 146 NCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHAAYLGHS 204
                + +  DG T LHAA     E+  ++L+E    +     ++ G T+   A      
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM--EAVNKVGQTAFDVADEDILG 278

Query: 205 NITSMMLKSEDD 216
            +  +  K    
Sbjct: 279 YLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.1 bits (126), Expect = 8e-08
 Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 28/134 (20%)

Query: 185 RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVV 244
           +  D     +     ++G           +  K     K           A S G    V
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLE-PPVVKRKKT----KVKFDDGAVFLAACSSGDTEEV 56

Query: 245 RRIIRH--CPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RD 295
            R++            +  G  A H A   +     ++K L+E        +G      D
Sbjct: 57  LRLLERGADIN---YANVDGLTALHQA--CIDDNVDMVKFLVE--------NGANINQPD 103

Query: 296 KNGNTPLHVLAAAC 309
             G  PLH  AA+C
Sbjct: 104 NEGWIPLHA-AASC 116

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 22/101 (21%)

Query: 224 EDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSL 281
            D +      L    G E  +   +    ++  +  + G      A     G    +  L
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKT-KVKFDDGAVF-LAA--CSSGDTEEVLRL 59

Query: 282 LENPYVISLIHG-----RDKNGNTPLHVLAAACRDSSYFIV 317
           LE         G      + +G T LH    AC D +  +V
Sbjct: 60  LE--------RGADINYANVDGLTALHQ---ACIDDNVDMV 89

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  101 bits (255), Expect = 4e-26
 Identities = 40/179 (22%), Positives = 62/179 (34%), Gaps = 24/179 (13%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
               +H  A       ++  +            G + +       +E   T L  A   +
Sbjct: 2   DSLSIHQLAAQGELDQLKEHL----------RKGDNLVN----KPDERGFTPLIWA---S 44

Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHG 191
           A G +E V  +LE          +  + L  A      D++ LLLE+   I     D +G
Sbjct: 45  AFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI--NIYDWNG 102

Query: 192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
            T L +A    H      +L    D       E D G T + LA + GY +V + I  H
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADL----TTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.8 bits (198), Expect = 4e-18
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 22/155 (14%)

Query: 157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD 216
              ++H        D +K  L K   L  + D  G+T L  A+  G       +L+   D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 217 KIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG- 275
             +          +AL LA++ GY  +V  ++    +  +I D  G     +A       
Sbjct: 62  PHIL----AKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYA--VRGNH 114

Query: 276 -GVLKSLLENPYVISLIHG-----RDKNGNTPLHV 304
              +++LL          G        +G TP+ +
Sbjct: 115 VKCVEALLA--------RGADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 27/163 (16%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           +++G TPL  A+       V  L+          E G D            +E+ +AL  
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLL----------EWGAD-------PHILAKERESALSL 75

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A   +  G  ++V  +LE     +    +G T L  AV  N    ++ LL +   LT   
Sbjct: 76  A---STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TE 131

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT 230
              G+T +  A  LG+  +  ++     + I+ L++ +     
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIE----NHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 27/143 (18%), Positives = 41/143 (28%), Gaps = 43/143 (30%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQV-------NDKGDTPLH 78
             I   E+ + L   +AS   G    T+ V         LLL+        +  G TPL 
Sbjct: 62  PHILAKERESALS--LAST-GG---YTDIVG--------LLLERDVDINIYDWNGGTPLL 107

Query: 79  VAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAAKGS 136
            A +  H   VE L+            G D       +    +   T +  A    A G 
Sbjct: 108 YAVRGNHVKCVEALL----------ARGAD-------LTTEADSGYTPMDLA---VALGY 147

Query: 137 VEMVAEILENCPSADHRGPDGLT 159
            ++   I  +             
Sbjct: 148 RKVQQVIENHILKLFQSNLVPAD 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  102 bits (256), Expect = 1e-25
 Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 51/238 (21%)

Query: 31  HEKN----TVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ-------VNDKGDTPLHV 79
            +      + LH  +A   E + ++ E +          +          N+   TPLH+
Sbjct: 2   QQLTEDGDSFLH--LAIIHEEKALTMEVIR--------QVKGDLAFLNFQNNLQQTPLHL 51

Query: 80  AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEM 139
           A     P + E L+           +G D       + +   NT LH A     +G +  
Sbjct: 52  AVITNQPEIAEALLG----------AGCD-----PELRDFRGNTPLHLA---CEQGCLAS 93

Query: 140 VAEILENCPSADHRGP------DGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGW 192
           V  + ++C +            +G T LH A I     +++LL+     +  +E   +G 
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-PCNGR 152

Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
           T+LH A  L + ++ S++LK   D    + +   +G +   L   +   R+ +++ + 
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 97.2 bits (243), Expect = 7e-24
 Identities = 47/250 (18%), Positives = 80/250 (32%), Gaps = 61/250 (24%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE 127
           Q+ + GD+ LH+A      A+   +I+  K     L             +N  + T LH 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-----------FQNNLQQTPLHL 51

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR-- 185
           AV        E+   +L      + R   G T LH A        + +L +         
Sbjct: 52  AVI---TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 186 ---ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
                + +G T LH A+  G+  I  +++    D + A  +E   G TALHLA       
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNA--QEPCNGRTALHLAVDLQNPD 165

Query: 243 VVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL 302
           +V  +++   +                                     ++     G +P 
Sbjct: 166 LVSLLLKCGAD-------------------------------------VNRVTYQGYSPY 188

Query: 303 HVLAAACRDS 312
            +     R S
Sbjct: 189 QL--TWGRPS 196

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.4 bits (207), Expect = 8e-19
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 32/183 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLL-VENEEKNTALHEA 128
           + +G+TPLH+A +    A V VL           +S        +L   N   +T LH A
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLT----------QSCTTPHLHSILKATNYNGHTCLHLA 124

Query: 129 VQSAAKGSVEMV-------AEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKK 181
                 G + +V       A++  N         +G T LH AV     D++ LLL+   
Sbjct: 125 SI---HGYLGIVELLVSLGADV--NAQE----PCNGRTALHLAVDLQNPDLVSLLLKCG- 174

Query: 182 ILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
                    G++          + I   + +   + +    +                + 
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL----QMLPESEDEESYDTESEFT 230

Query: 242 RVV 244
              
Sbjct: 231 EFT 233

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (258), Expect = 1e-25
 Identities = 38/237 (16%), Positives = 80/237 (33%), Gaps = 39/237 (16%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           +  G +  + A    +  +V  L+           +G             E    LH+A 
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLL----------NAGAL-------KNLLENEFPLHQA- 69

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR 189
             A     ++V  +L +          G T L+ AV       +KL ++K   L     +
Sbjct: 70  --ATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGK 126

Query: 190 HGW-TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
            GW TS +HA  L   +I S  L            +    ++ +H+    G+  ++  ++
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-----DLAILLSCIHITIKNGHVDMMILLL 181

Query: 249 RHCPESYSIVDNRGWNAR-HFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
            +   + +  ++  +      A+ +    +L++L +           D N  +    
Sbjct: 182 DYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKY----------DINIYSANLE 227

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 31/182 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           +DKG+T L+ A    +   V++ +          +        ++        T+ + AV
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFV----------KKNWR----LMFYGKTGWKTSFYHAV 137

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR 189
                  V +V+  L   PS        L+ +H  +     D++ LLL+     T   + 
Sbjct: 138 M---LNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNS 192

Query: 190 HGWT-SLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
             +   +  A       +   + K + +             +A           + + II
Sbjct: 193 LLFIPDIKLAIDNKDIEMLQALFKYDIN-----------IYSANLENVLLDDAEIAKMII 241

Query: 249 RH 250
             
Sbjct: 242 EK 243

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 12/155 (7%), Positives = 46/155 (29%), Gaps = 38/155 (24%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN---TALH 126
                + +H+  K  H  ++ +L+          +                       + 
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLL----------DYMTS-------TNTNNSLLFIPDIK 200

Query: 127 EAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTR 185
            A        +EM+  + +          +  +     V+ +  ++ K+++EK  +   +
Sbjct: 201 LA---IDNKDIEMLQALFKY-------DINIYSANLENVLLDDAEIAKMIIEKHVEY--K 248

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA 220
                    +          +  ++ K+++ +++ 
Sbjct: 249 SDSYTKDLDIVKNN-----KLDEIISKNKELRLMY 278

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  102 bits (256), Expect = 1e-25
 Identities = 53/251 (21%), Positives = 86/251 (34%), Gaps = 47/251 (18%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTAL 125
            ++D     +  A +         L+          E+G D       V   ++E  T L
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELV----------EAGYD-------VRQPDKENVTLL 46

Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPD-GLTTLHAAVICNAEDVIKLLLEKKKILT 184
           H A   A    +++V   +      D  G D   T LH A       ++  L++     +
Sbjct: 47  HWA---AINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103

Query: 185 RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER-V 243
              D  G + +H AA  GH++I + ++    D        D  GMT L  AA + +    
Sbjct: 104 -LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV----DMMDQNGMTPLMWAAYRTHSVDP 158

Query: 244 VRRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDK 296
            R ++                A H+A   L G   V+  LLE         G     ++ 
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWA--VLAGNTTVISLLLE--------AGANVDAQNI 208

Query: 297 NGNTPLHVLAA 307
            G + L  LA 
Sbjct: 209 KGESALD-LAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 97.1 bits (243), Expect = 1e-23
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 23/182 (12%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
            D   TPLH A +  H ++V  L+          + G D       + + E  + +H A 
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLM----------KYGAD-----PSLIDGEGCSCIHLAA 117

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVIKLLLEKKKILTRERD 188
           Q    G   +VA ++      D    +G+T L  AA   ++ D  +LLL     +     
Sbjct: 118 Q---FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174

Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
            H  T+LH A   G++ + S++L++  +       ++ +G +AL LA  +    ++  + 
Sbjct: 175 YHKNTALHWAVLAGNTTVISLLLEAGANV----DAQNIKGESALDLAKQRKNVWMINHLQ 230

Query: 249 RH 250
             
Sbjct: 231 EA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 27/153 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHE 127
           + +G + +H+AA+  H ++V  LI            G D       V+  ++N  T L  
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLI----------AKGQD-------VDMMDQNGMTPLMW 148

Query: 128 AVQSAAKGSVEMVAEIL-ENCPSADHRG-PDGLTTLHAAVICNAEDVIKLLLEKK-KILT 184
           A   A +        +L     S +        T LH AV+     VI LLLE    +  
Sbjct: 149 A---AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-- 203

Query: 185 RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDK 217
             ++  G ++L  A    +  + + + ++   K
Sbjct: 204 DAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  100 bits (252), Expect = 3e-25
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 35/201 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
              G+T LH+AA   +     VL++             + +   +  E  E  TALH A 
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLMEA----------APELVFEPMTSELYEGQTALHIA- 82

Query: 130 QSAAKGSVEMV-------AEI------LENCPSADHRGPDGLTTLHAAVICNAEDVIKLL 176
                 +V +V       A +              +    G   L  A    +E++++LL
Sbjct: 83  --VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140

Query: 177 LEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLK------SEDDKIVALYKEDDRGM 229
           +E    I  R +D  G T LH      +      M          D         +++G+
Sbjct: 141 IEHGADI--RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL 198

Query: 230 TALHLAASQGYERVVRRIIRH 250
           T   LA  +G   + + +++ 
Sbjct: 199 TPFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 90.4 bits (225), Expect = 3e-21
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 28/207 (13%)

Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSAD--HRGPDGLTTLHAAVICNAEDVIKLLLEK- 179
           + L  A   A +  V+ ++++L+     +   RG  G T LH A + +  +   +L+E  
Sbjct: 5   SPLLLA---AKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 180 ---KKILTRERDRHGWTSLHHAAYLGHSNITSMML--------KSEDDKI-VALYKEDDR 227
                         G T+LH A    + N+   +L        ++         +     
Sbjct: 61  PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY 120

Query: 228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFA-------MVSLRGGVLKS 280
           G   L  AA  G E +VR +I H  +     D+ G    H                +L S
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179

Query: 281 LLENPYVISLIHGRDKNGNTPLHVLAA 307
                ++ SL    +  G TP   LA 
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFK-LAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 26/168 (15%)

Query: 157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD 216
             + L  A   N    +  LL+ +     +R   G T+LH AA   +     +++++  +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 217 KIVALY-KEDDRGMTALHLAASQGYERVVRRIIRH------------CPESYSIVDNRGW 263
            +      E   G TALH+A       +VR ++                     +   G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 264 NARHFAMVSLRGGVLKSLLENPYVISLIHG-----RDKNGNTPLHVLA 306
           +   FA       +++ L+E        HG     +D  GNT LH+L 
Sbjct: 123 HPLSFAACVGSEEIVRLLIE--------HGADIRAQDSLGNTVLHILI 162

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  101 bits (252), Expect = 7e-25
 Identities = 48/281 (17%), Positives = 79/281 (28%), Gaps = 59/281 (20%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
                  +  A    +   +E L+ F ++     +   D        + E   T L +A+
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRS---KKRLTDSE----FKDPETGKTCLLKAM 62

Query: 130 QSAAKGSVEMVAEILENCPSADHRGP-----------DGLTTLHAAVICNAEDVIKLLLE 178
            +   G  + +A +L+     D                G T LH A+      ++ LL+E
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

Query: 179 K-------------KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKED 225
                         KK   R     G   L  AA      I   +L     +   +   D
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL-QNSWQPADISARD 181

Query: 226 DRGMTALHLAASQGYERVVR---------------RIIRHCPESYSIVDNRGWNARHFAM 270
             G T LH         V                   +    +   I + +G      A 
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241

Query: 271 VSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRD 311
            S + GVL  +L+          R+ +     H   AA   
Sbjct: 242 SSGKIGVLAYILQ----------REIHEPECRHA--AAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.9 bits (244), Expect = 9e-24
 Identities = 44/257 (17%), Positives = 80/257 (31%), Gaps = 53/257 (20%)

Query: 51  STEFVEGILEMCPSLLLQVNDK-------GDTPLHVA---AKCRHPAVVEVLIKFAKKQS 100
           + + +E +L        ++ D        G T L  A           + +L+  A+K  
Sbjct: 25  NCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK-- 82

Query: 101 RELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMV-------AEI-------LEN 146
              +S   ++         +  TALH A     + ++ +V       A++          
Sbjct: 83  --TDSLKQFVNASYTDSYYKGQTALHIA---IERRNMTLVTLLVENGADVQAAANGDFFK 137

Query: 147 CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKIL--TRERDRHGWTSLHHAAYLGHS 204
                     G   L  A   N   ++K LL+          RD  G T LH    +  +
Sbjct: 138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADN 197

Query: 205 NITSMMLKSE------------DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCP 252
            + +    +                +      + +G+T L LAAS G   V+  I++   
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-- 255

Query: 253 ESYSIVDNRGWNARHFA 269
                 +      RH A
Sbjct: 256 ------EIHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 42/239 (17%), Positives = 71/239 (29%), Gaps = 68/239 (28%)

Query: 117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPD--------GLTTLHAAVI-- 166
                  ++ +AV   A+ + + +  +L     +  R  D        G T L  A++  
Sbjct: 9   PRLYDRRSIFDAV---AQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 167 -CNAEDVIKLLLEKKKIL----------TRERDRHGWTSLHHAAYLGHSNITSMML---- 211
                D I LLL+  +              +    G T+LH A    +  + ++++    
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 212 ------KSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA 265
                   +  K          G   L LAA      +V                     
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV--------------------- 164

Query: 266 RHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYE 324
                        K LL+N +  + I  RD  GNT LH L     ++       + MY 
Sbjct: 165 -------------KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.9 bits (179), Expect = 8e-15
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 33/146 (22%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQ-- 130
           G+ PL +AA     A+V+ L+     Q+    + +          +   NT LH  V+  
Sbjct: 148 GELPLSLAACTNQLAIVKFLL-----QNSWQPADIS-------ARDSVGNTVLHALVEVA 195

Query: 131 -----------SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
                      S     + + A++       +     GLT L  A       V+  +L++
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 180 KKILTRERDRHGWTSLHHAAYLGHSN 205
                   + H     H AA+  H +
Sbjct: 256 --------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 30/152 (19%)

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVAL----YKEDDRGMTALHLA---ASQ 238
               +   S+  A    +      +L         L    +K+ + G T L  A      
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 239 GYERVVRRIIRH----------CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN---- 284
           G    +  ++               SY+    +G  A H A+      ++  L+EN    
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127

Query: 285 -------PYVISLIHGRDKNGNTPLHVLAAAC 309
                   +  +        G  PL +  AAC
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSL--AAC 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 97.5 bits (244), Expect = 1e-24
 Identities = 41/181 (22%), Positives = 66/181 (36%), Gaps = 29/181 (16%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHEAVQ 130
               +H  A       +   I          E           + + ++   T L  A  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRI----------EQENV-------INHTDEEGFTPLMWA-- 43

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDR 189
            AA G + +V  +L+N       G    + L  A      D++K+LL+    +   E D 
Sbjct: 44  -AAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV--NEYDW 100

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
           +G T L +A +  H     M+L+S  D       E D G  ++ LA + GY  V + I  
Sbjct: 101 NGGTPLLYAVHGNHVKCVKMLLESGADP----TIETDSGYNSMDLAVALGYRSVQQVIES 156

Query: 250 H 250
           H
Sbjct: 157 H 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 84.4 bits (210), Expect = 8e-20
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 23/182 (12%)

Query: 122 NTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK- 180
           + ++H+    AA+G +  +A  +E     +H   +G T L  A       V++ LL+   
Sbjct: 4   SLSVHQL---AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 181 KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY 240
               +   +   ++L  A   G+++I  M+L    D      + D  G T L  A    +
Sbjct: 61  DP--QLLGKGRESALSLACSKGYTDIVKMLLDCGVDV----NEYDWNGGTPLLYAVHGNH 114

Query: 241 ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHGRDKNG 298
            + V+ ++    +  +I  + G+N+   A     G   V + +          H      
Sbjct: 115 VKCVKMLLESGADP-TIETDSGYNSMDLA--VALGYRSVQQVIES--------HLLKLLQ 163

Query: 299 NT 300
           N 
Sbjct: 164 NI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 80.1 bits (199), Expect = 3e-18
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 23/145 (15%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           +++G TPL  AA     AVVE L+          ++G D        +   + + +AL  
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLL----------QNGAD-------PQLLGKGRESALSL 75

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A    +KG  ++V  +L+     +    +G T L  AV  N    +K+LLE     T   
Sbjct: 76  A---CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-IE 131

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLK 212
              G+ S+  A  LG+ ++  ++  
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 76.7 bits (190), Expect = 4e-17
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 23/156 (14%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED 215
               ++H          +   +E++ ++    D  G+T L  AA  G   +   +L++  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 216 DKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG 275
           D             +AL LA S+GY  +V+ ++    +  +  D  G     +A      
Sbjct: 61  DP----QLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYA--VHGN 113

Query: 276 --GVLKSLLENPYVISLIHG-----RDKNGNTPLHV 304
               +K LLE         G        +G   + +
Sbjct: 114 HVKCVKMLLE--------SGADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 64.3 bits (158), Expect = 1e-12
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 27/127 (21%)

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
               S+H  A  G     +  ++ E+         D+ G T L  AA+ G   VV  +++
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVI----NHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

Query: 250 H--CPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNGNT 300
           +   P+   ++     +A   A    +G   ++K LL+         G      D NG T
Sbjct: 58  NGADPQ---LLGKGRESALSLA--CSKGYTDIVKMLLD--------CGVDVNEYDWNGGT 104

Query: 301 PLHVLAA 307
           PL   A 
Sbjct: 105 PLL-YAV 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 98.5 bits (246), Expect = 3e-24
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 38/249 (15%)

Query: 71  DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQ 130
             G   L    +          I            G+       +  N      L ++  
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERI----------AHGMR------VKFNPLPLALLLDS-- 44

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDR 189
            + +G  ++V  I+           +G+T LH AV     +++K L++    +     D 
Sbjct: 45  -SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV--NAADS 101

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
            GWT LH AA   +  +   +++S    + A+   D +          +GY +  + +  
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160

Query: 250 HCPESYSIVDNRGWNARHFA------MVSLRGGVLKSLL------ENPYVISLIHGRDKN 297
              E   I++     A           + ++ G   +++      E  +  +     DK 
Sbjct: 161 VQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWA--RLNDKE 217

Query: 298 GNTPLHVLA 306
           G  P ++L 
Sbjct: 218 GYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 41/182 (22%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           ND+G T LH A    H  +V+ L++F          GV+       V   + +  T LH 
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQF----------GVN-------VNAADSDGWTPLHC 109

Query: 128 AVQSAAKGSVEMV-------AEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK 180
           A       +V++        A +        +            +        + L   +
Sbjct: 110 AAS---CNNVQVCKFLVESGAAVFA----MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

Query: 181 -KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG 239
            K+     ++    +L          +       E D +  +++ED+        A    
Sbjct: 163 EKM--GIMNKGVIYALWDYEPQNDDEL----PMKEGDCMTIIHREDE-DEIEWWWARLND 215

Query: 240 YE 241
            E
Sbjct: 216 KE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 24/129 (18%)

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           +  G  SL            S  +           K +   +  L  ++ +G   +V+RI
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV-----KFNPLPLALLLDSSLEGEFDLVQRI 56

Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNGNT 300
           I    +  S+ ++ G  A H A     G   ++K L++         G      D +G T
Sbjct: 57  IYEVDDP-SLPNDEGITALHNA--VCAGHTEIVKFLVQ--------FGVNVNAADSDGWT 105

Query: 301 PLHVLAAAC 309
           PLH  AA+C
Sbjct: 106 PLH-CAASC 113

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 98.0 bits (244), Expect = 3e-24
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 27/237 (11%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
                   ++A   +   + E ++                        +++  TALH A 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERIL----------ADKSL-----ATRTDQDSRTALHWA- 47

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR 189
              + G  E+V  +L+     + +   G + LH A     ++++K LL K   +    ++
Sbjct: 48  --CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQ 104

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
           +G T LH+AA      I  M+L+   +       +D    TA+H AA++G  ++V  ++ 
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 250 HCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
           +     +I D  G    H A    R    K L+      + I+  +K   TPL V  
Sbjct: 161 YKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQG---ASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 92.6 bits (230), Expect = 3e-22
 Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 30/217 (13%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           +    T LH A    H  +VE L+          + GV        V   ++   + LH 
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLL----------QLGVP-------VNDKDDAGWSPLHI 79

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A   A+ G  E+V  +L      +    +G T LH A   N  ++  +LLE        +
Sbjct: 80  A---ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AK 135

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D +  T++H AA  G+  +  ++L  +         +D  G T LHLA  +      + +
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
           +        I +         A   L  G++   L  
Sbjct: 192 VTQGAS-IYIENKEEKTPLQVAKGGL--GLILKRLAE 225

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 97.1 bits (243), Expect = 6e-24
 Identities = 50/264 (18%), Positives = 94/264 (35%), Gaps = 60/264 (22%)

Query: 57  GILEMCPSLLLQ-------VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDW 109
               +    + Q        +  G+T LH+AA+       + L+          E+  D 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL----------EASAD- 50

Query: 110 IRWMLLVE--NEEKNTALHEAVQSAAKGSVEMVAEIL-----ENCPSADHRGPDGLTTLH 162
                     +    T LH A    +  +   V +IL      +  +  H   DG T L 
Sbjct: 51  ------ANIQDNMGRTPLHAA---VSADAQG-VFQILIRNRATDLDARMH---DGTTPLI 97

Query: 163 AAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVAL 221
            A     E +++ L+     +     D  G ++LH AA + + +   ++LK+  +K    
Sbjct: 98  LAARLAVEGMLEDLINSHADV--NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK---- 151

Query: 222 YKEDDRGMTALHLAASQGYERVVRRIIRH--CPESYSIVDNRGWNARHFAMVSLRGGVLK 279
             +++R  T L LAA +G     + ++ H    +   I D+     R  A   +   +++
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVR 208

Query: 280 SLLENPYVISLIHGRDKNGNTPLH 303
            L E        +      +  LH
Sbjct: 209 LLDE--------YN--LVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 54/238 (22%), Positives = 82/238 (34%), Gaps = 47/238 (19%)

Query: 85  HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENE---EKNTALHEAVQSAAKGSVEMVA 141
            PAV+   I            G         + N+      TALH A   A     +   
Sbjct: 3   APAVISDFI----------YQGAS-------LHNQTDRTGETALHLA---ARYSRSDAAK 42

Query: 142 EILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYL 201
            +LE    A+ +   G T LHAAV  +A+ V ++L+  +      R   G T L  AA L
Sbjct: 43  RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102

Query: 202 GHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNR 261
               +   ++ S  D    +   DD G +ALH AA+         ++++      + +NR
Sbjct: 103 AVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR 157

Query: 262 GWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNGNTPLHVLAAACRDS 312
                  A  +  G     K LL+        H       D     P  +  A  R  
Sbjct: 158 EETPLFLA--AREGSYETAKVLLD--------HFANRDITDHMDRLPRDI--AQERMH 203

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 18/145 (12%)

Query: 168 NAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDR 227
           +A  VI   + +   L  + DR G T+LH AA    S+    +L++  D       +D+ 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA----NIQDNM 57

Query: 228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYV 287
           G T LH A S   + V + +IR+         + G      A      G+L+ L+     
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN---- 113

Query: 288 ISLIHG-----RDKNGNTPLHVLAA 307
                       D  G + LH  AA
Sbjct: 114 ----SHADVNAVDDLGKSALH-WAA 133

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 97.2 bits (242), Expect = 1e-23
 Identities = 43/256 (16%), Positives = 73/256 (28%), Gaps = 53/256 (20%)

Query: 75  TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAK 134
             L        P  +  L+++ +  S+ L             E     T L +AV +   
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAY-------TEGSTGKTCLMKAVLNLQD 56

Query: 135 GSVEMVAEILENCPSADHRGP-----------DGLTTLHAAVICNAEDVIKLLLEK---- 179
           G    +  +L+    + +  P            G + LH A+   +   +KLL+E     
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116

Query: 180 --------KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTA 231
                    +         G   L  AA     ++ + +L     +  +L   D  G T 
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL-ENPHQPASLEATDSLGNTV 175

Query: 232 LHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLI 291
           LH                         ++   +A    M      +   L        L 
Sbjct: 176 LHALVMIAD------------------NSPENSALVIHMYDGLLQMGARLCPTV---QLE 214

Query: 292 HGRDKNGNTPLHVLAA 307
              +  G TPL  LAA
Sbjct: 215 EISNHQGLTPLK-LAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 85.2 bits (211), Expect = 3e-19
 Identities = 46/253 (18%), Positives = 86/253 (33%), Gaps = 41/253 (16%)

Query: 11  KGEIEPFNEIAKDELVSIATHEKN--TVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ 68
            G +E     +K    S  T      T L   + + Q+G       +  I +   +    
Sbjct: 19  TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78

Query: 69  VN-------DKGDTPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVENEE 120
           VN        +G + LH+A + R    V++L++  A    R       + +         
Sbjct: 79  VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR---FFQKHQGTCFYF 135

Query: 121 KNTALHEAVQSAAKGSVEMVAEILENCPSA---DHRGPDGLTTLHAAVICNAEDVIKLLL 177
               L  A   A     ++V  +LEN       +     G T LHA V+           
Sbjct: 136 GELPLSLA---ACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI---------- 182

Query: 178 EKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
                     +    ++L    Y G   + + +  +   + ++    + +G+T L LAA 
Sbjct: 183 --------ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS----NHQGLTPLKLAAK 230

Query: 238 QGYERVVRRIIRH 250
           +G   + R I++ 
Sbjct: 231 EGKIEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.4 bits (201), Expect = 6e-18
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 29/183 (15%)

Query: 159 TTLHAAV----ICNAEDVIKLLLEKKKILT---RERDRHGWTSLHHAA---YLGHSNITS 208
             L + V          +++ L    K LT         G T L  A      G +    
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 209 MMLKSEDDKIVALY-------KEDDRGMTALHLAASQGYERVVRRIIRH----------- 250
            +L+ + D              E  +G +ALH+A  +   + V+ ++ +           
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 251 -CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC 309
              +        G      A  + +  V+  LLENP+  + +   D  GNT LH L    
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 310 RDS 312
            +S
Sbjct: 184 DNS 186

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 95.6 bits (239), Expect = 1e-23
 Identities = 39/200 (19%), Positives = 78/200 (39%), Gaps = 27/200 (13%)

Query: 116 VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKL 175
           ++  E    L  A     + + ++   + +     D    +G T L+ AV  N  ++ K 
Sbjct: 1   MKTYEVGALLEAA---NQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 176 LLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHL 234
           L+++   I    ++    +   +A   G + I + MLK     +    K +  G  AL  
Sbjct: 58  LIDRGADI--NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL---NKHNRYGGNALIP 112

Query: 235 AASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGG-----VLKSLLENPYVIS 289
           AA +G+   V+ ++    E     ++ G+ A   A+    G      ++K L+E      
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME------ 166

Query: 290 LIHG-----RDKNGNTPLHV 304
             +G     +D +G T +  
Sbjct: 167 --NGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 92.9 bits (232), Expect = 1e-22
 Identities = 47/237 (19%), Positives = 94/237 (39%), Gaps = 51/237 (21%)

Query: 28  IATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ---VNDK---GDTPLHVAA 81
           + T+E   +L    A+Q               ++   L      V++    G+TPL++A 
Sbjct: 1   MKTYEVGALLE--AANQ-----------RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV 47

Query: 82  KCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQSAAKGSVEM 139
                 + + LI          + G D       +   N   ++    A    A+G  E+
Sbjct: 48  HNNDIEIAKALI----------DRGAD-------INLQNSISDSPYLYA---GAQGRTEI 87

Query: 140 VAEILEN-CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHA 198
           +A +L++  P  +     G   L  A      D +KLLLE  +     ++  G+T+L  A
Sbjct: 88  LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147

Query: 199 AYL-----GHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
             L      + +I  +++++  D+      +D+ G TA+  A  +GY  + + + ++
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQ----SIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 92.5 bits (231), Expect = 2e-22
 Identities = 39/207 (18%), Positives = 80/207 (38%), Gaps = 31/207 (14%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
             +    L  A +     V E+L           ++          V+  + E NT L+ 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQ----------DTTYQ-------VDEVDTEGNTPLNI 45

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A        +E+   +++     + +     +    A      +++  +L+       + 
Sbjct: 46  A---VHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH 102

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA-----SQGYER 242
           +R+G  +L  AA  GH +   ++L+   + I     ++D G TAL  A      +Q Y+ 
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDI---DFQNDFGYTALIEAVGLREGNQLYQD 159

Query: 243 VVRRIIRHCPESYSIVDNRGWNARHFA 269
           +V+ ++ +  +  SI DN G  A  +A
Sbjct: 160 IVKLLMENGAD-QSIKDNSGRTAMDYA 185

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.0 bits (235), Expect = 2e-23
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 28/181 (15%)

Query: 72  KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAV 129
           +    L  AA       V  L+             V         +  N    TAL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLL---------HRELVH-------PDALNRFGKTALQ--- 41

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR 189
                GS  +  E+L+   S + +   G + +H A      D +K+L+E         D 
Sbjct: 42  -VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDG 99

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
            G   +H A   GH+ + S +    D     L++ D RG+T L LA  +G + +V  +  
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAAESD-----LHRRDARGLTPLELALQRGAQDLVDILQG 154

Query: 250 H 250
           H
Sbjct: 155 H 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 25/145 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHE 127
           N  G T L V       A+   L+          + G            ++ +  + +H+
Sbjct: 33  NRFGKTALQVMMFG-STAIALELL----------KQGAS-------PNVQDTSGTSPVHD 74

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A   A  G ++ +  ++E+    +     G   +H AV      V+  L  +  +    R
Sbjct: 75  A---ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL--HRR 129

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLK 212
           D  G T L  A   G  ++  ++  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 15/153 (9%)

Query: 157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD 216
               L  A        ++ LL ++ +     +R G T+L    + G + I   +LK    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 217 KIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG- 275
             V     D  G + +H AA  G+   ++ ++ H  +  ++ D  G    H A     G 
Sbjct: 61  PNVQ----DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLA--VQEGH 113

Query: 276 -GVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
             V+  L       S +H RD  G TPL  LA 
Sbjct: 114 TAVVSFLAAE----SDLHRRDARGLTPLE-LAL 141

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.0 bits (239), Expect = 4e-23
 Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 48/237 (20%)

Query: 55  VEGILEMCPSLLLQ---VNDK-------GDTPLHVAAKCR---HPAVVEVLIKFAKKQSR 101
            +G+  +   LL     + D+       G T L  A           + +L+  A+K   
Sbjct: 18  PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN 77

Query: 102 ELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEN--------------C 147
             E      R           TALH A     +     V  ++E                
Sbjct: 78  MREFINSPFRD----VYYRGQTALHIA---IERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 148 PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKIL--TRERDRHGWTSLHHAAYLGHSN 205
                    G   L  A   N   ++  L E        R +D  G T LH    +  + 
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 206 ITSMMLKSE------------DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
             +    ++                      ++ G++ L +AA  G   + + IIR 
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 30/201 (14%)

Query: 159 TTLHAAVICNA----EDVIKLLLEKKKILT---RERDRHGWTSLHHAAYL---GHSNITS 208
             L   V   +    E ++  LL  KK LT         G T L  A      G ++   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 209 MML------KSEDDKIVALYK-EDDRGMTALHLAASQGYERVVRRIIRH----------- 250
           ++L       +  + I + ++    RG TALH+A  +  +  V  ++             
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 251 --CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAA 308
              P+        G      A  + +  ++  L EN +  + +  +D  GNT LH L A 
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 309 CRDSSYFIVPDSDMYEAVNKQ 329
             ++       + MY+ +  +
Sbjct: 187 ADNTRENTKFVTKMYDLLLIK 207

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 79.8 bits (197), Expect = 2e-17
 Identities = 37/231 (16%), Positives = 70/231 (30%), Gaps = 50/231 (21%)

Query: 123 TALHEAVQSAAKGSVEMVAEILE-------NCPSADH-RGPDGLTTLHAAVIC---NAED 171
             L + V   ++GS + +  +L             +      G T L  A++       D
Sbjct: 7   PILFDIV---SRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63

Query: 172 VIKLLLEKKK----------ILTRERDRHGWTSLHHAAYLGHSNITSMML---------- 211
            I +LL+  +             R+    G T+LH A      +   +++          
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 212 KSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSI--VDNRGWNARHFA 269
           +    +          G   L LAA      +V  +  +  +   +   D+RG    H  
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 270 MVSLRGG-VLKSLLENPYVISLIHG------------RDKNGNTPLHVLAA 307
           +            +   Y + LI               + +G +PL  +AA
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAA 233

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.6 bits (231), Expect = 1e-22
 Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 26/183 (14%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE 127
           +   +G     +  K  H                      D           E  T    
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSS----------YIAAD--------VVSEYETPWWT 50

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A   A K   + ++++LE+    D    +G T L       ++  ++LL E    L    
Sbjct: 51  A---ARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
            R G T+LH AA      +   +++   D  V     D+RG+TAL LA            
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVE----DERGLTALELAREILKTTPKGNP 162

Query: 248 IRH 250
           ++ 
Sbjct: 163 MQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 30/139 (21%)

Query: 178 EKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
           E  KI+       G          GHS           D             T    AA 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-------VSEYETPWWTAAR 53

Query: 238 QGYERVVRRIIRHC-PESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHGR 294
           +  E+ + +++     ++   VD  G  A  F   +  G    ++ L E         G 
Sbjct: 54  KADEQALSQLLEDRDVDA---VDENGRTALLFV--AGLGSDKCVRLLAE--------AGA 100

Query: 295 D------KNGNTPLHVLAA 307
           D      + G T LH +AA
Sbjct: 101 DLDHRDMRGGLTALH-MAA 118

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 25/115 (21%), Positives = 35/115 (30%), Gaps = 39/115 (33%)

Query: 69  VNDK----GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTA 124
           ++ +    G T LH+AA    P VVE L+          E G D     + VE+E   TA
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALV----------ELGAD-----IEVEDERGLTA 146

Query: 125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
           L  A                                +        E VI +L  +
Sbjct: 147 LELA---REILKTT-PKGNP----------------MQFGRRIGLEKVINVLEGQ 181

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.7 bits (229), Expect = 2e-22
 Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALH 126
           + +     L  AA       +  L+          ++ V+       V   N    TAL 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLL----------QNNVN-------VNAQNGFGRTALQ 43

Query: 127 EAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTR 185
                   G+ E+   +L    + D +   G   +H A      D ++ LLE +  +   
Sbjct: 44  ----VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV--N 97

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
             D  G   LH AA  GH  +   ++K     +      + +G TA  LA   G   VV 
Sbjct: 98  IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH---RNHKGDTACDLARLYGRNEVVS 154

Query: 246 RIIRH 250
            +  +
Sbjct: 155 LMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 47/188 (25%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
            E     L  A   AA+G +E +  +L+N  + + +   G T L    + N E + + LL
Sbjct: 2   AEPWGNELASA---AARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE-IARRLL 57

Query: 178 EKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA 236
            +        +DR G+  +H AA  G  +    +L+ + D       ED+ G   LHLAA
Sbjct: 58  LRGANP--DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV----NIEDNEGNLPLHLAA 111

Query: 237 SQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDK 296
            +G+ RVV  +++H   +                                    +  R+ 
Sbjct: 112 KEGHLRVVEFLVKHTASN------------------------------------VGHRNH 135

Query: 297 NGNTPLHV 304
            G+T   +
Sbjct: 136 KGDTACDL 143

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 93.1 bits (232), Expect = 3e-22
 Identities = 44/265 (16%), Positives = 74/265 (27%), Gaps = 59/265 (22%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE 127
           +   +G     +  K  H                      D           E  T    
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSS----------YIAAD--------VVSEYETPWWT 51

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A   A K   + ++++LE+    D    +G T L       ++  ++LL E    L    
Sbjct: 52  A---ARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
            R G T+LH AA      +   +++   D    +  ED+RG+TAL LA            
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGAD----IEVEDERGLTALELAREILKTTPKGNP 163

Query: 248 IRH----------------CPESYSIV-----DNRGWNARHFAMVSLRGGVLKSLLENPY 286
           ++                   E   +        +G +  +       G           
Sbjct: 164 MQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV--- 220

Query: 287 VISLIHGRD---KNGNTPLHVLAAA 308
                H  +   K+    L   A A
Sbjct: 221 -----HVAEDVAKDYEDGLE-YAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 33/203 (16%), Positives = 57/203 (28%), Gaps = 52/203 (25%)

Query: 65  LLLQ---VNDK---GDTPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVE 117
            LL+   V+     G T L   A       V +L +  A    R++  G           
Sbjct: 63  QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG----------- 111

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
                TALH A   A     E+V  ++E     +     GLT L  A            +
Sbjct: 112 ----LTALHMA---AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 164

Query: 178 EK-----KKILTR----------------ERDRHGWTSLHHAAYLGHSNITSMMLKSEDD 216
           +       + +                  E+   G    +   +    +    +      
Sbjct: 165 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCE-WVKGVHVA 223

Query: 217 KIVALYKEDDRGMTALHLAASQG 239
           + VA  K+ +     L  A ++ 
Sbjct: 224 EDVA--KDYE---DGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 30/139 (21%)

Query: 178 EKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
           E  KI+       G          GHS           D             T    AA 
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-------VSEYETPWWTAAR 54

Query: 238 QGYERVVRRIIRH-CPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHGR 294
           +  E+ + +++     ++   VD  G  A  F   +  G    ++ L E         G 
Sbjct: 55  KADEQALSQLLEDRDVDA---VDENGRTALLFV--AGLGSDKCVRLLAE--------AGA 101

Query: 295 D------KNGNTPLHVLAA 307
           D      + G T LH +AA
Sbjct: 102 DLDHRDMRGGLTALH-MAA 119

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 90.2 bits (225), Expect = 8e-22
 Identities = 25/182 (13%), Positives = 60/182 (32%), Gaps = 24/182 (13%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
           + +    +    +  +   V + +          ++  + +       ++   + LH A 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWL----------DNTENDLN----QGDDHGFSPLHWA- 46

Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERD 188
               +G   +V  ++      +       T LH A      D+++ LL+ K  I     +
Sbjct: 47  --CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI--NAVN 102

Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
            HG   LH+A + G   +   ++ +           +  G   +  A +   E +  R  
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALV----SICNKYGEMPVDKAKAPLRELLRERAE 158

Query: 249 RH 250
           + 
Sbjct: 159 KM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 85.9 bits (214), Expect = 3e-20
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 17/158 (10%)

Query: 155 PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSE 214
           P+ +  +           ++L L+  +    + D HG++ LH A   G S +  M++   
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 215 DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH--CPESYSIVDNRGWNARHFAMVS 272
                     +    T LHLAAS G+  +V++++++         V+  G    H+A   
Sbjct: 63  ARI----NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHYA--C 113

Query: 273 LRG--GVLKSLLENPYVISLIHGRDKNGNTPLHVLAAA 308
             G   V + L+ N    +L+   +K G  P+   A A
Sbjct: 114 FWGQDQVAEDLVANG---ALVSICNKYGEMPVD-KAKA 147

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.6 bits (208), Expect = 2e-19
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 21/188 (11%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSA-DHRGPDGLTTLHAAVICNAEDVIKLL 176
           + E    +    +   +G+   V   L+N  +  +     G + LH A       V+++L
Sbjct: 2   SPEFMDDIFTQCR---EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 58

Query: 177 LEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA 235
           + +  +I     +R   T LH AA  GH +I   +L+ + D    +   ++ G   LH A
Sbjct: 59  IMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD----INAVNEHGNVPLHYA 112

Query: 236 ASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRD 295
              G ++V   ++ +     SI +  G      A   LR  + +   +         G++
Sbjct: 113 CFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK--------MGQN 163

Query: 296 KNGNTPLH 303
            N   P  
Sbjct: 164 LN-RIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 29/137 (21%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           N   DTPLH+AA   H  +V+ L++             D       +   NE  N  LH 
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQ----------YKAD-------INAVNEHGNVPLHY 111

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A      G  ++  +++ N          G   +  A     E + +   +  + L R  
Sbjct: 112 A---CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR-- 166

Query: 188 DRHGWTSLHHAAYLGHS 204
                       + G +
Sbjct: 167 -----IPYKDTFWKGTT 178

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 88.6 bits (221), Expect = 2e-21
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQ 130
               L  AA+      V +L+           +G D       V   +    T LH A  
Sbjct: 14  LGKKLLEAARAGRDDEVRILM----------ANGAD-------VNAEDASGWTPLHLA-- 54

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDR 189
            A  G +E+V  +L+N    +     G+T L  A +    +++++LL+    +     D 
Sbjct: 55  -AFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV--NANDM 111

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
            G T LH AA  GH  I  ++LK+  D       +D  G TA  ++   G E +   + +
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNGADV----NAQDKFGKTAFDISIDNGNEDLAEILQK 167

Query: 250 H 250
            
Sbjct: 168 L 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 74.3 bits (184), Expect = 4e-16
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 25/161 (15%)

Query: 152 HRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMM 210
           H G D    L  A     +D +++L+     +     D  GWT LH AA+ GH  I  ++
Sbjct: 9   HHGSDLGKKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAAFNGHLEIVEVL 66

Query: 211 LKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAM 270
           LK+  D        D  GMT L LAA  G+  +V  ++++  +  +  D  G    H A 
Sbjct: 67  LKNGADV----NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLA- 120

Query: 271 VSLRG--GVLKSLLENPYVISLIHG-----RDKNGNTPLHV 304
            ++ G   +++ LL+        +G     +DK G T   +
Sbjct: 121 -AMFGHLEIVEVLLK--------NGADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 22/112 (19%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           +  G TPL +AA   H  +VEVL+          ++G D       V   + E +T LH 
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLL----------KNGAD-------VNANDMEGHTPLHL 119

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
           A   A  G +E+V  +L+N    + +   G T    ++    ED+ ++L + 
Sbjct: 120 A---AMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 86.7 bits (216), Expect = 8e-21
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 28/175 (16%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
               L  AA+      V +L+           +G           +    + LH A   A
Sbjct: 2   LGKKLLEAARAGQDDEVRILM----------ANGAP------FTTDWLGTSPLHLA---A 42

Query: 133 AKGSVEMVAEIL-ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRH 190
             G      E+L     S D R     T LH A      +++++LL+    +    +D  
Sbjct: 43  QYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV--NAKDML 99

Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
             T+LH A    H  +  +++K   D     + +     TA  ++   G E +  
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADV----HTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.7 bits (185), Expect = 2e-16
 Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 122 NTALHEAVQSAAKGSVEMVAEILEN--CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
              L EA   A  G  + V  ++ N    + D     G + LH A         ++LL  
Sbjct: 3   GKKLLEA---ARAGQDDEVRILMANGAPFTTDW---LGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 180 K-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ 238
                   R +   T LH AA  GH+NI  ++LK   D       +D   MTALH A   
Sbjct: 57  GVSR--DARTKVDRTPLHMAASEGHANIVEVLLKHGADV----NAKDMLKMTALHWATEH 110

Query: 239 GYERVVRRIIRHCPESYSIVDNRGWNARHFA 269
            ++ VV  +I++  +           A   +
Sbjct: 111 NHQEVVELLIKYGAD-VHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 73.2 bits (181), Expect = 6e-16
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 25/141 (17%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           +  G +PLH+AA+  H +  EVL+           +GV         +   +   T LH 
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLL----------RAGVS-------RDARTKVDRTPLHM 73

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRE 186
           A   A++G   +V  +L++    + +    +T LH A   N ++V++LL++    +    
Sbjct: 74  A---ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV--HT 128

Query: 187 RDRHGWTSLHHAAYLGHSNIT 207
           + +   T+   +   G+ ++ 
Sbjct: 129 QSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 71.6 bits (177), Expect = 2e-15
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 23/158 (14%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSE 214
           D    L  A     +D +++L+           D  G + LH AA  GH + T ++L++ 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 215 DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR 274
             +            T LH+AAS+G+  +V  +++H  +  +  D     A H+A     
Sbjct: 58  VSR----DARTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNH 112

Query: 275 GGVLKSLLENPYVISLIHG-----RDKNGNTPLHVLAA 307
             V++ L++        +G     + K   T    ++ 
Sbjct: 113 QEVVELLIK--------YGADVHTQSKFCKTAFD-ISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.5 bits (130), Expect = 5e-09
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 22/109 (20%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
                TPLH+AA   H  +VEVL+          + G D       V   +  K TALH 
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLL----------KHGAD-------VNAKDMLKMTALHW 106

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLL 176
           A         E+V  +++       +     T    ++    ED+ ++L
Sbjct: 107 A---TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 86.7 bits (216), Expect = 1e-20
 Identities = 43/184 (23%), Positives = 64/184 (34%), Gaps = 27/184 (14%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
            N + D  L  AAK      V+ L              V+  R         ++T LH A
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQ---------SVN-CR----DIEGRQSTPLHFA 49

Query: 129 VQSAAKGSVEMVAEIL-ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRE 186
              A    V  V E L ++      +   GL  LH A      +V +LL++    +    
Sbjct: 50  ---AGYNRVS-VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV--NV 103

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
            D   +T LH AA  G   I  ++L+   D      K++  G T L L    G   +   
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADP----TKKNRDGNTPLDLVK-DGDTDIQDL 158

Query: 247 IIRH 250
           +   
Sbjct: 159 LRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 26/158 (16%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED 215
           +    L  A      + +K L   + +  R+ +    T LH AA     ++   +L+   
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66

Query: 216 DKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSI--VDNRGWNARHFAMVSL 273
           D     + +D  G+  LH A S G+  V   +++H      +   D   +   H A  + 
Sbjct: 67  DV----HAKDKGGLVPLHNACSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEA--AA 117

Query: 274 RG--GVLKSLLENPYVISLIHG-----RDKNGNTPLHV 304
           +G   + K LL+        HG     ++++GNTPL +
Sbjct: 118 KGKYEICKLLLQ--------HGADPTKKNRDGNTPLDL 147

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 89.3 bits (221), Expect = 3e-20
 Identities = 44/264 (16%), Positives = 86/264 (32%), Gaps = 32/264 (12%)

Query: 22  KDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGD----TPL 77
           ++   S+     N       ++QQ+        ++ + +  P+  L +N   D    TPL
Sbjct: 76  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135

Query: 78  HVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSV 137
           H      +  +V+ L+K           G +      L  +    + L +AV+S      
Sbjct: 136 HWLTSIANLELVKHLVKH----------GSN-----RLYGDNMGESCLVKAVKSVNNYDS 180

Query: 138 EMVAEILE-NCPSADHRGPDGLTTLHAAVICNAE-----------DVIKLLLEKKKILTR 185
                +L+   P          T LH  +I +             D++   + KK+    
Sbjct: 181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 240

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
           +   +   S  +       +     L  +      L  +D  G T L++AA  G   +V 
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300

Query: 246 RIIRHCPESYSIVDNRGWNARHFA 269
            ++ +      I +  G     F 
Sbjct: 301 ALLDYGA-DPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.3 bits (182), Expect = 4e-15
 Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 22/216 (10%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD---HRGPDGLTTLHAAVICNAEDVIK 174
           N E  ++  +    +    ++ V +   N    +        G T LH        +++K
Sbjct: 90  NSEGGSSNQQQQHVSFDSLLQEVNDAFPN-TQLNLNIPVDEHGNTPLHWLTSIANLELVK 148

Query: 175 LLLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH 233
            L++          D  G + L  A    ++  +       D     L  ED    T LH
Sbjct: 149 HLVKHGSNR--LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH 206

Query: 234 LAASQG------------YERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSL 281
                              + ++  I++          N   +  +      +  +L++L
Sbjct: 207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 266

Query: 282 LENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIV 317
                + ++++ +D NG+T L++   A R  +  IV
Sbjct: 267 DLKWIIANMLNAQDSNGDTCLNI---AARLGNISIV 299

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.1 bits (166), Expect = 5e-13
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 27/180 (15%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
            ++ G++ L  A K  +                 L+     +     +E+    T LH  
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTFEAL-------LDYLYPCLI----LEDSMNRTILHHI 208

Query: 129 VQSA--------AKGSVEMVAE-ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
           + ++        AK  ++++   I++        G +   +         +D I   L+ 
Sbjct: 209 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 268

Query: 180 KKILTR---ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA 236
           K I+      +D +G T L+ AA LG+ +I   +L    D     +  +  G+  +   A
Sbjct: 269 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD----PFIANKSGLRPVDFGA 324

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.1 bits (209), Expect = 7e-20
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 34/178 (19%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
            +     L  AA       V  L+          E+G +           N      +  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALL----------EAGAN-------PNAPNSYGRRPIQ- 50

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTT-LHAAVICNAEDVIKLLLEKKKILTRE 186
                  GS  +   +L +    +   P  LT  +H A      D + +L      L   
Sbjct: 51  ---VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-V 106

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVV 244
           RD  G   +  A  LGH ++   +  +             RG     + A++G   + 
Sbjct: 107 RDAWGRLPVDLAEELGHRDVARYLRAAAGGT---------RGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 103 LESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH 162
           +E              E     L  A   AA+G VE V  +LE   + +     G   + 
Sbjct: 1   MEPAAG-------SSMEPSADWLATA---AARGRVEEVRALLEAGANPNAPNSYGRRPIQ 50

Query: 163 AAVICNAEDVIKLLLEKK-KILTRERDRHGWTS-LHHAAYLGHSNITSMMLKSEDDKIVA 220
             ++ +A  V +LLL    +      D    T  +H AA  G  +   ++ ++     V 
Sbjct: 51  VMMMGSAR-VAELLLLHGAEP--NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR 107

Query: 221 LYKEDDRGMTALHLAASQGYERVVRRIIRH 250
               D  G   + LA   G+  V R +   
Sbjct: 108 ----DAWGRLPVDLAEELGHRDVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 24/164 (14%)

Query: 149 SADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITS 208
           +A          L  A      + ++ LLE         + +G   +      G + +  
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMMM-GSARVAE 61

Query: 209 MMLKSEDDKIVALYKEDDRGMT-ALHLAASQGYERVVRRIIRH--CPESYSIVDNRGWNA 265
           ++L    +   A    D   +T  +H AA +G+   +  + R     +   + D  G   
Sbjct: 62  LLLLHGAEPNCA----DPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLP 114

Query: 266 RHFAMVSLRG--GVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
              A     G   V + L                G+    + AA
Sbjct: 115 VDLA--EELGHRDVARYLRA--------AAGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 30/141 (21%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN---TAL 125
            N  G  P+ V        V E+L+            G +           +       +
Sbjct: 41  PNSYGRRPIQVMMMG-SARVAELLL----------LHGAE-------PNCADPATLTRPV 82

Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR 185
           H+A   A +G ++ +  +       D R   G   +  A      DV + L         
Sbjct: 83  HDA---AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG---- 135

Query: 186 ERDRHGWTSLHHAAYLGHSNI 206
                G       A  G S+I
Sbjct: 136 --GTRGSNHARIDAAEGPSDI 154

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 21/191 (10%), Positives = 47/191 (24%), Gaps = 37/191 (19%)

Query: 75  TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAK 134
             +  AA          L           E G +         +  K+  L++ +++   
Sbjct: 8   RTVSAAAMLGTYEDFLEL----------FEKGYEDKE------SVLKSNILYDVLRNNND 51

Query: 135 GSVEMVAEIL-ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR-----ERD 188
            +   ++  L         R  +G T           D+       K  L +        
Sbjct: 52  EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY 111

Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY---------KEDDRGMTALHLAASQG 239
           +     +    +    +        E   +  L           +D  G+TAL       
Sbjct: 112 KPYKIVVFKNIFNYFVDEN------EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 240 YERVVRRIIRH 250
               ++ +  +
Sbjct: 166 KPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 27/191 (14%)

Query: 120 EKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNA-----EDVIK 174
            +   +  A   A  G+ E   E+ E     + +     + +   V+ N        +  
Sbjct: 5   SEYRTVSAA---AMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 175 LLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED--DKIVALYKEDDRGMTAL 232
            L+ K     + R + G T        G ++IT      +   +K   +          +
Sbjct: 60  FLINKG-ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

Query: 233 HLAASQGY------ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPY 286
                  +        + + I         I D  G  A  F     +   LK + +   
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED--- 175

Query: 287 VISLIHGRDKN 297
                + +  N
Sbjct: 176 -----YIKKYN 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 21/170 (12%), Positives = 40/170 (23%), Gaps = 30/170 (17%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEK--KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKS 213
               T+ AA +    +    L EK  +   +  +    +  L +        I+  ++  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 214 EDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSI----------VDNRGW 263
             D    +      G T        G   +         E   I          +     
Sbjct: 65  GAD----IKSRTKEGTTLFFPLFQGGGNDITGTT-----ELCKIFLEKGADITALYKPYK 115

Query: 264 NARHFAMVSLRGGVLKSLLENPYVISLIHG------RDKNGNTPLHVLAA 307
                        V ++ +   Y +           +DK G T L     
Sbjct: 116 IVVFKN--IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE-FVK 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 21/157 (13%), Positives = 37/157 (23%), Gaps = 28/157 (17%)

Query: 69  VNDKGDTPLHVA----AKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTA 124
            +      L+             +   LI            G D     +    +E  T 
Sbjct: 34  ESVLKSNILYDVLRNNNDEARYKISMFLI----------NKGAD-----IKSRTKEGTTL 78

Query: 125 LHEAVQS---AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAED------VIKL 175
                Q       G+ E+    LE               +   +     D      + KL
Sbjct: 79  FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138

Query: 176 LLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLK 212
           +  +  +    +D+ G T+L             MM  
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRH 85
           ++        V+  NI +    E       + I       LL  +  G T L    +C+ 
Sbjct: 107 ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166

Query: 86  PAVVEVLIK 94
           P  ++++  
Sbjct: 167 PIALKMMED 175

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 32/202 (15%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
           ++  G+    +  +      ++ L    +                    +    T L  A
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLR-NYR--------------------DSYNRTPLMVA 42

Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRER 187
                 G    + +++EN    + +  +G T L  AV  N   + + LL K   +    +
Sbjct: 43  ---CMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV--NTK 97

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
           D  G T L  +   G+S ++  +L+   +        +  G T L +A+  G   +V+++
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANV----NDRNLEGETPLIVASKYGRSEIVKKL 153

Query: 248 IRHCPESYSIVDNRGWNARHFA 269
           +    +  S  D  G  A   A
Sbjct: 154 LELGADI-SARDLTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 83.6 bits (208), Expect = 2e-19
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           +    TPL VA        ++ L+          E+          +E  + E +TAL  
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLV----------ENFDK-------LEDKDIEGSTALIW 74

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRE 186
           A        + +  ++L    + + +   G T L  ++I    ++   LLE    +   +
Sbjct: 75  A---VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV--ND 129

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
           R+  G T L  A+  G S I   +L+   D        D  G+TA   A   G + V++ 
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADI----SARDLTGLTAEASARIFGRQEVIKI 185

Query: 247 IIRH 250
               
Sbjct: 186 FTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 66.3 bits (163), Expect = 4e-13
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 26/157 (16%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED 215
           +G          +    +  L   +       D +  T L  A  LG  N    ++++ D
Sbjct: 7   NGEIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLVENFD 59

Query: 216 DKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG 275
                   +D  G TAL  A       +  +++          D  G     ++++    
Sbjct: 60  KL----EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSIIFGYS 114

Query: 276 GVLKSLLENPYVISLIHG-----RDKNGNTPLHVLAA 307
            +   LLE        HG     R+  G TPL  +A+
Sbjct: 115 EMSYFLLE--------HGANVNDRNLEGETPLI-VAS 142

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.0 bits (139), Expect = 7e-10
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 22/114 (19%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           +  G TPL  +    +  +   L+          E G +       V   N E  T L  
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLL----------EHGAN-------VNDRNLEGETPLIV 140

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKK 181
           A   +  G  E+V ++LE       R   GLT   +A I   ++VIK+  E ++
Sbjct: 141 A---SKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.5 bits (130), Expect = 1e-08
 Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 29/129 (22%)

Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
             D++G            +     +    D              T L +A   G E  + 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYRDSY----------NRTPLMVACMLGMENAID 52

Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNG 298
           +++ +  +     D  G  A  +A        G+ + LL          G     +D +G
Sbjct: 53  KLVENFDKL-EDKDIEGSTALIWA--VKNNRLGIAEKLLS--------KGSNVNTKDFSG 101

Query: 299 NTPLHVLAA 307
            TPL   + 
Sbjct: 102 KTPLM-WSI 109

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 81.7 bits (203), Expect = 4e-19
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 23/149 (15%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           N +G+T LH+A+       VE L+          ++G D           +    T LHE
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLL----------QNGSD-------PNVKDHAGWTPLHE 49

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A      G +++V  +L++    +  G    + LH A      D++KLLL          
Sbjct: 50  A---CNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AV 105

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDD 216
           +  G   + +       ++  +  K+E  
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.9 bits (188), Expect = 4e-17
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
           N    T LH A   + KG +  V  +L+N    + +   G T LH A       V++LLL
Sbjct: 7   NHRGETLLHIA---SIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63

Query: 178 EKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA 236
           + K  +          + LH AA  GH +I  ++L     +       +  G+  +    
Sbjct: 64  QHKALV--NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR----NAVNIFGLRPVDYTD 117

Query: 237 SQGYERVVRRIIRH 250
            +  + ++    ++
Sbjct: 118 DESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 26/127 (20%)

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
            +  G T LH A+  G       +L++  D       +D  G T LH A + G+ +VV  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDP----NVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 247 IIRH--CPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKN 297
           +++H            +  +  H A  +  G   ++K LL         +G      +  
Sbjct: 62  LLQHKALVN---TTGYQNDSPLHDA--AKNGHVDIVKLLLS--------YGASRNAVNIF 108

Query: 298 GNTPLHV 304
           G  P+  
Sbjct: 109 GLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.0 bits (113), Expect = 8e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 23/94 (24%)

Query: 225 DDRGMTALHLAASQGYERVVRRIIRH--CPESYSIVDNRGWNARHFAMVSLRG--GVLKS 280
           + RG T LH+A+ +G    V  ++++   P    + D+ GW   H A     G   V++ 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEA--CNHGHLKVVEL 61

Query: 281 LLENPYVISLIHG-----RDKNGNTPLHVLAAAC 309
           LL+        H           ++PLH  AA  
Sbjct: 62  LLQ--------HKALVNTTGYQNDSPLH-DAAKN 86

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.4 bits (199), Expect = 8e-18
 Identities = 45/224 (20%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI 182
             L +A   A  G +E+V + ++          +G+T LH A+      ++  L+     
Sbjct: 23  VLLLDA---ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN 79

Query: 183 LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS--QGY 240
           +    D HGWT LH AA    + I    L      I A       G TA        +GY
Sbjct: 80  VN-SPDSHGWTPLHCAASCNDTVICMA-LVQHGAAIFA--TTLSDGATAFEKCDPYREGY 135

Query: 241 ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG------- 293
                 +     +S  ++++    A                 E    +S   G       
Sbjct: 136 ADCATYLADVE-QSMGLMNSGAVYALWDYS-----------AEFGDELSFREGESVTVLR 183

Query: 294 RDKNGNTPLHVLAAACRDSSYFIVPDS--DMYEAVNKQNTSVEH 335
           RD    T       A        VP +   ++  V  Q + V+H
Sbjct: 184 RDGPEETDWW---WAALHGQEGYVPRNYFGLFPRVKPQRSKVKH 224

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 35/189 (18%), Positives = 56/189 (29%), Gaps = 45/189 (23%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           N++G T LH A    + ++V+ LI           +G +       V   +    T LH 
Sbjct: 51  NEEGITALHNAICGANYSIVDFLI----------TAGAN-------VNSPDSHGWTPLHC 93

Query: 128 AVQSAAKGSVEMV-------AEILENCPSADHRGPDGLTTLHAAVIC--NAEDVIKLLLE 178
           A   A+     +        A I     S      DG T             D    L +
Sbjct: 94  A---ASCNDTVICMALVQHGAAIFATTLS------DGATAFEKCDPYREGYADCATYLAD 144

Query: 179 KK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
            +  +     +     +L   +      +     + E    V + + D    T    AA 
Sbjct: 145 VEQSM--GLMNSGAVYALWDYSAEFGDEL--SFREGES---VTVLRRDGPEETDWWWAAL 197

Query: 238 QGYERVVRR 246
            G E  V R
Sbjct: 198 HGQEGYVPR 206

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 30/201 (14%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQ 130
               L  AA      VV+  +          +   D           NEE  TALH A  
Sbjct: 21  PLVLLLDAALTGELEVVQQAV----------KEMND-------PSQPNEEGITALHNA-- 61

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRH 190
                +  +V  ++    + +     G T LH A  CN   +   L++    +       
Sbjct: 62  -ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 191 GWTSLHHAAYL--GHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
           G T+         G+++  + +   E      +   +   + AL    S  +   +    
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQS----MGLMNSGAVYALW-DYSAEFGDELSFRE 175

Query: 249 RHCPESYSIVDNRGWNARHFA 269
                     D        +A
Sbjct: 176 GESVTVLR-RDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 30/157 (19%)

Query: 173 IKLLLEK--KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT 230
           ++ +L K       R    +    L  AA  G   +    +K  +D      + ++ G+T
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP----SQPNEEGIT 56

Query: 231 ALHLAASQGYERVVRRIIRH--CPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPY 286
           ALH A       +V  +I       S    D+ GW   H A  +      +  +L++   
Sbjct: 57  ALHNAICGANYSIVDFLITAGANVNS---PDSHGWTPLHCA--ASCNDTVICMALVQ--- 108

Query: 287 VISLIHGRDKN------GNTPLHVLAAACRDSSYFIV 317
                HG          G T         R+      
Sbjct: 109 -----HGAAIFATTLSDGATAFE-KCDPYREGYADCA 139

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 12/127 (9%), Positives = 25/127 (19%), Gaps = 21/127 (16%)

Query: 73  GDTPLHVAAKCR--HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQ 130
           G T        R  +      L           +                 N+    A+ 
Sbjct: 121 GATAFEKCDPYREGYADCATYLA----------DVEQS---------MGLMNSGAVYALW 161

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRH 190
             +    + ++       +   R     T    A +   E  +           + +   
Sbjct: 162 DYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSK 221

Query: 191 GWTSLHH 197
                HH
Sbjct: 222 VKHHHHH 228

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.9 bits (188), Expect = 4e-17
 Identities = 27/141 (19%), Positives = 41/141 (29%), Gaps = 25/141 (17%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALH 126
           +    D  L  AA       V  L+          E+G D           N      + 
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLL----------EAGAD-------PNALNRFGRRPIQ 50

Query: 127 EAVQSAAKGSVEMVAEILENCPSADHRGPDGLTT-LHAAVICNAEDVIKLLLEKKKILTR 185
                   GS ++   +L +    +   P  LT  +H A      D + +L      L  
Sbjct: 51  ----VMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD- 105

Query: 186 ERDRHGWTSLHHAAYLGHSNI 206
             D  G   +  A   GH +I
Sbjct: 106 VCDAWGRLPVDLAEEQGHRDI 126

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 116 VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKL 175
           +     +  L  A   AA+G VE V ++LE     +     G   +   ++  +  V +L
Sbjct: 7   MLGGSSDAGLATA---AARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL 62

Query: 176 LLEKK-KILTRERDRHGWTS-LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH 233
           LL    +      D    T  +H AA  G  +   ++ ++       L   D  G   + 
Sbjct: 63  LLLHGAEP--NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR----LDVCDAWGRLPVD 116

Query: 234 LAASQGYERVVRRIIRH 250
           LA  QG+  + R +   
Sbjct: 117 LAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.7 bits (151), Expect = 6e-12
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 151 DHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSM 209
              G      L  A      + ++ LLE          +R G   +      G + +  +
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADP--NALNRFGRRPIQVMMM-GSAQVAEL 62

Query: 210 MLKSEDDKIVALYKEDDRGMT-ALHLAASQGYERVVRRIIRH--CPESYSIVDNRGWNAR 266
           +L    +   A    D   +T  +H AA +G+   +  + R     +   + D  G    
Sbjct: 63  LLLHGAEPNCA----DPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPV 115

Query: 267 HFAMVSLRG--GVLKSLLEN 284
             A    +G   + + L   
Sbjct: 116 DLA--EEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 24/115 (20%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN---TA 124
            +N  G  P+ V        V E+L+            G +           +       
Sbjct: 40  ALNRFGRRPIQVMMM-GSAQVAELLL----------LHGAE-------PNCADPATLTRP 81

Query: 125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
           +H+A   A +G ++ +  +       D     G   +  A      D+ + L   
Sbjct: 82  VHDA---AREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 25/95 (26%)

Query: 223 KEDDRGMTALHLAASQGYERVVRRIIRH--CPESYSIVDNRGWNARHFAMVSLRG--GVL 278
                    L  AA++G    VR+++     P     ++  G       M    G   V 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMM---MGSAQVA 60

Query: 279 KSLLENPYVISLIHG-----RDKNGNT-PLHVLAA 307
           + LL         HG      D    T P+H  AA
Sbjct: 61  ELLLL--------HGAEPNCADPATLTRPVH-DAA 86

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.4 bits (184), Expect = 1e-16
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 18/133 (13%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
               +     A      G ++ V + +      +     G   LH A  C   ++++ LL
Sbjct: 4   GSMCDKEFMWA---LKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 178 EK-----KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
            K             D+H  T L  A Y GH +   ++L    DK      +   G+TA 
Sbjct: 61  LKGADINAP------DKHHITPLLSAVYEGHVSCVKLLLSKGADK----TVKGPDGLTAF 110

Query: 233 HLAASQGYERVVR 245
               +Q  + +++
Sbjct: 111 EATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.8 bits (180), Expect = 4e-16
 Identities = 27/143 (18%), Positives = 41/143 (28%), Gaps = 29/143 (20%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALH 126
           +    D     A K      V+  +            G D       V    E     LH
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYV----------AKGED-------VNRTLEGGRKPLH 45

Query: 127 EAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK---KKIL 183
            A   A  G +E++  +L      +      +T L +AV       +KLLL K   K   
Sbjct: 46  YA---ADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-- 100

Query: 184 TRERDRHGWTSLHHAAYLGHSNI 206
              +   G T+           +
Sbjct: 101 --VKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 18/124 (14%), Positives = 30/124 (24%), Gaps = 26/124 (20%)

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
                   A   G  +     +   +D      +  + G   LH AA  G   ++  ++ 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDV----NRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 250 H--CPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLENPYVISLIHG-----RDKNGNT 300
                      D         A     G    +K LL          G     +  +G T
Sbjct: 62  KGADIN---APDKHHITPLLSA--VYEGHVSCVKLLLS--------KGADKTVKGPDGLT 108

Query: 301 PLHV 304
               
Sbjct: 109 AFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 51.6 bits (125), Expect = 1e-08
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 26/111 (23%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHE 127
            + G  PLH AA C    ++E L+            G D       +   +K+  T L  
Sbjct: 37  LEGGRKPLHYAADCGQLEILEFLL----------LKGAD-------INAPDKHHITPLLS 79

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLE 178
           AV    +G V  V  +L        +GPDGLT   A         IK LL+
Sbjct: 80  AVY---EGHVSCVKLLLSKGADKTVKGPDGLTAFEAT----DNQAIKALLQ 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 72.8 bits (180), Expect = 4e-16
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%)

Query: 122 NTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK- 180
            T LH A   A  G +E+V  +LE     + +  +G T LH A      +V+KLLLE   
Sbjct: 3   RTPLHLA---ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 181 KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY 240
            +    +D++G T LH AA  GH  +  ++L++  D       +D  G T LHLAA  G+
Sbjct: 60  DV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGH 113

Query: 241 ERVVRRIIRH 250
             VV+ ++  
Sbjct: 114 LEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 72.4 bits (179), Expect = 6e-16
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 25/137 (18%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQ 130
           G TPLH+AA+  H  VV++L+          E+G D       V   ++   T LH A  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL----------EAGAD-------VNAKDKNGRTPLHLA-- 42

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDR 189
            A  G +E+V  +LE     + +  +G T LH A      +V+KLLLE    +    +D+
Sbjct: 43  -ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDK 99

Query: 190 HGWTSLHHAAYLGHSNI 206
           +G T LH AA  GH  +
Sbjct: 100 NGRTPLHLAARNGHLEV 116

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 64.7 bits (159), Expect = 3e-13
 Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 45/153 (29%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSE 214
           +G T LH A      +V+KLLLE    +    +D++G T LH AA  GH  +  ++L++ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 215 DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR 274
            D       +D  G T LHLAA  G+  VV+ ++             G +          
Sbjct: 59  ADV----NAKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GAD---------- 93

Query: 275 GGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
                           ++ +DKNG TPLH LAA
Sbjct: 94  ----------------VNAKDKNGRTPLH-LAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 57.7 bits (141), Expect = 1e-10
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 22/112 (19%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           +  G TPLH+AA+  H  VV++L+          E+G D       V   ++   T LH 
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLL----------EAGAD-------VNAKDKNGRTPLHL 74

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
           A   A  G +E+V  +LE     + +  +G T LH A      +V+KLLLE 
Sbjct: 75  A---ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.5 bits (174), Expect = 2e-15
 Identities = 38/133 (28%), Positives = 49/133 (36%), Gaps = 26/133 (19%)

Query: 69  VNDK-GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TAL 125
              K G+TPLH AAK  H   V+ L+            G D       V    K+  T L
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLL----------SKGAD-------VNARSKDGNTPL 46

Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILT 184
           H A   A  G  E+V  +L      + R  DG T  H A      +++KLL  K   +  
Sbjct: 47  HLA---AKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV-- 101

Query: 185 RERDRHGWTSLHH 197
             R        HH
Sbjct: 102 NARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.8 bits (167), Expect = 2e-14
 Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 44/149 (29%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSE 214
           DG T LH A      + +K LL K   +    R + G T LH AA  GH+ I  ++L   
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 215 DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR 274
            D           G T  HLA   G+  +V+ +              G +          
Sbjct: 66  ADV----NARSKDGNTPEHLAKKNGHHEIVKLLDAK-----------GAD---------- 100

Query: 275 GGVLKSLLENPYVISLIHGRDKNGNTPLH 303
                           ++ R    +   H
Sbjct: 101 ----------------VNARSWGSSHHHH 113

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 70.9 bits (175), Expect = 3e-15
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 10/130 (7%)

Query: 122 NTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK- 180
              L EA   A  G  + V  ++ N    + +   GLT L+ A      +++++LL+   
Sbjct: 15  GKKLLEA---ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 181 KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGY 240
            +     D  G+T LH AA++GH  I  ++LK   D       +D  G TA  ++   G 
Sbjct: 72  DV--NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV----NAQDKFGKTAFDISIGNGN 125

Query: 241 ERVVRRIIRH 250
           E +   + + 
Sbjct: 126 EDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.0 bits (165), Expect = 7e-14
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 25/138 (18%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHEAVQ 130
               L  AA+      V +L+           +G D       V   +E   T L+ A  
Sbjct: 14  LGKKLLEAARAGQDDEVRILM----------ANGAD-------VNAKDEYGLTPLYLA-- 54

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDR 189
             A G +E+V  +L+N    +     G T LH A      ++ ++LL+    +    +D+
Sbjct: 55  -TAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV--NAQDK 111

Query: 190 HGWTSLHHAAYLGHSNIT 207
            G T+   +   G+ ++ 
Sbjct: 112 FGKTAFDISIGNGNEDLA 129

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 61.6 bits (151), Expect = 5e-12
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 141 AEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHAA 199
           +          H G D    L  A     +D +++L+     +    +D +G T L+ A 
Sbjct: 4   SHHHH------HHGSDLGKKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPLYLAT 55

Query: 200 YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVD 259
             GH  I  ++LK+  D        D  G T LHLAA  G+  +   +++H  +  +  D
Sbjct: 56  AHGHLEIVEVLLKNGADV----NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQD 110

Query: 260 NRGWNARHFA 269
             G  A   +
Sbjct: 111 KFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 24/112 (21%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE--NEEKNTALHE 127
           ++ G TPL++A    H  +VEVL+          ++G D       V   +    T LH 
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLL----------KNGAD-------VNAVDAIGFTPLHL 86

Query: 128 AVQSAAKGSVEMVAEIL-ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLE 178
           A   A  G +E +AE+L ++    + +   G T    ++    ED+ ++L +
Sbjct: 87  A---AFIGHLE-IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.2 bits (163), Expect = 4e-14
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 11/98 (11%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEK---KKILTRERDRHGWTSLHHAAYLGHSNITSMMLK 212
           +G T LH A      +V+KLLLE           +D++G T LH AA  GH  +  ++L+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 213 SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
           +  D       +D  G T LHLAA  G+  VV+ ++  
Sbjct: 57  AGADV----NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.4 bits (135), Expect = 3e-10
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 22/109 (20%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHEAVQ 130
           G TPLH+AA+  H  VV++L+          E+G D       V  ++KN  T LH A  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL----------EAGAD-------VNAKDKNGRTPLHLA-- 42

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK 179
            A  G +E+V  +LE     + +  +G T LH A      +V+KLLLE 
Sbjct: 43  -ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 51.2 bits (124), Expect = 8e-09
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
           +G T LH AA  GH  +  ++L++  D       +D  G T LHLAA  G+  VV+ ++ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 250 HCPESYSIVDNRGWNARHFAMVSLRG--GVLKSLLEN 284
              +  +  D  G    H A  +  G   V+K LLE 
Sbjct: 57  AGADV-NAKDKNGRTPLHLA--ARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.4 bits (96), Expect = 7e-05
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 23/77 (29%)

Query: 70  NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHE 127
           +  G TPLH+AA+  H  VV++L+          E+G D       V  ++KN  T LH 
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLL----------EAGAD-------VNAKDKNGRTPLHL 74

Query: 128 AVQSAAKGSVEMVAEIL 144
           A   A  G +E V ++L
Sbjct: 75  A---ARNGHLE-VVKLL 87

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.2 bits (169), Expect = 3e-13
 Identities = 42/274 (15%), Positives = 73/274 (26%), Gaps = 55/274 (20%)

Query: 64  SLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNT 123
           S   +   K +    VAA     + ++ L          L S        + V   E   
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLL-------LTSDEI-----VKVIQAENYQ 130

Query: 124 ALHEAVQSAAKGSVEMVAEILENCPSADHRGP--DGLTTLHAAVICNAEDVIKLLLEKKK 181
           A   A   A  G + ++  + E  P+        +       A       V+  L E   
Sbjct: 131 AFRLA---AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 187

Query: 182 ILTRE-RDRHGWTSLHHAAYL-GHSNITSMMLKSEDDKIVALYKEDDRG----------- 228
                      + +   AA   GH N+ + +L        A   E + G           
Sbjct: 188 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 247

Query: 229 -------MTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGG---VL 278
                    A  L+   G   +V +              +G+      +          +
Sbjct: 248 VNRLKEMHDAFKLSNPDGVFDLVTK----------SECLQGFYMLRNLIRRNDEVLLDDI 297

Query: 279 KSLLENPYVISLIH--GRDKNGNTPLHVLAAACR 310
           + LL  P + +L        + N  L +   A R
Sbjct: 298 RFLLSIPGIKALAPTATIPGDANELLRL---ALR 328

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 19/173 (10%)

Query: 119 EEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVI---CNAEDVIKL 175
           E+    L        + + ++ ++  +       +G         A I    +A D + L
Sbjct: 61  EQVRQLLCLYYAHYNRNAKQLWSDAHK-------KGIKSEVICFVAAITGCSSALDTLCL 113

Query: 176 LLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA 235
           LL   +I+        + +   AA  GH ++ + + +    +I+A+ + +     A  LA
Sbjct: 114 LLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE--NYHAFRLA 170

Query: 236 ASQGYERVVRRIIRHCPESYSI-VDNRGWNARHFAMVSLRGG---VLKSLLEN 284
           A  G+  V+ R+    P   +  +    + A  +A  ++  G   V+  LL+ 
Sbjct: 171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA--AVGRGHHNVINFLLDC 221

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 32/248 (12%), Positives = 71/248 (28%), Gaps = 38/248 (15%)

Query: 20  IAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ-VNDKGDTPLH 78
           +  DE+V +   E        +A++  G       +  + E+ P+ ++  +  +      
Sbjct: 115 LTSDEIVKVIQAENYQAFR--LAAE-NG---HLHVLNRLCELAPTEIMAMIQAENYHAFR 168

Query: 79  VAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVE 138
           +AA+  H  V+  L           E        M+     E   A   A  +  +G   
Sbjct: 169 LAAENGHLHVLNRLC----------ELAPTEATAMI---QAENYYAFRWA--AVGRGHHN 213

Query: 139 MVAEILENCPSADHRGPDGLTTLHAAV---ICNAEDVIKLLLEK---------KKILTRE 186
           ++  +L+      +            V   I    + +K + +            ++T+ 
Sbjct: 214 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS 273

Query: 187 RDRHGWTSLHHAAYLGHSNITSMM--LKSEDDKIVALYKE--DDRGMTALHLAASQGYER 242
               G+  L +        +   +  L S                    L LA   G + 
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333

Query: 243 VVRRIIRH 250
               ++  
Sbjct: 334 ACALLLSI 341

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 132 AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRH 190
           ++       + ++     +   G D    L  A     +D +++L+     +    +D++
Sbjct: 2   SSHHHHHHSSGLVPR--GSH-MGSDLGKKLLEAARAGQDDEVRILMANGADV--AAKDKN 56

Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
           G T LH AA  GH  +  ++L++  D       +D  G TA  ++   G E +  
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADV----XAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 22/110 (20%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALH 126
           +       L  AA+      V +L+           +G D       V  ++KN  T LH
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILM----------ANGAD-------VAAKDKNGSTPLH 62

Query: 127 EAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLL 176
            A   A  G +E+V  +LE       +   G T    ++    ED+ ++L
Sbjct: 63  LA---ARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 24/132 (18%)

Query: 80  AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEM 139
            +   H      L+            G             +    L EA   A  G  + 
Sbjct: 1   GSSHHHHHHSSGLV----------PRGSH--------MGSDLGKKLLEA---ARAGQDDE 39

Query: 140 VAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KILTRERDRHGWTSLHHA 198
           V  ++ N      +  +G T LH A      +V+KLLLE    +    +D+ G T+   +
Sbjct: 40  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV--XAQDKFGKTAFDIS 97

Query: 199 AYLGHSNITSMM 210
              G+ ++  ++
Sbjct: 98  IDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 170 EDVIKLLLEKK-KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRG 228
                 L+ +   +            L  AA  G  +   +++ +  D       +D  G
Sbjct: 7   HHHSSGLVPRGSHM-----GSDLGKKLLEAARAGQDDEVRILMANGADV----AAKDKNG 57

Query: 229 MTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSL 281
            T LHLAA  G+  VV+ ++    +  +  D  G  A   ++ +    + + L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 57.7 bits (139), Expect = 9e-10
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 105 SGVDWIRWMLLVENEEKN-TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHA 163
            GVD    + L    E + TALH AV+S  + S+ +V  +++N  + D +   G T LH 
Sbjct: 152 DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211

Query: 164 AVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKS 213
             + +  + +KLLL + K      +  G T L  A  L H +   ++ ++
Sbjct: 212 CCLTDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 144 LENCPSADHRGPDGLTTLHAAVICNAEDVIKL--LLEKKKILTRERDRHGWTSLHHAAYL 201
           L       +      T LH AV       + +   L +      ++   G T+LH+    
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 202 GHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
            ++    ++L+ +      +   ++ G T L +A    +E     + 
Sbjct: 216 DNAECLKLLLRGKAS----IEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 19/118 (16%)

Query: 29  ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAV 88
                 T LH+ + S         +F    L      L +   KG T LH      +   
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDF----LVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 89  VEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEN 146
           +++L++                   + + NE   T L  A +   +   E++ + L  
Sbjct: 221 LKLLLR----------GKAS-----IEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
              +   LH AV+ A + S+ +V  I++N    D +  DG T LH A + N  D +KLLL
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 178 EKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDK 217
            K + L    +  G T+L  A    H     ++ +++   
Sbjct: 247 -KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 33/122 (27%)

Query: 35  TVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ-------VNDKGDTPLHVAAKCRHPA 87
            VLH    + +   + S   V+         ++Q           G+T LH AA    P 
Sbjct: 192 LVLH---LAVKVANQASLPLVD--------FIIQNGGHLDAKAADGNTALHYAALYNQPD 240

Query: 88  VVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC 147
            +++L+K                       NE   TAL  A +   K   E++ +     
Sbjct: 241 CLKLLLKGRALVG---------------TVNEAGETALDIARKKHHKECEELLEQAQAGT 285

Query: 148 PS 149
            +
Sbjct: 286 FA 287

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 5e-09
 Identities = 57/412 (13%), Positives = 127/412 (30%), Gaps = 108/412 (26%)

Query: 3   PDLYRDAAKGEIEPF--NEIAKDELVSI--ATHEKNTVLHVNIASQQEGERVSTEFVEGI 58
                +    +++    + ++K+E+  I  +    +  L +      + E +  +FVE +
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 59  LEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVEN 118
           L +    L+       +P+    + R P+++  +  + +++ R L +          V  
Sbjct: 87  LRINYKFLM-------SPIK--TEQRQPSMMTRM--YIEQRDR-LYNDNQVFA-KYNVSR 133

Query: 119 EEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGL--TTLHAAVICNAEDVIKLL 176
            +    L +A+         ++             G  G   T + A  +C +  V   +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLI-----------D-GVLGSGKTWV-ALDVCLSYKVQCKM 180

Query: 177 LEKKKILTRERDRHGWTSLHHAAYLGHSNITS---MMLKSEDDKIVALYKEDDRGMTALH 233
               KI         W +      L + N       ML+    +I   +       + + 
Sbjct: 181 --DFKIF--------WLN------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 234 LAASQGYERVVRRIIRH--CPESYSIVDNRGWNARHFAMVSLRGGVL-----KSLLE--- 283
           L         +RR+++         ++ N   NA+ +   +L   +L     K + +   
Sbjct: 225 LRIHSIQAE-LRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 284 --NPYVISLIHGRD--------------------------KNGNTPLHV--LAAACRD-- 311
                 ISL H                                N P  +  +A + RD  
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGL 341

Query: 312 --SSYFIVPDSDMYEAVNKQNTSVEHI----VRYGYPELEVIPSLLIINVII 357
                +   + D    + +  +S+  +     R  +  L V P     +  I
Sbjct: 342 ATWDNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPP----SAHI 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 43/288 (14%), Positives = 88/288 (30%), Gaps = 82/288 (28%)

Query: 62  CPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEK 121
           C  LL     K  T    AA   H ++    +     + + L      ++++     + +
Sbjct: 266 CKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYL-----DCR 314

Query: 122 NTAL-HEAVQSAAKGS---VEMVAEILENCPSA----DHRGPDGLTTLHAAVICNAEDVI 173
              L  E +      +   + ++AE + +  +      H   D LTT           +I
Sbjct: 315 PQDLPREVL----TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-----------II 359

Query: 174 KLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH 233
           +  L     L     R  +  L  + +   ++I +++L         ++ +         
Sbjct: 360 ESSLNV---LEPAEYRKMFDRL--SVFPPSAHIPTILL-------SLIWFDVI------- 400

Query: 234 LAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG 293
                  +  V  ++      YS+V+           +S+    L+  ++     +L H 
Sbjct: 401 -------KSDVMVVVNKL-HKYSLVE--KQPKES--TISIPSIYLELKVKLENEYAL-HR 447

Query: 294 RDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGY 341
              +     H       DS   I P  D Y           HI   G+
Sbjct: 448 SIVD-----HYNIPKTFDSDDLIPPYLDQY--------FYSHI---GH 479

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLL 176
             ++  T L    Q+ A  S+     +L+N  + +     G   LH A I     +  L 
Sbjct: 231 GGQDNATPLI---QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287

Query: 177 LEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSE 214
           L K+      RD  G   L  A    +++I +++  ++
Sbjct: 288 L-KRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-56  Score=396.57  Aligned_cols=331  Identities=22%  Similarity=0.286  Sum_probs=224.1

Q ss_pred             ChhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      .|+||+||..|+.++|++|++.+ +++..+..|.||||+|+..|+   .+++++|++    .+.+++.++..|.||||+|
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   87 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGH---TEVAKYLLQ----NKAKVNAKAKDDQTPLHCA   87 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTC---HHHHHHHHH----HTCCSSCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHh----CCCCCCCCCCCCCCHHHHH
Confidence            37899999999999999999987 567788899999999999999   888888887    3677888899999999999


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcc------------hhHHHHHHH------hhcccCCcHHHHHHHHHhCCcHHHHHH
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESG------------VDWIRWMLL------VENEEKNTALHEAVQSAAKGSVEMVAE  142 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~------------~~~~~~~~~------~~~~~~~t~l~~a~~~~~~~~~~~~~~  142 (358)
                      +..|+.++|++|+++|++++.....+            .+.+.+++.      ..+..|.||||+|+..   ++.+++++
T Consensus        88 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~  164 (437)
T 1n11_A           88 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY---GKVRVAEL  164 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT---TCHHHHHH
T ss_pred             HHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHc---CCHHHHHH
Confidence            99999999999999988765332222            222333332      2345677777777554   77777777


Q ss_pred             HHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccc
Q 037701          143 ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY  222 (358)
Q Consensus       143 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  222 (358)
                      |++.|++++..+..|.||||+|+..++.+++++|++.++. ....+..|.||||+|+..|+.+++++|++.+.+    ++
T Consensus       165 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~  239 (437)
T 1n11_A          165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS----AN  239 (437)
T ss_dssp             HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TT
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CC
Confidence            7777777777777777777777777777777777776665 344555666666666666666666666666543    44


Q ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHH
Q 037701          223 KEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL  302 (358)
Q Consensus       223 ~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL  302 (358)
                      ..+..|.||||+|+..|+.+++++|++.+++. +..+..|.||||+|+..++.+++++|+++|   ++++.++..|+|||
T Consensus       240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L  315 (437)
T 1n11_A          240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHG---VMVDATTRMGYTPL  315 (437)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHT---CCTTCCCSSCCCHH
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC---ccCCCCCCCCCCHH
Confidence            45555666666666666666666666554442 445555555555555555555555555555   55555555555555


Q ss_pred             HHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceee
Q 037701          303 HVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLI  352 (358)
Q Consensus       303 ~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~  352 (358)
                      |+|+..++..+ ++|++.|+|++.+|..|.||||+|+.. ++.+++++|+.
T Consensus       316 ~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~-g~~~iv~~Ll~  365 (437)
T 1n11_A          316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ-GHTDIVTLLLK  365 (437)
T ss_dssp             HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC-ChHHHHHHHHH
Confidence            55555555555 555555555555555555555555552 55555555553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.8e-55  Score=389.51  Aligned_cols=331  Identities=23%  Similarity=0.259  Sum_probs=294.3

Q ss_pred             ChhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      .|+||.|+..|+.+++++|++.+ .++..+..|.||||+|+..|+   .+++++|++.    +.+++..+..|.||||+|
T Consensus        48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A  120 (437)
T 1n11_A           48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH---TNMVKLLLEN----NANPNLATTAGHTPLHIA  120 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC---HHHHHHHHHH----TCCTTCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC---HHHHHHHHhC----CCCCCCCCCCCCcHHHHH
Confidence            47999999999999999999987 567788999999999999999   8888888773    677888888999999999


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcc------------hhHHHHHH------HhhcccCCcHHHHHHHHHhCCcHHHHHH
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESG------------VDWIRWML------LVENEEKNTALHEAVQSAAKGSVEMVAE  142 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~------------~~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~~~~  142 (358)
                      +..|+.+++++|++++++.......+            .+.+++++      +..+..|.||||+|+..   ++.+++++
T Consensus       121 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~  197 (437)
T 1n11_A          121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH---NNLDIVKL  197 (437)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT---TCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHH
Confidence            99999999999998877643322222            22334443      34567899999999765   99999999


Q ss_pred             HHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccc
Q 037701          143 ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY  222 (358)
Q Consensus       143 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  222 (358)
                      |++.|.+++..+..|.||||+|+..++.+++++|++.+.. .+..+..|.||||+|+..|+.+++++|++.+++    ++
T Consensus       198 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----~~  272 (437)
T 1n11_A          198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN----GN  272 (437)
T ss_dssp             HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----TT
T ss_pred             HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC----CC
Confidence            9999999999999999999999999999999999999987 567889999999999999999999999999855    67


Q ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHH
Q 037701          223 KEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL  302 (358)
Q Consensus       223 ~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL  302 (358)
                      ..+..|.||||+|+..|+.+++++|++++.+ ++.++..|.||||+|+..|+.+++++|+++|   ++++.+|..|+|||
T Consensus       273 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---ad~n~~~~~g~t~L  348 (437)
T 1n11_A          273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ---ADVNAKTKLGYSPL  348 (437)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT---CCTTCCCTTSCCHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC---CCCCCCCCCCCCHH
Confidence            7889999999999999999999999999776 5889999999999999999999999999998   89999999999999


Q ss_pred             HHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceee
Q 037701          303 HVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLI  352 (358)
Q Consensus       303 ~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~  352 (358)
                      |+|++.++..+ ++|++.|++++.+|..|+||+++|... +..+++++|..
T Consensus       349 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~-g~~~~~~~l~~  398 (437)
T 1n11_A          349 HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GYISVTDVLKV  398 (437)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-CcHHHHHHHHh
Confidence            99999999999 999999999999999999999999884 88888887743

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.2e-48  Score=332.37  Aligned_cols=287  Identities=17%  Similarity=0.153  Sum_probs=202.6

Q ss_pred             hhhhcccccCCchhhhhhhhhh-ccceecc-CCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE-LVSIATH-EKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      ++|+.||++|++++|++||+.| +++.++. .|.||||+|+..|+   .+++++|++    .++.++.++..+.+|++.+
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~---~~iv~~Ll~----~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR---EDIVELLLR----HGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC---HHHHHHHHH----cCCchhhhccCCCchhHHH
Confidence            5677777777777777777776 4444443 47777777777777   777777766    4667777777777777777


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCC-------
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR-------  153 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~-------  153 (358)
                      +..+...++..+++.+++               ++..+..|.||+|+|+..   ++.+++++|++.|++++..       
T Consensus       100 ~~~~~~~~~~~~~~~~~~---------------~~~~d~~g~t~l~~A~~~---~~~~~~~~ll~~ga~~~~~~~~~~~~  161 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGAD---------------VNECDFYGFTAFMEAAVY---GKVKALKFLYKRGANVNLRRKTKEDQ  161 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCC---------------TTCBCTTCCBHHHHHHHT---TCHHHHHHHHHTTCCTTCCCCCC---
T ss_pred             HhcccchhhHHhhhccch---------------hhhhccCCCCHHHHHHHc---CcHHHHHHHHHcCCCcchhhcccccc
Confidence            777777777777777666               445677777777777554   7777777777777766543       


Q ss_pred             ---CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC----HHHHHHHhcCCCcccccccccCC
Q 037701          154 ---GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGH----SNITSMMLKSEDDKIVALYKEDD  226 (358)
Q Consensus       154 ---~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~  226 (358)
                         +..|.||||+|+..|+.+++++|+++.+...+.++..|.|+++.++..+.    ..++++|++.|++    ++.++.
T Consensus       162 ~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad----~n~~d~  237 (337)
T 4g8k_A          162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----VNVRGE  237 (337)
T ss_dssp             --CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC----TTCCCG
T ss_pred             ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC----CCCcCC
Confidence               33467777777777777777777765333356677777777776665443    2466777777744    666677


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHH
Q 037701          227 RGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA  306 (358)
Q Consensus       227 ~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~  306 (358)
                      .|.||||+|+..|+.++++.|++....+++.+|..|+||||+|+..|+.+++++|+++|   +++|.     .+|||+|+
T Consensus       238 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G---Ad~n~-----~~~L~~A~  309 (337)
T 4g8k_A          238 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTDC-----GDLVMTAR  309 (337)
T ss_dssp             GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS---CSSTT-----CCHHHHHH
T ss_pred             CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCC-----CCHHHHHH
Confidence            77777777777777777777777655556777777777777777777777777777777   55543     35777777


Q ss_pred             HhCCCCc-eeecCCcchHHHH
Q 037701          307 AACRDSS-YFIVPDSDMYEAV  326 (358)
Q Consensus       307 ~~~~~~~-~~Ll~~g~~~~~~  326 (358)
                      +.++..+ ++|+++||++|..
T Consensus       310 ~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          310 RNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HTTCHHHHHHHHHTTCCC---
T ss_pred             HcCCHHHHHHHHHCcCCCCCC
Confidence            7777777 7777777777653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.6e-47  Score=325.57  Aligned_cols=287  Identities=19%  Similarity=0.221  Sum_probs=253.5

Q ss_pred             eccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccC-CCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcch
Q 037701           29 ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVND-KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGV  107 (358)
Q Consensus        29 ~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  107 (358)
                      .+.+|.|+||.|++.|+   .++|++|++    .+++++.++. .|.||||+|+..|+.++|++|+++|++         
T Consensus        21 ~~~~~~t~L~~Av~~g~---~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~---------   84 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNED---VDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---------   84 (337)
T ss_dssp             CHHHHHHHHHHHHHTTC---HHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             CCCCCChHHHHHHHcCC---HHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc---------
Confidence            34568899999999999   888988887    3778887765 599999999999999999999999998         


Q ss_pred             hHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCccc---
Q 037701          108 DWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT---  184 (358)
Q Consensus       108 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~---  184 (358)
                            ++..+..+.++++.++..   +....+..+++.+.+++..+..|.||+|+|+..++.++++++++.|++..   
T Consensus        85 ------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~  155 (337)
T 4g8k_A           85 ------PVLRKKNGATPFILAAIA---GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR  155 (337)
T ss_dssp             ------TTCCCTTCCCHHHHHHHH---TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ------hhhhccCCCchhHHHHhc---ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh
Confidence                  446889999999999776   99999999999999999999999999999999999999999999987642   


Q ss_pred             ------ccccCCCCCHHHHHHHcCCHHHHHHHhc-CCCcccccccccCCCCCCHHHHHHHcCc----HHHHHHHHhhCCC
Q 037701          185 ------RERDRHGWTSLHHAAYLGHSNITSMMLK-SEDDKIVALYKEDDRGMTALHLAASQGY----ERVVRRIIRHCPE  253 (358)
Q Consensus       185 ------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~v~~Ll~~~~~  253 (358)
                            ...+..|.||||+|+..|+.+++++|++ .|    .+++..+..|.||++.++..+.    ..++++|++.+++
T Consensus       156 ~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g----ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad  231 (337)
T 4g8k_A          156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG----ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD  231 (337)
T ss_dssp             CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC----CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC
T ss_pred             ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC----CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC
Confidence                  1245678999999999999999999996 46    4478889999999998876543    4688999999876


Q ss_pred             CcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCc
Q 037701          254 SYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTS  332 (358)
Q Consensus       254 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t  332 (358)
                       ++.++..|+||||+|+..++.++++.|++..  +++++.+|..|+||||+|++.|+..+ ++|+++|+|++     +.+
T Consensus       232 -~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~--~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n-----~~~  303 (337)
T 4g8k_A          232 -VNVRGERGKTPLILAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD-----CGD  303 (337)
T ss_dssp             -TTCCCGGGCCHHHHHHHTTCHHHHHHHHTST--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST-----TCC
T ss_pred             -CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc--CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CCC
Confidence             5889999999999999999999999999863  27899999999999999999999999 99999999886     457


Q ss_pred             hhhHhhhCCCCcccccceeee
Q 037701          333 VEHIVRYGYPELEVIPSLLII  353 (358)
Q Consensus       333 ~l~~a~~~~~~~~~~~~L~~~  353 (358)
                      ||++|+.. ++.++|++|+..
T Consensus       304 ~L~~A~~~-~~~~iv~~Ll~~  323 (337)
T 4g8k_A          304 LVMTARRN-YDHSLVKVLLSH  323 (337)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHT
T ss_pred             HHHHHHHc-CCHHHHHHHHHC
Confidence            99999985 999999999864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-46  Score=316.18  Aligned_cols=262  Identities=19%  Similarity=0.243  Sum_probs=182.1

Q ss_pred             CCCceehhhhccccccccchHHHHHHHHhhCccchhcc-cCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHH
Q 037701           32 EKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQV-NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWI  110 (358)
Q Consensus        32 ~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  110 (358)
                      +|.||||.|+..|+   .+++++|++    .+.+++.. +..|.||||+|+..|+.+++++|+++|++            
T Consensus         4 ~g~~~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------   64 (285)
T 1wdy_A            4 EDNHLLIKAVQNED---VDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------------   64 (285)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred             ccchHHHHHHHcCC---HHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence            45677777777777   666666554    24445544 56677777777777777777777777666            


Q ss_pred             HHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccc---
Q 037701          111 RWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER---  187 (358)
Q Consensus       111 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~---  187 (358)
                         ++..+..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+.. ..   
T Consensus        65 ---~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~  137 (285)
T 1wdy_A           65 ---PVLRKKNGATPFLLAAIA---GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-LRRKT  137 (285)
T ss_dssp             ---TTCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCC
T ss_pred             ---CcccCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc-ccccc
Confidence               334566777777777665   77777777777777777777777777777777777777777777766532 22   


Q ss_pred             -------cCCCCCHHHHHHHcCCHHHHHHHhcC-CCcccccccccCCCCCCHHHHHHHcCc----HHHHHHHHhhCCCCc
Q 037701          188 -------DRHGWTSLHHAAYLGHSNITSMMLKS-EDDKIVALYKEDDRGMTALHLAASQGY----ERVVRRIIRHCPESY  255 (358)
Q Consensus       188 -------~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~v~~Ll~~~~~~~  255 (358)
                             +..|.||||+|+..|+.+++++|++. +.    +++..+..|.||||+|+..++    .+++++|++.+.+ +
T Consensus       138 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~  212 (285)
T 1wdy_A          138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA----DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-V  212 (285)
T ss_dssp             CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC----CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-S
T ss_pred             HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC----CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-C
Confidence                   55677777777777777777777765 53    356666777777777777776    6777777777655 3


Q ss_pred             ccccCCCCcHHHHHHHcCChhHHHHHhc-CccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHh
Q 037701          256 SIVDNRGWNARHFAMVSLRGGVLKSLLE-NPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVN  327 (358)
Q Consensus       256 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~  327 (358)
                      +.++..|.||||+|+..++.+++++|++ .+   ++++.+|..|.||||+|++.++.++ ++|++.|++++.+|
T Consensus       213 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g---~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHhccC---CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            6677777777777777777777777777 55   6677777777777777777777776 77777777766554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.3e-46  Score=324.59  Aligned_cols=289  Identities=19%  Similarity=0.159  Sum_probs=209.9

Q ss_pred             hhhhcccccCCchhhhhhhhhh--ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE--LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      ++|+.||+.|+.+.++.++...  .++..+..|.||||+|+..|+   .+++++|++    .+.+++.+|..|.||||+|
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR---VRIVQLLLQ----HGADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC---HHHHHHHHH----cCCCCCccCCCCCcHHHHH
Confidence            5788888888888888888764  345577788888888888888   777777766    4677788888888888888


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccH
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTT  160 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  160 (358)
                      +..|+.+++++|+++|++               ++..+..|.||||+|+..   ++.+++++|+++|++++..+..|.+|
T Consensus        99 ~~~g~~~iv~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~~~  160 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGAC---------------VNAMDLWQFTPLHEAASK---NRVEVCSLLLSHGADPTLVNCHGKSA  160 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHCCCHHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCccccCCCCcc
Confidence            888888888888888776               345677788888888654   88888888888888888888888888


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc--
Q 037701          161 LHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ--  238 (358)
Q Consensus       161 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~--  238 (358)
                      +++|+..+..+.+.+....             +++..++..+..+.++.++.....    ....+..|.||||+|+..  
T Consensus       161 l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~t~L~~A~~~~~  223 (351)
T 3utm_A          161 VDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEII----NFKQPQSHETALHCAVASLH  223 (351)
T ss_dssp             HHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCT----TCCCTTTCCCHHHHHHHCCS
T ss_pred             hHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcc----cccCCCCCCCHHHHHHHHhC
Confidence            8877666655555554321             234555666666666666655421    223455667777777776  


Q ss_pred             -CcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eee
Q 037701          239 -GYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFI  316 (358)
Q Consensus       239 -~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~L  316 (358)
                       +..+++++|++.+.+ ++.++..|.||||+|+..++.+++++|+++|   ++++.+|..|+||||+|+..++..+ ++|
T Consensus       224 ~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~n~~d~~g~t~L~~A~~~~~~~~v~~L  299 (351)
T 3utm_A          224 PKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQTALHRAALAGHLQTCRLL  299 (351)
T ss_dssp             TTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence             456777777777655 3666777777777777777777777777776   6777777777777777777777766 777


Q ss_pred             cCCcchHHHHhhCCCchhhHh
Q 037701          317 VPDSDMYEAVNKQNTSVEHIV  337 (358)
Q Consensus       317 l~~g~~~~~~~~~g~t~l~~a  337 (358)
                      ++.|+|++.+|..|+||+++|
T Consensus       300 l~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          300 LSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHS
T ss_pred             HHcCCCCCCcCCCCCChhhhh
Confidence            777777777777777777776

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-45  Score=308.35  Aligned_cols=262  Identities=19%  Similarity=0.185  Sum_probs=238.2

Q ss_pred             ChhhhcccccCCchhhhhhhhhh-cccee-ccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE-LVSIA-THEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHV   79 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~-~~~~~-~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~   79 (358)
                      +++|+.|++.|+.+++++|++.+ .++.. +..|.||||+|+..|+   .+++++|++    .+.+++..+..|.||||+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~g~t~L~~   78 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR---EDIVELLLR----HGADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCC---HHHHHHHHH----cCCCCcccCCCCCCHHHH
Confidence            47899999999999999999998 45554 7889999999999999   899998887    577888999999999999


Q ss_pred             HHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCC------
Q 037701           80 AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR------  153 (358)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~------  153 (358)
                      |+..|+.+++++|+++|++               ++..+..|.||||+|+..   ++.+++++|++.|++++..      
T Consensus        79 A~~~~~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~~  140 (285)
T 1wdy_A           79 AAIAGSVKLLKLFLSKGAD---------------VNECDFYGFTAFMEAAVY---GKVKALKFLYKRGANVNLRRKTKED  140 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---------------TTCBCTTCCBHHHHHHHT---TCHHHHHHHHHTTCCTTCCCCCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCC---------------CCccCcccCCHHHHHHHh---CCHHHHHHHHHhCCCcccccccHHH
Confidence            9999999999999999987               446788999999999765   9999999999999999887      


Q ss_pred             ----CCCCccHHHHHHhcCcHHHHHHHHHh-CCcccccccCCCCCHHHHHHHcCC----HHHHHHHhcCCCccccccccc
Q 037701          154 ----GPDGLTTLHAAVICNAEDVIKLLLEK-KKILTRERDRHGWTSLHHAAYLGH----SNITSMMLKSEDDKIVALYKE  224 (358)
Q Consensus       154 ----~~~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~  224 (358)
                          +..|.||||+|+..++.+++++|++. +.+ .+..+..|.||||+|+..++    .+++++|++.|.+    ++.+
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~----~~~~  215 (285)
T 1wdy_A          141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----VNVR  215 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC----SSCC
T ss_pred             HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC----CCCc
Confidence                77799999999999999999999998 555 67889999999999999999    8999999999954    7788


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCC
Q 037701          225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDK  296 (358)
Q Consensus       225 ~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  296 (358)
                      +..|.||||+|+..|+.+++++|++..+.+++.+|..|.||||+|+..++.+++++|+++|   ++++.+|.
T Consensus       216 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G---a~~~~~d~  284 (285)
T 1wdy_A          216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTDCGDL  284 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---SCSCCSSC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC---CCCCcccc
Confidence            9999999999999999999999999555557899999999999999999999999999999   88877763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.8e-46  Score=322.58  Aligned_cols=263  Identities=19%  Similarity=0.133  Sum_probs=224.3

Q ss_pred             eccCCCceehhhhccccccccchHHHHHHHHhhCccchhccc-CCCCchhHHHHhcCCcHHHHHHHH--------HHHhh
Q 037701           29 ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVN-DKGDTPLHVAAKCRHPAVVEVLIK--------FAKKQ   99 (358)
Q Consensus        29 ~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~--------~~~~~   99 (358)
                      .+..|.||||+|+..+    .++++++.      ...++..| ..|.||||+|+..|+.+++++|+.        .|++ 
T Consensus        90 ~~~~g~t~L~~Aa~~~----~~~~~~L~------~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-  158 (373)
T 2fo1_E           90 PEPESPIKLHTEAAGS----YAITEPIT------RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-  158 (373)
T ss_dssp             ----CCCHHHHHHHSS----SCCCSCCS------TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-
T ss_pred             CCCCCccHHHHHhcCC----chHHHHhc------cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-
Confidence            6888999999999954    45566653      24577777 789999999999999999998874        4544 


Q ss_pred             hHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHh
Q 037701          100 SRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK  179 (358)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~  179 (358)
                                    ++..|..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.
T Consensus       159 --------------vn~~d~~g~TpL~~A~~~---g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  221 (373)
T 2fo1_E          159 --------------VNAMDCDENTPLMLAVLA---RRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS  221 (373)
T ss_dssp             --------------TTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             --------------CcCCCCCCCCHHHHHHHc---ChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence                          557889999999999877   999999999999999999999999999999999999999999987


Q ss_pred             CC--cccccccCCCCCHHHHHHHcC---CHHHHHHHhcCCCcccc----cccccCCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          180 KK--ILTRERDRHGWTSLHHAAYLG---HSNITSMMLKSEDDKIV----ALYKEDDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       180 ~~--~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~----~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      +.  ...+..+..|.||||+|+..+   +.+++++|++.|.+...    ..+..+..|.||||+|+..|+.+++++|++.
T Consensus       222 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  301 (373)
T 2fo1_E          222 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE  301 (373)
T ss_dssp             HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH
T ss_pred             CccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh
Confidence            72  235678899999999999998   78999999999876322    1223577899999999999999999999998


Q ss_pred             CCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcch
Q 037701          251 CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDM  322 (358)
Q Consensus       251 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~  322 (358)
                      ++.+++.+|..|.||||+|+..|+.+++++|+++|   ++++.+|..|.||||+|+..++..+ ++|++.|++
T Consensus       302 ~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            86667899999999999999999999999999998   8999999999999999999999999 999998875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.4e-44  Score=299.92  Aligned_cols=263  Identities=14%  Similarity=0.145  Sum_probs=196.4

Q ss_pred             eccCCCceehhhhccccccccchHHHHHHHHhh-------CccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhH
Q 037701           29 ATHEKNTVLHVNIASQQEGERVSTEFVEGILEM-------CPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSR  101 (358)
Q Consensus        29 ~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~  101 (358)
                      ....|.|+||+|+..|+   .+.+..++..-..       -...++..|..|.||||+|+..|+.+++++|++.|++   
T Consensus        11 ~~~~~~~~lH~Aa~~g~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---   84 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGK---QGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA---   84 (285)
T ss_dssp             ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             cchHHHHHHHHHhhcCC---CCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC---
Confidence            45678999999999998   4444443221100       1223566888999999999999999999999999877   


Q ss_pred             hhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCC
Q 037701          102 ELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKK  181 (358)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~  181 (358)
                                  ++..+..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.
T Consensus        85 ------------~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  149 (285)
T 3d9h_A           85 ------------VNIITADHVSPLHEACLG---GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA  149 (285)
T ss_dssp             ------------SCEECTTCCCHHHHHHHT---TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ------------CCCcCCCCCCHHHHHHHC---CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCC
Confidence                        446888999999999765   99999999999999999999999999999999999999999999988


Q ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCC
Q 037701          182 ILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNR  261 (358)
Q Consensus       182 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~  261 (358)
                      +..  .+..|.||||+|+..|+.+++++|++.+.+    ++..+..|.||||+|+..|+.+++++|++.+++. + .+..
T Consensus       150 ~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~  221 (285)
T 3d9h_A          150 SVQ--PESDLASPIHEAARRGHVECVNSLIAYGGN----IDHKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKG  221 (285)
T ss_dssp             CSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTCC----TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBT
T ss_pred             CCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCC
Confidence            743  244589999999999999999999998854    7778889999999999999999999999998764 4 4788


Q ss_pred             CCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCC-cchHHH
Q 037701          262 GWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPD-SDMYEA  325 (358)
Q Consensus       262 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~-g~~~~~  325 (358)
                      |.||||+|+..++.+++++|+++|   ++++.+|..|+||||+|+.  +..+ ++|++. |+++..
T Consensus       222 g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          222 QDSPLHAVVRTASEELACLLMDFG---ADTQAKNAEGKRPVELVPP--ESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCGGGGSCT--TSHHHHHHHHHC------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHhcC--ccHHHHHHHHhhccCCCC
Confidence            999999999999999999999998   8899999999999999983  3444 666665 776543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.4e-44  Score=299.48  Aligned_cols=263  Identities=15%  Similarity=0.140  Sum_probs=205.3

Q ss_pred             cCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCC
Q 037701           70 NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPS  149 (358)
Q Consensus        70 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~  149 (358)
                      ...|.|+||+|+..|+.+.+..++..++........    ....+...+..|.||||+|+..   ++.+++++|++.|++
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~   84 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRL----LSNPLMGDAVSDWSPMHEAAIH---GHQLSLRNLISQGWA   84 (285)
T ss_dssp             ------------------------------CCSEEC----CCCTTCSSSCCSCCHHHHHHHT---TCHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhh----hhCcccCCCccCCCHHHHHHHc---CCHHHHHHHHHCCCC
Confidence            356899999999999987777777665442110000    0000345788999999999765   999999999999999


Q ss_pred             CCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCC
Q 037701          150 ADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGM  229 (358)
Q Consensus       150 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  229 (358)
                      ++.++..|.||||+|+..|+.+++++|++.+++ .+.++..|.||||+|+..|+.+++++|++.+.+    ++. +..|.
T Consensus        85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~-~~~g~  158 (285)
T 3d9h_A           85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS----VQP-ESDLA  158 (285)
T ss_dssp             SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSC-SCTTS
T ss_pred             CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC----CCC-CCCCC
Confidence            999999999999999999999999999999887 677899999999999999999999999999865    332 34599


Q ss_pred             CHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhC
Q 037701          230 TALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC  309 (358)
Q Consensus       230 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~  309 (358)
                      ||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++|   ++++. +..|.||||+|+..+
T Consensus       159 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~-~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          159 SPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESG---ADVNQ-GKGQDSPLHAVVRTA  233 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT---CCTTC-CBTTBCHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC---CCCCC-CCCCCCHHHHHHHcC
Confidence            999999999999999999999876 5889999999999999999999999999998   77774 889999999999999


Q ss_pred             CCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccceeee
Q 037701          310 RDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLII  353 (358)
Q Consensus       310 ~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  353 (358)
                      +..+ ++|++.|+|++.+|..|+||+++|+   ++.+++++|+..
T Consensus       234 ~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~---~~~~~~~~Ll~~  275 (285)
T 3d9h_A          234 SEELACLLMDFGADTQAKNAEGKRPVELVP---PESPLAQLFLER  275 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCGGGGSC---TTSHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHhc---CccHHHHHHHHh
Confidence            9999 9999999999999999999999998   347889988865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-42  Score=287.30  Aligned_cols=230  Identities=23%  Similarity=0.226  Sum_probs=174.9

Q ss_pred             hhcccCCCCchhHHHHhcC-------------CcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHH
Q 037701           66 LLQVNDKGDTPLHVAAKCR-------------HPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA  132 (358)
Q Consensus        66 ~~~~~~~g~t~Lh~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  132 (358)
                      ++.+|..|.||||+|+..|             +.+++++|++.|++..              ...+..|.||||+|+.. 
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~--------------~~~d~~g~t~L~~A~~~-   67 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH--------------NQTDRTGETALHLAARY-   67 (253)
T ss_dssp             ---------------------------------------------------------------CCCTTSCCHHHHHHHT-
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc--------------cccCCCCCcHHHHHHHc-
Confidence            4556666666666666655             8999999999998742              23578999999999765 


Q ss_pred             hCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhc
Q 037701          133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLK  212 (358)
Q Consensus       133 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  212 (358)
                        ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.++...+.++..|.||||+|+..++.+++++|++
T Consensus        68 --g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  145 (253)
T 1yyh_A           68 --SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN  145 (253)
T ss_dssp             --TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred             --CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence              999999999999999999999999999999999999999999999886678889999999999999999999999999


Q ss_pred             CCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCcccccccc
Q 037701          213 SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIH  292 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  292 (358)
                      .|.+    ++..+..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..++.+++++|+++|   ++++
T Consensus       146 ~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~  217 (253)
T 1yyh_A          146 SHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHF---ANRD  217 (253)
T ss_dssp             TTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTT
T ss_pred             cCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC---CCcc
Confidence            8854    777888999999999999999999999999876 4788999999999999999999999999998   8889


Q ss_pred             CCCCCCChHHHHHHHhCCCCc-eeecCCc
Q 037701          293 GRDKNGNTPLHVLAAACRDSS-YFIVPDS  320 (358)
Q Consensus       293 ~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g  320 (358)
                      .+|..|.|||++|++.++.++ ++|....
T Consensus       218 ~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          218 ITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999999888 6666543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.7e-43  Score=307.87  Aligned_cols=259  Identities=18%  Similarity=0.178  Sum_probs=220.9

Q ss_pred             ccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHH
Q 037701           63 PSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAE  142 (358)
Q Consensus        63 ~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~  142 (358)
                      ....+..|..|.||||+|+..|+.++|++|+++|++               ++..+..|.||||+|+..   ++.+++++
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---------------~~~~d~~g~t~L~~A~~~---g~~~~v~~   71 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS---------------PTIQNRFGCTALHLACKF---GCVDTAKY   71 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHH---CCHHHHHH
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------ccccCCCCCcHHHHHHHc---CCHHHHHH
Confidence            344566788899999999999999999999999887               446888999999999876   99999999


Q ss_pred             HHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHh----CCccccc-----------------ccCCCCCHHHHHHHc
Q 037701          143 ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK----KKILTRE-----------------RDRHGWTSLHHAAYL  201 (358)
Q Consensus       143 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~----~~~~~~~-----------------~~~~~~t~l~~a~~~  201 (358)
                      |++.|++++  +..|.||||+|+..++.+++++|++.    +.. .+.                 .+..|.||||+|+..
T Consensus        72 Ll~~g~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  148 (364)
T 3ljn_A           72 LASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL  148 (364)
T ss_dssp             HHHHCCCCC--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred             HHHCCCCcc--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence            999998655  35789999999999999999999998    554 233                 778899999999999


Q ss_pred             C--CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCC----cccccCCCCcHHHHHHHcCCh
Q 037701          202 G--HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES----YSIVDNRGWNARHFAMVSLRG  275 (358)
Q Consensus       202 ~--~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~a~~~~~~  275 (358)
                      |  +.+++++|++.|++    ++..+..|.||||+|+..|+.+++++|++.+++.    ++..+..|.||||+|+..|+.
T Consensus       149 g~~~~~~v~~Ll~~ga~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~  224 (364)
T 3ljn_A          149 GPEYLEMIKILVQLGAS----PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE  224 (364)
T ss_dssp             CGGGHHHHHHHHHHTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred             CCchHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCH
Confidence            9  99999999999854    7778899999999999999999999999988763    578899999999999999999


Q ss_pred             hHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHH------------HhhCCCchhhHhhhCCC
Q 037701          276 GVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEA------------VNKQNTSVEHIVRYGYP  342 (358)
Q Consensus       276 ~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~------------~~~~g~t~l~~a~~~~~  342 (358)
                      +++++|+++|   ++++.+|..|.||||+|+..++..+ ++|++.|++++.            .+..|+||++.|+.. +
T Consensus       225 ~~v~~Ll~~g---ad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~-~  300 (364)
T 3ljn_A          225 DVAMRFVEMG---IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD-P  300 (364)
T ss_dssp             HHHHHHHTTT---CCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCC-H
T ss_pred             HHHHHHHHcC---CCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhc-c
Confidence            9999999998   8999999999999999999999988 999999999877            556788888888764 5


Q ss_pred             Ccccccce
Q 037701          343 ELEVIPSL  350 (358)
Q Consensus       343 ~~~~~~~L  350 (358)
                      +.+.+..|
T Consensus       301 ~~~~v~~l  308 (364)
T 3ljn_A          301 SKQEVLQL  308 (364)
T ss_dssp             HHHHHHHH
T ss_pred             CHHHHHHH
Confidence            44444444

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.4e-43  Score=304.16  Aligned_cols=257  Identities=23%  Similarity=0.254  Sum_probs=229.4

Q ss_pred             ChhhhcccccCCchhhhhhhhhhccceec-cCCCceehhhhccccccccchHHHHHHH----HhhCccchhcccCCCCch
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDELVSIAT-HEKNTVLHVNIASQQEGERVSTEFVEGI----LEMCPSLLLQVNDKGDTP   76 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~g~t~   76 (358)
                      .++||.|+. |+.++++.|+... ++..+ ..|.||||+|+..|+   .+++++|+..    +-..+.+++..|..|.||
T Consensus        95 ~t~L~~Aa~-~~~~~~~~L~~~~-~n~~d~~~g~t~Lh~Aa~~g~---~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~Tp  169 (373)
T 2fo1_E           95 PIKLHTEAA-GSYAITEPITRES-VNIIDPRHNRTVLHWIASNSS---AEKSEDLIVHEAKECIAAGADVNAMDCDENTP  169 (373)
T ss_dssp             CCHHHHHHH-SSSCCCSCCSTTT-TTTCCCSSCCCHHHHHHCTTC---CSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred             ccHHHHHhc-CCchHHHHhcccc-ccccCCcCCCCHHHHHHHCCC---HHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCH
Confidence            478999999 5568999988765 77777 799999999999999   8888888631    224578899999999999


Q ss_pred             hHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcC---CCCCCC
Q 037701           77 LHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC---PSADHR  153 (358)
Q Consensus        77 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~---~~~~~~  153 (358)
                      ||+|+..|+.++|++|+++|++               ++..+..|.||||+|+..   ++.+++++|++.+   .+++..
T Consensus       170 L~~A~~~g~~~iv~~Ll~~ga~---------------~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~  231 (373)
T 2fo1_E          170 LMLAVLARRRRLVAYLMKAGAD---------------PTIYNKSERSALHQAAAN---RDFGMMVYMLNSTKLKGDIEEL  231 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC---------------SCCCCTTCCCHHHHHHHT---TCHHHHHHHTTSHHHHHTTSCC
T ss_pred             HHHHHHcChHHHHHHHHHCCCC---------------CcccCCCCCCHHHHHHHC---CCHHHHHHHHhcCccccChhhc
Confidence            9999999999999999999988               446888999999999765   9999999999988   799999


Q ss_pred             CCCCccHHHHHHhcC---cHHHHHHHHHhCCcccc-------cccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccc
Q 037701          154 GPDGLTTLHAAVICN---AEDVIKLLLEKKKILTR-------ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYK  223 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~---~~~~v~~Ll~~~~~~~~-------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  223 (358)
                      +..|.||||+|+..+   +.+++++|++.|++...       ..+..|.||||+|+..|+.+++++|++.+.   .+++.
T Consensus       232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~---~~~n~  308 (373)
T 2fo1_E          232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG---SNKDK  308 (373)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC---CCTTC
T ss_pred             CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC---CCccC
Confidence            999999999999998   89999999999987432       256789999999999999999999998763   34788


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          224 EDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       224 ~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      .+..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++++
T Consensus       309 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            899999999999999999999999999876 5889999999999999999999999999987

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-42  Score=292.09  Aligned_cols=251  Identities=20%  Similarity=0.165  Sum_probs=189.0

Q ss_pred             hhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHh
Q 037701           66 LLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILE  145 (358)
Q Consensus        66 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~  145 (358)
                      ++.+|..|.||||+|+..|+.++|++|+++|++...            ++..+..|.||||+|+..   ++.+++++|++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~   66 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY------------LDLQNDLGQTALHLAAIL---GEASTVEKLYA   66 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG------------GGCCCTTSCCHHHHHHHH---TCHHHHHHHHH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc------------ccccCCCCCCHHHHHHHc---CCHHHHHHHHH
Confidence            456788999999999999999999999999887432            346788999999999876   99999999999


Q ss_pred             cCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccc------------cccCCCCCHHHHHHHcCCHHH-HHHHhc
Q 037701          146 NCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR------------ERDRHGWTSLHHAAYLGHSNI-TSMMLK  212 (358)
Q Consensus       146 ~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~------------~~~~~~~t~l~~a~~~~~~~~-~~~Ll~  212 (358)
                      +|++++..+..|.||||+|+..++.+++++|++.++....            .....+.++++.++..+.... ...+..
T Consensus        67 ~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (282)
T 1oy3_D           67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED  146 (282)
T ss_dssp             TTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh
Confidence            9999999999999999999999999999999988765221            122345566666655544332 233333


Q ss_pred             CCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccC-CCCcHHHHHHHcCChhHHHHHhcCccccccc
Q 037701          213 SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDN-RGWNARHFAMVSLRGGVLKSLLENPYVISLI  291 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  291 (358)
                      .+    .+++..+..|.||||+|+..|+.+++++|++.+++. +..+. .|.||||+|+..++.+++++|+++|   +++
T Consensus       147 ~~----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g---ad~  218 (282)
T 1oy3_D          147 WR----LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAG---ADP  218 (282)
T ss_dssp             GG----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCT
T ss_pred             hh----hcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC---CCC
Confidence            33    567788999999999999999999999999998775 56664 5999999999999999999999998   899


Q ss_pred             cCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhh
Q 037701          292 HGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRY  339 (358)
Q Consensus       292 ~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~  339 (358)
                      +.+|..|+||||+|+..++..+ ++|+++|++++.+|..|.||+++|..
T Consensus       219 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             cccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            9999999999999999999888 99999999999999999999999965

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.9e-44  Score=310.37  Aligned_cols=268  Identities=18%  Similarity=0.126  Sum_probs=162.5

Q ss_pred             eccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchh
Q 037701           29 ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVD  108 (358)
Q Consensus        29 ~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  108 (358)
                      .|..|.||||+|+..|+   .+++++|++    .+.+++..|..|.||||+|+..|+.++|++|+++|++          
T Consensus        16 ~d~~g~t~L~~Aa~~g~---~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------   78 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQ---TDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV----------   78 (364)
T ss_dssp             CCHHHHHHHHHHHHHTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC----------
T ss_pred             cCCCCCCHHHHHHHcCC---HHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC----------
Confidence            55666666666666666   666666555    3555666666666666666666666666666666653          


Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhc----CCCCCC-----------------CCCCCccHHHHHHhc
Q 037701          109 WIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEN----CPSADH-----------------RGPDGLTTLHAAVIC  167 (358)
Q Consensus       109 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~----~~~~~~-----------------~~~~~~t~l~~a~~~  167 (358)
                             ..+..|.||||+|+..   ++.+++++|++.    |.+++.                 .+..|.||||+|+..
T Consensus        79 -------~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  148 (364)
T 3ljn_A           79 -------HSLWHGQKPIHLAVMA---NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL  148 (364)
T ss_dssp             -------CCCBTTBCHHHHHHHT---TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred             -------ccccCCCCHHHHHHHc---CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence                   2334566666666544   666666666666    555444                 555566666666666


Q ss_pred             C--cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCc-ccccccccCCCCCCHHHHHHHcCcHHHH
Q 037701          168 N--AEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD-KIVALYKEDDRGMTALHLAASQGYERVV  244 (358)
Q Consensus       168 ~--~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~v  244 (358)
                      |  +.+++++|++.|++ .+.++..|.||||+|+..|+.+++++|++.+++ ...+++..+..|.||||+|+..|+.+++
T Consensus       149 g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  227 (364)
T 3ljn_A          149 GPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA  227 (364)
T ss_dssp             CGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH
T ss_pred             CCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH
Confidence            6  66666666666655 455566666666666666666666666666543 2233555666666666666666666666


Q ss_pred             HHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCcccc---------ccccCCCCCCChHHHHHHHhCCCCc-e
Q 037701          245 RRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVI---------SLIHGRDKNGNTPLHVLAAACRDSS-Y  314 (358)
Q Consensus       245 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---------~~~~~~~~~g~tpL~~a~~~~~~~~-~  314 (358)
                      ++|++.+++ ++.+|..|.||||+|+..|+.+++++|++++...         ......+..|++|++.|+..+.... .
T Consensus       228 ~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~  306 (364)
T 3ljn_A          228 MRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL  306 (364)
T ss_dssp             HHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHH
T ss_pred             HHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHH
Confidence            666666555 3566666666666666666666666666665210         0011133456666666666554444 4


Q ss_pred             eecCCcchHHH
Q 037701          315 FIVPDSDMYEA  325 (358)
Q Consensus       315 ~Ll~~g~~~~~  325 (358)
                      .|+..+++...
T Consensus       307 ~ll~~~~~~~~  317 (364)
T 3ljn_A          307 QLLQEKLDEVV  317 (364)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            45555554433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2e-41  Score=279.73  Aligned_cols=230  Identities=22%  Similarity=0.247  Sum_probs=180.5

Q ss_pred             cceeccCCCceehhhhccc-------------cccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHH
Q 037701           26 VSIATHEKNTVLHVNIASQ-------------QEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVL   92 (358)
Q Consensus        26 ~~~~~~~~~t~l~~a~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L   92 (358)
                      ++.+|.+|.||||+|+..|             +   .+++++|++   .+....+..|..|.||||+|+..|+.++|++|
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~---~~~v~~Ll~---~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   76 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDA---PAVISDFIY---QGASLHNQTDRTGETALHLAARYSRSDAAKRL   76 (253)
T ss_dssp             -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCC---hHHHHHHHH---ccCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            5668999999999999987             6   777777765   34444456689999999999999999999999


Q ss_pred             HHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCC-CCCCCCCCCccHHHHHHhcCcHH
Q 037701           93 IKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCP-SADHRGPDGLTTLHAAVICNAED  171 (358)
Q Consensus        93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~  171 (358)
                      +++|++               ++..+..|.||||+|+..   ++.+++++|++.+. +++..+..|.||||+|+..++.+
T Consensus        77 l~~g~~---------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  138 (253)
T 1yyh_A           77 LEASAD---------------ANIQDNMGRTPLHAAVSA---DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG  138 (253)
T ss_dssp             HHTTCC---------------TTCCCTTSCCHHHHHHHH---TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSS
T ss_pred             HHcCCC---------------CCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHH
Confidence            999988               446889999999999877   99999999999987 89999999999999999999999


Q ss_pred             HHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhC
Q 037701          172 VIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       172 ~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      ++++|++.|++ .+.++..|.||||+|+..|+.+++++|++.|++    ++..+..|.||||+|+..|+.+++++|++.+
T Consensus       139 ~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          139 MLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             HHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999888 677899999999999999999999999999855    7778999999999999999999999999998


Q ss_pred             CCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          252 PESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       252 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      ++ ++.+|..|.||+++|+.+|+.+++++|.+..
T Consensus       214 a~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          214 AN-RDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             CC-ccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            87 4889999999999999999999999999865

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.2e-43  Score=304.09  Aligned_cols=282  Identities=20%  Similarity=0.172  Sum_probs=248.7

Q ss_pred             cceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhc
Q 037701           26 VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELES  105 (358)
Q Consensus        26 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  105 (358)
                      ....+..+.++||.|+..|+   .+.   +..++...+.+++..|..|.||||+|+..|+.++|++|+++|++       
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~---~~~---v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------   83 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGN---EEK---LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-------   83 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC---HHH---HHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------
T ss_pred             eeeeccccchhHHHHHHcCC---HHH---HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence            34467788999999999999   444   44445567888889999999999999999999999999999988       


Q ss_pred             chhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccc
Q 037701          106 GVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR  185 (358)
Q Consensus       106 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~  185 (358)
                              ++..+..|.||||+|+..   ++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++ .+
T Consensus        84 --------~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~  151 (351)
T 3utm_A           84 --------VHAKDKGGLVPLHNACSY---GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PT  151 (351)
T ss_dssp             --------TTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TT
T ss_pred             --------CCccCCCCCcHHHHHHHC---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-Cc
Confidence                    446888999999999765   999999999999999999999999999999999999999999999888 56


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcH
Q 037701          186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA  265 (358)
Q Consensus       186 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  265 (358)
                      ..+..|.||+++++..+..+.+++....                .++..++..+..+.++.++...... ...+..|.||
T Consensus       152 ~~~~~g~~~l~~a~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~  214 (351)
T 3utm_A          152 LVNCHGKSAVDMAPTPELRERLTYEFKG----------------HSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETA  214 (351)
T ss_dssp             CCCTTSCCHHHHCSSHHHHHHHHHHHHH----------------HHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCH
T ss_pred             cccCCCCcchHHHhhhhhHHHHHhhhcc----------------cHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCH
Confidence            7889999999999888777777665532                3678888999999999999886554 4477889999


Q ss_pred             HHHHHHc---CChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCC
Q 037701          266 RHFAMVS---LRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGY  341 (358)
Q Consensus       266 l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  341 (358)
                      ||+|+..   +..+++++|++.+   ++++.+|..|.||||+|+..++..+ ++|++.|++++.+|..|+|||++|+.. 
T Consensus       215 L~~A~~~~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~-  290 (351)
T 3utm_A          215 LHCAVASLHPKRKQVAELLLRKG---ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA-  290 (351)
T ss_dssp             HHHHHHCCSTTHHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-
T ss_pred             HHHHHHHhCccHHHHHHHHHHcC---CCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-
Confidence            9999999   5578999999999   8999999999999999999999999 999999999999999999999999985 


Q ss_pred             CCcccccceeee
Q 037701          342 PELEVIPSLLII  353 (358)
Q Consensus       342 ~~~~~~~~L~~~  353 (358)
                      ++.+++++|+..
T Consensus       291 ~~~~~v~~Ll~~  302 (351)
T 3utm_A          291 GHLQTCRLLLSY  302 (351)
T ss_dssp             TCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHc
Confidence            999999999865

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.7e-42  Score=281.15  Aligned_cols=232  Identities=21%  Similarity=0.223  Sum_probs=207.8

Q ss_pred             HHhhcccCCcHHHHHHHHHhCCcHHHHHHHHh----cCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccC
Q 037701          114 LLVENEEKNTALHEAVQSAAKGSVEMVAEILE----NCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR  189 (358)
Q Consensus       114 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~----~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~  189 (358)
                      ++..|..|.||||+|+..   ++.+++++|++    .+.+++..+..|.||||+|+..++.+++++|++.|.+ .+..+.
T Consensus         2 ~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~   77 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQ---GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDR   77 (241)
T ss_dssp             -----CTTCCHHHHHHHT---TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             ccccCCCCCcHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCC
Confidence            446899999999999776   99999999997    7899999999999999999999999999999999987 567789


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCccccc-CCCCcHHHH
Q 037701          190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVD-NRGWNARHF  268 (358)
Q Consensus       190 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~  268 (358)
                      .|.||||+|+..++.+++++|++.+.....+++..+..|.||||+|+..++.+++++|++.+.+. +..+ ..|.||||+
T Consensus        78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~  156 (241)
T 1k1a_A           78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIH  156 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHH
Confidence            99999999999999999999999987555568888999999999999999999999999998775 5566 789999999


Q ss_pred             HHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccc
Q 037701          269 AMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVI  347 (358)
Q Consensus       269 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  347 (358)
                      |+..++.+++++|+++|   ++++.+|..|.||||+|+..++..+ ++|++.|+|++.+|..|+||+++|+.. ++.+++
T Consensus       157 A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~-~~~~i~  232 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR-RVIDIL  232 (241)
T ss_dssp             HHHTTCHHHHHHHHHTT---CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH-HHHHHH
T ss_pred             HHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc-CcHHHH
Confidence            99999999999999998   8999999999999999999999999 999999999999999999999999884 899999


Q ss_pred             cceeeee
Q 037701          348 PSLLIIN  354 (358)
Q Consensus       348 ~~L~~~~  354 (358)
                      +.|...+
T Consensus       233 ~~l~~~~  239 (241)
T 1k1a_A          233 RGKATRP  239 (241)
T ss_dssp             TC-----
T ss_pred             hhhccCC
Confidence            9987643

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.3e-41  Score=273.50  Aligned_cols=222  Identities=22%  Similarity=0.309  Sum_probs=185.8

Q ss_pred             chhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHH
Q 037701           65 LLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEIL  144 (358)
Q Consensus        65 ~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll  144 (358)
                      +++..+..|.||||+|+..|+.+++++|+++|++               ++..+..|.||||+|+..   ++.+++++|+
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll   64 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN---------------IDTCSEDQRTPLMEAAEN---NHLEAVKYLI   64 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHT---TCHHHHHHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC---------------cCccCCCCCCHHHHHHHh---CCHHHHHHHH
Confidence            3556778888999999999999999999888877               445777888999998665   8888999999


Q ss_pred             hcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccccc
Q 037701          145 ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKE  224 (358)
Q Consensus       145 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  224 (358)
                      +.|++++..+..|.||||+|+..++.+++++|++.+....+..+..|.||||+|+..++.+++++|++.|.+    ++..
T Consensus        65 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~  140 (237)
T 3b7b_A           65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD----INIR  140 (237)
T ss_dssp             TTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCC
T ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCcc
Confidence            888888888888889999999888899999988888555677788888899888888888888888888854    6667


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHH
Q 037701          225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV  304 (358)
Q Consensus       225 ~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~  304 (358)
                      +..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..++.+++++|+++|   ++++.+|..|.||||+
T Consensus       141 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~  216 (237)
T 3b7b_A          141 DNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRD---SDVTLKNKEGETPLQC  216 (237)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT---CCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC---CCCCccCCCCCCHHHH
Confidence            88888888888888888888888888766 4778888888888888888888888888888   7888888888888888


Q ss_pred             HHHhCCCC
Q 037701          305 LAAACRDS  312 (358)
Q Consensus       305 a~~~~~~~  312 (358)
                      |+..++..
T Consensus       217 A~~~~~~~  224 (237)
T 3b7b_A          217 ASLNSQVW  224 (237)
T ss_dssp             SCTTCHHH
T ss_pred             HHHHHHHH
Confidence            88777543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.4e-41  Score=278.86  Aligned_cols=233  Identities=21%  Similarity=0.207  Sum_probs=140.8

Q ss_pred             hcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhc
Q 037701           67 LQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEN  146 (358)
Q Consensus        67 ~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~  146 (358)
                      +.+|..|.||||+|+..|+.+++++|++........           ++..+..|.||||+|+..   ++.+++++|++.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~   68 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----------LDIYNNLRQTPLHLAVIT---TLPSVVRLLVTA   68 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-----------SCCCCTTSCCHHHHHHHT---TCHHHHHHHHHT
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------CCcccccCCCHHHHHHHc---CCHHHHHHHHHc
Confidence            345666666666666666666666666532111000           334556666666666544   666666666666


Q ss_pred             CCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCc---ccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccc
Q 037701          147 CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI---LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYK  223 (358)
Q Consensus       147 ~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  223 (358)
                      |++++..+..|.||||+|+..++.+++++|++.+..   ..+..+..|.||||+|+..++.+++++|++.+.+    ++.
T Consensus        69 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~  144 (241)
T 1k1a_A           69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD----IDA  144 (241)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC----ccc
Confidence            666666666666666666666666666666666551   2445566666666666666666666666666643    444


Q ss_pred             cC-CCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHH
Q 037701          224 ED-DRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL  302 (358)
Q Consensus       224 ~~-~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL  302 (358)
                      .+ ..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|+++|   ++++.+|..|.|||
T Consensus       145 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl  220 (241)
T 1k1a_A          145 VDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSG---ADSSLKNCHNDTPL  220 (241)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCTT
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC---CCCCCcCCCCCCHH
Confidence            44 5566677777766667777776666554 3566666667777777777777777777666   66666666677777


Q ss_pred             HHHHHhCCCCc-eeecCCcc
Q 037701          303 HVLAAACRDSS-YFIVPDSD  321 (358)
Q Consensus       303 ~~a~~~~~~~~-~~Ll~~g~  321 (358)
                      |+|+..+..++ +.|.+.++
T Consensus       221 ~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          221 MVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             TTCSSHHHHHHHTC------
T ss_pred             HHHHhcCcHHHHhhhccCCC
Confidence            77666666655 55555543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-40  Score=271.34  Aligned_cols=226  Identities=23%  Similarity=0.218  Sum_probs=207.0

Q ss_pred             CCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC
Q 037701           71 DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA  150 (358)
Q Consensus        71 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~  150 (358)
                      ..+.+|||.|+..|+.++++++++.+...              ++..+..|.||||+|+..   ++.+++++|++.|+++
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~--------------~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~   66 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSL--------------ATRTDQDSRTALHWACSA---GHTEIVEFLLQLGVPV   66 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGG--------------GGCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCS
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhh--------------hhcCCCCCCCHHHHHHHc---CcHHHHHHHHHhCCCC
Confidence            45789999999999999999999987653              335788999999999887   9999999999999999


Q ss_pred             CCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCC
Q 037701          151 DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT  230 (358)
Q Consensus       151 ~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  230 (358)
                      +..+..|.||||+|+..++.+++++|++.+.+ .+.++..|.||||+|+..++.+++++|++.+.+    ++..+..|.|
T Consensus        67 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t  141 (231)
T 3aji_A           67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYDAT  141 (231)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCC
T ss_pred             CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCc
Confidence            99999999999999999999999999999888 567889999999999999999999999999854    7778899999


Q ss_pred             HHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCC
Q 037701          231 ALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACR  310 (358)
Q Consensus       231 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~  310 (358)
                      |||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++|   ++++.+|..|.|||++|+..++
T Consensus       142 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          142 AMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQG---ASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCSCCCCTTSCCHHHHSCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHhhHH
Confidence            99999999999999999999776 4889999999999999999999999999998   8899999999999999998888


Q ss_pred             CCc-eeecCCcch
Q 037701          311 DSS-YFIVPDSDM  322 (358)
Q Consensus       311 ~~~-~~Ll~~g~~  322 (358)
                      ..+ ++|++.|++
T Consensus       218 ~~i~~lL~~~~a~  230 (231)
T 3aji_A          218 LILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHcccccc
Confidence            887 888877765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.4e-42  Score=282.97  Aligned_cols=238  Identities=19%  Similarity=0.211  Sum_probs=175.0

Q ss_pred             cccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcC
Q 037701           68 QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC  147 (358)
Q Consensus        68 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~  147 (358)
                      .+|..+.+||+.|+..|+.++|++|++.|+........       .++..+..+.|||+.|+..  .....+++.|++.|
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~-------~~~~~~~~~~t~L~~a~~~--~~~~~~v~~Ll~~G   76 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAED-------TVSAADPEFCHPLCQCPKC--APAQKRLAKVPASG   76 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------CC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccc-------cccccCccCCCHHHHHHHh--CCHHHHHHHHHHCC
Confidence            45677889999999999999999999988764322111       1456788899999999754  23346889999999


Q ss_pred             CCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCC
Q 037701          148 PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDR  227 (358)
Q Consensus       148 ~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  227 (358)
                      +++|..+.+|.||||+|+..|+.+++++|++.+++ ...++..|.||++.|+..++.+++++|++.|++    ++.++..
T Consensus        77 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~----~n~~d~~  151 (269)
T 4b93_B           77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAK----PNKKDLS  151 (269)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SCCCCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCC----CCCCCCC
Confidence            99999999999999999999999999999999988 577899999999999999999999999999854    7888999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHH
Q 037701          228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA  307 (358)
Q Consensus       228 g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~  307 (358)
                      |.||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|+++|   ++++.+|..|+||||+|++
T Consensus       152 g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G---ad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          152 GNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHG---ASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             CCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT---CCSCCCCTTSCCSGGGSCT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHh
Confidence            99999999999999999999999876 5889999999999999999999999999999   8999999999999999987


Q ss_pred             hCCC-Cc-eeecCCcchH
Q 037701          308 ACRD-SS-YFIVPDSDMY  323 (358)
Q Consensus       308 ~~~~-~~-~~Ll~~g~~~  323 (358)
                      ++.. ++ +.|...++.+
T Consensus       228 ~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          228 NSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             TCHHHHHTTC--------
T ss_pred             CCcHHHHHHHHHHhchhh
Confidence            6641 12 4555555443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-40  Score=271.90  Aligned_cols=220  Identities=22%  Similarity=0.298  Sum_probs=204.3

Q ss_pred             HHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCC
Q 037701          114 LLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWT  193 (358)
Q Consensus       114 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t  193 (358)
                      ++..+..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|.. .+.++..|.|
T Consensus         4 ~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t   79 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEA---GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGST   79 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCC
T ss_pred             cccccCCCCCHHHHHHHc---CcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCc
Confidence            346788999999999877   999999999999999999999999999999999999999999999887 5678899999


Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcC
Q 037701          194 SLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL  273 (358)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  273 (358)
                      |||+|+..|+.+++++|++.+.   .+++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..+
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQ---MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTC---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHhCCC---CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCC
Confidence            9999999999999999999884   34677888999999999999999999999999876 4789999999999999999


Q ss_pred             ChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcc
Q 037701          274 RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELE  345 (358)
Q Consensus       274 ~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  345 (358)
                      +.+++++|+++|   ++++.+|..|.||||+|+..++..+ ++|++.|+|++.+|..|.||+++|+.. ++.+
T Consensus       156 ~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~  224 (237)
T 3b7b_A          156 CVDIAEILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN-SQVW  224 (237)
T ss_dssp             CHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTT-CHHH
T ss_pred             CHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHH-HHHH
Confidence            999999999999   8999999999999999999999988 999999999999999999999999874 6553

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.3e-41  Score=280.78  Aligned_cols=255  Identities=20%  Similarity=0.193  Sum_probs=187.5

Q ss_pred             cceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhc
Q 037701           26 VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELES  105 (358)
Q Consensus        26 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  105 (358)
                      ++..+..|.||||+|+..|+   .+++++|++. ......++.++..|.||||+|+..|+.+++++|+++|++       
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-------   70 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQH---EPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-------   70 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTC---HHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------
T ss_pred             CCccCCCCCcHHHHHHHcCC---HHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence            35678999999999999999   8889888873 222233788999999999999999999999999999988       


Q ss_pred             chhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCC-------------CCCCccHHHHHHhcCcHHH
Q 037701          106 GVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR-------------GPDGLTTLHAAVICNAEDV  172 (358)
Q Consensus       106 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~-------------~~~~~t~l~~a~~~~~~~~  172 (358)
                              ++..+..|.||||+|+..   ++.+++++|++.+++....             ...+.++++.+...+....
T Consensus        71 --------~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (282)
T 1oy3_D           71 --------VLVAERGGHTALHLACRV---RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE  139 (282)
T ss_dssp             --------SSCCCTTSCCHHHHHTTT---TCHHHHHHHSSSCCSSCCCC-------------------------------
T ss_pred             --------CCCCCCCCCCHHHHHHHc---CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchh
Confidence                    446888999999999654   9999999999998764321             1234556666655544333


Q ss_pred             HHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCC-CCCCHHHHHHHcCcHHHHHHHHhhC
Q 037701          173 IKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDD-RGMTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       173 v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      +..++.......+..+..|.||||+|+..|+.+++++|++.|++    ++..+. .|.||||+|+..|+.+++++|++.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  215 (282)
T 1oy3_D          140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD----LNKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (282)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence            33332222233567889999999999999999999999999865    666664 4999999999999999999999998


Q ss_pred             CCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCC
Q 037701          252 PESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACR  310 (358)
Q Consensus       252 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~  310 (358)
                      ++ ++.+|..|.||||+|+..++.+++++|+++|   ++++.++..|.|||++|.....
T Consensus       216 ad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          216 AD-PTARMYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT---CCCCCCC---------------
T ss_pred             CC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcC---CCcCcCCCcccccccccCCccc
Confidence            76 5889999999999999999999999999999   8999999999999999987653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.4e-40  Score=266.18  Aligned_cols=225  Identities=20%  Similarity=0.196  Sum_probs=203.2

Q ss_pred             cCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHH
Q 037701           31 HEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWI  110 (358)
Q Consensus        31 ~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  110 (358)
                      ..+.+|||.|+..|+   .+.++++   ++..+..++..+..|.||||+|+..|+.+++++|+++|++            
T Consensus         4 ~~~~~~l~~A~~~g~---~~~v~~l---l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------   65 (231)
T 3aji_A            4 CVSNIMICNLAYSGK---LDELKER---ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP------------   65 (231)
T ss_dssp             CCSSSHHHHHHHHTC---HHHHHHH---HHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------
T ss_pred             ccccchHHHHHHhCC---HHHHHHH---HHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC------------
Confidence            457899999999999   5555555   4457777888999999999999999999999999999887            


Q ss_pred             HHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCC
Q 037701          111 RWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRH  190 (358)
Q Consensus       111 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~  190 (358)
                         ++..+..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ .+.++..
T Consensus        66 ---~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~  138 (231)
T 3aji_A           66 ---VNDKDDAGWSPLHIAASA---GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY  138 (231)
T ss_dssp             ---SCCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             ---CCCcCCCCCCHHHHHHHc---CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence               446788999999999877   999999999999999999999999999999999999999999999887 5678899


Q ss_pred             CCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHH
Q 037701          191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAM  270 (358)
Q Consensus       191 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~  270 (358)
                      |.||||+|+..|+.+++++|++.+.+    ++.++..|.||||+|+..++.+++++|++++++ ++.+|..|.||+++|+
T Consensus       139 g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~  213 (231)
T 3aji_A          139 DATAMHRAAAKGNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAK  213 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCC----ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence            99999999999999999999999854    777889999999999999999999999999876 4889999999999999


Q ss_pred             HcCChhHHHHHhcCc
Q 037701          271 VSLRGGVLKSLLENP  285 (358)
Q Consensus       271 ~~~~~~~~~~Ll~~~  285 (358)
                      ..++.+++++|.+++
T Consensus       214 ~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          214 GGLGLILKRLAEGEE  228 (231)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHcccc
Confidence            999999999999876

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.1e-39  Score=262.54  Aligned_cols=210  Identities=20%  Similarity=0.222  Sum_probs=177.6

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcC--CCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC--PSA  150 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~--~~~  150 (358)
                      |.||||+|+..|+.+++++|++.++...              ...+..|.||||+|+..   ++.+++++|++.|  .++
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--------------~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~   64 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLL--------------LQKDQDGRIPLHWSVSF---QAHEITSFLLSKMENVNL   64 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGT--------------TCCCTTSCCHHHHHHHT---TCHHHHHHHHHTCTTCCG
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccc--------------ccCCCCCCCHHHHHHHc---CCHHHHHHHHhccccccc
Confidence            6899999999999999999999887642              23688899999999765   8999999999998  555


Q ss_pred             CC-CCCCCccHHHHHHhcCcHHHHHHHHHhC--CcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCC
Q 037701          151 DH-RGPDGLTTLHAAVICNAEDVIKLLLEKK--KILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDR  227 (358)
Q Consensus       151 ~~-~~~~~~t~l~~a~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  227 (358)
                      +. .+..|.||||+|+..++.+++++|++.+  .+ .+..+..|.||||+|+..++.+++++|++.|.+    ++..+..
T Consensus        65 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~  139 (228)
T 2dzn_A           65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS----VRIKDKF  139 (228)
T ss_dssp             GGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTT
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC----ccccCCC
Confidence            55 6778899999999999999999999887  44 567788899999999999999999999988854    6778888


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHh-cCccccccccCCCCCCChHHHHHH
Q 037701          228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLL-ENPYVISLIHGRDKNGNTPLHVLA  306 (358)
Q Consensus       228 g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~g~tpL~~a~  306 (358)
                      |.||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..++.+++++|+ ++|   ++++.+|..|.|||++|+
T Consensus       140 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g---a~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG---AEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---CCSCCBCTTSCBGGGGCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC---CCCCccCCCCCcHHHHHH
Confidence            9999999999999999999999885667888889999999999999999999999 777   788888889999999885


Q ss_pred             H
Q 037701          307 A  307 (358)
Q Consensus       307 ~  307 (358)
                      +
T Consensus       217 ~  217 (228)
T 2dzn_A          217 N  217 (228)
T ss_dssp             S
T ss_pred             H
Confidence            4

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=9.1e-40  Score=274.08  Aligned_cols=222  Identities=16%  Similarity=0.122  Sum_probs=126.7

Q ss_pred             hhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHh
Q 037701           66 LLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILE  145 (358)
Q Consensus        66 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~  145 (358)
                      ++.+|..|.||||+|+..|+.+++++|+++|++.+               ..  +|.||||+|+.   .++.+++++|++
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------~~--~g~t~L~~A~~---~g~~~~v~~Ll~   83 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN---------------LL--ENEFPLHQAAT---LEDTKIVKILLF   83 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS---------------CC--TTCCHHHHHTT---SSSCHHHHHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC---------------CC--CCCCHHHHHHH---cCCHHHHHHHHH
Confidence            45556666666666666666666666666655521               12  35566666633   356666666666


Q ss_pred             cCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCC-CCHHHHHHHcCCHHHHHHHhcCCCccccccccc
Q 037701          146 NCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHG-WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKE  224 (358)
Q Consensus       146 ~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  224 (358)
                      .|++++..+..|.||||+|+..++.+++++|++.|++ .+.++..| .||||+|+..|+.+++++|++.+++.      .
T Consensus        84 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~------~  156 (285)
T 3kea_A           84 SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST------F  156 (285)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT------C
T ss_pred             CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc------c
Confidence            6666666666666666666666666666666666555 34455555 56666666666666666666655431      1


Q ss_pred             CC-CCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcH-HHHHHHcCChhHHHHHhcCccccccccCCCCCCChHH
Q 037701          225 DD-RGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA-RHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL  302 (358)
Q Consensus       225 ~~-~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL  302 (358)
                      +. .|.||||+|+..|+.+++++|++.+++ ++.++..|+|| ||+|+..++.+++++|+++|   ++++.++.      
T Consensus       157 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g---ad~~~~~~------  226 (285)
T 3kea_A          157 DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD---INIYSANL------  226 (285)
T ss_dssp             CCSTHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC---BCSTTTTG------
T ss_pred             cccCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCCh------
Confidence            11 555666666666666666666665544 35555566665 66666666666666666665   55555542      


Q ss_pred             HHHHHhCCCCc-eeecCCcchHHH
Q 037701          303 HVLAAACRDSS-YFIVPDSDMYEA  325 (358)
Q Consensus       303 ~~a~~~~~~~~-~~Ll~~g~~~~~  325 (358)
                       .|+..++.++ ++|+++|++++.
T Consensus       227 -~a~~~~~~~iv~~Ll~~g~~~~~  249 (285)
T 3kea_A          227 -ENVLLDDAEIAKMIIEKHVEYKS  249 (285)
T ss_dssp             -GGGTTTCHHHHHHHHHHHHHHTT
T ss_pred             -hhhhcCCHHHHHHHHHcCCCCCC
Confidence             3344445555 666666665443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9e-40  Score=271.05  Aligned_cols=208  Identities=22%  Similarity=0.241  Sum_probs=141.0

Q ss_pred             hhhhcccccCCchhhhhhhhhhc---------cceeccCCCceehhhhccccccccc-hHHHHHHHHhhCccchhcccCC
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDEL---------VSIATHEKNTVLHVNIASQQEGERV-STEFVEGILEMCPSLLLQVNDK   72 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~---------~~~~~~~~~t~l~~a~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~   72 (358)
                      ++|+.||..|+.++|++||+.+.         .+..+..+.||||.|+..+.   .+ +++.|++    .+.+++.+|..
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~---~~~~v~~Ll~----~Gadvn~~d~~   85 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAP---AQKRLAKVPA----SGLGVNVTSQD   85 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC-----------------------------------------------CCCCTTCCCTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCC---HHHHHHHHHH----CCCCCCCcCCC
Confidence            57999999999999999998752         23466677888888887766   32 3444443    57778888888


Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH  152 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~  152 (358)
                      |.||||+|+..|+.++|++|++.|++               ++..+..|.||++.|+..   ++.++++.|++.|++++.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~---------------~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~g~~~n~  147 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGAN---------------AGARNADQAVPLHLACQQ---GHFQVVKCLLDSNAKPNK  147 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCSCC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCC---------------cCccCCCCCCcccccccc---ChHHHHHHHHHCCCCCCC
Confidence            88888888888888888888888776               335677788888888665   788888888888888888


Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHH
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL  232 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l  232 (358)
                      ++..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|++.|++    ++.+|..|+|||
T Consensus       148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad----~~~~d~~G~TpL  222 (269)
T 4b93_B          148 KDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGAS----VQVLNKRQRTAV  222 (269)
T ss_dssp             CCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCSG
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHH
Confidence            888888888888888888888888877776 566777778888888888888888888877744    666777777888


Q ss_pred             HHHHHcCc
Q 037701          233 HLAASQGY  240 (358)
Q Consensus       233 ~~a~~~~~  240 (358)
                      |+|++++.
T Consensus       223 ~~A~~~~~  230 (269)
T 4b93_B          223 DCAEQNSK  230 (269)
T ss_dssp             GGSCTTCH
T ss_pred             HHHHhCCc
Confidence            77776654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4e-38  Score=256.04  Aligned_cols=222  Identities=26%  Similarity=0.334  Sum_probs=194.2

Q ss_pred             CCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHH
Q 037701           33 KNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW  112 (358)
Q Consensus        33 ~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (358)
                      |+||||+|+..|+   .++++++++   .++...+..+..|.||||+|+..|+.+++++|+++|++.+            
T Consensus         2 g~t~L~~A~~~g~---~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------   63 (228)
T 2dzn_A            2 SNYPLHQACMENE---FFKVQELLH---SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN------------   63 (228)
T ss_dssp             -CCHHHHHHHTTC---HHHHHHHHH---HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC------------
T ss_pred             CccHHHHHHHhCC---HHHHHHHHh---cCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc------------
Confidence            7899999999999   777776655   4666667789999999999999999999999999985433            


Q ss_pred             HHHh-hcccCCcHHHHHHHHHhCCcHHHHHHHHhcC--CCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccC
Q 037701          113 MLLV-ENEEKNTALHEAVQSAAKGSVEMVAEILENC--PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR  189 (358)
Q Consensus       113 ~~~~-~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~--~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~  189 (358)
                       +.. .+..|.||||+|+..   ++.+++++|++.|  ++++..+..|.||||+|+..++.+++++|++.|.+ .+.++.
T Consensus        64 -~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~  138 (228)
T 2dzn_A           64 -LDDYPDDSGWTPFHIACSV---GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDK  138 (228)
T ss_dssp             -GGGCCCTTSCCHHHHHHHH---CCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCT
T ss_pred             -ccccCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCC
Confidence             223 778999999999877   9999999999998  88899999999999999999999999999999888 678899


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHH-hhCCCCcccccCCCCcHHHH
Q 037701          190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII-RHCPESYSIVDNRGWNARHF  268 (358)
Q Consensus       190 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll-~~~~~~~~~~~~~g~t~l~~  268 (358)
                      .|.||||+|+..|+.+++++|++.+.   .+++.++..|.||||+|+..|+.+++++|+ +.+.+ ++.+|..|.||+++
T Consensus       139 ~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~  214 (228)
T 2dzn_A          139 FNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDV  214 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTC---CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCc---ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHH
Confidence            99999999999999999999999983   337778999999999999999999999999 77665 58899999999999


Q ss_pred             HHHcCChhHHHHHhcC
Q 037701          269 AMVSLRGGVLKSLLEN  284 (358)
Q Consensus       269 a~~~~~~~~~~~Ll~~  284 (358)
                      |+..   ++.++|+++
T Consensus       215 A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          215 ALNE---QVKKFFLNN  227 (228)
T ss_dssp             CSST---THHHHHHTT
T ss_pred             HHHH---HHHHHHHhc
Confidence            9654   566777653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.4e-39  Score=271.48  Aligned_cols=245  Identities=14%  Similarity=0.092  Sum_probs=215.9

Q ss_pred             ccccCCchhhhhhhhhhccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcH
Q 037701            8 DAAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPA   87 (358)
Q Consensus         8 A~~~g~~~~~~~ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~   87 (358)
                      +++..+.+.+..+|..+.++..+..|.||||+|+..|+   .+++++|++    .+.+++..  +|.||||+|+..|+.+
T Consensus         6 ~i~~~~~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~--~g~t~L~~A~~~g~~~   76 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNN---VRLVCTLLN----AGALKNLL--ENEFPLHQAATLEDTK   76 (285)
T ss_dssp             TGGGCCHHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTC---HHHHHHHHH----TTGGGSCC--TTCCHHHHHTTSSSCH
T ss_pred             HHHhcCHHHHHHHHHhCCCCccCCCCCCHHHHHHHcCC---HHHHHHHHh----CCCCCCCC--CCCCHHHHHHHcCCHH
Confidence            56778888888888888999999999999999999999   888888877    46677766  4899999999999999


Q ss_pred             HHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCC-ccHHHHHHh
Q 037701           88 VVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDG-LTTLHAAVI  166 (358)
Q Consensus        88 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~  166 (358)
                      ++++|+++|++               ++..+..|.||||+|+..   ++.+++++|++.|++++..+..| .||||+|+.
T Consensus        77 ~v~~Ll~~ga~---------------~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~  138 (285)
T 3kea_A           77 IVKILLFSGLD---------------DSQFDDKGNTALYYAVDS---GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM  138 (285)
T ss_dssp             HHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHH
T ss_pred             HHHHHHHCCCC---------------CCCcCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Confidence            99999999988               446888999999999765   99999999999999999999999 799999999


Q ss_pred             cCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCH-HHHHHHcCcHHHHH
Q 037701          167 CNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTA-LHLAASQGYERVVR  245 (358)
Q Consensus       167 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~v~  245 (358)
                      .++.+++++|+++++....  ...|.||||+|+..|+.+++++|++.|    .+++..+..|.|| ||+|+..++.++++
T Consensus       139 ~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~n~~~~~g~t~~L~~A~~~~~~~~v~  212 (285)
T 3kea_A          139 LNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYM----TSTNTNNSLLFIPDIKLAIDNKDIEMLQ  212 (285)
T ss_dssp             TTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHH----HHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcC----CCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            9999999999999887422  238999999999999999999999998    4588899999998 99999999999999


Q ss_pred             HHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCC
Q 037701          246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDK  296 (358)
Q Consensus       246 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  296 (358)
                      +|+++|++. +..+       +.|+..++.+++++|+++|   ++++....
T Consensus       213 ~Ll~~gad~-~~~~-------~~a~~~~~~~iv~~Ll~~g---~~~~~~~~  252 (285)
T 3kea_A          213 ALFKYDINI-YSAN-------LENVLLDDAEIAKMIIEKH---VEYKSDSY  252 (285)
T ss_dssp             HHTTSCBCS-TTTT-------GGGGTTTCHHHHHHHHHHH---HHHTTCTT
T ss_pred             HHHHcCCCC-CCCC-------hhhhhcCCHHHHHHHHHcC---CCCCCccc
Confidence            999998764 5555       3567799999999999999   56544443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=260.88  Aligned_cols=228  Identities=19%  Similarity=0.161  Sum_probs=171.6

Q ss_pred             eeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcch
Q 037701           28 IATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGV  107 (358)
Q Consensus        28 ~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  107 (358)
                      ..+..|.|+|+.|+..|+   .+++++|++    .+.+++..+..|.||||+|+..|+.+++++|++.|++...      
T Consensus         4 ~~d~~~~~~l~~A~~~g~---~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------   70 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGI---YERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ------   70 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred             ccccccchHHHHHHHcCC---hHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh------
Confidence            356677888888888888   777776666    4566777777888888888888888888888887766321      


Q ss_pred             hHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccc
Q 037701          108 DWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER  187 (358)
Q Consensus       108 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~  187 (358)
                              ..+..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ .+..
T Consensus        71 --------~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~  138 (240)
T 3eu9_A           71 --------LGGDLNSTPLHWATRQ---GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMM  138 (240)
T ss_dssp             --------CBTTTTBCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC
T ss_pred             --------hcCCcCCChhHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-cccc
Confidence                    2344577888888766   788888888888888887777788888888888888888888877776 4566


Q ss_pred             cCCCCCHHHHHHHcCC-HHHHHHHhcCCCcccccccccCC-CCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcH
Q 037701          188 DRHGWTSLHHAAYLGH-SNITSMMLKSEDDKIVALYKEDD-RGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA  265 (358)
Q Consensus       188 ~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  265 (358)
                      +..|.||||+|+..++ .+++++|++.+.+    ++..+. .|.||||+|+..|+.+++++|++.+.+ ++.++..|.||
T Consensus       139 ~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  213 (240)
T 3eu9_A          139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVS----VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESA  213 (240)
T ss_dssp             CTTSCCHHHHHHHHCCSSTTHHHHHHTTCC----TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBH
T ss_pred             CCCCCcHHHHHHHhCChHHHHHHHHhcCCC----cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            7778888888886655 6777888877744    555554 677888888888888888888887655 46777788888


Q ss_pred             HHHHHHcCChhHHHHHhcCc
Q 037701          266 RHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       266 l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      +++|+..++.+++++|++.+
T Consensus       214 l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          214 LDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHcCcHHHHHHHHHhh
Confidence            88888888888888888766

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=8.4e-40  Score=277.00  Aligned_cols=252  Identities=23%  Similarity=0.264  Sum_probs=209.5

Q ss_pred             HHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCcc
Q 037701           80 AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLT  159 (358)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  159 (358)
                      ++..++.+.++.++............+.      ....+..+.|||+.|+..   ++.+++++|++.|++++..+..|.|
T Consensus         5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~t~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t   75 (299)
T 1s70_B            5 DAKQKRNEQLKRWIGSETDLEPPVVKRK------KTKVKFDDGAVFLAACSS---GDTEEVLRLLERGADINYANVDGLT   75 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSCCSCCCCS------CCCCEECHHHHHHHHHHH---TCHHHHHHHHHHCCCTTCBCTTCCB
T ss_pred             HHHHHHHHHHHHHHccccccccccccCc------ccccccCCccHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCC
Confidence            4555566666666655433221110000      112345678999999877   9999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcC
Q 037701          160 TLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG  239 (358)
Q Consensus       160 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~  239 (358)
                      |||+|+..|+.+++++|++.|++ .+..+..|.||||+|+..|+.+++++|++.|++    ++..+..|.||||+|+..+
T Consensus        76 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~  150 (299)
T 1s70_B           76 ALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAH----VGAVNSEGDTPLDIAEEEA  150 (299)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHCCSHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC----CCCcCCCCCCHHHHHHhcc
Confidence            99999999999999999999888 577899999999999999999999999999855    7778999999999999999


Q ss_pred             cHHHHHHHHhhCCCCc--------------------------ccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccC
Q 037701          240 YERVVRRIIRHCPESY--------------------------SIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHG  293 (358)
Q Consensus       240 ~~~~v~~Ll~~~~~~~--------------------------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  293 (358)
                      ..++++.++.....++                          ...+..|.||||+|+..|+.+++++|+++|   ++++.
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~d~~~  227 (299)
T 1s70_B          151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR---YDVNI  227 (299)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT---CCTTC
T ss_pred             hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC---CCCCC
Confidence            9999988776543332                          235578999999999999999999999999   89999


Q ss_pred             CCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccce
Q 037701          294 RDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSL  350 (358)
Q Consensus       294 ~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L  350 (358)
                      +|..|.||||+|+..++..+ ++|++.|+|++.+|..|.||+++|.+  ...+.++.|
T Consensus       228 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~l~~l  283 (299)
T 1s70_B          228 KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE--DILGYLEEL  283 (299)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS--GGGHHHHHH
T ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH--HHHHHHHHH
Confidence            99999999999999999999 99999999999999999999999965  334444433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2e-39  Score=274.74  Aligned_cols=263  Identities=19%  Similarity=0.199  Sum_probs=214.7

Q ss_pred             cccccCCchhhhhhhhhhc-cc---------eeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCch
Q 037701            7 RDAAKGEIEPFNEIAKDEL-VS---------IATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTP   76 (358)
Q Consensus         7 ~A~~~g~~~~~~~ll~~~~-~~---------~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~   76 (358)
                      .+++.+..+.++.++.... +.         ..+..|.||||.|+..|+   .+++++|++    .+.+++..+..|.||
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~g~t~   76 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGD---TEEVLRLLE----RGADINYANVDGLTA   76 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTC---HHHHHHHHH----HCCCTTCBCTTCCBH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCC---HHHHHHHHH----cCCCCcccCCCCCCH
Confidence            4677888888888888741 11         135567899999999999   888888876    367788999999999


Q ss_pred             hHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCC
Q 037701           77 LHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPD  156 (358)
Q Consensus        77 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~  156 (358)
                      ||+|+..|+.+++++|+++|++               ++..+..|.||||+|+..   ++.+++++|++.|++++..+..
T Consensus        77 L~~A~~~g~~~~v~~Ll~~ga~---------------~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~  138 (299)
T 1s70_B           77 LHQACIDDNVDMVKFLVENGAN---------------INQPDNEGWIPLHAAASC---GYLDIAEYLISQGAHVGAVNSE  138 (299)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCcCCC
Confidence            9999999999999999999988               446788999999999877   9999999999999999999999


Q ss_pred             CccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHH
Q 037701          157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA  236 (358)
Q Consensus       157 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~  236 (358)
                      |.||||+|+..++.+++++++.............+.+++.        ..+..++..+..   .....+..|.||||+|+
T Consensus       139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~---~~~~~~~~g~t~L~~A~  207 (299)
T 1s70_B          139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHI---NDVRHAKSGGTALHVAA  207 (299)
T ss_dssp             SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCC---CCCCCTTTCCCHHHHHH
T ss_pred             CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCc---chhhhcCCCCCHHHHHH
Confidence            9999999999999999999887655433333322222222        223344444432   23345678999999999


Q ss_pred             HcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhC
Q 037701          237 SQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC  309 (358)
Q Consensus       237 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~  309 (358)
                      ..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|   ++++.+|..|.||||+|++..
T Consensus       208 ~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          208 AKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENL---CDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             HHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCTTTSCCSGG
T ss_pred             HCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHHH
Confidence            99999999999998876 5889999999999999999999999999998   899999999999999996543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=253.74  Aligned_cols=233  Identities=18%  Similarity=0.185  Sum_probs=203.5

Q ss_pred             hhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHh
Q 037701           66 LLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILE  145 (358)
Q Consensus        66 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~  145 (358)
                      ++..|..|.||||.|+..|+.+++++|++.|++               ++..+..|.||||+|+..   ++.+++++|++
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~   63 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD---------------VRQPDKENVTLLHWAAIN---NRIDLVKYYIS   63 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCC---------------cCCCCCCCCCHHHHHHHh---CCHHHHHHHHH
Confidence            345678899999999999999999999999887               446788999999999775   99999999999


Q ss_pred             cCCCCCCCCC-CCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccccc
Q 037701          146 NCPSADHRGP-DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKE  224 (358)
Q Consensus       146 ~~~~~~~~~~-~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  224 (358)
                      .|.+++.... .|.||||+|+..++.+++++|++.|.+ .+..+..|.||||+|+..|+.+++++|++.+.+    ++..
T Consensus        64 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~----~~~~  138 (240)
T 3eu9_A           64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD----VDMM  138 (240)
T ss_dssp             TTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCC
T ss_pred             cCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC----cccc
Confidence            9998876554 489999999999999999999999887 567789999999999999999999999999854    7778


Q ss_pred             CCCCCCHHHHHHHcCc-HHHHHHHHhhCCCCcccccC-CCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHH
Q 037701          225 DDRGMTALHLAASQGY-ERVVRRIIRHCPESYSIVDN-RGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL  302 (358)
Q Consensus       225 ~~~g~t~l~~a~~~~~-~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL  302 (358)
                      +..|.||||+|+..+. .+++++|++.+.+. +..+. .|.||||+|+..++.+++++|+++|   ++++.+|..|.|||
T Consensus       139 ~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l  214 (240)
T 3eu9_A          139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAG---ANVDAQNIKGESAL  214 (240)
T ss_dssp             CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT---CCTTCBCTTSCBHH
T ss_pred             CCCCCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHH
Confidence            8999999999997665 88999999988764 66665 8999999999999999999999998   88999999999999


Q ss_pred             HHHHHhCCCCc-eeecCCcchHHH
Q 037701          303 HVLAAACRDSS-YFIVPDSDMYEA  325 (358)
Q Consensus       303 ~~a~~~~~~~~-~~Ll~~g~~~~~  325 (358)
                      ++|++.++..+ ++|++.|++...
T Consensus       215 ~~A~~~~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          215 DLAKQRKNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHHHHcCcHHHHHHHHHhhhccCc
Confidence            99999999988 999998887544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-39  Score=276.95  Aligned_cols=275  Identities=14%  Similarity=0.014  Sum_probs=192.9

Q ss_pred             ccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhc---c
Q 037701           30 THEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELES---G  106 (358)
Q Consensus        30 ~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~  106 (358)
                      +....+|+|.    ..   .+++++|++    .+++++..+..|.|+++     |+.++|++|+++|+++....-.   .
T Consensus        20 ~~~~~~~~~~----~~---~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~   83 (327)
T 1sw6_A           20 NDRTAGPIIT----FT---HDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLN   83 (327)
T ss_dssp             -----CCEEE----CC---TTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------
T ss_pred             ccccccchhh----hc---CchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhh
Confidence            3445555653    33   455667665    57778888888888888     7888888888888765431000   0


Q ss_pred             hhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC-CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccc
Q 037701          107 VDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH-RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR  185 (358)
Q Consensus       107 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~  185 (358)
                      .+.... -........+.+|.++..   ...++++.|++.|+++|. .+..|.||||+|+..|+.+++++|+++|++ .+
T Consensus        84 ~~~~~~-~~~~~~~~~~~~~~a~~~---~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n  158 (327)
T 1sw6_A           84 NDSSNR-NSEGGSSNQQQQHVSFDS---LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RL  158 (327)
T ss_dssp             ---------------------CHHH---HHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TT
T ss_pred             cccccc-cccccCCccchhHHHHHh---hHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CC
Confidence            000000 001122223445777654   677889999999999999 899999999999999999999999999888 56


Q ss_pred             cccCCCCCHHHHHHHcCC---HHHHHHHhcCCCcccccccccCCCCCCHHHHHHH----cCcHHHHHHHHhhC-------
Q 037701          186 ERDRHGWTSLHHAAYLGH---SNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS----QGYERVVRRIIRHC-------  251 (358)
Q Consensus       186 ~~~~~~~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~----~~~~~~v~~Ll~~~-------  251 (358)
                      .++..|.||||+|+..|+   .++++.|++.+.   .+++..+..|.||||+|+.    .|+.+++++|++.+       
T Consensus       159 ~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~---~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~  235 (327)
T 1sw6_A          159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK  235 (327)
T ss_dssp             BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG
T ss_pred             CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh---ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc
Confidence            889999999999999888   567777776652   2477788999999999998    88999999998873       


Q ss_pred             ------------CCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecC
Q 037701          252 ------------PESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVP  318 (358)
Q Consensus       252 ------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~  318 (358)
                                  ..+++.++..|.||||+|+.      +++|+++     +++.+|..|+||||+|++.++..+ ++|++
T Consensus       236 ~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~  304 (327)
T 1sw6_A          236 QNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNISIVDALLD  304 (327)
T ss_dssp             GGCCEEEC----------------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHH
T ss_pred             cchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                        33457888999999999985      7888874     578899999999999999999888 99999


Q ss_pred             CcchHHHHhhCCCchhhHhhh
Q 037701          319 DSDMYEAVNKQNTSVEHIVRY  339 (358)
Q Consensus       319 ~g~~~~~~~~~g~t~l~~a~~  339 (358)
                      .|+|++.+|..|+|||++|+.
T Consensus       305 ~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          305 YGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             TTCCTTCCCTTSCCGGGGTCC
T ss_pred             cCCCCcccCCCCCCHHHHHHh
Confidence            999999999999999999976

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-39  Score=278.06  Aligned_cols=268  Identities=14%  Similarity=0.018  Sum_probs=189.3

Q ss_pred             hhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHh
Q 037701            4 DLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAK   82 (358)
Q Consensus         4 ~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~   82 (358)
                      ....++.....+++++|++.+ .++..+..|.|+++     |+   .++++.|++.    +.+      .+.+++++|+.
T Consensus        22 ~~~~~~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~---~~~v~~Ll~~----g~~------~~~~~~~~a~~   83 (327)
T 1sw6_A           22 RTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQ---KMKLEAFLQR----LLF------PEIQEMPTSLN   83 (327)
T ss_dssp             ---CCEEECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HH---HHHHHHHHHH----HHC-----------------
T ss_pred             ccccchhhhcCchHHHHhhCCcccccCCCCCCcccC-----ch---hHHHHHHHHh----ccC------CccccchHhhh
Confidence            334455567788999999999 67779999999987     88   8888888773    332      23357777765


Q ss_pred             cCCc-------HHHHHHHHHHHhhhHhhhcchhHHHHH------HHh-hcccCCcHHHHHHHHHhCCcHHHHHHHHhcCC
Q 037701           83 CRHP-------AVVEVLIKFAKKQSRELESGVDWIRWM------LLV-ENEEKNTALHEAVQSAAKGSVEMVAEILENCP  148 (358)
Q Consensus        83 ~~~~-------~~v~~Ll~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~  148 (358)
                      ....       ..-..+... +    ......+....+      ++. .+..|.||||+|+..   ++.+++++|+++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~-a----~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~Ga  155 (327)
T 1sw6_A           84 NDSSNRNSEGGSSNQQQQHV-S----FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI---ANLELVKHLVKHGS  155 (327)
T ss_dssp             ---------------------C----HHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT---TCHHHHHHHHHTTC
T ss_pred             cccccccccccCCccchhHH-H----HHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc---CCHHHHHHHHHcCC
Confidence            4110       000000000 0    000001111111      233 788999999999765   99999999999999


Q ss_pred             CCCCCCCCCccHHHHHHhcCc---HHHHHHHHHhCCcccccccCCCCCHHHHHHH----cCCHHHHHHHhcCCCc-----
Q 037701          149 SADHRGPDGLTTLHAAVICNA---EDVIKLLLEKKKILTRERDRHGWTSLHHAAY----LGHSNITSMMLKSEDD-----  216 (358)
Q Consensus       149 ~~~~~~~~~~t~l~~a~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~~~~-----  216 (358)
                      +++.++..|.||||+|+..|+   .++++.|++.+....+.++..|.||||+|+.    .|+.+++++|++.+..     
T Consensus       156 d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~  235 (327)
T 1sw6_A          156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK  235 (327)
T ss_dssp             CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998   6888888888755578899999999999999    8999999999987421     


Q ss_pred             -----------ccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          217 -----------KIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       217 -----------~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                                 ...+++..+..|.||||.|+.      +++|++.   +++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       236 ~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G  306 (327)
T 1sw6_A          236 QNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYG  306 (327)
T ss_dssp             GGCCEEEC----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred             cchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                       125678889999999999986      8999998   36789999999999999999999999999999


Q ss_pred             cccccccCCCCCCChHHHHHHHhC
Q 037701          286 YVISLIHGRDKNGNTPLHVLAAAC  309 (358)
Q Consensus       286 ~~~~~~~~~~~~g~tpL~~a~~~~  309 (358)
                         ++++.+|..|+||||+|++.|
T Consensus       307 ---ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          307 ---ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ---CCTTCCCTTSCCGGGGTCC--
T ss_pred             ---CCCcccCCCCCCHHHHHHhcC
Confidence               999999999999999998654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.1e-38  Score=255.74  Aligned_cols=214  Identities=22%  Similarity=0.219  Sum_probs=189.2

Q ss_pred             CCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHH
Q 037701           84 RHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHA  163 (358)
Q Consensus        84 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  163 (358)
                      |+.+++++|++.|++...              ..+..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+
T Consensus         2 g~~~~i~~Ll~~g~~~~~--------------~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   64 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHN--------------QTDRTGETALHLAARY---SRSDAAKRLLEASADANIQDNMGRTPLHA   64 (223)
T ss_dssp             ---CCEETTEETTCCTTC--------------CCTTTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcHHHHHHHHHcCCCccc--------------ccCCCCCchHHHHHHc---CCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            567888888888877431              3478899999999765   99999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHH
Q 037701          164 AVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERV  243 (358)
Q Consensus       164 a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  243 (358)
                      |+..++.+++++|++.++...+..+..|.||||+|+..++.+++++|++.+.+    ++..+..|.||||+|+..++.++
T Consensus        65 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~  140 (223)
T 2f8y_A           65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNNVDA  140 (223)
T ss_dssp             HHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC----CcCcCCCCCcHHHHHHHcCCHHH
Confidence            99999999999999998866788899999999999999999999999998854    77788899999999999999999


Q ss_pred             HHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcch
Q 037701          244 VRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDM  322 (358)
Q Consensus       244 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~  322 (358)
                      +++|++.+.+ ++.++..|.||||+|+..++.+++++|+++|   ++++.+|..|.|||++|++.++.++ ++|++.|+.
T Consensus       141 v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          141 AVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC---CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            9999999766 4788999999999999999999999999998   8889999999999999999999888 999998874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.3e-37  Score=248.51  Aligned_cols=192  Identities=23%  Similarity=0.308  Sum_probs=100.3

Q ss_pred             cCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCC-
Q 037701           70 NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCP-  148 (358)
Q Consensus        70 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~-  148 (358)
                      |..|.||||+|+..|+.+++++|+++|++               ++..+..|.||||+|+..   ++.+++++|++.+. 
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~   83 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASAD---------------ANIQDNMGRTPLHAAVSA---DAQGVFQILIRNRAT   83 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHHHBTTS
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCC---------------CCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCC
Confidence            44455555555555555555555555444               223444555555555433   55555555555543 


Q ss_pred             CCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCC
Q 037701          149 SADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRG  228 (358)
Q Consensus       149 ~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g  228 (358)
                      +++..+..|.||||+|+..++.+++++|++.+.+ .+.++..|.||||+|+..|+.+++++|++.|.+    ++..+..|
T Consensus        84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g  158 (223)
T 2f8y_A           84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDMQNNRE  158 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTC
T ss_pred             CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCC
Confidence            4444455555555555555555555555555444 334445555555555555555555555555432    44445555


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          229 MTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       229 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      .||||+|+..++.+++++|++.+++ ++.++..|.||+++|+..++.+++++|+++|
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            5555555555555555555555443 2445555555555555555555555555555

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=5.8e-37  Score=250.42  Aligned_cols=219  Identities=21%  Similarity=0.239  Sum_probs=151.7

Q ss_pred             cccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcC
Q 037701           68 QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC  147 (358)
Q Consensus        68 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~  147 (358)
                      .+|..|.||||+|+..|+.+++++|++.+......           ++..+..|.||||+|+..   ++.+++++|++.|
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g   68 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----------LNFQNNLQQTPLHLAVIT---NQPEIAEALLGAG   68 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCC-----------CCCCCTTCCCHHHHHHHT---TCHHHHHCCCSCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHH-----------hhccCCCCCCHHHHHHHc---CCHHHHHHHHHcC
Confidence            46788999999999999999999988876542110           345777888888888665   8888888888888


Q ss_pred             CCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCc-----ccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccc
Q 037701          148 PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI-----LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY  222 (358)
Q Consensus       148 ~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  222 (358)
                      ++++..+..|.||||+|+..++.+++++|++.+..     .....+..|.||||+|+..|+.+++++|++.|++    ++
T Consensus        69 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~  144 (236)
T 1ikn_D           69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD----VN  144 (236)
T ss_dssp             CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC----TT
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CC
Confidence            88888888888888888888888888888887753     2345566677777777777777777777777643    55


Q ss_pred             ccCC-CCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChH
Q 037701          223 KEDD-RGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTP  301 (358)
Q Consensus       223 ~~~~-~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tp  301 (358)
                      ..+. .|.||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..++.+++++|+++|.. .....++..|.||
T Consensus       145 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~-~~~~~~~~~~~~~  222 (236)
T 1ikn_D          145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE-NLQMLPESEDEES  222 (236)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG-GGSSCCCCCTTTC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchh-hhhcCCccchHHH
Confidence            5555 677777777777777777777777655 366677777777777777777777777777732 1112455566666


Q ss_pred             HHHHH
Q 037701          302 LHVLA  306 (358)
Q Consensus       302 L~~a~  306 (358)
                      .+.+.
T Consensus       223 ~~~~~  227 (236)
T 1ikn_D          223 YDTES  227 (236)
T ss_dssp             CCCC-
T ss_pred             Hhhhc
Confidence            54443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2e-35  Score=240.68  Aligned_cols=191  Identities=23%  Similarity=0.289  Sum_probs=126.9

Q ss_pred             CCCchhHHHHhcCCcHHHHHHHHH-HHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC
Q 037701           72 KGDTPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA  150 (358)
Q Consensus        72 ~g~t~Lh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~  150 (358)
                      .|.||||+|+..|+.+++++|++. |++               ++..+..|.||||+|+..   ++.+++++|++.|+++
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~---------------~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~   63 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE---------------VHQRGAMGETALHIAALY---DNLEAAMVLMEAAPEL   63 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC---------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHCGGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC---------------cccCCCCCCCHHHHHHHc---CCHHHHHHHHHcCchh
Confidence            367777777777777777777776 555               335667777777777554   7777777777777665


Q ss_pred             -----CCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccC-------------CCCCHHHHHHHcCCHHHHHHHhc
Q 037701          151 -----DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR-------------HGWTSLHHAAYLGHSNITSMMLK  212 (358)
Q Consensus       151 -----~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~Ll~  212 (358)
                           +..+..|.||||+|+..++.+++++|++.|++. +.++.             .|.||||+|+..|+.+++++|++
T Consensus        64 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  142 (232)
T 2rfa_A           64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE  142 (232)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH
T ss_pred             ccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence                 455566777777777777777777777776663 23322             56666666666666666666666


Q ss_pred             CCCcccccccccCCCCCCHHHHHHHcCcHHHH----HHHHhhCCCCc-----ccccCCCCcHHHHHHHcCChhHHHHHhc
Q 037701          213 SEDDKIVALYKEDDRGMTALHLAASQGYERVV----RRIIRHCPESY-----SIVDNRGWNARHFAMVSLRGGVLKSLLE  283 (358)
Q Consensus       213 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v----~~Ll~~~~~~~-----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  283 (358)
                      .|++    ++.++..|.||||+|+..++.+++    ++|++.+++..     +.+|..|.||||+|+..|+.+++++|++
T Consensus       143 ~ga~----~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          143 HGAD----IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             TTCC----TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCC----CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            6633    555666666666666666666655    66666665432     3566666666666666666666666666


Q ss_pred             Cc
Q 037701          284 NP  285 (358)
Q Consensus       284 ~~  285 (358)
                      ++
T Consensus       219 ~g  220 (232)
T 2rfa_A          219 KR  220 (232)
T ss_dssp             HH
T ss_pred             cC
Confidence            66

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1e-36  Score=248.89  Aligned_cols=218  Identities=21%  Similarity=0.278  Sum_probs=185.3

Q ss_pred             eeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcch
Q 037701           28 IATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGV  107 (358)
Q Consensus        28 ~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  107 (358)
                      ..+.+|.||||+|+..|+   .+++++|++.....+.+++..+..|.||||+|+..|+.+++++|+++|++         
T Consensus         3 ~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------   70 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEE---KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---------   70 (236)
T ss_dssp             ----CCCCTTHHHHHTTC---SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---------
T ss_pred             cCCCCCCchhHHHHHcCC---hhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            368899999999999999   99998887765445557889999999999999999999999999999987         


Q ss_pred             hHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCC------CCCCCCCCccHHHHHHhcCcHHHHHHHHHhCC
Q 037701          108 DWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPS------ADHRGPDGLTTLHAAVICNAEDVIKLLLEKKK  181 (358)
Q Consensus       108 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~------~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~  181 (358)
                            ++..+..|.||||+|+..   ++.+++++|++.+.+      ++..+..|.||||+|+..++.+++++|++.|+
T Consensus        71 ------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  141 (236)
T 1ikn_D           71 ------PELRDFRGNTPLHLACEQ---GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA  141 (236)
T ss_dssp             ------SCCCCTTCCCHHHHHHHH---TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ------CCCcCCCCCCHHHHHHHc---CCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                  446788999999999877   999999999999876      46677889999999999999999999999998


Q ss_pred             cccccccC-CCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCc-cccc
Q 037701          182 ILTRERDR-HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESY-SIVD  259 (358)
Q Consensus       182 ~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~-~~~~  259 (358)
                      +. +.++. .|.||||+|+..|+.+++++|++.|++    ++..+..|.||||+|+..++.+++++|++++++.. ..++
T Consensus       142 ~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~  216 (236)
T 1ikn_D          142 DV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE  216 (236)
T ss_dssp             CT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCC
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCc
Confidence            84 55665 999999999999999999999999855    77889999999999999999999999999998653 3577


Q ss_pred             CCCCcHHHHHHH
Q 037701          260 NRGWNARHFAMV  271 (358)
Q Consensus       260 ~~g~t~l~~a~~  271 (358)
                      ..|.|+...+..
T Consensus       217 ~~~~~~~~~~~~  228 (236)
T 1ikn_D          217 SEDEESYDTESE  228 (236)
T ss_dssp             CCTTTCCCCC--
T ss_pred             cchHHHHhhhcc
Confidence            788887665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.3e-34  Score=230.47  Aligned_cols=194  Identities=20%  Similarity=0.191  Sum_probs=159.9

Q ss_pred             CCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC
Q 037701           71 DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA  150 (358)
Q Consensus        71 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~  150 (358)
                      ..+.||||.|+..|+.++++.|+..+...              ++..+..|.||||+|+..   ++.+++++|++.|+++
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~--------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~   65 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQ--------------VDEVDTEGNTPLNIAVHN---NDIEIAKALIDRGADI   65 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCC--------------TTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCC--------------CCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCC
Confidence            45788899999999998888888876521              445778888999998776   8888999999888888


Q ss_pred             CCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCC
Q 037701          151 DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT  230 (358)
Q Consensus       151 ~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  230 (358)
                      +..+..|.||||+|+..++.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+.   .+++..+..|.|
T Consensus        66 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~g~t  142 (201)
T 3hra_A           66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR---EDIDFQNDFGYT  142 (201)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC---CCTTCCCTTSCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCcCCCCCCCCC
Confidence            88888888999999888888898888876665577788888888888888888888888888873   236677888888


Q ss_pred             HHHHHHHcCc-----HHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          231 ALHLAASQGY-----ERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       231 ~l~~a~~~~~-----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      |||+|+..++     .+++++|++.+++ ++.+|..|.||||+|+..++.+++++|+++|
T Consensus       143 ~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          143 ALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHSSCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHhccchhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            8888888877     8888888888766 4778888888888888888888888888875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1e-34  Score=242.36  Aligned_cols=211  Identities=20%  Similarity=0.190  Sum_probs=135.8

Q ss_pred             ceeccCCCceehhhhccccccccchHHHHHHHHhhCccchh----cccCCCCchhHHHHhc---CCcHHHHHHHHHHHhh
Q 037701           27 SIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLL----QVNDKGDTPLHVAAKC---RHPAVVEVLIKFAKKQ   99 (358)
Q Consensus        27 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~   99 (358)
                      +..+..|.||||.|+..|+   .++++.|++.....+..++    ..+..|.||||+|+..   |+.++|++|+++|++.
T Consensus         7 ~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSN---CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             ----CCCHHHHHHHHHTTC---SSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             CCCCcccchHHHHHHHcCC---HHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            4478899999999999999   9999999886555555554    4588999999999986   9999999999999874


Q ss_pred             hHhhhcchhHHHHHHHh----hcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCC--------------CCccHH
Q 037701          100 SRELESGVDWIRWMLLV----ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGP--------------DGLTTL  161 (358)
Q Consensus       100 ~~~~~~~~~~~~~~~~~----~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~t~l  161 (358)
                      ...        ..+++.    .+..|.||||+|+..   ++.+++++|++.|++++..+.              .|.|||
T Consensus        84 ~~~--------~~~i~~~~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL  152 (273)
T 2pnn_A           84 DSL--------KQFVNASYTDSYYKGQTALHIAIER---RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL  152 (273)
T ss_dssp             TCH--------HHHHTCCCCSTTTTTCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHH
T ss_pred             cch--------hHHhhcccccccCCCCCHHHHHHHc---CCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHH
Confidence            321        111222    456788999999665   889999999999988888776              455555


Q ss_pred             HHHHhcCcHHHHHHHHH---hCCcccccccCCCCCHHHHHHHcCC---------HHHHHHHhcCCCccccc---ccccCC
Q 037701          162 HAAVICNAEDVIKLLLE---KKKILTRERDRHGWTSLHHAAYLGH---------SNITSMMLKSEDDKIVA---LYKEDD  226 (358)
Q Consensus       162 ~~a~~~~~~~~v~~Ll~---~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~~~---~~~~~~  226 (358)
                      |+|+..++.+++++|++   .|++ .+.++..|.||||+|+..++         .+++++|++.|++....   .+.++.
T Consensus       153 ~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~  231 (273)
T 2pnn_A          153 SLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR  231 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred             HHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC
Confidence            55555555555555555   4444 34455555555555555554         44555555544321000   012444


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhhCC
Q 037701          227 RGMTALHLAASQGYERVVRRIIRHCP  252 (358)
Q Consensus       227 ~g~t~l~~a~~~~~~~~v~~Ll~~~~  252 (358)
                      .|.||||+|+..|+.+++++|+++++
T Consensus       232 ~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          232 KGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            45555555555555555555555544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.9e-34  Score=228.57  Aligned_cols=192  Identities=22%  Similarity=0.215  Sum_probs=169.4

Q ss_pred             ccCCcHHHHHHHHHhCCcHHHHHHHHhcCC-CCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037701          119 EEKNTALHEAVQSAAKGSVEMVAEILENCP-SADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHH  197 (358)
Q Consensus       119 ~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  197 (358)
                      ..+.||||.|+..   ++.+.++.|++.+. +++..+..|.||||+|+..++.+++++|++.|++ .+.++..|.||||+
T Consensus         3 ~~~~~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~   78 (201)
T 3hra_A            3 TYEVGALLEAANQ---RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLY   78 (201)
T ss_dssp             CCCTTHHHHHHHT---TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             cccccHHHHHHHh---ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            4577999999665   99999999998876 8899999999999999999999999999999887 56788899999999


Q ss_pred             HHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC---
Q 037701          198 AAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR---  274 (358)
Q Consensus       198 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~---  274 (358)
                      |+..|+.+++++|++.+.   .+++..+..|.||||+|+..|+.+++++|++.++.+++.++..|.||||+|+..++   
T Consensus        79 A~~~~~~~~~~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~  155 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHAT---PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ  155 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSC---CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSH
T ss_pred             HHHcCCHHHHHHHHhccC---cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchh
Confidence            999999999999995443   34777888899999999999999999999999866678899999999999999888   


Q ss_pred             --hhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCc
Q 037701          275 --GGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDS  320 (358)
Q Consensus       275 --~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g  320 (358)
                        .+++++|+++|   ++++.+|..|.||||+|++.++.++ ++|+++|
T Consensus       156 ~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          156 LYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHCC---CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence              89999999998   8889999999999999999998888 8888776

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.4e-34  Score=239.24  Aligned_cols=219  Identities=16%  Similarity=0.115  Sum_probs=136.3

Q ss_pred             CCCceehhhhccccccccchHHHHHHHHhhCccchhc----ccCCCCchhHHHHhc---CCcHHHHHHHHHHHhhhHhhh
Q 037701           32 EKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ----VNDKGDTPLHVAAKC---RHPAVVEVLIKFAKKQSRELE  104 (358)
Q Consensus        32 ~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~~  104 (358)
                      .|+||||.|+..|+   .+.++.+++.+...+.+++.    .|..|.||||+|+..   |+.+++++|+++|++......
T Consensus         1 ~G~t~L~~A~~~g~---~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGV---PEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP   77 (256)
T ss_dssp             CCHHHHHHHHHHTC---GGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred             CCccHHHHHHHcCC---HHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh
Confidence            37899999999999   88777666655556777887    899999999999999   999999999999988532100


Q ss_pred             cchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCccc
Q 037701          105 SGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT  184 (358)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~  184 (358)
                      .    +.......+..|.||||+|+..   ++.+++++|++.|++++..+..+.++                     ...
T Consensus        78 ~----~~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~---------------------~~~  129 (256)
T 2etb_A           78 L----VNAQCTDEFYQGHSALHIAIEK---RSLQCVKLLVENGADVHLRACGRFFQ---------------------KHQ  129 (256)
T ss_dssp             G----GGCCCCSTTTTTCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCCSGGGS---------------------CCS
T ss_pred             h----cccccccccccCCCHHHHHHHc---CCHHHHHHHHHcCCCCCccccccccc---------------------ccc
Confidence            0    0000001346789999999765   89999999999999988887762210                     001


Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHhc---CCCcccccccccCCCCCCHHHHHHH--cCcHH-------HHHHHHhhCC
Q 037701          185 RERDRHGWTSLHHAAYLGHSNITSMMLK---SEDDKIVALYKEDDRGMTALHLAAS--QGYER-------VVRRIIRHCP  252 (358)
Q Consensus       185 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~v~~Ll~~~~  252 (358)
                      ...+..|.||||+|+..|+.+++++|++   .|+    +++.++..|+||||+|+.  .++.+       ++++|++.++
T Consensus       130 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga----~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga  205 (256)
T 2etb_A          130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA----SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA  205 (256)
T ss_dssp             SSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhccccCC----CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC
Confidence            1122234455555555555555555554   342    244444455555555554  44444       5555555543


Q ss_pred             CCc------ccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          253 ESY------SIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       253 ~~~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      +..      +.+|..|.||||+|+..|+.+++++|+++|
T Consensus       206 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             HHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            311      445555555555555555555555555554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=6.2e-35  Score=243.68  Aligned_cols=210  Identities=19%  Similarity=0.201  Sum_probs=136.5

Q ss_pred             cchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHH
Q 037701           64 SLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEI  143 (358)
Q Consensus        64 ~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~L  143 (358)
                      +..+..|..|.||||.|+..|+.++|+.|++.+..........       ....+..|.||||+|+.....++.+++++|
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L   76 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDS-------EFKDPETGKTCLLKAMLNLHNGQNDTIALL   76 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSG-------GGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCc-------ccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence            3355688899999999999999999999999876533211000       002477899999999753234889999999


Q ss_pred             HhcCCCC-------CC----CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccC--------------CCCCHHHHH
Q 037701          144 LENCPSA-------DH----RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR--------------HGWTSLHHA  198 (358)
Q Consensus       144 l~~~~~~-------~~----~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~--------------~~~t~l~~a  198 (358)
                      ++.|+++       +.    .+..|.||||+|+..++.+++++|++.|++ .+.++.              .|.||||+|
T Consensus        77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A  155 (273)
T 2pnn_A           77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLA  155 (273)
T ss_dssp             HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHH
T ss_pred             HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHH
Confidence            9987542       21    455788888888888888888888888776 344444              466666666


Q ss_pred             HHcCCHHHHHHHhc---CCCcccccccccCCCCCCHHHHHHHcCc---------HHHHHHHHhhCCCCc------ccccC
Q 037701          199 AYLGHSNITSMMLK---SEDDKIVALYKEDDRGMTALHLAASQGY---------ERVVRRIIRHCPESY------SIVDN  260 (358)
Q Consensus       199 ~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~v~~Ll~~~~~~~------~~~~~  260 (358)
                      +..|+.+++++|++   .|.    +++.++..|+||||+|+..++         .+++++|++.+++..      +.+|.
T Consensus       156 ~~~g~~~~v~~Ll~~~~~ga----d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~  231 (273)
T 2pnn_A          156 ACTNQLAIVKFLLQNSWQPA----DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR  231 (273)
T ss_dssp             HHTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred             HHcCCHHHHHHHHhcccCCC----CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC
Confidence            66666666666666   453    355556666666666666555         556666666554321      23556


Q ss_pred             CCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          261 RGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       261 ~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      .|.||||+|+..|+.+++++|+++|
T Consensus       232 ~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          232 KGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhChHHHHHHHHHCC
Confidence            6666666666666666666666666

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.8e-34  Score=238.57  Aligned_cols=198  Identities=20%  Similarity=0.178  Sum_probs=169.4

Q ss_pred             CCcHHHHHHHHHhCCcHH----HHHHHHhcCCCCCC----CCCCCccHHHHHHhc---CcHHHHHHHHHhCCcccc----
Q 037701          121 KNTALHEAVQSAAKGSVE----MVAEILENCPSADH----RGPDGLTTLHAAVIC---NAEDVIKLLLEKKKILTR----  185 (358)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~----~~~~Ll~~~~~~~~----~~~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~----  185 (358)
                      |.||||.|+..   ++.+    ++++|++.|++++.    .+..|.||||+|+..   |+.+++++|++.|+....    
T Consensus         2 G~t~L~~A~~~---g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            2 DRDRLFSVVSR---GVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CHHHHHHHHHH---TCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CccHHHHHHHc---CCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            67999999887   8886    77888889999998    899999999999999   999999999998876432    


Q ss_pred             ------cccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCC-------------CCCHHHHHHHcCcHHHHHH
Q 037701          186 ------ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDR-------------GMTALHLAASQGYERVVRR  246 (358)
Q Consensus       186 ------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-------------g~t~l~~a~~~~~~~~v~~  246 (358)
                            .++..|.||||+|+..|+.+++++|++.|++    ++..+..             |.||||+|+..|+.+++++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~  154 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD----VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY  154 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                  1346799999999999999999999999865    5556654             9999999999999999999


Q ss_pred             HHh---hCCCCcccccCCCCcHHHHHHH--cCChh-------HHHHHhcCccccccc-------cCCCCCCChHHHHHHH
Q 037701          247 IIR---HCPESYSIVDNRGWNARHFAMV--SLRGG-------VLKSLLENPYVISLI-------HGRDKNGNTPLHVLAA  307 (358)
Q Consensus       247 Ll~---~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~~~-------~~~~~~g~tpL~~a~~  307 (358)
                      |++   .+.+ ++.+|..|+||||+|+.  .++.+       ++++|+++|   +++       +.+|..|+||||+|+.
T Consensus       155 Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g---a~~~~~~~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          155 LLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG---ARLCPTVQLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             HHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---HHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC---CCcccccccccccCCCCCCHHHHHHH
Confidence            999   6655 58889999999999998  77777       999999988   777       8899999999999999


Q ss_pred             hCCCCc-eeecCCcchHHHHhhC
Q 037701          308 ACRDSS-YFIVPDSDMYEAVNKQ  329 (358)
Q Consensus       308 ~~~~~~-~~Ll~~g~~~~~~~~~  329 (358)
                      .++..+ ++|+++|++.......
T Consensus       231 ~g~~~~v~~Ll~~g~~~~~~~~~  253 (256)
T 2etb_A          231 EGKIEIFRHILQREFSGAAAHHH  253 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             hCCHHHHHHHHhCCCCCCCcccc
Confidence            999888 9999999887665543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.3e-33  Score=215.19  Aligned_cols=158  Identities=29%  Similarity=0.421  Sum_probs=130.6

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC
Q 037701          123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG  202 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  202 (358)
                      ++|+.|++.   |+.++++.|++.|+++|.++..|.||||+|+..++.+++++|++.|++ .+.++..|.||||+|+..|
T Consensus         6 ~~L~~Aa~~---G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAEN---GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHc---CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcC
Confidence            578888654   889999999999999988888899999999999999999998888877 5677888888888888888


Q ss_pred             CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHh
Q 037701          203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLL  282 (358)
Q Consensus       203 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  282 (358)
                      +.+++++|++.|++    ++.++..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+
T Consensus        82 ~~~~v~~Ll~~gad----vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           82 HKEVVKLLISKGAD----VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHCcCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            88888888888854    777888888888888888888888888888776 4778888888888888888888888888


Q ss_pred             cCcccccccc
Q 037701          283 ENPYVISLIH  292 (358)
Q Consensus       283 ~~~~~~~~~~  292 (358)
                      ++|   ++++
T Consensus       157 ~~G---A~ie  163 (169)
T 4gpm_A          157 KQG---GWLE  163 (169)
T ss_dssp             TC--------
T ss_pred             HCC---CCcC
Confidence            888   6653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.4e-32  Score=210.83  Aligned_cols=159  Identities=26%  Similarity=0.351  Sum_probs=144.8

Q ss_pred             cHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc
Q 037701          159 TTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ  238 (358)
Q Consensus       159 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~  238 (358)
                      ++|+.|++.|+.++|++|++.|++ ++.++..|.|||++|+..++.+++++|++.|.+    ++.++..|+||||+|+..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad----~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD----VNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc----hhhhccCCCCHHHHHHHc
Confidence            579999999999999999999988 678999999999999999999999999999855    788899999999999999


Q ss_pred             CcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeec
Q 037701          239 GYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIV  317 (358)
Q Consensus       239 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll  317 (358)
                      |+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|   ++++.+|..|+||||+|++.++.++ ++|+
T Consensus        81 g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           81 GHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKG---ADVNTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999876 5889999999999999999999999999999   8999999999999999999999999 9999


Q ss_pred             CCcchHHHH
Q 037701          318 PDSDMYEAV  326 (358)
Q Consensus       318 ~~g~~~~~~  326 (358)
                      ++||+++..
T Consensus       157 ~~GA~ie~~  165 (169)
T 4gpm_A          157 KQGGWLEHH  165 (169)
T ss_dssp             TC-------
T ss_pred             HCCCCcCCC
Confidence            999998753

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=4.4e-33  Score=230.80  Aligned_cols=211  Identities=20%  Similarity=0.191  Sum_probs=136.9

Q ss_pred             ccCCCceehhhhccccccccchHHHHHHHHhhCccchhccc----CCCCchhHHHH---hcCCcHHHHHHHHHHHhhhHh
Q 037701           30 THEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVN----DKGDTPLHVAA---KCRHPAVVEVLIKFAKKQSRE  102 (358)
Q Consensus        30 ~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~t~Lh~A~---~~~~~~~v~~Ll~~~~~~~~~  102 (358)
                      +..+.++||.|+..|+   .+.++.+++.+...+..++..+    ..|.||||+|+   ..|+.+++++|++.|++....
T Consensus         2 ~~~~~~~L~~A~~~g~---~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGS---PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTC---GGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred             ccchHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence            4568899999999999   8888877776555566676655    67999999999   779999999999999874321


Q ss_pred             hhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCC--------------CCCccHHHHHHhcC
Q 037701          103 LESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRG--------------PDGLTTLHAAVICN  168 (358)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~l~~a~~~~  168 (358)
                      ..    .....+...+..|.||||+|+..   ++.+++++|++.|++++..+              ..|.||||+|+..|
T Consensus        79 ~~----~~~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g  151 (260)
T 3jxi_A           79 RE----FINSPFRDVYYRGQTALHIAIER---RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN  151 (260)
T ss_dssp             HH----HHTCCBCCSSEESBCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred             Hh----hhcccccccccCCCCHHHHHHHc---CCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC
Confidence            10    00000123445788888888665   88888888888888888777              35666666666666


Q ss_pred             cHHHHHHHHH---hCCcccccccCCCCCHHHHHHHcCC---------HHHHHHHhcCCCccccc---ccccCCCCCCHHH
Q 037701          169 AEDVIKLLLE---KKKILTRERDRHGWTSLHHAAYLGH---------SNITSMMLKSEDDKIVA---LYKEDDRGMTALH  233 (358)
Q Consensus       169 ~~~~v~~Ll~---~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~~~---~~~~~~~g~t~l~  233 (358)
                      +.+++++|++   .|++ .+.++..|.||||+|+..++         .+++++|++.|++....   .+..+..|.||||
T Consensus       152 ~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          152 QPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             CHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHH
Confidence            6666666666   4444 44555566666666665554         45555555555331000   0334555555555


Q ss_pred             HHHHcCcHHHHHHHHhhC
Q 037701          234 LAASQGYERVVRRIIRHC  251 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~~  251 (358)
                      +|+..|+.+++++|++++
T Consensus       231 ~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          231 MAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhC
Confidence            555555555555555554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=1.6e-32  Score=227.40  Aligned_cols=197  Identities=19%  Similarity=0.181  Sum_probs=155.5

Q ss_pred             cccCCcHHHHHHHHHhCCcHHH----HHHHHhcCCCCCCCC----CCCccHHHHHH---hcCcHHHHHHHHHhCCcc---
Q 037701          118 NEEKNTALHEAVQSAAKGSVEM----VAEILENCPSADHRG----PDGLTTLHAAV---ICNAEDVIKLLLEKKKIL---  183 (358)
Q Consensus       118 ~~~~~t~l~~a~~~~~~~~~~~----~~~Ll~~~~~~~~~~----~~~~t~l~~a~---~~~~~~~v~~Ll~~~~~~---  183 (358)
                      +..+.++||.|++.   ++.+.    +++|++.+.+++..+    ..|.||||+|+   ..|+.+++++|++.++..   
T Consensus         2 ~~~~~~~L~~A~~~---g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSR---GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             CCCCHHHHHHHHHH---TCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred             ccchHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence            34677999999877   88884    555555898888655    66999999998   679999999999987532   


Q ss_pred             -------cccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccC--------------CCCCCHHHHHHHcCcHH
Q 037701          184 -------TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKED--------------DRGMTALHLAASQGYER  242 (358)
Q Consensus       184 -------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~  242 (358)
                             ....+..|.||||+|+..|+.+++++|++.|++    ++..+              ..|.||||+|+..|+.+
T Consensus        79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  154 (260)
T 3jxi_A           79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD----VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH  154 (260)
T ss_dssp             HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred             HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC----cCccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence                   233445788999999999999999999988854    55555              57888888888888888


Q ss_pred             HHHHHHh---hCCCCcccccCCCCcHHHHHHHcCC---------hhHHHHHhcCccccccc-------cCCCCCCChHHH
Q 037701          243 VVRRIIR---HCPESYSIVDNRGWNARHFAMVSLR---------GGVLKSLLENPYVISLI-------HGRDKNGNTPLH  303 (358)
Q Consensus       243 ~v~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~~~-------~~~~~~g~tpL~  303 (358)
                      ++++|++   .+.+ ++.+|..|+||||+|+..++         .+++++|+++|   +++       +.+|..|.||||
T Consensus       155 ~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          155 IVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC---AKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             HHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH---HHHCTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC---cccccccchhhcccCCCCCHHH
Confidence            8888888   5554 57788888888888888777         58888888887   666       668888888888


Q ss_pred             HHHHhCCCCc-eeecCCcchHHH
Q 037701          304 VLAAACRDSS-YFIVPDSDMYEA  325 (358)
Q Consensus       304 ~a~~~~~~~~-~~Ll~~g~~~~~  325 (358)
                      +|++.++..+ ++|+++|++...
T Consensus       231 ~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          231 MAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHhCCCccc
Confidence            8888888888 888888876543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.6e-31  Score=221.54  Aligned_cols=193  Identities=19%  Similarity=0.235  Sum_probs=169.6

Q ss_pred             CCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCC-CC
Q 037701           72 KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCP-SA  150 (358)
Q Consensus        72 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~-~~  150 (358)
                      .+.+++|.|+..++.+.++.+++.+.+..             ++..|..|.||||+|+..   ++.+++++|++.|+ ++
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-------------~n~~d~~g~T~Lh~A~~~---g~~~~v~~Ll~~g~~~~  138 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYV-------------VNIADSNGNTALHYSVSH---ANFPVVQQLLDSGVCKV  138 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHH-------------HTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTSCCCT
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhc-------------CcCCCCCCCCHHHHHHHC---CCHHHHHHHHHCCCCcC
Confidence            35688999999999999999998876532             567899999999999765   99999999999998 99


Q ss_pred             CCCCCCCccHHHHHH-----hcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccC
Q 037701          151 DHRGPDGLTTLHAAV-----ICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKED  225 (358)
Q Consensus       151 ~~~~~~~~t~l~~a~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  225 (358)
                      +..+..|.||||+|+     ..++.+++++|++.|.. ....+..|.||||+|+..|+.+++++|++.|++    ++.++
T Consensus       139 ~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad----~n~~d  213 (276)
T 4hbd_A          139 DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEAD----VNVQD  213 (276)
T ss_dssp             TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCC
T ss_pred             CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCCC
Confidence            999999999999999     56889999999999876 567788899999999999999999999999855    77789


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          226 DRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       226 ~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      ..|.||||+|+..|+.+++++|++..+.+++.+|..|.||||+|+..|+.+++++|+++.
T Consensus       214 ~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999999999434446889999999999999999999999999865

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=7.1e-31  Score=207.24  Aligned_cols=163  Identities=25%  Similarity=0.258  Sum_probs=120.9

Q ss_pred             chhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHH
Q 037701           65 LLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEIL  144 (358)
Q Consensus        65 ~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll  144 (358)
                      .++.+|..|.||||+|+..|+.+++++|++.|++               ++..+..|.||||+|+..   ++.+++++|+
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll   88 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK---------------LEDKDIEGSTALIWAVKN---NRLGIAEKLL   88 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC---------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc---------------cccccccCccHHHHHHHc---CCHHHHHHHH
Confidence            3566777888888888888888888888887766               335677778888888654   7788888888


Q ss_pred             hcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccccc
Q 037701          145 ENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKE  224 (358)
Q Consensus       145 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  224 (358)
                      +.|++++..+..|.||||+|+..++.+++++|++.|++ .+.++..|.||||+|+..|+.+++++|++.|++    ++.+
T Consensus        89 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~  163 (192)
T 2rfm_A           89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISAR  163 (192)
T ss_dssp             HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCB
T ss_pred             HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCc
Confidence            88877777777777888887777777777777777766 456667777777777777777777777777643    5556


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          225 DDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       225 ~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      +..|.||+++|+..|+.+++++|++.
T Consensus       164 ~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          164 DLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             CTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            67777777777777777777777665

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=1.3e-34  Score=249.66  Aligned_cols=271  Identities=15%  Similarity=0.072  Sum_probs=172.0

Q ss_pred             CCceehhhhc-cccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHH
Q 037701           33 KNTVLHVNIA-SQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIR  111 (358)
Q Consensus        33 ~~t~l~~a~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  111 (358)
                      +.+++++|.. .+.   .+.++++..           .+.++.||||+|+..|+.++|++|++.|+....          
T Consensus        65 ~ll~~~~a~~~~~~---~~~~~~l~~-----------~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~----------  120 (376)
T 2aja_A           65 QLLCLYYAHYNRNA---KQLWSDAHK-----------KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI----------  120 (376)
T ss_dssp             HHHHHHHHHTTTTC---TTHHHHHHH-----------HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS----------
T ss_pred             HHHHHHHHHhcCCC---HHHHHHHHH-----------cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH----------
Confidence            3455666655 344   556666554           234456999999999999999999988872110          


Q ss_pred             HHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC---CCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccc-cc
Q 037701          112 WMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA---DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR-ER  187 (358)
Q Consensus       112 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~  187 (358)
                        ....+..+.||||+|+..   |+.+++++|+++|+++   +..+.+ .||||+|+..|+.+++++|+++|++... ..
T Consensus       121 --~~~~~~~~~tpL~~Aa~~---G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~  194 (376)
T 2aja_A          121 --VKVIQAENYQAFRLAAEN---GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMI  194 (376)
T ss_dssp             --CC--CHHHHHHHHHHHHT---TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHH
T ss_pred             --HHHhccCCCCHHHHHHHc---CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhcc
Confidence              012344566899999665   9999999999998752   222333 8899999999999999999998877332 26


Q ss_pred             cCCCCCHHHHHH-HcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHH
Q 037701          188 DRHGWTSLHHAA-YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNAR  266 (358)
Q Consensus       188 ~~~~~t~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  266 (358)
                      +..|.||||+|+ ..|+.+++++|++.|+           .|.||++.|+..|+.+++++|++.+++. +..+    +++
T Consensus       195 d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----------~~~taL~~Aa~~g~~evv~lL~~~ga~~-~~~~----~~l  258 (376)
T 2aja_A          195 QAENYYAFRWAAVGRGHHNVINFLLDCPV-----------MLAYAEIHEFEYGEKYVNPFIARHVNRL-KEMH----DAF  258 (376)
T ss_dssp             HHHHHHHHHHHHSTTCCHHHHHHHTTSHH-----------HHHHHHHCTTTTTTTTHHHHHHHHHHHH-HHHH----TTT
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHhCCC-----------ccchHHHHHHHCCCHHHHHHHHhcCccc-cccc----HHH
Confidence            777889999999 9999999999998652           2678999999999999999999876542 2222    233


Q ss_pred             HHHHHcCCh---------------------------hHHHHHhcCcccccc--ccCCCCCCChHHHHHHHhCCCCc-eee
Q 037701          267 HFAMVSLRG---------------------------GVLKSLLENPYVISL--IHGRDKNGNTPLHVLAAACRDSS-YFI  316 (358)
Q Consensus       267 ~~a~~~~~~---------------------------~~~~~Ll~~~~~~~~--~~~~~~~g~tpL~~a~~~~~~~~-~~L  316 (358)
                      +.|+..|+.                           +.+++|++.+.....  .......+.||||+|+..|+..+ ++|
T Consensus       259 ~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lL  338 (376)
T 2aja_A          259 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL  338 (376)
T ss_dssp             TTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred             HHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHH
Confidence            334333333                           344555554321011  11223457799999999999999 999


Q ss_pred             cCCcchHHHHhhCCCchhhHhhhCCCCcccccceeee
Q 037701          317 VPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLLII  353 (358)
Q Consensus       317 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  353 (358)
                      ++.|   .+++..|+|++++|... |..++++.-+++
T Consensus       339 l~~~---~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~  371 (376)
T 2aja_A          339 LSIP---SVLALTKANNYYINETG-GRLDLRAVALEH  371 (376)
T ss_dssp             TTSH---HHHHSCC-----------------------
T ss_pred             HcCh---HHHHHHHHhcccccccc-ccccHHHHHHHH
Confidence            9875   78999999999999875 889988876654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.9e-33  Score=226.43  Aligned_cols=200  Identities=14%  Similarity=0.112  Sum_probs=167.6

Q ss_pred             HHHHHhcCCCCCCCC---CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCc
Q 037701          140 VAEILENCPSADHRG---PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD  216 (358)
Q Consensus       140 ~~~Ll~~~~~~~~~~---~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  216 (358)
                      ++.|++.|.+++..+   ..+.||||+|+..|+.+++++|++.|++ .+.++..|.||||+|+..|+.+++++|++.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            467888888876544   4567889999999999999999999987 677899999999999999999999999999854


Q ss_pred             ccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCccccc-CCCCcHHHHH--HHcCChhHHHHHhcCccccccccC
Q 037701          217 KIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVD-NRGWNARHFA--MVSLRGGVLKSLLENPYVISLIHG  293 (358)
Q Consensus       217 ~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~  293 (358)
                          ++..+..|.||||+|+..|+.+++++|++.+++. +..+ ..|.||||+|  +..++.+++++|+++|   ++++.
T Consensus        80 ----~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g---a~~~~  151 (229)
T 2vge_A           80 ----VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVE---QSMGL  151 (229)
T ss_dssp             ----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH---HHTTT
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC---CCccc
Confidence                7788999999999999999999999999998875 5554 6999999999  9999999999999999   88999


Q ss_pred             CCCCCChHHHHHHHhCCCCceeecCCcch--HHHHhhCCCchhhHhhhCCCCccccccee
Q 037701          294 RDKNGNTPLHVLAAACRDSSYFIVPDSDM--YEAVNKQNTSVEHIVRYGYPELEVIPSLL  351 (358)
Q Consensus       294 ~~~~g~tpL~~a~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  351 (358)
                      +|..|.||++.++...  ..++|++.|++  ++.+|..|+|||++|+.. |+.++++.++
T Consensus       152 ~~~~~~~~l~~~~~~~--~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~-g~~~~v~~~~  208 (229)
T 2vge_A          152 MNSGAVYALWDYSAEF--GDELSFREGESVTVLRRDGPEETDWWWAALH-GQEGYVPRNY  208 (229)
T ss_dssp             SGGGEEEESSCBCCSS--TTBCCBCTTCEEEEEESSCTTCSSEEEEEET-TEEEEEEGGG
T ss_pred             ccCCchHHHHHHhhcc--ccccCccccccccccccCCCcccHHHHHHHc-CCcceeehhh
Confidence            9999999998644332  22788899988  778899999999999985 9999998643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.6e-31  Score=205.90  Aligned_cols=169  Identities=16%  Similarity=0.189  Sum_probs=103.2

Q ss_pred             CCcHHHHHHHHHhCCcHHHHHHHHhcCCC-CCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037701          121 KNTALHEAVQSAAKGSVEMVAEILENCPS-ADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA  199 (358)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  199 (358)
                      +.||||.|+..   ++.++++.|++.+.+ ++..+..|.||||+|+..++.+++++|++.|++ .+..+..|.||||+|+
T Consensus         2 ~~~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            2 DSLSIHQLAAQ---GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLAS   77 (172)
T ss_dssp             --CCHHHHHHT---TCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHH
T ss_pred             chhhHHHHHHc---CCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHH
Confidence            34666666543   666666666666655 556666666666666666666666666666655 4455666666666666


Q ss_pred             HcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHH
Q 037701          200 YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLK  279 (358)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  279 (358)
                      ..++.+++++|++.+.+    ++..+..|.||||+|+..++.+++++|++.+++ ++.++..|.||||+|+..++.++++
T Consensus        78 ~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVD----INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             HTTCHHHHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HCCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHH
Confidence            66666666666666633    555566666666666666666666666666554 3556666666666666666666666


Q ss_pred             HHhcCccccccccCCCCCCChH
Q 037701          280 SLLENPYVISLIHGRDKNGNTP  301 (358)
Q Consensus       280 ~Ll~~~~~~~~~~~~~~~g~tp  301 (358)
                      +|++++   +++..++..|.||
T Consensus       153 ~L~~~~---~~~~~~~~~~~~p  171 (172)
T 3v30_A          153 VIENHI---LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHH---HHHSCC-------
T ss_pred             HHHHHH---HHHhcccCCCCCC
Confidence            666666   5555555555554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.7e-30  Score=203.89  Aligned_cols=163  Identities=23%  Similarity=0.249  Sum_probs=151.0

Q ss_pred             HHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCC
Q 037701          114 LLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWT  193 (358)
Q Consensus       114 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t  193 (358)
                      ++.+|..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+++ .+.++..|.|
T Consensus        28 ~n~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t  103 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACML---GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKT  103 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHH---TCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCC
T ss_pred             HhCcCCCCCCHHHHHHHc---CCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Confidence            567899999999999877   999999999999999999999999999999999999999999999887 5778899999


Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcC
Q 037701          194 SLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL  273 (358)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  273 (358)
                      |||+|+..++.+++++|++.+.+    ++..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||+|+|+..+
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGAN----VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFG  178 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC----SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhC
Confidence            99999999999999999999854    778899999999999999999999999999776 5889999999999999999


Q ss_pred             ChhHHHHHhcCc
Q 037701          274 RGGVLKSLLENP  285 (358)
Q Consensus       274 ~~~~~~~Ll~~~  285 (358)
                      +.+++++|++++
T Consensus       179 ~~~~v~~Ll~~~  190 (192)
T 2rfm_A          179 RQEVIKIFTEVR  190 (192)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcc
Confidence            999999999865

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=6e-31  Score=219.30  Aligned_cols=198  Identities=20%  Similarity=0.225  Sum_probs=172.9

Q ss_pred             ccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHH-hhhHhhhcchh
Q 037701           30 THEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAK-KQSRELESGVD  108 (358)
Q Consensus        30 ~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~  108 (358)
                      +....+++|.|+..++   .+.++.++....  ...++..|..|.||||+|+..|+.++|++|++.|+ +          
T Consensus        73 ~~~~~~~l~~a~~~~~---~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~----------  137 (276)
T 4hbd_A           73 RLACRSDAHPELVRRH---LVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK----------  137 (276)
T ss_dssp             HHHHSTTCCHHHHHHH---HHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC----------
T ss_pred             HHHhccCCCHHHHHHH---HHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc----------
Confidence            3456788999999999   777776655321  22478899999999999999999999999999997 5          


Q ss_pred             HHHHHHHhhcccCCcHHHHHHHHH--hCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCccccc
Q 037701          109 WIRWMLLVENEEKNTALHEAVQSA--AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRE  186 (358)
Q Consensus       109 ~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~  186 (358)
                           ++..+..|.||||+|+...  ..++.++++.|++.|.+++..+..|.||||+|+..|+.+++++|++.|++ .+.
T Consensus       138 -----~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~  211 (276)
T 4hbd_A          138 -----VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNV  211 (276)
T ss_dssp             -----TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTC
T ss_pred             -----CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCC
Confidence                 4468999999999996210  33789999999999999999999999999999999999999999999988 678


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHhc-CCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCC
Q 037701          187 RDRHGWTSLHHAAYLGHSNITSMMLK-SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCP  252 (358)
Q Consensus       187 ~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~  252 (358)
                      ++..|.||||+|+..|+.+++++|++ .|.    +++.++..|.||||+|+..|+.+++++|+++..
T Consensus       212 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          212 QDDDGSTALMCACEHGHKEIAGLLLAVPSC----DISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHTSTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhcCCC----CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            89999999999999999999999999 674    478889999999999999999999999999854

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=5.6e-30  Score=196.43  Aligned_cols=157  Identities=25%  Similarity=0.346  Sum_probs=146.7

Q ss_pred             cCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037701          120 EKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA  199 (358)
Q Consensus       120 ~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  199 (358)
                      ...|||+.|+..   ++.+++++|++.|++++..+..|.||||+|+. ++.+++++|++.|.+ .+.++..|.||||+|+
T Consensus         4 ~~~~~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            4 PWGNELASAAAR---GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             -CHHHHHHHHHH---TCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             hHhhHHHHHHHc---CCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence            355999999877   99999999999999999999999999999999 999999999999887 5678999999999999


Q ss_pred             HcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHH
Q 037701          200 YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLK  279 (358)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  279 (358)
                      ..|+.+++++|++.+.+    ++.++..|.||||+|+..|+.+++++|++.+++.++..+..|.||||+|+..++.++++
T Consensus        79 ~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQAD----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             HHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            99999999999999854    77889999999999999999999999999999877889999999999999999999999


Q ss_pred             HHhcCc
Q 037701          280 SLLENP  285 (358)
Q Consensus       280 ~Ll~~~  285 (358)
                      +|+++|
T Consensus       155 ~Ll~~G  160 (162)
T 1ihb_A          155 LMQANG  160 (162)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            999988

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5.7e-30  Score=198.35  Aligned_cols=169  Identities=20%  Similarity=0.188  Sum_probs=152.3

Q ss_pred             CccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHH
Q 037701          157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA  236 (358)
Q Consensus       157 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~  236 (358)
                      +.+|||.|+..|+.+++++|++.+....+.++..|.||||+|+..|+.+++++|++.|.+    ++..+..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD----PHILAKERESALSLAS   77 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTCCCHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----chhhcccCCCHHHHHH
Confidence            468999999999999999999999887888899999999999999999999999999854    7778899999999999


Q ss_pred             HcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-ee
Q 037701          237 SQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YF  315 (358)
Q Consensus       237 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~  315 (358)
                      ..++.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++|   ++++.+|..|.||||+|+..++..+ ++
T Consensus        78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~  153 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARG---ADLTTEADSGYTPMDLAVALGYRKVQQV  153 (172)
T ss_dssp             HTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999999999999776 5889999999999999999999999999998   8999999999999999999999999 99


Q ss_pred             ecCCcchHHHHhhCCCch
Q 037701          316 IVPDSDMYEAVNKQNTSV  333 (358)
Q Consensus       316 Ll~~g~~~~~~~~~g~t~  333 (358)
                      |+++|+++..++..|.||
T Consensus       154 L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          154 IENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHSCC-------
T ss_pred             HHHHHHHHhcccCCCCCC
Confidence            999999999999999887

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.8e-29  Score=194.61  Aligned_cols=157  Identities=25%  Similarity=0.253  Sum_probs=90.1

Q ss_pred             CCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCC
Q 037701           72 KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD  151 (358)
Q Consensus        72 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~  151 (358)
                      .|.||||.|+..|+.+++++|++.|++               ++..+..|.||||+|+..   ++.+++++|++.|++++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~   63 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV---------------INHTDEEGFTPLMWAAAH---GQIAVVEFLLQNGADPQ   63 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC---------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC---------------cCCCCCCCCCHHHHHHHC---CCHHHHHHHHHcCCCCC
Confidence            355666666666666666666665544               334555566666666443   56666666666666666


Q ss_pred             CCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCH
Q 037701          152 HRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTA  231 (358)
Q Consensus       152 ~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~  231 (358)
                      ..+..|.||||+|+..++.+++++|++.+.+ .+.++..|.||||+|+..|+.+++++|++.|++    ++..+..|.||
T Consensus        64 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~  138 (167)
T 3v31_A           64 LLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD----PTIETDSGYNS  138 (167)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCH
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCH
Confidence            6565666666666666666666666655555 344555555555555555555555555555533    44445555555


Q ss_pred             HHHHHHcCcHHHHHHHHhhC
Q 037701          232 LHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       232 l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      +++|+..|+.+++++|++++
T Consensus       139 l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          139 MDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHH
Confidence            55555555555555555543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=4.5e-29  Score=192.58  Aligned_cols=161  Identities=24%  Similarity=0.321  Sum_probs=144.5

Q ss_pred             hhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHH
Q 037701          116 VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSL  195 (358)
Q Consensus       116 ~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  195 (358)
                      .....+.++++.|++.   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ .+..+..|.|||
T Consensus         9 ~~~~~~~~~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   84 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARA---GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPL   84 (169)
T ss_dssp             ----CHHHHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             cCCCcccchHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHH
Confidence            3556677999999877   999999999999999999999999999999999999999999999887 567889999999


Q ss_pred             HHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCCh
Q 037701          196 HHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG  275 (358)
Q Consensus       196 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  275 (358)
                      |+|+..|+.+++++|++.+.+    ++..+..|.||||+|+..++.+++++|++++++ ++.+|..|.||+++|+..++.
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~  159 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNE  159 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCH
Confidence            999999999999999999854    777889999999999999999999999999876 478899999999999999999


Q ss_pred             hHHHHHhcCc
Q 037701          276 GVLKSLLENP  285 (358)
Q Consensus       276 ~~~~~Ll~~~  285 (358)
                      +++++|+++|
T Consensus       160 ~~~~~L~~~G  169 (169)
T 2y1l_E          160 DLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHcC
Confidence            9999999875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=3.3e-33  Score=240.83  Aligned_cols=266  Identities=12%  Similarity=0.091  Sum_probs=177.6

Q ss_pred             hhcccc-cCCchhhhhhhhhhccceeccCCCceehhhhccccccccchHHHHHHHHhhCcc---chhcccCCCCchhHHH
Q 037701            5 LYRDAA-KGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPS---LLLQVNDKGDTPLHVA   80 (358)
Q Consensus         5 L~~A~~-~g~~~~~~~ll~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~g~t~Lh~A   80 (358)
                      +++|+. .++.+.++++++.+      .++.||||+|+..|+   .+++++|++    .+.   .....+..|.||||+|
T Consensus        69 ~~~a~~~~~~~~~~~~l~~~g------~~~~T~Lh~Aa~~G~---~e~v~~Ll~----~ga~~~~~~~~~~~~~tpL~~A  135 (376)
T 2aja_A           69 LYYAHYNRNAKQLWSDAHKKG------IKSEVICFVAAITGC---SSALDTLCL----LLTSDEIVKVIQAENYQAFRLA  135 (376)
T ss_dssp             HHHHHTTTTCTTHHHHHHHHT------CCHHHHHHHHHHHCC---HHHHHHHTT----C--CCSSCC--CHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHcC------CCcCCHHHHHHHcCC---HHHHHHHHH----cCCcHHHHHHhccCCCCHHHHH
Confidence            444444 46677777777665      344699999999999   888888866    232   1123445678999999


Q ss_pred             HhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC--CCCCCc
Q 037701           81 AKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH--RGPDGL  158 (358)
Q Consensus        81 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~--~~~~~~  158 (358)
                      +..|+.++|++|+++|++...            .+..+.+ .||||+|+..   |+.+++++|+++|++++.  .+..|.
T Consensus       136 a~~G~~eiv~~Ll~~gad~~~------------~~i~~~~-~TpLh~Aa~~---G~~eiv~~Ll~~ga~~~~~~~d~~g~  199 (376)
T 2aja_A          136 AENGHLHVLNRLCELAPTEIM------------AMIQAEN-YHAFRLAAEN---GHLHVLNRLCELAPTEATAMIQAENY  199 (376)
T ss_dssp             HHTTCHHHHHHHHHSCTTTHH------------HHHSHHH-HHHHHHHHHT---TCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCccc------------cccCCCC-CCHHHHHHHC---CCHHHHHHHHHcCCccchhccCCCCC
Confidence            999999999999999964221            1122222 7999999665   999999999999999876  778899


Q ss_pred             cHHHHHH-hcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCccccccc---ccCCCCC----C
Q 037701          159 TTLHAAV-ICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY---KEDDRGM----T  230 (358)
Q Consensus       159 t~l~~a~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~---~~~~~g~----t  230 (358)
                      ||||+|+ ..|+.+++++|++.|+        .+.|||++|+..|+.+++++|++.+++....-.   .-...|.    +
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~  271 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT  271 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSS
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhc
Confidence            9999999 9999999999998653        278999999999999999999998754211100   0011111    1


Q ss_pred             H---------HHHHHH---cCcHHHHHHHHhhCCCC----cccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCC
Q 037701          231 A---------LHLAAS---QGYERVVRRIIRHCPES----YSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGR  294 (358)
Q Consensus       231 ~---------l~~a~~---~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  294 (358)
                      +         +.....   .+..+.+++|++.....    .......+.||||+|+..|+.+++++|++.+      ..+
T Consensus       272 ~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~------~v~  345 (376)
T 2aja_A          272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP------SVL  345 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH------HHH
T ss_pred             HHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh------HHH
Confidence            1         111111   22355667776543210    1223345778999999999999999999987      236


Q ss_pred             CCCCChHHHHHHHhCCCCc
Q 037701          295 DKNGNTPLHVLAAACRDSS  313 (358)
Q Consensus       295 ~~~g~tpL~~a~~~~~~~~  313 (358)
                      +..|.||+.+|.+.|..++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~  364 (376)
T 2aja_A          346 ALTKANNYYINETGGRLDL  364 (376)
T ss_dssp             HSCC---------------
T ss_pred             HHHHHhccccccccccccH
Confidence            7899999999999988777

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=4.1e-30  Score=197.17  Aligned_cols=156  Identities=23%  Similarity=0.251  Sum_probs=78.5

Q ss_pred             CchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCC
Q 037701           74 DTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR  153 (358)
Q Consensus        74 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~  153 (358)
                      .||||.|+..|+.+++++|++.|++               ++..+..|.||||+|   +. ++.+++++|++.|++++.+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~---------------~~~~~~~g~t~L~~A---~~-~~~~~v~~Ll~~g~~~~~~   66 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVN---------------VNAQNGFGRTALQVM---KL-GNPEIARRLLLRGANPDLK   66 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCC---------------TTCCCTTSCCHHHHC---CS-SCHHHHHHHHHTTCCTTCC
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCC---------------ccccCccCccHHHHH---Hc-CcHHHHHHHHHcCCCCCCC
Confidence            3455555555555555555554443               223444555555554   22 4555555555555555555


Q ss_pred             CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHH
Q 037701          154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH  233 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~  233 (358)
                      +..|.||||+|+..++.+++++|++.|.+ .+.++..|.||||+|+..|+.+++++|++.+++   .++..+..|.||||
T Consensus        67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~t~l~  142 (162)
T 1ihb_A           67 DRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACD  142 (162)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC---CCCCcCCCCCcHHH
Confidence            55555555555555555555555555444 334445555555555555555555555555432   12344455555555


Q ss_pred             HHHHcCcHHHHHHHHhhCC
Q 037701          234 LAASQGYERVVRRIIRHCP  252 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~~~  252 (358)
                      +|+..|+.+++++|+++|+
T Consensus       143 ~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          143 LARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHcCCHHHHHHHHHhCC
Confidence            5555555555555555543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.9e-32  Score=221.62  Aligned_cols=200  Identities=16%  Similarity=0.222  Sum_probs=164.8

Q ss_pred             HHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcC
Q 037701           89 VEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICN  168 (358)
Q Consensus        89 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  168 (358)
                      ++.|+++|+++..            ....+..+.||||.|+..   ++.+++++|++.|++++..+..|.||||+|+..+
T Consensus         1 v~~ll~~~~~~~~------------~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g   65 (229)
T 2vge_A            1 MRSVLRKAGSPRK------------ARRARLNPLVLLLDAALT---GELEVVQQAVKEMNDPSQPNEEGITALHNAICGA   65 (229)
T ss_dssp             ---------CCCC------------CCCTTSCHHHHHHHHHHH---TCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTT
T ss_pred             CeehhccCCCCcc------------ccccccchhHHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4567777776543            123566788999999877   9999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccC-CCCCCHHHHH--HHcCcHHHHH
Q 037701          169 AEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKED-DRGMTALHLA--ASQGYERVVR  245 (358)
Q Consensus       169 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~v~  245 (358)
                      +.+++++|++.|++ .+.++..|.||||+|+..|+.+++++|++.|++    ++..+ ..|.||||+|  +..|+.++++
T Consensus        66 ~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~----~~~~~~~~g~tpL~~A~a~~~~~~~~v~  140 (229)
T 2vge_A           66 NYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA----IFATTLSDGATAFEKCDPYREGYADCAT  140 (229)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred             CHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----cccccCCCCCCHHHHHHHHhcChHHHHH
Confidence            99999999999888 678899999999999999999999999999865    66665 6999999999  9999999999


Q ss_pred             HHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc
Q 037701          246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS  313 (358)
Q Consensus       246 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~  313 (358)
                      +|++.+++ ++..+..|.||++.++.....   +.|++.|.. .+++.+|..|+||||+|+..|+..+
T Consensus       141 ~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga~-~~~~~~d~~G~TpL~~A~~~g~~~~  203 (229)
T 2vge_A          141 YLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSFREGES-VTVLRRDGPEETDWWWAALHGQEGY  203 (229)
T ss_dssp             HHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCBCTTCE-EEEEESSCTTCSSEEEEEETTEEEE
T ss_pred             HHHHcCCC-cccccCCchHHHHHHhhcccc---ccCcccccc-ccccccCCCcccHHHHHHHcCCcce
Confidence            99999876 478889999999876554433   566777721 2378899999999999999998877

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.2e-29  Score=194.35  Aligned_cols=160  Identities=25%  Similarity=0.349  Sum_probs=145.8

Q ss_pred             ccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCC
Q 037701           69 VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCP  148 (358)
Q Consensus        69 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~  148 (358)
                      ....+.+||+.|+..|+.++|++|+++|++               ++..+..|.||||+|+..   ++.+++++|++.|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~   71 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGAD---------------VNAEDASGWTPLHLAAFN---GHLEIVEVLLKNGA   71 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcCC
Confidence            345567999999999999999999999987               446888999999999775   99999999999999


Q ss_pred             CCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCC
Q 037701          149 SADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRG  228 (358)
Q Consensus       149 ~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g  228 (358)
                      +++..+..|.||||+|+..++.+++++|++.+++ .+.++..|.||||+|+..++.+++++|++.|++    ++.++..|
T Consensus        72 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g  146 (169)
T 2y1l_E           72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD----VNAQDKFG  146 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTS
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCC
Confidence            9999999999999999999999999999999988 567899999999999999999999999999855    77789999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhhC
Q 037701          229 MTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       229 ~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      .||+++|+..++.+++++|++.|
T Consensus       147 ~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          147 KTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=4.9e-29  Score=192.10  Aligned_cols=158  Identities=19%  Similarity=0.226  Sum_probs=137.3

Q ss_pred             cCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037701          120 EKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA  199 (358)
Q Consensus       120 ~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  199 (358)
                      .|.||||.|+..   ++.+++++|++.+.+++..+..|.||||+|+..++.+++++|++.+.+ .+..+..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQ---GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHT---TCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHC---CCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHH
Confidence            467999999665   899999999999998998899999999999999999999999988877 5677888999999999


Q ss_pred             HcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHH
Q 037701          200 YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLK  279 (358)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  279 (358)
                      ..|+.+++++|++.+.+    ++..+..|.||||+|+..|+.+++++|++.+++ ++.++..|.||+|+|+..++.++++
T Consensus        78 ~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVD----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHTCHHHHHHHHHHTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHCCCC----CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            99999999999988854    677788899999999999999999999998766 4778888999999999999999999


Q ss_pred             HHhcCcc
Q 037701          280 SLLENPY  286 (358)
Q Consensus       280 ~Ll~~~~  286 (358)
                      +|++++.
T Consensus       153 ~L~~~~~  159 (167)
T 3v31_A          153 VIESHLL  159 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988773

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=5.7e-30  Score=199.63  Aligned_cols=167  Identities=20%  Similarity=0.213  Sum_probs=131.4

Q ss_pred             ccCCcHHHHHHHHHhCCcHHHHHHHHhc-CCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHH
Q 037701          119 EEKNTALHEAVQSAAKGSVEMVAEILEN-CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHH  197 (358)
Q Consensus       119 ~~~~t~l~~a~~~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  197 (358)
                      +.+.++|+.|+..   ++.++++.|++. +.+++..+..|.||||+|+..++.+++++|++.|.+ .+.++..|.||||+
T Consensus         3 ~~~~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            3 PEFMDDIFTQCRE---GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHL   78 (179)
T ss_dssp             ----CCHHHHHHH---TCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             HHHHHHHHHHHHc---CCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHH
Confidence            4567888888776   888888888887 566788888888888888888888888888888777 56677888888888


Q ss_pred             HHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhH
Q 037701          198 AAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGV  277 (358)
Q Consensus       198 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  277 (358)
                      |+..|+.+++++|++.|.+    ++..+..|.||||+|+..++.+++++|++.+++ ++.+|..|.||+++|+..++.++
T Consensus        79 A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~  153 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKAD----INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELL  153 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHH
Confidence            8888888888888888744    667788888888888888888888888888766 47788888888888888888888


Q ss_pred             HHHHhcCccccccccCCCCC
Q 037701          278 LKSLLENPYVISLIHGRDKN  297 (358)
Q Consensus       278 ~~~Ll~~~~~~~~~~~~~~~  297 (358)
                      +++|+++|   ++++..+..
T Consensus       154 ~~~L~~~g---~~~~~~~~~  170 (179)
T 3f6q_A          154 RERAEKMG---QNLNRIPYK  170 (179)
T ss_dssp             HHHHHHTT---CCCSCBCCC
T ss_pred             HHHHHHhh---cCcccCCcc
Confidence            88888888   566555443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.7e-28  Score=186.14  Aligned_cols=149  Identities=25%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC
Q 037701          123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG  202 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  202 (358)
                      ++|+.|+..   ++.+++++|++.|.+++ .+..|.||||+|+..++.+++++|++.+.+ .+.++..|.||||+|+..|
T Consensus         4 ~~L~~A~~~---g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            4 KKLLEAARA---GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHH---TCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHc---CCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            444444333   44444444444444433 233444444444444444444444444443 2334444444444444444


Q ss_pred             CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHH
Q 037701          203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSL  281 (358)
Q Consensus       203 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  281 (358)
                      +.+++++|++.|.+    ++.++..|.||||+|+..|+.+++++|++.+++ ++.++..|.||+|+|+..|+.+++++|
T Consensus        79 ~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           79 HANIVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            44444444444422    334444455555555555555555555554433 244445555555555555555554443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.4e-30  Score=212.62  Aligned_cols=207  Identities=14%  Similarity=0.102  Sum_probs=147.8

Q ss_pred             ccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037701          119 EEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHA  198 (358)
Q Consensus       119 ~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a  198 (358)
                      ..|+||||.|++.   +..+.++.|+++|++++. +..+.||||.|+..|+.+++++|++.+++ .+.++..|.||||+|
T Consensus         3 ~~g~t~L~~a~~~---~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            3 ITGQVSLPPGKRT---NLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHH
T ss_pred             ccccccCchhhhh---hhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHH
Confidence            4688999999776   999999999999999986 46789999999999999999999999986 678899999999999


Q ss_pred             HHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCC-cHHHHH--HHcCCh
Q 037701          199 AYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGW-NARHFA--MVSLRG  275 (358)
Q Consensus       199 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~-t~l~~a--~~~~~~  275 (358)
                      +..|+.+++++|++.|++    ++..+..|.||||+|+..|+.+++++|++++++. +..+..|. ||+|+|  +..|+.
T Consensus        78 ~~~g~~~~v~~Ll~~ga~----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVN----VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             HHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccH
Confidence            999999999999999854    7888999999999999999999999999998775 67777666 999999  788999


Q ss_pred             hHHHHHhcCccccccccCC---------CCCCChHHHHHHHhCCCCceeecCCcch------HHHHhhCCCchhhHhhh
Q 037701          276 GVLKSLLENPYVISLIHGR---------DKNGNTPLHVLAAACRDSSYFIVPDSDM------YEAVNKQNTSVEHIVRY  339 (358)
Q Consensus       276 ~~~~~Ll~~~~~~~~~~~~---------~~~g~tpL~~a~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~a~~  339 (358)
                      +++++|++.+   ++++..         +..|.+|++++.+.|. .+..|.+.+.+      ....++.|.+|..|...
T Consensus       153 ~~~~~Ll~~~---a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~-~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~  227 (239)
T 1ycs_B          153 QCSQFLYGVQ---EKMGIMNKGVIYALWDYEPQNDDELPMKEGD-CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL  227 (239)
T ss_dssp             CHHHHHHHHH---HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC-EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEEC
T ss_pred             HHHHHHHHhh---hcccccccceEEEEeccCCCCCCcccccCCC-EEEEEEecCCCCCCEEEEEECCcEEEeehHHeeE
Confidence            9999999988   555444         6778999998877665 23666655543      23567789999998865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=6.6e-28  Score=182.88  Aligned_cols=150  Identities=22%  Similarity=0.265  Sum_probs=137.8

Q ss_pred             CccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHH
Q 037701          157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA  236 (358)
Q Consensus       157 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~  236 (358)
                      ..+||+.|++.|+.+++++|++.+....  .+..|.||||+|+..|+.+++++|++.+.+    ++..+..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS----RDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHH
Confidence            4689999999999999999999998743  588999999999999999999999999854    7778999999999999


Q ss_pred             HcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-ee
Q 037701          237 SQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YF  315 (358)
Q Consensus       237 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~  315 (358)
                      ..|+.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|+++|   ++++.+|..|.||||+|+..++.++ ++
T Consensus        76 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           76 SEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999776 5889999999999999999999999999998   8999999999999999999998776 44


Q ss_pred             e
Q 037701          316 I  316 (358)
Q Consensus       316 L  316 (358)
                      |
T Consensus       152 L  152 (153)
T 1awc_B          152 L  152 (153)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=2.5e-29  Score=193.34  Aligned_cols=159  Identities=22%  Similarity=0.279  Sum_probs=112.1

Q ss_pred             hcccCCcHHHHHHHHHhCCcHHHHHHHHh-cCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHH
Q 037701          117 ENEEKNTALHEAVQSAAKGSVEMVAEILE-NCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSL  195 (358)
Q Consensus       117 ~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  195 (358)
                      .+..+.|||+.|+..   ++.++++.|++ .+.+++..+..|.||||+|+..++.+++++|++.+.+ .+.++..|.|||
T Consensus         4 ~~~~~~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   79 (165)
T 3twr_A            4 GNSEADRQLLEAAKA---GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPL   79 (165)
T ss_dssp             --CHHHHHHHHHHHH---TCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CcchhhHHHHHHHHh---CCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHH
Confidence            566677777777665   77777777776 3345566666677777777777777777777777766 456677777777


Q ss_pred             HHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCCh
Q 037701          196 HHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG  275 (358)
Q Consensus       196 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  275 (358)
                      |+|+..|+.+++++|++.+.+    ++..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||+|+|+. ++.
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A           80 HNACSYGHYEVAELLVKHGAV----VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCH
T ss_pred             HHHHHcCcHHHHHHHHhCCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CCh
Confidence            777777777777777777643    556677777777777777777777777777655 36677777777777655 677


Q ss_pred             hHHHHHhcCc
Q 037701          276 GVLKSLLENP  285 (358)
Q Consensus       276 ~~~~~Ll~~~  285 (358)
                      +++++|++.|
T Consensus       154 ~i~~~L~~~g  163 (165)
T 3twr_A          154 DIQDLLRGDA  163 (165)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHhhcc
Confidence            7777777765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.7e-28  Score=189.35  Aligned_cols=168  Identities=20%  Similarity=0.281  Sum_probs=153.1

Q ss_pred             CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHH
Q 037701          155 PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHL  234 (358)
Q Consensus       155 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~  234 (358)
                      .++.++|+.|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+.+    ++..+..|.||||+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR----INVMNRGDDTPLHL   78 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----CCCcCCCCCCHHHH
Confidence            45789999999999999999999997777888999999999999999999999999999854    77789999999999


Q ss_pred             HHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-
Q 037701          235 AASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-  313 (358)
Q Consensus       235 a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-  313 (358)
                      |+..|+.+++++|++.+.+ ++..|..|.||||+|+..++.+++++|+++|   ++++.+|..|.|||++|+..++..+ 
T Consensus        79 A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCSSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCcchhccCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999876 5889999999999999999999999999999   8999999999999999999998888 


Q ss_pred             eeecCCcchHHHHhhCC
Q 037701          314 YFIVPDSDMYEAVNKQN  330 (358)
Q Consensus       314 ~~Ll~~g~~~~~~~~~g  330 (358)
                      ++|++.|++++..+..+
T Consensus       155 ~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          155 ERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHTTCCCSCBCCCC
T ss_pred             HHHHHhhcCcccCCccc
Confidence            99999999988766554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.5e-27  Score=181.65  Aligned_cols=153  Identities=21%  Similarity=0.273  Sum_probs=138.8

Q ss_pred             CCcHHHHHHHHHhCCcHHHHHHHHhc-CCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037701          121 KNTALHEAVQSAAKGSVEMVAEILEN-CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA  199 (358)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  199 (358)
                      +.|||+.|+..   ++.++++.|++. +.+++..+..|.||||+ +..++.+++++|++.|.+ .+.++..|.||||+|+
T Consensus         2 ~~~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            2 AGDRLSGAAAR---GDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHH---TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHHh---CCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHH
Confidence            45899999877   999999999988 34889999999999999 999999999999999887 5778899999999999


Q ss_pred             HcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHH
Q 037701          200 YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLK  279 (358)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  279 (358)
                      ..|+.+++++|++.|.+    ++..+..|.||||+|+..|+.+++++|++. . +++.+|..|.||||+|+..++.++++
T Consensus        77 ~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~-~~~~~~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGAD----VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S-DLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S-CTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             HcCcHHHHHHHHHcCCC----CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c-CCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            99999999999999854    777889999999999999999999999998 4 45889999999999999999999999


Q ss_pred             HHhcC
Q 037701          280 SLLEN  284 (358)
Q Consensus       280 ~Ll~~  284 (358)
                      +|+++
T Consensus       151 ~Ll~~  155 (156)
T 1bd8_A          151 ILQGH  155 (156)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            99975

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=4.4e-28  Score=184.56  Aligned_cols=153  Identities=26%  Similarity=0.304  Sum_probs=139.8

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHH-HhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFA-KKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD  151 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~  151 (358)
                      +.||||.|+..|+.+++++|++.. .+               ++..+..|.||||+ +..   ++.+++++|++.|++++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~-~~~---~~~~~v~~Ll~~g~~~~   62 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH---------------PDALNRFGKTALQV-MMF---GSTAIALELLKQGASPN   62 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC---------------TTCCCTTSCCHHHH-SCT---TCHHHHHHHHHTTCCTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC---------------ccccCCCCCcHHHH-HHc---CCHHHHHHHHHCCCCCC
Confidence            468999999999999999999982 13               44678899999999 665   99999999999999999


Q ss_pred             CCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCH
Q 037701          152 HRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTA  231 (358)
Q Consensus       152 ~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~  231 (358)
                      .++..|.||||+|+..++.+++++|++.|++ .+.++..|.||||+|+..|+.+++++|++. .+    ++..+..|.||
T Consensus        63 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~----~~~~~~~g~t~  136 (156)
T 1bd8_A           63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD----LHRRDARGLTP  136 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC----TTCCCTTSCCH
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC----CCCcCCCCCCH
Confidence            9999999999999999999999999999987 677899999999999999999999999987 44    77789999999


Q ss_pred             HHHHHHcCcHHHHHHHHhh
Q 037701          232 LHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       232 l~~a~~~~~~~~v~~Ll~~  250 (358)
                      ||+|+..|+.+++++|+++
T Consensus       137 l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          137 LELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999975

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=6.8e-28  Score=185.29  Aligned_cols=160  Identities=21%  Similarity=0.263  Sum_probs=144.2

Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHH
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL  232 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l  232 (358)
                      .+..+.+||+.|++.|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.+    ++..+..|.|||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L   79 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD----VHAKDKGGLVPL   79 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC----CCccCCCCCCHH
Confidence            3567899999999999999999999977766777888999999999999999999999999854    778899999999


Q ss_pred             HHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCC
Q 037701          233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDS  312 (358)
Q Consensus       233 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~  312 (358)
                      |+|+..++.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++|   ++++.+|..|.||||+|.+ ++.+
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~a~~-~~~~  154 (165)
T 3twr_A           80 HNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHG---ADPTKKNRDGNTPLDLVKD-GDTD  154 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCTGGGSCT-TCHH
T ss_pred             HHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCChhHhHhc-CChH
Confidence            999999999999999999876 4889999999999999999999999999998   8999999999999999877 6667


Q ss_pred             c-eeecCCcc
Q 037701          313 S-YFIVPDSD  321 (358)
Q Consensus       313 ~-~~Ll~~g~  321 (358)
                      + ++|++.|+
T Consensus       155 i~~~L~~~gA  164 (165)
T 3twr_A          155 IQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHhhccc
Confidence            7 99998886

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1e-28  Score=201.51  Aligned_cols=175  Identities=17%  Similarity=0.166  Sum_probs=127.9

Q ss_pred             CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHH
Q 037701          155 PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHL  234 (358)
Q Consensus       155 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~  234 (358)
                      ..|.||||.|+..+..+.++.|+++|.+..  .+..+.||||.|+..|+.+++++|++.+++    ++..+..|.||||+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDD----PSLPNDEGITALHN   76 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS----CCCCCTTSCCHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHH
Confidence            458999999999999999999999998853  247789999999999999999999999854    77889999999999


Q ss_pred             HHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCC-hHHHHH--HHhCCC
Q 037701          235 AASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGN-TPLHVL--AAACRD  311 (358)
Q Consensus       235 a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~-tpL~~a--~~~~~~  311 (358)
                      |+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++|   ++++.++..|. ||||+|  +..++.
T Consensus        77 A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCcceecCCCCcchHHHHHHhhhccH
Confidence            9999999999999999876 5889999999999999999999999999999   89999998887 999999  677888


Q ss_pred             Cc-eeecCCcchHHHHhh---------CCCchhhHhhh
Q 037701          312 SS-YFIVPDSDMYEAVNK---------QNTSVEHIVRY  339 (358)
Q Consensus       312 ~~-~~Ll~~g~~~~~~~~---------~g~t~l~~a~~  339 (358)
                      .+ ++|++.|++++..+.         .+.++.+++..
T Consensus       153 ~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          153 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             CHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             HHHHHHHHhhhcccccccceEEEEeccCCCCCCccccc
Confidence            88 999999999988754         47777777754

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=5.9e-27  Score=178.14  Aligned_cols=139  Identities=15%  Similarity=0.107  Sum_probs=68.4

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCc-HH
Q 037701          188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWN-AR  266 (358)
Q Consensus       188 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-~l  266 (358)
                      +..|.||||+|+..|+.+++++|++.|.+    ++..+..|.||||+|+ .|+.+++++|++.+.+ ++.++..|.| ||
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL   82 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGAN----PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPV   82 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCC----TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence            44455555555555555555555555432    4445555555555553 5555555555555443 3455555555 55


Q ss_pred             HHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhh
Q 037701          267 HFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEH  335 (358)
Q Consensus       267 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~  335 (358)
                      |+|+..++.+++++|+++|   ++++.+|..|.||||+|+..++..+ ++|++.|++++.++..|.||.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAG---ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHT---CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHCCCHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            5555555555555555555   5555555555555555555555555 5555555555555555555544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.6e-27  Score=184.68  Aligned_cols=158  Identities=11%  Similarity=0.079  Sum_probs=124.4

Q ss_pred             hhhhcccccCCchhhhhhhhhhccceec-cCCCceehhhhcccccc-ccchHHHHHHHHhhCccchhcccCCCCchhHHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDELVSIAT-HEKNTVLHVNIASQQEG-ERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVA   80 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~-~~~~t~l~~a~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A   80 (358)
                      ++|+.||+.|+.+.++.+++.+ .+..+ ..|.||||+|+..|+.. ..+++++|++    .+++++.+|..|.||||+|
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~-~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG-YEDKESVLKSNILYDVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS-SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCHHHHHHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHHHH
Confidence            5789999999999999999887 55555 78999999999998610 0236777766    6889999999999999999


Q ss_pred             HhcCC------cHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCC-cHHHHHHHHHh--CCcHHHHHHHHh-cCCCC
Q 037701           81 AKCRH------PAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN-TALHEAVQSAA--KGSVEMVAEILE-NCPSA  150 (358)
Q Consensus        81 ~~~~~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~l~~a~~~~~--~~~~~~~~~Ll~-~~~~~  150 (358)
                      +..++      .+++++|+++|++               ++.+|..|. ||||+|+....  .+..+++++|++ .|+++
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad---------------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~  147 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD---------------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL  147 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC---------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC---------------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence            99887      4678888888887               556788888 88888864100  134568888888 88888


Q ss_pred             CCCCCCCccHHHHHHhcCcHHHHHHHHHhC
Q 037701          151 DHRGPDGLTTLHAAVICNAEDVIKLLLEKK  180 (358)
Q Consensus       151 ~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~  180 (358)
                      +.+|..|.||||+|++.++.+++++|.+..
T Consensus       148 ~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          148 LIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             TCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            888888888888888888888888887654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=2e-26  Score=170.92  Aligned_cols=126  Identities=21%  Similarity=0.222  Sum_probs=59.8

Q ss_pred             hcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCC-CCCHH
Q 037701          117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRH-GWTSL  195 (358)
Q Consensus       117 ~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~t~l  195 (358)
                      .+..|.||||+|+..   ++.+++++|++.|++++.++..|.||||+|+. ++.+++++|++.+++ .+.++.. |.|||
T Consensus         8 ~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L   82 (136)
T 1d9s_A            8 LGGSSDAGLATAAAR---GQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRPV   82 (136)
T ss_dssp             CCCCCSCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCHH
T ss_pred             CCCCCccHHHHHHHc---CCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCHH
Confidence            344444444444332   44444444444444444444444455554444 444555555444444 2334444 45555


Q ss_pred             HHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhC
Q 037701          196 HHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       196 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      |+|+..|+.+++++|++.+++    ++.++..|.||||+|+..++.+++++|+++|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGAR----LDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCC----CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            555555555555555544422    3444444555555555555555555555443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=5.5e-26  Score=172.76  Aligned_cols=143  Identities=15%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCC-H
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT-A  231 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~  231 (358)
                      .+..|.||||+|+..|+.+++++|++.|.+ .+.++..|.||||+|+ .|+.+++++|++.|.+    ++.++..|.| |
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~----~~~~d~~g~ttp   81 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE----PNCADPATLTRP   81 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC----CCCCCTTTCCCH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC----CCCcCCCCCcHH
Confidence            345566777777777777777777766655 4556667777777764 6677777777776633    5666777777 7


Q ss_pred             HHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHH
Q 037701          232 LHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL  305 (358)
Q Consensus       232 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a  305 (358)
                      ||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|+++|   ++++.++..|.||.+-+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAA---GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcC---CCCCccCcCcCcccccC
Confidence            7777777777777777777655 4677777888888888888888888888877   77777777777776643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.1e-25  Score=166.92  Aligned_cols=132  Identities=16%  Similarity=0.181  Sum_probs=108.8

Q ss_pred             CCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCC
Q 037701          147 CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDD  226 (358)
Q Consensus       147 ~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  226 (358)
                      +++++..+..|.||||+|+..++.+++++|++.+.+ .+.++..|.||||+|+. ++.+++++|++.+.+    ++.++.
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~----~~~~~~   75 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE----PNCADP   75 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC----SSCCBT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC----CCCcCC
Confidence            357778888888888888888888888888888776 56678888888888888 888888888888744    667777


Q ss_pred             C-CCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          227 R-GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       227 ~-g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      . |.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|+++|
T Consensus        76 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           76 ATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             TTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            7 88888888888888888888888766 4778888888888888888888888888876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=7.4e-26  Score=176.39  Aligned_cols=153  Identities=12%  Similarity=0.065  Sum_probs=102.0

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhc-ccCCcHHHHHHHHHhCCcH----HHHHHHHhcC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVEN-EEKNTALHEAVQSAAKGSV----EMVAEILENC  147 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~----~~~~~Ll~~~  147 (358)
                      ++++|+.|+..|+.+.++.+++.+.+                 ..+ ..|.||||+|+..   ++.    +++++|++.|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~-----------------~~~~~~g~T~Lh~A~~~---~~~~~~~~iv~~Ll~~G   65 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE-----------------DKESVLKSNILYDVLRN---NNDEARYKISMFLINKG   65 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS-----------------CHHHHHTTTHHHHHTTC---SCHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc-----------------cccccCCCCHHHHHHHc---CCcchHHHHHHHHHHCC
Confidence            46788888888888888888876543                 223 6688888888643   543    5888888888


Q ss_pred             CCCCCCCCCCccHHHHHHhcCc------HHHHHHHHHhCCcccccccCCCC-CHHHHHHHcCC-----HHHHHHHhc-CC
Q 037701          148 PSADHRGPDGLTTLHAAVICNA------EDVIKLLLEKKKILTRERDRHGW-TSLHHAAYLGH-----SNITSMMLK-SE  214 (358)
Q Consensus       148 ~~~~~~~~~~~t~l~~a~~~~~------~~~v~~Ll~~~~~~~~~~~~~~~-t~l~~a~~~~~-----~~~~~~Ll~-~~  214 (358)
                      +++|.++..|.||||+|+..++      .+++++|+++|++ ++.+|..|. ||||+|+..+.     .+++++|++ .|
T Consensus        66 advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g  144 (186)
T 3t8k_A           66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG  144 (186)
T ss_dssp             CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC
Confidence            8888888888888888887765      4566666666666 455666666 66666665332     235555555 45


Q ss_pred             CcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          215 DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       215 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      ++    ++.+|..|.||||+|++.|+.+++++|.+.
T Consensus       145 ad----~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          145 LQ----LLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             CC----TTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             CC----CcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            32    455555555555555555555555555543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.1e-24  Score=157.86  Aligned_cols=123  Identities=33%  Similarity=0.505  Sum_probs=69.2

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH  152 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~  152 (358)
                      |.||||+|+..|+.+++++|+++|++               ++..+..|.||||+|+..   ++.+++++|++.|++++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~---------------~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~   63 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD---------------VNAKDKNGRTPLHLAARN---GHLEVVKLLLEAGADVNA   63 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC---------------TTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCC---------------CCCcCCCCCcHHHHHHHc---CcHHHHHHHHHcCCCCcc
Confidence            55666666666666666666655544               223455555666665544   555556666555555555


Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCC
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSE  214 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  214 (358)
                      .+..|.||||+|+..++.+++++|++.|.+ .+.++..|.|||++|+..++.+++++|+++|
T Consensus        64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            555555555555555555555555555544 3344555555555555555555555555554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.1e-24  Score=161.47  Aligned_cols=127  Identities=25%  Similarity=0.389  Sum_probs=89.5

Q ss_pred             hcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHH
Q 037701          117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLH  196 (358)
Q Consensus       117 ~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  196 (358)
                      ....+.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+++ .+.++..|.||||
T Consensus        10 ~~~~~~t~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~   85 (136)
T 2jab_A           10 HGSDLGKKLLEAARA---GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLH   85 (136)
T ss_dssp             --CHHHHHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred             ccccccHHHHHHHHh---CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHH
Confidence            445566777777665   777777777777777777777777777777777777777777777666 4556667777777


Q ss_pred             HHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhC
Q 037701          197 HAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       197 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      +|+..|+.+++++|++.|++    ++..+..|.||||+|+..++.+++++|++.|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGAD----VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCC----CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            77777777777777777643    5566777777777777777777777777653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=7.2e-24  Score=157.09  Aligned_cols=126  Identities=25%  Similarity=0.297  Sum_probs=115.8

Q ss_pred             CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHH
Q 037701          154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH  233 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~  233 (358)
                      ...+.||||+|+..|+.+++++|++.+.+ .+.++..|.||||+|+..++.+++++|++.+.+    ++..+..|.||||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~t~L~   85 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD----VNAVDAIGFTPLH   85 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTCCCHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcCCCCCCCHHH
Confidence            44588999999999999999999999887 577899999999999999999999999999854    7778999999999


Q ss_pred             HHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          234 LAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      +|+..++.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|+++|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999876 4889999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.8e-23  Score=152.92  Aligned_cols=124  Identities=34%  Similarity=0.485  Sum_probs=84.6

Q ss_pred             CCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037701          121 KNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAY  200 (358)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~  200 (358)
                      |.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ .+.++..|.||||+|+.
T Consensus         2 g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            2 GRTPLHLAARN---GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCHHHHHHHH---TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHc---CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHH
Confidence            56777777665   777777777777777777777777777777777777777777776665 44556666777777777


Q ss_pred             cCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCC
Q 037701          201 LGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCP  252 (358)
Q Consensus       201 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~  252 (358)
                      .++.+++++|++.+.+    ++.++..|.||+++|+..++.+++++|+++|+
T Consensus        78 ~~~~~~~~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cChHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            7777777777766633    55556666667777766666667766666654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.6e-25  Score=174.86  Aligned_cols=139  Identities=24%  Similarity=0.267  Sum_probs=86.2

Q ss_pred             CCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC
Q 037701           71 DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA  150 (358)
Q Consensus        71 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~  150 (358)
                      ..|.||||+|+..|+.+++++|++ |++               ++..+..|.||||+|+..   ++.+++++|++.|+++
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------------~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~  102 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRD---------------VDAVDENGRTALLFVAGL---GSDKCVRLLAEAGADL  102 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSC---------------TTCCCTTSCCHHHHHHHH---TCHHHHHHHHHTTCCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCC---------------CCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCC
Confidence            345566666666666666666666 544               334566666666666554   6666666666666666


Q ss_pred             CCCC-CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCC
Q 037701          151 DHRG-PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGM  229 (358)
Q Consensus       151 ~~~~-~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  229 (358)
                      +..+ ..|.||||+|+..++.+++++|++.|++ .+.++..|.||||+|+..++.         .            .+.
T Consensus       103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~---------~------------~~~  160 (183)
T 3deo_A          103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT---------T------------PKG  160 (183)
T ss_dssp             TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT---------C------------CCC
T ss_pred             CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC---------c------------ccc
Confidence            6665 5566666666666666666666666655 445666666666666654322         1            234


Q ss_pred             CHHHHHHHcCcHHHHHHHHhh
Q 037701          230 TALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       230 t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      +|+++|+..|..+++++|.++
T Consensus       161 ~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          161 NPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHcCHHHHHHHHHHh
Confidence            666666666666666666543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=7.6e-25  Score=179.00  Aligned_cols=170  Identities=21%  Similarity=0.185  Sum_probs=134.8

Q ss_pred             cCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHH
Q 037701           31 HEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWI  110 (358)
Q Consensus        31 ~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  110 (358)
                      ..+.+++.++...|+   .+.+..+..    .   ....+..|.||||+|+..|+.+++++|++ |++            
T Consensus        13 ~~~~~~~l~~~~~g~---~~~~~~~~~----~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------------   69 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGH---SPSWVPSSY----I---AADVVSEYETPWWTAARKADEQALSQLLE-DRD------------   69 (244)
T ss_dssp             TTTEEEEEEEESSCC---CCEEEEGGG----S---CHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC------------
T ss_pred             CCCccHHHHHHHcCC---Ccccccccc----c---ccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC------------
Confidence            456677888888887   554433322    1   22234568899999999999999999998 766            


Q ss_pred             HHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCC-CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccC
Q 037701          111 RWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRG-PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDR  189 (358)
Q Consensus       111 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~  189 (358)
                         ++..+..|.||||+|+..   ++.+++++|++.|++++..+ ..|.||||+|+..++.+++++|+++|++ .+.++.
T Consensus        70 ---~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~  142 (244)
T 3ui2_A           70 ---VDAVDENGRTALLFVAGL---GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDE  142 (244)
T ss_dssp             ---TTCBCTTSCBHHHHHHHH---TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             ---CCCcCCCCCCHHHHHHHC---CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCC
Confidence               446788899999999776   89999999999999998888 7789999999999999999999998887 567888


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhC
Q 037701          190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       190 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      .|.||||+|+..+.                     ...+.+||++|+..|+.+++++|++..
T Consensus       143 ~g~t~l~~A~~~~~---------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          143 RGLTALELAREILK---------------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             TCCCHHHHHHHHHT---------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHh---------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            99999999885321                     235778999999999999999988763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=4.7e-25  Score=180.23  Aligned_cols=172  Identities=22%  Similarity=0.198  Sum_probs=143.4

Q ss_pred             CCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC
Q 037701           71 DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA  150 (358)
Q Consensus        71 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~  150 (358)
                      ..+.+++..++..|+.+.+..+...+.+                  .+..|.||||+|+..   ++.++++.|++ |+++
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~------------------~~~~g~t~L~~A~~~---g~~~~v~~Ll~-~~~~   70 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD------------------VVSEYETPWWTAARK---ADEQALSQLLE-DRDV   70 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHH------------------HHHHHHHHHHHHHTT---TCHHHHHHTTT-TCCT
T ss_pred             CCCccHHHHHHHcCCCcccccccccccc------------------cccCCCCHHHHHHHc---CCHHHHHHHHc-CCCC
Confidence            3456777777777776665554433322                  345788999999665   99999999999 9999


Q ss_pred             CCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCC
Q 037701          151 DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT  230 (358)
Q Consensus       151 ~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  230 (358)
                      +.++..|.||||+|+..|+.+++++|++.|++.....+..|.||||+|+..|+.+++++|+++|++    ++..+..|.|
T Consensus        71 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~d~~g~t  146 (244)
T 3ui2_A           71 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD----IEVEDERGLT  146 (244)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCC
T ss_pred             CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCc
Confidence            999999999999999999999999999999985443348899999999999999999999999855    7788999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCcc
Q 037701          231 ALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPY  286 (358)
Q Consensus       231 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  286 (358)
                      |||+|+..+                  ....+.|||++|+..|+.+++++|++.+.
T Consensus       147 ~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          147 ALELAREIL------------------KTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHH------------------TTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHH------------------hccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            999998632                  12457899999999999999999998754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=7.3e-24  Score=157.34  Aligned_cols=115  Identities=23%  Similarity=0.301  Sum_probs=46.4

Q ss_pred             CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHH
Q 037701          154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH  233 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~  233 (358)
                      +..|.||||+|+..++.+++++|++.+.+ .+.++..|.||||+|+..++.+++++|++.+.+    ++..+..|.||||
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~   81 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL----VNTTGYQNDSPLH   81 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCGGGCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc----ccCcCCCCCCHHH
Confidence            33444444444444444444444444333 233333444444444444444444444443322    3333333444444


Q ss_pred             HHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC
Q 037701          234 LAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR  274 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  274 (358)
                      +|+..++.+++++|++.+++ ++.+|..|.||+++|+..+.
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~  121 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESM  121 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccH
Confidence            44444444444444443332 23344444444444443333

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3.9e-23  Score=161.29  Aligned_cols=142  Identities=25%  Similarity=0.254  Sum_probs=125.7

Q ss_pred             hcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCccccccc-CCCCCHH
Q 037701          117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERD-RHGWTSL  195 (358)
Q Consensus       117 ~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~l  195 (358)
                      .+..|.||||+|+..   ++.++++.|++ |.+++..+..|.||||+|+..++.+++++|++.|++. +.++ ..|.|||
T Consensus        40 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL  114 (183)
T 3deo_A           40 VVSEYETPWWTAARK---ADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHHT---TCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHH
T ss_pred             CCCCCCCHHHHHHHc---CCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHH
Confidence            456778999999765   99999999999 9999999999999999999999999999999999885 4455 8999999


Q ss_pred             HHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCCh
Q 037701          196 HHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG  275 (358)
Q Consensus       196 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  275 (358)
                      |+|+..|+.+++++|++.|++    ++.++..|.||||+|+..++.                  ..+.+++++|+..|+.
T Consensus       115 ~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~  172 (183)
T 3deo_A          115 HMAAGYVRPEVVEALVELGAD----IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLE  172 (183)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCC----TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHcCCC----CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHH
Confidence            999999999999999999855    778899999999999874322                  3467999999999999


Q ss_pred             hHHHHHhcCc
Q 037701          276 GVLKSLLENP  285 (358)
Q Consensus       276 ~~~~~Ll~~~  285 (358)
                      +++++|.++.
T Consensus       173 ~i~~~L~~~~  182 (183)
T 3deo_A          173 KVINVLEGQV  182 (183)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHhh
Confidence            9999998753

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=3.2e-23  Score=153.87  Aligned_cols=128  Identities=22%  Similarity=0.282  Sum_probs=115.9

Q ss_pred             hhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHH
Q 037701          116 VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSL  195 (358)
Q Consensus       116 ~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  195 (358)
                      .++..|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ .+.++..|.|||
T Consensus         5 ~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIK---GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHH
Confidence            4788999999999877   999999999999999999999999999999999999999999999887 677899999999


Q ss_pred             HHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhC
Q 037701          196 HHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC  251 (358)
Q Consensus       196 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~  251 (358)
                      |+|+..++.+++++|++.|++    ++.++..|.||+++|+..+..+++++|.+..
T Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYGAS----RNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999999999855    7788999999999999999999888777654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.3e-23  Score=169.51  Aligned_cols=136  Identities=18%  Similarity=0.086  Sum_probs=73.5

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHH
Q 037701          188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARH  267 (358)
Q Consensus       188 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  267 (358)
                      +..|.||||+|+..|+.+++++|++.+.+    ++..+..|.||||+|+..|+.+++++|++....+++.+|..|.||||
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG----VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC----ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            34455666666666666666666665533    45555666666666666666666666666533334556666666666


Q ss_pred             HHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCC
Q 037701          268 FAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQN  330 (358)
Q Consensus       268 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g  330 (358)
                      +|+..|+.+++++|+++|   ++++.+|..|.||||+|+..+...+ +.|+..|++.+..|..|
T Consensus       146 ~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKG---ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHT---CCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHHHcCCHHHHHHHHHcC---CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            666666666666666665   5666666666666666666665555 66666666665555544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.2e-22  Score=169.10  Aligned_cols=144  Identities=15%  Similarity=0.070  Sum_probs=101.1

Q ss_pred             CCCCccHHHHHHhcCcHHHHHHHHHhCCccccc-----ccCCCCCHHHHHHHc---CCHHHHHHHhcCCCcccccccccC
Q 037701          154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRE-----RDRHGWTSLHHAAYL---GHSNITSMMLKSEDDKIVALYKED  225 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~-----~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~  225 (358)
                      .....++|+.|+..++.+.++.|++.+.++...     .+..|.||||+|+..   ++.+++++|++.|++    ++..+
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad----vn~~d  223 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH----LDAKA  223 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC----TTCCC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC----CCCCC
Confidence            334567788888888888777777777664322     567778888888876   677888888887744    66677


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHH
Q 037701          226 DRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL  305 (358)
Q Consensus       226 ~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a  305 (358)
                      ..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|++++   ++      .|.||||+|
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g---a~------~g~tpLh~A  293 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQ---AG------TFAFPLHVD  293 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH---HH------TTSSCCC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CC------CCCChhHHH
Confidence            7788888888888888888888887665 4677788888888888888888888888777   44      467888888


Q ss_pred             HHhCCC
Q 037701          306 AAACRD  311 (358)
Q Consensus       306 ~~~~~~  311 (358)
                      +.+|..
T Consensus       294 ~~~g~~  299 (301)
T 2b0o_E          294 YSWVIS  299 (301)
T ss_dssp             ------
T ss_pred             HhcCCc
Confidence            877643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.6e-22  Score=169.86  Aligned_cols=138  Identities=17%  Similarity=0.087  Sum_probs=113.3

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccc------cCCCCCCHHHHHHHc---CcHHHHHHHHhhCCCCcccc
Q 037701          188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYK------EDDRGMTALHLAASQ---GYERVVRRIIRHCPESYSIV  258 (358)
Q Consensus       188 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~  258 (358)
                      .....++|+.|+..|+.+.++.|+..+.+    ++.      .+..|.||||+|+..   ++.+++++|++++++ ++.+
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d----~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~  222 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQD----FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAK  222 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCC----TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCc----ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCC
Confidence            34456789999999999999988888865    443      577889999999986   788999999998765 5788


Q ss_pred             cCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHh
Q 037701          259 DNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIV  337 (358)
Q Consensus       259 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a  337 (358)
                      |..|.||||+|+..|+.+++++|+++|   ++++.+|..|.||||+|+..++.++ ++|++.|++      .|.|||++|
T Consensus       223 d~~G~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A  293 (301)
T 2b0o_E          223 AADGNTALHYAALYNQPDCLKLLLKGR---ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVD  293 (301)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTT---CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHH
Confidence            889999999999999999999999988   8888899999999999999988888 888888886      688999998


Q ss_pred             hh
Q 037701          338 RY  339 (358)
Q Consensus       338 ~~  339 (358)
                      +.
T Consensus       294 ~~  295 (301)
T 2b0o_E          294 YS  295 (301)
T ss_dssp             --
T ss_pred             Hh
Confidence            76

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=5.7e-23  Score=149.46  Aligned_cols=109  Identities=22%  Similarity=0.323  Sum_probs=58.4

Q ss_pred             cCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHH
Q 037701          120 EKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAA  199 (358)
Q Consensus       120 ~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  199 (358)
                      .|.||||+|+..   ++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+++ .+.++..|.||||+|+
T Consensus         6 ~~~~~l~~A~~~---~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            6 MCDKEFMWALKN---GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV   81 (123)
T ss_dssp             -CHHHHHHHHHT---TCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred             ccchHHHHHHHc---CCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence            444555555433   555555555555555555555555555555555555555555555544 3444555555555555


Q ss_pred             HcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHH
Q 037701          200 YLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA  236 (358)
Q Consensus       200 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~  236 (358)
                      ..++.+++++|++.+++    ++.++..|.||+|+|.
T Consensus        82 ~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGAD----KTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHhC
Confidence            55555555555555532    4445555555555553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=2.6e-22  Score=161.79  Aligned_cols=132  Identities=20%  Similarity=0.268  Sum_probs=108.8

Q ss_pred             HhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHh-CCcccccccCCCCC
Q 037701          115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK-KKILTRERDRHGWT  193 (358)
Q Consensus       115 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t  193 (358)
                      +..+..|.||||+|+..   ++.++++.|++.|++++.++..|.||||+|+..++.+++++|++. +.+ .+.++..|.|
T Consensus        67 ~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~t  142 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKR---GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDT  142 (222)
T ss_dssp             HHHEEEESCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCC
T ss_pred             ccccccccccccccccc---CcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCC
Confidence            35788899999999876   999999999999999999999999999999999999999999988 555 6778888999


Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCC
Q 037701          194 SLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES  254 (358)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~  254 (358)
                      |||+|+..|+.+++++|++.|++    ++.++..|.|||++|+..++.++++.|++.++..
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGAR----TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC----SCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC----CccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            99999999999999999988854    6778888899999998888888888888876553

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=4.3e-22  Score=144.78  Aligned_cols=115  Identities=19%  Similarity=0.144  Sum_probs=102.7

Q ss_pred             CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHH
Q 037701          154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH  233 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~  233 (358)
                      +..|.||||+|+..++.+++++|++.+.+ .+.++..|.||||+|+..++.+++++|++.+.+    ++.++..|.||||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~tpL~   78 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----INAPDKHHITPLL   78 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCTTSCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCcCCCCCCCHHH
Confidence            45688999999999999999999999887 677899999999999999999999999999854    7788999999999


Q ss_pred             HHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC
Q 037701          234 LAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR  274 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  274 (358)
                      +|+..++.+++++|++.+++ ++.+|..|.||+|+|...+.
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHHH
Confidence            99999999999999999876 58899999999999954433

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=9.7e-22  Score=168.77  Aligned_cols=165  Identities=13%  Similarity=0.051  Sum_probs=112.3

Q ss_pred             CCCCccHHHHHHhc-CcHHHHHHHHHhCCccccccc--CCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCC
Q 037701          154 GPDGLTTLHAAVIC-NAEDVIKLLLEKKKILTRERD--RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT  230 (358)
Q Consensus       154 ~~~~~t~l~~a~~~-~~~~~v~~Ll~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  230 (358)
                      ...+.|+||.|+.. ++.+++++|++.|++ .+..+  ..|.||||+|+..|+.+++++|+++|++    ++..+..|.|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad----vn~~d~~G~T  270 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN----VNQADSAGRG  270 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCC
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC----CCCCCCCCCC
Confidence            33466899999999 999999999999888 45556  7899999999999999999999999854    7788999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCC
Q 037701          231 ALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACR  310 (358)
Q Consensus       231 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~  310 (358)
                      |||+|+..|+.+++++|++++++ ++..|..|.||||+|+..++.+++++|++.+.........+..+.|+++++.....
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence            99999999999999999999876 48899999999999999999999999998876545555567778899998877653


Q ss_pred             CCc---eeecCCcchHH
Q 037701          311 DSS---YFIVPDSDMYE  324 (358)
Q Consensus       311 ~~~---~~Ll~~g~~~~  324 (358)
                      ...   +.|...+.+++
T Consensus       350 ~~~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          350 MASDDPEKLSRRSHDLH  366 (368)
T ss_dssp             -----------------
T ss_pred             hcCCCHHHHHhcCCCcC
Confidence            332   66666666554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.2e-21  Score=162.84  Aligned_cols=205  Identities=16%  Similarity=0.105  Sum_probs=145.2

Q ss_pred             hcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHH
Q 037701          117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLH  196 (358)
Q Consensus       117 ~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  196 (358)
                      .|..+.+.++.+..   .|+....+++...-.......+......   .....+-..+++................++|+
T Consensus        62 ~d~~~~~~l~~~~~---~GN~~~n~i~e~~l~~~~~~kP~~~s~~---~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~  135 (278)
T 1dcq_A           62 LDVLGTSELLLAKN---IGNAGFNEIMECCLPSEDPVKPNPGSDM---IARKDYITAKYMERRYARKKHADTAAKLHSLC  135 (278)
T ss_dssp             TSCCCGGGGHHHHH---SCHHHHHHHHTTTCCSSSCCSCCTTCCH---HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHH---cCcHHHHHHHHhhCChhhcCCCCCCCCH---HHHHHHHHHHHHHhhcccccccccchhhhhhh
Confidence            56778889988854   4777666655433222211111111111   11111112223322222212222233456899


Q ss_pred             HHHHcCCHHHHHHHhcCCCccccc--ccccCCCCCCHHHHHHHc---CcHHHHHHHHhhCCCCcccccCCCCcHHHHHHH
Q 037701          197 HAAYLGHSNITSMMLKSEDDKIVA--LYKEDDRGMTALHLAASQ---GYERVVRRIIRHCPESYSIVDNRGWNARHFAMV  271 (358)
Q Consensus       197 ~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~~~~g~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  271 (358)
                      .|+..++.+.++.++..|.+....  ++..+..|.||||+|+..   ++.+++++|++++++ ++.+|..|.||||+|+.
T Consensus       136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHH
T ss_pred             hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHH
Confidence            999999999999999988763322  555678899999999999   899999999999876 58899999999999999


Q ss_pred             cCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhh
Q 037701          272 SLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRY  339 (358)
Q Consensus       272 ~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~  339 (358)
                      .|+.+++++|+++|   ++++.+|..|.||||+|+..++..+ ++|++.|+        +.++++.+..
T Consensus       215 ~g~~~~v~~Ll~~g---ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga--------~~~~~~~~v~  272 (278)
T 1dcq_A          215 TDNAECLKLLLRGK---ASIEIANESGETPLDIAKRLKHEHCEELLTQALS--------GRFNSHVHVE  272 (278)
T ss_dssp             TTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT--------TCCCSSCCCC
T ss_pred             cCCHHHHHHHHHcC---CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCCcceeee
Confidence            99999999999998   8999999999999999999999888 99988877        4566665543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=7.4e-21  Score=130.79  Aligned_cols=90  Identities=34%  Similarity=0.508  Sum_probs=46.6

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH  152 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~  152 (358)
                      |.||||+|+..|+.+++++|++.|++               ++.++..|.||||+|+..   ++.+++++|++.|++++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------~n~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~   63 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD---------------VNAKDKNGRTPLHLAARN---GHLEVVKLLLEAGADVNA   63 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC---------------CcccCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCCCc
Confidence            45555555555555555555555544               223445555555555433   555555555555555555


Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhC
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKK  180 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~  180 (358)
                      ++..|.||||+|+..++.+++++|++.|
T Consensus        64 ~d~~g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5555555555555555555555555544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=2.6e-21  Score=138.85  Aligned_cols=106  Identities=21%  Similarity=0.265  Sum_probs=64.7

Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHH
Q 037701          224 EDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH  303 (358)
Q Consensus       224 ~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~  303 (358)
                      +|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..++.+++++|+++|   ++++.+|..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG---ADVNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT---CCTTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC---CCCcccCCCCCCHHH
Confidence            355566666666666666666666666544 3555666666666666666666666666665   556666666666666


Q ss_pred             HHHHhCCCCc-eeecCCcchHHHHhhCCCch
Q 037701          304 VLAAACRDSS-YFIVPDSDMYEAVNKQNTSV  333 (358)
Q Consensus       304 ~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~  333 (358)
                      +|+..++..+ ++|++.|+|++.++..|.+|
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            6666665555 66666666666666666655

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=7.2e-20  Score=152.02  Aligned_cols=125  Identities=18%  Similarity=0.137  Sum_probs=94.2

Q ss_pred             CccHHHHHHhcCcHHHHHHHHHhCCccc-----ccccCCCCCHHHHHHHc---CCHHHHHHHhcCCCcccccccccCCCC
Q 037701          157 GLTTLHAAVICNAEDVIKLLLEKKKILT-----RERDRHGWTSLHHAAYL---GHSNITSMMLKSEDDKIVALYKEDDRG  228 (358)
Q Consensus       157 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~-----~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~g  228 (358)
                      ..++|+.|+..+..+.++.++..|.+..     +..+..|.||||+|+..   ++.+++++|++.|++    ++.++..|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~----in~~d~~g  205 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN----LDKQTGKG  205 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC----TTCCCTTC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC----ccccCCCC
Confidence            3467778888888887777777776642     23367778888888877   777888888887744    66677788


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCcc
Q 037701          229 MTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPY  286 (358)
Q Consensus       229 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  286 (358)
                      .||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|.
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8888888888888888888887665 47777888888888888888888888887774

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=9.2e-20  Score=125.27  Aligned_cols=91  Identities=33%  Similarity=0.472  Sum_probs=66.5

Q ss_pred             CCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHH
Q 037701          121 KNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAY  200 (358)
Q Consensus       121 ~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~  200 (358)
                      |.||||+|+..   ++.+++++|++.|++++.++..|.||||+|+..++.+++++|++.|++ .+.++..|.||||+|+.
T Consensus         2 g~t~L~~A~~~---~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            2 GRTPLHLAARN---GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             -CCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            56777777665   777777777777777777777777777777777777777777777766 45667777777777777


Q ss_pred             cCCHHHHHHHhcCCC
Q 037701          201 LGHSNITSMMLKSED  215 (358)
Q Consensus       201 ~~~~~~~~~Ll~~~~  215 (358)
                      .|+.+++++|++.|+
T Consensus        78 ~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence            777777777777664

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=9.8e-20  Score=156.32  Aligned_cols=148  Identities=20%  Similarity=0.204  Sum_probs=116.1

Q ss_pred             hcccCCcHHHHHHHHHhC-CcHHHHHHHHhcCCCCCCCC--CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCC
Q 037701          117 ENEEKNTALHEAVQSAAK-GSVEMVAEILENCPSADHRG--PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWT  193 (358)
Q Consensus       117 ~~~~~~t~l~~a~~~~~~-~~~~~~~~Ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t  193 (358)
                      ....+.|+||.|   +.. ++.++++.|++.|++++..+  ..|.||||+|+..++.+++++|++.|++ .+..+..|.|
T Consensus       195 ~~~~~~t~L~~A---a~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~T  270 (368)
T 3jue_A          195 GSLHPGALLFRA---SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRG  270 (368)
T ss_dssp             --CCHHHHHHHH---TSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             ccCCCCcHHHHH---HHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            344566899999   556 99999999999999999988  7899999999999999999999999988 6788999999


Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCc--ccccCCCCcHHHHHHH
Q 037701          194 SLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESY--SIVDNRGWNARHFAMV  271 (358)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~l~~a~~  271 (358)
                      |||+|+..|+.+++++|++.|++    ++..+..|.||||+|+..++.+++++|+..+....  ...+..+.|+++.+..
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad----~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGAD----LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            99999999999999999999855    78889999999999999999999999998763321  2344567777777654


Q ss_pred             c
Q 037701          272 S  272 (358)
Q Consensus       272 ~  272 (358)
                      .
T Consensus       347 ~  347 (368)
T 3jue_A          347 F  347 (368)
T ss_dssp             -
T ss_pred             H
Confidence            3

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=4.6e-20  Score=132.28  Aligned_cols=109  Identities=23%  Similarity=0.290  Sum_probs=90.8

Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcH
Q 037701          186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA  265 (358)
Q Consensus       186 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  265 (358)
                      .++..|.||||+|+..|+.+++++|++.+.+    ++..+..|.||||+|+..++.+++++|++.+++ ++.+|..|.||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD----VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTP   78 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC----SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCH
Confidence            4577888999999998999999999888754    677788889999999999999999999988766 47788889999


Q ss_pred             HHHHHHcCChhHHHHHhcCccccccccCCCCCCChHH
Q 037701          266 RHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL  302 (358)
Q Consensus       266 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL  302 (358)
                      ||+|+..++.+++++|+++|   ++++.++..|.+|-
T Consensus        79 l~~A~~~~~~~~~~~Ll~~g---a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKG---ADVNARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTS---SSHHHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHHHHHcC---CCCCcCCccccccc
Confidence            99999999999999999988   88888888888773

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=5.1e-18  Score=120.33  Aligned_cols=90  Identities=23%  Similarity=0.330  Sum_probs=42.7

Q ss_pred             hcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHH
Q 037701          117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLH  196 (358)
Q Consensus       117 ~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  196 (358)
                      .+.+|.||||+|+..   ++.+++++|++.|++++.++..|.||||+|+..++.+++++|++.|++ .+.++..|.||||
T Consensus        20 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~   95 (110)
T 2zgd_A           20 MGSDLGKKLLEAARA---GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFD   95 (110)
T ss_dssp             --CCHHHHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             cCCccchHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHH
Confidence            344444445544433   444555555544444444444455555555555555555555544444 3344444555555


Q ss_pred             HHHHcCCHHHHHHH
Q 037701          197 HAAYLGHSNITSMM  210 (358)
Q Consensus       197 ~a~~~~~~~~~~~L  210 (358)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            55555555544443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=6.8e-17  Score=114.48  Aligned_cols=92  Identities=26%  Similarity=0.420  Sum_probs=82.4

Q ss_pred             CCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCC
Q 037701          151 DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT  230 (358)
Q Consensus       151 ~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  230 (358)
                      ...+.+|.||||+|+..++.+++++|++.+++ .+.++..|.||||+|+..|+.+++++|++.|++    ++.++..|.|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~t   92 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----VXAQDKFGKT   92 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccccCCCc
Confidence            34577899999999999999999999999887 677899999999999999999999999999854    7788999999


Q ss_pred             HHHHHHHcCcHHHHHHH
Q 037701          231 ALHLAASQGYERVVRRI  247 (358)
Q Consensus       231 ~l~~a~~~~~~~~v~~L  247 (358)
                      |||+|+..|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 7e-21
 Identities = 63/288 (21%), Positives = 98/288 (34%), Gaps = 60/288 (20%)

Query: 75  TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAK 134
           TPLHVA+   H  +V+ L          L+ G         V N +  T LH A   A  
Sbjct: 2   TPLHVASFMGHLPIVKNL----------LQRGAS-----PNVSNVKVETPLHMA---ARA 43

Query: 135 GSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTR--------- 185
           G  E+   +L+N    + +  D  T LH A      +++KLLLE                
Sbjct: 44  GHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 103

Query: 186 -----------------------ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY 222
                                     + G+T LH AA  G   +  ++L+ +        
Sbjct: 104 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH----PN 159

Query: 223 KEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLL 282
                G+T LH+A       +V+ ++      +S     G+   H A    +  V +SLL
Sbjct: 160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVEVARSLL 218

Query: 283 ENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQN 330
           +        +     G TPLH+  AA    +  +          N  N
Sbjct: 219 QYGGS---ANAESVQGVTPLHL--AAQEGHAEMVALLLSKQANGNLGN 261

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 7e-19
 Identities = 55/253 (21%), Positives = 94/253 (37%), Gaps = 39/253 (15%)

Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI 182
           T LH A   +  G + +V  +L+   S +       T LH A      +V K LL+ K  
Sbjct: 2   TPLHVA---SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 183 LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKE------------------ 224
           +   + +   T LH AA +GH+N+  ++L++  +  +A                      
Sbjct: 59  VN-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 117

Query: 225 -----------DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL 273
                        +G T LH+AA  G  RV   ++       +     G    H A+   
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHN 176

Query: 274 RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAA-CRDSSYFIVPDSDMYEAVNKQNTS 332
              ++K LL         H    NG TPLH+ A     + +  ++       A + Q  +
Sbjct: 177 NLDIVKLLLPRG---GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT 233

Query: 333 VEHI-VRYGYPEL 344
             H+  + G+ E+
Sbjct: 234 PLHLAAQEGHAEM 246

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (208), Expect = 8e-19
 Identities = 69/365 (18%), Positives = 127/365 (34%), Gaps = 60/365 (16%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRH 85
            +++  +  T LH  +A++       TE  + +L+    +  +  D   TPLH AA+  H
Sbjct: 26  PNVSNVKVETPLH--MAARAG----HTEVAKYLLQNKAKVNAKAKD-DQTPLHCAARIGH 78

Query: 86  PAVVEVLIKFAKKQSRELESGV---------------DWIRWMLLVENEEKNTALHEAVQ 130
             +V++L++     +    +G                  +      +             
Sbjct: 79  TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 138

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRH 190
           +A  G V +   +LE     +  G +GLT LH AV  N  D++KLLL +          +
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWN 197

Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
           G+T LH AA      +   +L+           E  +G+T LHLAA +G+  +V  ++  
Sbjct: 198 GYTPLHIAAKQNQVEVARSLLQYGGSA----NAESVQGVTPLHLAAQEGHAEMVALLLSK 253

Query: 251 CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN-------------------------- 284
                ++ +  G    H         V   L+++                          
Sbjct: 254 QAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 312

Query: 285 ----PYVISLIHGRDKNGNTPLHVLAAACRDS--SYFIVPDSDMYEAVNKQNTSVEHIVR 338
                   + ++ + K G +PLH  A        +  +   +   E  +   T +    R
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 372

Query: 339 YGYPE 343
            GY  
Sbjct: 373 LGYIS 377

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 2e-16
 Identities = 56/250 (22%), Positives = 95/250 (38%), Gaps = 27/250 (10%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIK------------------FAKKQSRELESGVDWI 110
               G TPLHVA    +  +V++L+                    AK+   E+   +   
Sbjct: 161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220

Query: 111 RWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAE 170
                 E+ +  T LH A Q   +G  EMVA +L    + +     GLT LH        
Sbjct: 221 GGSANAESVQGVTPLHLAAQ---EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 277

Query: 171 DVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT 230
            V  +L++   ++     R G+T LH A++ G+      ++K        +  +   G +
Sbjct: 278 PVADVLIKHG-VMVDATTRMGYTPLHVASHYGNI----KLVKFLLQHQADVNAKTKLGYS 332

Query: 231 ALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISL 290
            LH AA QG+  +V  ++++   S + V + G      A       V   L       S 
Sbjct: 333 PLHQAAQQGHTDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF 391

Query: 291 IHGRDKNGNT 300
           +   DK+  +
Sbjct: 392 VLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 6e-15
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 23/187 (12%)

Query: 59  LEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVEN 118
           L          + +G TPLH+AA+  H  +V +               +   +    + N
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL---------------LLSKQANGNLGN 261

Query: 119 EEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLE 178
           +   T LH   Q   +G V +   ++++    D     G T LH A       ++K  L 
Sbjct: 262 KSGLTPLHLVAQ---EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLL 317

Query: 179 KKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ 238
           + +     + + G++ LH AA  GH++I +++LK+         +    G T L +A   
Sbjct: 318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS----PNEVSSDGTTPLAIAKRL 373

Query: 239 GYERVVR 245
           GY  V  
Sbjct: 374 GYISVTD 380

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 1e-13
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 40/181 (22%)

Query: 158 LTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDK 217
           LT LH A       ++K LL++        +    T LH AA  GH+ +   +L+++   
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAK- 58

Query: 218 IVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESY---------------------- 255
              +  +     T LH AA  G+  +V+ ++ +                           
Sbjct: 59  ---VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

Query: 256 ----------SIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL 305
                     + +  +G+   H A    +  V + LLE     +  +   KNG TPLHV 
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD---AHPNAAGKNGLTPLHVA 172

Query: 306 A 306
            
Sbjct: 173 V 173

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (208), Expect = 2e-19
 Identities = 53/281 (18%), Positives = 96/281 (34%), Gaps = 31/281 (11%)

Query: 29  ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAV 88
           A  E N +L    A Q E      + V+ +LE   ++  Q  + G TPLH A +     +
Sbjct: 1   AAVEDNHLLI--KAVQNE----DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI 54

Query: 89  VEVLIKFAKKQSRELESGVDWIRW------------------MLLVENEEKNTALHEAVQ 130
           VE+L++         ++G                         +   +    TA  EA  
Sbjct: 55  VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114

Query: 131 SAAKGSVEMVAEILENCPSADHR-------GPDGLTTLHAAVICNAEDVIKLLLEKKKIL 183
                +++ + +   N                 G T L  A      +V+K+LL++    
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 184 TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERV 243
               D  G  +L HA      +    +     D    +    +RG T L LA  + +  +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 244 VRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
           V+R++       +  D+ G  A   A+      + + L + 
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 1e-16
 Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 31/242 (12%)

Query: 72  KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS 131
           + +  L  A +     +V+ L          LE G +    +   E E   T LH AVQ 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQL----------LEGGAN----VNFQEEEGGWTPLHNAVQ- 48

Query: 132 AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHG 191
                 ++V  +L +      R  +G T    A I  +  ++KL L K      E D +G
Sbjct: 49  --MSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYG 105

Query: 192 WTSLHHAAYLGHSNITSMMLKSE------DDKIVALYKEDDRGMTALHLAASQGYERVVR 245
           +T+   AA  G       + K                +    G TAL  AA +G+  V++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGG----VLKSLLENPYVISLIHGRDKNGNTP 301
            ++       +  DN G NA   A++S        +   LL++   +++   R + G TP
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV---RGERGKTP 222

Query: 302 LH 303
           L 
Sbjct: 223 LI 224

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.7 bits (195), Expect = 2e-17
 Identities = 40/253 (15%), Positives = 89/253 (35%), Gaps = 42/253 (16%)

Query: 22  KDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVN----DKGDTPL 77
           ++   S+     N       ++QQ+        ++ + +  P+  L +N    + G+TPL
Sbjct: 52  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 111

Query: 78  HVAAKCRHPAVVEVLIK----------------------FAKKQSRELESGVDWIRWMLL 115
           H      +  +V+ L+K                           S   E+ +D++   L+
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 171

Query: 116 VENEEKNTALHEAVQSAAKGSVEMVAE----------ILENCPSADHRGPDGLTTLHAAV 165
           +E+    T LH  + ++        A+          + +          +  +  +   
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231

Query: 166 ICNAEDVIKLLLEKKKI--LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYK 223
               + +++ L  K  I  +   +D +G T L+ AA LG+ +I   +L    D     + 
Sbjct: 232 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD----PFI 287

Query: 224 EDDRGMTALHLAA 236
            +  G+  +   A
Sbjct: 288 ANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 13/163 (7%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED 215
            G T LH        +++K L++         D  G + L  A    ++  +       D
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 216 DKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESY------------SIVDNRGW 263
                L  ED    T LH               ++  +                  N   
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 264 NARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
           +  +      +  +L++L     + ++++ +D NG+T L++ A
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (183), Expect = 4e-16
 Identities = 59/252 (23%), Positives = 88/252 (34%), Gaps = 28/252 (11%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
           V + GDT LH+A   +H   ++ L          L          L ++N+   TALH A
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFL----------LGFSAGHEY--LDLQNDLGQTALHLA 52

Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEK--------- 179
              A  G    V ++             G T LH A    A     +LL+          
Sbjct: 53  ---AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

Query: 180 KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG 239
              LT+ +D    TS   AA     N  +     ++D  + L  E+  G T LH+A    
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169

Query: 240 YERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGN 299
              +VR +     +        G    H A+ +    VL+ LL+     +    R   G 
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA---RMYGGR 226

Query: 300 TPLHVLAAACRD 311
           TPL   A    +
Sbjct: 227 TPLG-SALLRPN 237

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 48/248 (19%), Positives = 81/248 (32%), Gaps = 41/248 (16%)

Query: 34  NTVLHVNIASQQEGERVSTEFVEGILEMC--PSLLLQVNDKGDTPLHVAAKCRHPAVVEV 91
           +T LH  +A   +       F++ +L        L   ND G T LH+AA     + VE 
Sbjct: 10  DTALH--LAVIHQ----HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 92  LIKFAKKQSRE-----------------------LESGVDWIR-----WMLLVENEEKNT 123
           L                                 L+      R     ++   ++   +T
Sbjct: 64  LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 124 ALHEAVQSAAKGSVEMVAEILENCP-SADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI 182
           +   A   +            E+     +    DG T LH AVI    ++++LL +    
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 183 LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
           L +     G T LH A     +++  ++LK+  D           G T L  A  +    
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD----PTARMYGGRTPLGSALLRPNPI 239

Query: 243 VVRRIIRH 250
           + R +  H
Sbjct: 240 LARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 17/94 (18%), Positives = 29/94 (30%)

Query: 258 VDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIV 317
           V   G  A H A++      L  LL        +  ++  G T LH+ A     S+   +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 318 PDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSLL 351
             +     V ++       +            LL
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.2 bits (176), Expect = 1e-14
 Identities = 37/287 (12%), Positives = 78/287 (27%), Gaps = 45/287 (15%)

Query: 26  VSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRH 85
                 +   +    +A+   G   + + +  +L     ++  +  +      +AA+  H
Sbjct: 83  AHKKGIKSEVICF--VAAI-TGCSSALDTLCLLLT-SDEIVKVIQAENYQAFRLAAENGH 138

Query: 86  PAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILE 145
             V+  L           E     I  M      E   A   A ++     +  + E+  
Sbjct: 139 LHVLNRLC----------ELAPTEIMAM---IQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 146 NCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSN 205
              +A  +  +      AAV     +VI  LL+               +  H    G   
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--------PVMLAYAEIHEFEYGEKY 237

Query: 206 ITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNA 265
           +   + +  +               A  L+   G   +V +          +        
Sbjct: 238 VNPFIARHVN--------RLKEMHDAFKLSNPDGVFDLVTKSE-------CLQGFYMLRN 282

Query: 266 RHFAMVSLRGGVLKSLLENPYVISLIH--GRDKNGNTPLHVLAAACR 310
                  +    ++ LL  P + +L        + N  L +   A R
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL---ALR 326

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 65.3 bits (158), Expect = 2e-12
 Identities = 23/244 (9%), Positives = 62/244 (25%), Gaps = 23/244 (9%)

Query: 66  LLQVNDKGDTPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVENEEKNTA 124
           L+ ++ K    + +        V ++L  + A       +   D        +  +    
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSD-----AHKKGIKSEVI 93

Query: 125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK-KIL 183
              A  +    +++ +  +L +         +       A       V+  L E     +
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 153

Query: 184 TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERV 243
                   + +   AA  GH ++ + + +           + +        A  +G+  V
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNV 212

Query: 244 VRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
           +  ++                A           V   +  +         R K  +    
Sbjct: 213 INFLLDC--------PVMLAYAEIHEFEYGEKYVNPFIARH-------VNRLKEMHDAFK 257

Query: 304 VLAA 307
           +   
Sbjct: 258 LSNP 261

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.0 bits (139), Expect = 4e-10
 Identities = 34/247 (13%), Positives = 72/247 (29%), Gaps = 36/247 (14%)

Query: 20  IAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ-VNDKGDTPLH 78
           +  DE+V +   E        +A++          +  + E+ P+ ++  +  +      
Sbjct: 113 LTSDEIVKVIQAENYQAFR--LAAENG----HLHVLNRLCELAPTEIMAMIQAENYHAFR 166

Query: 79  VAAKCRHPAVVEVLIKFAKKQ--------------SRELESGVDWIRWMLLVENEEKNTA 124
           +AA+  H  V+  L + A  +                 +  G   +   LL        A
Sbjct: 167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA 226

Query: 125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT 184
                     G   +   I  +         + L  +H A   +  D +  L+ K + L 
Sbjct: 227 EIHE---FEYGEKYVNPFIARHV--------NRLKEMHDAFKLSNPDGVFDLVTKSECL- 274

Query: 185 RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA-LYKEDDRGMTALHLAASQGYERV 243
             +  +   +L         +    +L     K +A            L LA   G +  
Sbjct: 275 --QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA 332

Query: 244 VRRIIRH 250
              ++  
Sbjct: 333 CALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 18/134 (13%)

Query: 65  LLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW---------MLL 115
            LL              +     V   + +   +    L+   D  +          +  
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNPDGVFDLVTK 270

Query: 116 VENEEKNTALHEAVQSAAKGSVEMVAEILE-----NCPSADHRGPDGLTTLHAAVICNAE 170
            E  +    L   ++   +  ++ +  +L                D    L  A+    +
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

Query: 171 DVIKLLLEKKKILT 184
               LLL    +L 
Sbjct: 331 GACALLLSIPSVLA 344

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 2e-13
 Identities = 43/214 (20%), Positives = 72/214 (33%), Gaps = 27/214 (12%)

Query: 53  EFVEGILEMCPSLLLQVNDKGDTPLHVAAK-----------CRHPAVVEVLIKFAKKQSR 101
           E ++  +    SL  + +    T LH A                  V +           
Sbjct: 17  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI 76

Query: 102 ELESGVDWIRWMLL-------VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRG 154
              +G D I   LL         N+   T LH    +A+K   E+   +LE   + D + 
Sbjct: 77  AASAGRDEIVKALLGKGAQVNAVNQNGCTPLH---YAASKNRHEIAVMLLEGGANPDAKD 133

Query: 155 PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSE 214
               T +H A       +I +LL  K      +D  G T LH A          +++   
Sbjct: 134 HYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQG 192

Query: 215 DDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
                 +Y E+    T L +A   G   +++R++
Sbjct: 193 AS----IYIENKEEKTPLQVAKG-GLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
           +++  TALH A    + G  E+V  +L+     + +   G + LH A     ++++K LL
Sbjct: 34  DQDSRTALHWA---CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 90

Query: 178 EKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
            K   +    +++G T LH+AA      I  M+L+   +       +D    TA+H AA+
Sbjct: 91  GKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYEATAMHRAAA 145

Query: 238 QGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKN 297
           +G  +++  ++ +   +  I D  G    H A    R    K L+      + I+  +K 
Sbjct: 146 KGNLKMIHILLYYKASTN-IQDTEGNTPLHLACDEERVEEAKLLVSQG---ASIYIENKE 201

Query: 298 GNTPLHV 304
             TPL V
Sbjct: 202 EKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 4e-10
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 54  FVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWM 113
            +   L    + +  VN  G TPLH AA      +  +L          LE G +     
Sbjct: 84  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML----------LEGGAN----- 128

Query: 114 LLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVI 173
              ++  + TA+H A     KG+++M+  +L    S + +  +G T LH A      +  
Sbjct: 129 PDAKDHYEATAMHRAAA---KGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 185

Query: 174 KLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLK 212
           KLL+ +   +    ++   T L  A   G   I   M++
Sbjct: 186 KLLVSQGASIY-IENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 4e-08
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 13/191 (6%)

Query: 166 ICNA-----EDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA 220
           +CN       + +K  +   K L    D+   T+LH A   GH+ I   +L+        
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV--- 63

Query: 221 LYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKS 280
              +DD G + LH+AAS G + +V+ ++    +  + V+  G    H+A    R  +   
Sbjct: 64  -NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 281 LLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYG 340
           LLE     +    +D    T +H  AA        I+        +     +    +   
Sbjct: 122 LLEGG---ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 178

Query: 341 YPELEVIPSLL 351
              +E    L+
Sbjct: 179 EERVEEAKLLV 189

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.8 bits (151), Expect = 7e-12
 Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 24/258 (9%)

Query: 58  ILEMCPSLLLQVNDK--GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLL 115
           I E      + + D     T LH  A        E LI    K+   + +G D     + 
Sbjct: 16  ITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE--CIAAGAD-----VN 68

Query: 116 VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKL 175
             + ++NT L  AV         +VA +++             + LH A       ++  
Sbjct: 69  AMDCDENTPLMLAVL---ARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 125

Query: 176 LLEKKKILTRERDRHGWTSLHH--AAYLGHSNITSMM-------LKSEDDKIVALYKEDD 226
           +L   K+     +            A+    +  +          K + D       E  
Sbjct: 126 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 185

Query: 227 RGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPY 286
           +G TALH AA      +V+ ++     +    D  G      A    R  V+  L++   
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG- 244

Query: 287 VISLIHGRDKNGNTPLHV 304
             + +   D   +T   +
Sbjct: 245 --ASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.4 bits (137), Expect = 4e-10
 Identities = 43/277 (15%), Positives = 80/277 (28%), Gaps = 46/277 (16%)

Query: 9   AAKGEIEPFNEIAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQ 68
            A G       I ++ +  I      TVLH    +       S E  E ++       + 
Sbjct: 9   EAAGSYAITEPITRESVNIIDPRHNRTVLH--WIASNS----SAEKSEDLIVHEAKECIA 62

Query: 69  -------VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEK 121
                  ++   +TPL +A   R   +V  L+K     +   +S    +       +   
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM 122

Query: 122 NTALHEAVQSAAKGSVEMVAEILENCPSA-----------------------------DH 152
              +  + +            +      A                             D 
Sbjct: 123 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 182

Query: 153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLK 212
               G T LH A   +   ++K L+ +K     ++D  G T +  AA  G   +   +++
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 213 SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
                   +   D    TA  LA +  +  +V    R
Sbjct: 243 QGAS----VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEE 120
              +       KG T LH AA+  +  +V+ L+                       ++E+
Sbjct: 175 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV--------------GEKGSNKDKQDED 220

Query: 121 KNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK 180
             T +  A Q   +G +E+V  +++   S +       T    A   N  +++ +    +
Sbjct: 221 GKTPIMLAAQ---EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 19/106 (17%)

Query: 42  ASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSR 101
           A     +  +   V+ ++    S   + ++ G TP+ +AA+     VV  LI        
Sbjct: 190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-------- 241

Query: 102 ELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC 147
             + G       +   +   +TA   A          +V +I + C
Sbjct: 242 --QQGAS-----VEAVDATDHTARQLAQA---NNHHNIV-DIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 13/86 (15%)

Query: 193 TSLH-HAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC 251
           + +  H    G   IT  + +   +       +     T LH  AS         +I H 
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVN-----IIDPRHNRTVLHWIASNSSAEKSEDLIVHE 56

Query: 252 PESY-------SIVDNRGWNARHFAM 270
            +         + +D         A+
Sbjct: 57  AKECIAAGADVNAMDCDENTPLMLAV 82

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 2e-11
 Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 19/231 (8%)

Query: 74  DTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAA 133
           + PLH A        V+ L+                    LL ++++    LH +V   A
Sbjct: 1   NYPLHQACMENEFFKVQELLH---------SKPSL-----LLQKDQDGRIPLHWSVSFQA 46

Query: 134 KGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWT 193
                 +   +EN    D+    G T  H A      +V+K L ++       +  +   
Sbjct: 47  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 106

Query: 194 SLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPE 253
           +  H A        S  L      +     +D      LH AAS G  +++  +      
Sbjct: 107 TCLHLAVGKKWFEVSQFLIENGASV---RIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 163

Query: 254 SYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
           + +  D +GW     A+    G     L+E           D  G     V
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA--EYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 3e-11
 Identities = 43/251 (17%), Positives = 81/251 (32%), Gaps = 26/251 (10%)

Query: 34  NTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLI 93
           N  LH   A  +         V+ +L   PSLLLQ +  G  PLH +   +   +   L+
Sbjct: 1   NYPLH--QACMEN----EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL 54

Query: 94  KFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR 153
              +  + +            +  +                    + +          ++
Sbjct: 55  SKMENVNLDDYPDDSGWTPFHIACSVGNLE--------------VVKSLYDRPLKPDLNK 100

Query: 154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKS 213
             +   T     +      +   L +     R +D+     LH AA +G   +  ++   
Sbjct: 101 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 160

Query: 214 EDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL 273
               +     +D +G T L  A ++G+      ++      Y +VDN+G  A   A+   
Sbjct: 161 GKSAV---NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL--- 214

Query: 274 RGGVLKSLLEN 284
              V K  L N
Sbjct: 215 NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 3/172 (1%)

Query: 159 TTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKI 218
             LH A + N    ++ LL  K  L  ++D+ G   LH +       ITS +L   ++  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 219 VALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVL 278
           +  Y +D          +    E V     R      + + N+G    H A+      V 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 279 KSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQN 330
           + L+EN      +  +DK    PLH  A+        ++          +  
Sbjct: 122 QFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 170

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-10
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 71  DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQ 130
           + GDTPLH+A    +   V  L+          + G +     L + N  + T LH AV 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNL------FQQGGRE-----LDIYNNLRQTPLHLAVI 49

Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRH 190
           +     V ++     +  + D  G                  +        +    R+  
Sbjct: 50  TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 109

Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
           G T+LH A          ++L+   D        D +   +  + A +     + +++  
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADI----DAVDIKSGRSPLIHAVENNSLSMVQLLLQ 165

Query: 251 CPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
              + +     G +A H A       ++++L+ +    SL   ++ + +TPL V
Sbjct: 166 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL---KNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 34/235 (14%)

Query: 34  NTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVN---DKGDTPLHVAAKCRHPAVVE 90
           +T LH  IA  Q     +   V  ++ +      +++   +   TPLH+A     P+VV 
Sbjct: 4   DTPLH--IAVVQG----NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 57

Query: 91  VLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAE-------- 142
           +L+            G           +     AL ++             +        
Sbjct: 58  LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 117

Query: 143 ------------ILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRH 190
                       +             G + L  AV  N+  +++LLL+        +   
Sbjct: 118 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYS 176

Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
           G ++LH A+  G   +   +++S  D       ++    T L +A S+    ++R
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDILR 227

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 1e-09
 Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 19/227 (8%)

Query: 34  NTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLI 93
           ++ LH  +A   E + ++ E +  +     + L   N+   TPLH+A     P + E L+
Sbjct: 3   DSFLH--LAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 59

Query: 94  KFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR 153
                       G   +              L ++  +                      
Sbjct: 60  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP------------HLHSILKAT 107

Query: 154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKS 213
             +G T LH A I     +++LL+     +  +   +G T+LH A  L + ++ S++LK 
Sbjct: 108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 167

Query: 214 EDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDN 260
             D      +   +G +   L   +   R+ +++ +   E+  ++  
Sbjct: 168 GADV----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 6/194 (3%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEK---KKILTRERDRHGWTSLHHAAYLGHSNITSMMLK 212
           DG + LH A+I   + +   ++ +          ++    T LH A       I   +L 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 213 SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVS 272
           +  D  +  ++ +     A           + +        S     N   +     + S
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH-LAS 119

Query: 273 LRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDS--SYFIVPDSDMYEAVNKQN 330
           + G +    L       +      NG T LH+          S  +   +D+     +  
Sbjct: 120 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 179

Query: 331 TSVEHIVRYGYPEL 344
           +  +         +
Sbjct: 180 SPYQLTWGRPSTRI 193

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 6/40 (15%), Positives = 14/40 (35%)

Query: 69  VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVD 108
           V  +G +P  +        + + L +   +  + L    D
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 213

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 3e-09
 Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 21/211 (9%)

Query: 51  STEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWI 110
           + + +  +L     L   ++  G+T LH+AA+       + L+      + +  +G   +
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 111 RWMLLVENEEKNTALHEAVQSAAKG----------------SVEMVAEILENCPSADHRG 154
              +  +       L     +                       MV +++      +   
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 120

Query: 155 PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSE 214
             G T LH A   N  + + +LL         +D    T L  AA  G    +  +L + 
Sbjct: 121 NSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 215 DDKIVALYKEDDRGMTALHLAASQGYERVVR 245
            +        D        +A+ + +  +VR
Sbjct: 180 AN----REITDHMDRLPRDVASERLHHDIVR 206

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 11/187 (5%)

Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
           ++   T+LH A   A     +    +L+    A+ +   G T LHAAV  +A  V ++LL
Sbjct: 20  DKTGETSLHLA---ARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILL 76

Query: 178 EKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
             +      R   G T L  AA L    +   ++ ++ D    +   D+ G TALH AA+
Sbjct: 77  RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD----INAADNSGKTALHWAAA 132

Query: 238 QGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKN 297
                 V  ++ H        D++       A         K+LL+N     +    D  
Sbjct: 133 VNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFANREI---TDHM 188

Query: 298 GNTPLHV 304
              P  V
Sbjct: 189 DRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 7/132 (5%)

Query: 172 VIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTA 231
           VI  LL +   L    D+ G TSLH AA    ++     L        +        + A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAA-KRLLDAGADANSQDNTGRTPLHA 62

Query: 232 LHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLI 291
              A + G  +++ R       +                +      L +   +      I
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD------I 116

Query: 292 HGRDKNGNTPLH 303
           +  D +G T LH
Sbjct: 117 NAADNSGKTALH 128

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 9/147 (6%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVE-NEEKNTALHEAVQS 131
               LH   +      +  L++           GVD    + L   +E   TALH AV+S
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQA-------YADGVDLTEKIPLANGHEPDETALHLAVRS 55

Query: 132 AAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHG 191
             + S+ +V + L        +     +T               LL + K      +  G
Sbjct: 56  VDRTSLHIV-DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG 114

Query: 192 WTSLHHAAYLGHSNITSMMLKSEDDKI 218
            T L  A  L H +   ++ ++   + 
Sbjct: 115 ETPLDIAKRLKHEHCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 17/157 (10%), Positives = 46/157 (29%), Gaps = 16/157 (10%)

Query: 120 EKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGP------DGLTTLHAAVIC---NAE 170
           +    LH   ++     +  + +   +      + P         T LH AV      + 
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 171 DVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT 230
            ++  L++    L ++  +      +         +  ++      +I      ++ G T
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI-----ANESGET 116

Query: 231 ALHLAASQGYERVVRRIIRHCPESYSIVD--NRGWNA 265
            L +A    +E     + +     ++        W  
Sbjct: 117 PLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRL 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 17/150 (11%)

Query: 48  ERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGV 107
             +   + +G+       L   ++  +T LH+A +      + ++           ++  
Sbjct: 20  FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-------QNSG 72

Query: 108 DWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVIC 167
           +  +             L +  +         +  +L    S +     G T L  A   
Sbjct: 73  NLDKQTGKGSTALHYCCLTDNAE--------CLKLLLRGKASIEIANESGETPLDIAKRL 124

Query: 168 NAEDVIKLLLEK--KKILTRERDRHGWTSL 195
             E   +LL +    +  +     + W  L
Sbjct: 125 KHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 13/210 (6%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE 127
             N  G T LH A    +  +V+ L++     ++    G   +         +    L  
Sbjct: 68  YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVIC--------NAEDVIKLLLEK 179
                   + E    +      A               I               +  L  
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187

Query: 180 KKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG 239
             I      + G T+LH AA  G++ +  +++++  D    +  +D  G T LH AA  G
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWG 243

Query: 240 YERVVRRIIRHCPESYSIVDNRGWNARHFA 269
            E   R ++ +  +    V+  G  A   A
Sbjct: 244 KEEACRILVENLCD-MEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.9 bits (115), Expect = 3e-07
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 112 WMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAED 171
              +   +   TALH A     KG  E++  +++     + +  DG T LHAA     E+
Sbjct: 190 INDVRHAKSGGTALHVAAA---KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

Query: 172 VIKLLLEKKKILTRERDRHGWTSLHHAA 199
             ++L+E    +    ++ G T+   A 
Sbjct: 247 ACRILVENLCDME-AVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 61/267 (22%), Positives = 94/267 (35%), Gaps = 49/267 (18%)

Query: 68  QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE 127
           +V          A        V  L          LE G D     +   N +  TALH+
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRL----------LERGAD-----INYANVDGLTALHQ 79

Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER 187
           A       +V+MV  ++EN  + +    +G   LHAA  C   D+ + L+ +        
Sbjct: 80  A---CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAV 135

Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKE----------------------- 224
           +  G T L  A       +    +  +   I A  KE                       
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195

Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
              G TALH+AA++GY  V++ +I+   +  +I D  GW   H A    +    + L+EN
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 285 PYVISLIHGRDKNGNTPLHVLAAACRD 311
              +      +K G T   V   A  D
Sbjct: 255 LCDMEA---VNKVGQTAFDV---ADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 15/76 (19%)

Query: 59  LEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVEN 118
           L      +   +  G TPLH AA         +L+          E+  D     +   N
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV----------ENLCD-----MEAVN 262

Query: 119 EEKNTALHEAVQSAAK 134
           +   TA   A +    
Sbjct: 263 KVGQTAFDVADEDILG 278

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
            D  G   +H A   GH+ + S +    D     L++ D RG+T L LA  +G + +V  
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAAESD-----LHRRDARGLTPLELALQRGAQDLVDI 151

Query: 247 IIRH 250
           +  H
Sbjct: 152 LQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 10/146 (6%)

Query: 159 TTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKI 218
             L  A        ++ LL ++ +     +R G T+L    +   +    ++ +     +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 219 VALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVL 278
                       A              +++       ++ D  G    H A+      V+
Sbjct: 64  QDTSGTSPVHDAART------GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 279 KSLLENPYVISLIHGRDKNGNTPLHV 304
             L         +H RD  G TPL +
Sbjct: 118 SFLAAESD----LHRRDARGLTPLEL 139

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 17/155 (10%)

Query: 72  KGDTPLHVAAKCRHPAVVEVLIK---------------FAKKQSRELESGVDWIRWMLLV 116
           +    L  AA       V  L+                  +       +    +      
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLL 176
            N +  +       +A  G ++ +  ++E+    +     G   +H AV      V+  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 177 LEKKKILTRERDRHGWTSLHHAAYLGHSNITSMML 211
             +  +    RD  G T L  A   G  ++  ++ 
Sbjct: 121 AAESDL--HRRDARGLTPLELALQRGAQDLVDILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (92), Expect = 8e-05
 Identities = 25/171 (14%), Positives = 45/171 (26%), Gaps = 24/171 (14%)

Query: 75  TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAK 134
             L  AA+      V +L          + +G  +    L                    
Sbjct: 4   KKLLEAARAGQDDEVRIL----------MANGAPFTTDWLGTSPLHLAAQYGH------- 46

Query: 135 GSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTS 194
                  E+L     +         T            I  +L K       +D    T+
Sbjct: 47  ---FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103

Query: 195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
           LH A    H  +  +++K   D    ++ +     TA  ++   G E +  
Sbjct: 104 LHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 10/149 (6%)

Query: 156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED 215
           D    L  A     +D +++L+      T   D  G + LH AA  GH + T ++L++  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 216 DKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRG 275
                      +        A+      +  ++       +  D     A H+A      
Sbjct: 59  S-----RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 276 GVLKSLLENPYVISLIHGRDKNGNTPLHV 304
            V++         + +H + K   T   +
Sbjct: 114 EVVE---LLIKYGADVHTQSKFCKTAFDI 139

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 5e-04
 Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 31/156 (19%)

Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKI 182
             L  A   AA+G +E +  +L+N  + + +   G T L    + N E   +LLL     
Sbjct: 3   NELASA---AARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP 59

Query: 183 LTRERD----------------------------RHGWTSLHHAAYLGHSNITSMMLKSE 214
             ++R                                                 ++    
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 215 DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
                 +   + +G TA  LA   G   VV  +  +
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 6e-04
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 75  TPLHVAAKCRHPAVVEVLIK--------------FAKKQSRELESGVDWIRWMLLVENEE 120
             L  AA       +  L++                +            +       + +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 121 KNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKK 180
             T       +A  G ++ +  +LE     +    +G   LH A       V++ L++  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 181 KILTRERDRHGWTSLHHAAYLGHSNITSMMLK 212
                 R+  G T+   A   G + + S+M  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 61  MCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIK 94
              S +   N KGDT   +A       VV ++  
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 19/121 (15%)

Query: 73  GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN---------- 122
            D     A K      V+  +   +  +R LE G   + +       E            
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 123 -----TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLL 177
                  +   + +  +G V  V  +L        +GPDGLT L A         IK LL
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALL 117

Query: 178 E 178
           +
Sbjct: 118 Q 118

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 8/127 (6%)

Query: 119 EEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLE 178
           E     L  A   AA+G VE V  +LE   + +     G   +   ++ +A         
Sbjct: 1   EPSADWLATA---AARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAEL---- 53

Query: 179 KKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ 238
              +   E +     +L    +          L         L   D  G   + LA   
Sbjct: 54  -LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 112

Query: 239 GYERVVR 245
           G+  V R
Sbjct: 113 GHRDVAR 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.98
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-51  Score=357.92  Aligned_cols=330  Identities=22%  Similarity=0.270  Sum_probs=270.7

Q ss_pred             hhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHH
Q 037701            3 PDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAA   81 (358)
Q Consensus         3 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~   81 (358)
                      ||||.||..|+.++|++|++.| +++..+..|.||||+|+..|+   .+++++|++.    +++++.++..|.||||+|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~---~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~   74 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGH---TEVAKYLLQN----KAKVNAKAKDDQTPLHCAA   74 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTC---HHHHHHHHHH----TCCSSCCCTTSCCHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHC----cCCCCCCCCCCCCHHHHHH
Confidence            7999999999999999999998 577799999999999999999   9999999883    7789999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhhhHhhhcchhH------------HH------HHHHhhcccCCcHHHHHHHHHhCCcHHHHHHH
Q 037701           82 KCRHPAVVEVLIKFAKKQSRELESGVDW------------IR------WMLLVENEEKNTALHEAVQSAAKGSVEMVAEI  143 (358)
Q Consensus        82 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~------------~~------~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~L  143 (358)
                      ..|+.+++++|+..+.+...........            ..      ......+..+.++++.|+..   ++.++++.|
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~v~~l  151 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY---GKVRVAELL  151 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT---TCHHHHHHH
T ss_pred             HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHc---CCHHHHHHH
Confidence            9999999999998876543211111000            00      00123455677777777554   777777777


Q ss_pred             HhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCccc--------------------------------ccccCCC
Q 037701          144 LENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT--------------------------------RERDRHG  191 (358)
Q Consensus       144 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~--------------------------------~~~~~~~  191 (358)
                      ++++++++..+.+|.+||++|+..++.+++++|+.+|++..                                ...+..+
T Consensus       152 l~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  231 (408)
T d1n11a_         152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  231 (408)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             HHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCC
Confidence            77777777777777777777777777777777777665521                                1234556


Q ss_pred             CCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHH
Q 037701          192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMV  271 (358)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  271 (358)
                      .||++.|+..+..++++++...+.    ..+..+..|.||++.|+..++.+++++|++.+.+ ++..+..+.||||.++.
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~  306 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQA----NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASH  306 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHH
T ss_pred             CCHHHHHHHhCcHhHhhhhhcccc----ccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcc
Confidence            677777777777777777777663    3566788899999999999999999999999876 47788899999999999


Q ss_pred             cCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCcccccce
Q 037701          272 SLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIPSL  350 (358)
Q Consensus       272 ~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L  350 (358)
                      .++.++++.+++.|   ++++.+|..|+||||+|++.|+.++ ++|+++|||++.+|++|+|||++|+.. |+.+++++|
T Consensus       307 ~~~~~~~~~ll~~g---~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~-~~~~iv~~L  382 (408)
T d1n11a_         307 YGNIKLVKFLLQHQ---ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GYISVTDVL  382 (408)
T ss_dssp             SSCSHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT-TCHHHHHHH
T ss_pred             cCcceeeeeecccc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHH
Confidence            99999999999998   8999999999999999999999998 999999999999999999999999995 999999877


Q ss_pred             e
Q 037701          351 L  351 (358)
Q Consensus       351 ~  351 (358)
                      .
T Consensus       383 ~  383 (408)
T d1n11a_         383 K  383 (408)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-42  Score=300.45  Aligned_cols=300  Identities=22%  Similarity=0.258  Sum_probs=242.9

Q ss_pred             ChhhhcccccCCchhhhhhhhhh-ccceeccCCCceehhhhccccccccchHHHHHHHH---------------------
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE-LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGIL---------------------   59 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~---------------------   59 (358)
                      +||||+|+..|+.+++++|++.+ +++..+..|.||||+|+..|+   .+++++|+...                     
T Consensus        34 ~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  110 (408)
T d1n11a_          34 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTPLHIAAREG  110 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHhhhccccccccccchhhhhhhhc
Confidence            57999999999999999999998 677799999999999999999   88888776531                     


Q ss_pred             --------hhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHH
Q 037701           60 --------EMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQS  131 (358)
Q Consensus        60 --------~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~  131 (358)
                              ...+......+..+.++++.|+..++.+++++|+++|+++               +..+..|.+||++|+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~---------------~~~~~~~~~~L~~A~~~  175 (408)
T d1n11a_         111 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---------------NAAGKNGLTPLHVAVHH  175 (408)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---------------TCCCSSCCCHHHHHHHT
T ss_pred             ccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC---------------CcCCCcCchHHHHHHHc
Confidence                    1112233445677888899999888899999998888763               34566677777777554


Q ss_pred             HhCCcHHHHHHHHhcCCCCCCCC---------------------------------CCCccHHHHHHhcCcHHHHHHHHH
Q 037701          132 AAKGSVEMVAEILENCPSADHRG---------------------------------PDGLTTLHAAVICNAEDVIKLLLE  178 (358)
Q Consensus       132 ~~~~~~~~~~~Ll~~~~~~~~~~---------------------------------~~~~t~l~~a~~~~~~~~v~~Ll~  178 (358)
                         ++.+++++|+++|++++..+                                 ..+.||++.|+..+..++++++..
T Consensus       176 ---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~  252 (408)
T d1n11a_         176 ---NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS  252 (408)
T ss_dssp             ---TCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ---CCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhc
Confidence               67777777777766665443                                 445566777777777777777777


Q ss_pred             hCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccc
Q 037701          179 KKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIV  258 (358)
Q Consensus       179 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~  258 (358)
                      .+.. .+..+..|.||++.|+..++.+++++|++.|.+    ++..+..+.||||.++..++.++++++++.+.+ ++.+
T Consensus       253 ~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~----~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~  326 (408)
T d1n11a_         253 KQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAK  326 (408)
T ss_dssp             TTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCC
T ss_pred             cccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCc----cccccccccccchhhcccCcceeeeeecccccc-cccc
Confidence            6655 556788999999999999999999999999855    677788899999999999999999999999776 5889


Q ss_pred             cCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc----eeecCCcchHHHHhhCCC
Q 037701          259 DNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS----YFIVPDSDMYEAVNKQNT  331 (358)
Q Consensus       259 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~----~~Ll~~g~~~~~~~~~g~  331 (358)
                      |..|.||||+|++.|+.+++++|+++|   ++++.+|..|+||||+|++.|+..+    +.+.+.+.+....+....
T Consensus       327 d~~G~T~Lh~A~~~g~~~iv~~Ll~~G---Ad~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~  400 (408)
T d1n11a_         327 TKLGYSPLHQAAQQGHTDIVTLLLKNG---ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM  400 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTT---CCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----CCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccccccccccccC
Confidence            999999999999999999999999999   8999999999999999999998876    456677777777666544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-40  Score=272.30  Aligned_cols=237  Identities=24%  Similarity=0.219  Sum_probs=188.2

Q ss_pred             cccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcC
Q 037701           68 QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC  147 (358)
Q Consensus        68 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~  147 (358)
                      ..+.+|.||||+||..|+.+++++|+++|++...            ++.++..|.||||+|+..   ++.+++++|++.|
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~------------i~~~~~~g~TpL~~A~~~---g~~~iv~~Ll~~g   68 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY------------LDLQNDLGQTALHLAAIL---GEASTVEKLYAAG   68 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG------------GGCCCTTSCCHHHHHHHH---TCHHHHHHHHHTT
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCccc------------ccCcCCCCCCccchHHhh---ccccccccccccc
Confidence            3578999999999999999999999999987543            556888999999999887   9999999999999


Q ss_pred             CCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccc---------cCCCCCHHHHHHHcCCHHHHHHHhcCCCccc
Q 037701          148 PSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRER---------DRHGWTSLHHAAYLGHSNITSMMLKSEDDKI  218 (358)
Q Consensus       148 ~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~---------~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  218 (358)
                      ++++..+..|.||||+|+..++.+++++|++.........         ...+.+....+....................
T Consensus        69 a~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (255)
T d1oy3d_          69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR  148 (255)
T ss_dssp             CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGG
T ss_pred             ccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcC
Confidence            9999999999999999999999999999987654321110         0111111111111111111111112222233


Q ss_pred             ccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCC
Q 037701          219 VALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNG  298 (358)
Q Consensus       219 ~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g  298 (358)
                      ..++.++..|.||||+|+..++.+++++|++.+.+.....+..|.||||+|+..++.+++++|+++|   ++++.+|..|
T Consensus       149 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g---adin~~d~~g  225 (255)
T d1oy3d_         149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG---ADPTARMYGG  225 (255)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTS
T ss_pred             cccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCC---CCCCCCCCCC
Confidence            5677889999999999999999999999999998876677889999999999999999999999998   8999999999


Q ss_pred             ChHHHHHHHhCCCCc-eeecCCcch
Q 037701          299 NTPLHVLAAACRDSS-YFIVPDSDM  322 (358)
Q Consensus       299 ~tpL~~a~~~~~~~~-~~Ll~~g~~  322 (358)
                      +||||+|+..++.++ ++|+++||+
T Consensus       226 ~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         226 RTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999 999999996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-38  Score=250.54  Aligned_cols=220  Identities=22%  Similarity=0.261  Sum_probs=184.6

Q ss_pred             CCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHH
Q 037701           33 KNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW  112 (358)
Q Consensus        33 ~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (358)
                      .+++|+.++..|+      ++.+.+++...+..++.+|..|+||||+|+..|+.++++++++.+....            
T Consensus         3 ~~~~~~~~a~~G~------~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~------------   64 (223)
T d1uoha_           3 SNLMVCNLAYSGK------LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN------------   64 (223)
T ss_dssp             SSSHHHHHHHTTC------HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC------------
T ss_pred             CHHHHHHHHHhCC------HHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc------------
Confidence            3567888889888      5555555666888888999999999999999999999999988876632            


Q ss_pred             HHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCC
Q 037701          113 MLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGW  192 (358)
Q Consensus       113 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  192 (358)
                         ..+..+.++++.++..   ++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|.+ .+.++..|.
T Consensus        65 ---~~~~~~~~~~~~~~~~---~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~  137 (223)
T d1uoha_          65 ---DKDDAGWSPLHIAASA---GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEA  137 (223)
T ss_dssp             ---CCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred             ---cccccccccccccccc---cccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCC
Confidence               4566778888888766   888999999999999998899999999999999999999999988877 567788899


Q ss_pred             CHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHc
Q 037701          193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVS  272 (358)
Q Consensus       193 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  272 (358)
                      ||||+|+..++.+++++|.+.+.+    ++..+..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+| ..
T Consensus       138 t~L~~a~~~~~~~~~~~L~~~~~~----i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~  211 (223)
T d1uoha_         138 TAMHRAAAKGNLKMIHILLYYKAS----TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KG  211 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CT
T ss_pred             ccchhhhhcCCcchhhhhccccce----eeeccCCCCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HC
Confidence            999999999999999998888744    777888899999999999999999999988776 478888999999887 46


Q ss_pred             CChhHHHHHhc
Q 037701          273 LRGGVLKSLLE  283 (358)
Q Consensus       273 ~~~~~~~~Ll~  283 (358)
                      |+.+++++|++
T Consensus       212 ~~~~i~~~Ll~  222 (223)
T d1uoha_         212 GLGLILKRMVE  222 (223)
T ss_dssp             THHHHHHHHHC
T ss_pred             CCHHHHhcccC
Confidence            88888888886

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=248.43  Aligned_cols=217  Identities=23%  Similarity=0.304  Sum_probs=197.2

Q ss_pred             ChhhhcccccCCchhhhhhhhhh--ccceeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE--LVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHV   79 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~--~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~   79 (358)
                      |+.|+.+|+.|+++.++.++..+  .++.+|..|+||||+|+..|+   .++++++...    +......+..+.++++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~---~e~~~~l~~~----~~~~~~~~~~~~~~~~~   76 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH---TEIVEFLLQL----GVPVNDKDDAGWSPLHI   76 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC---HHHHHHHHHH----TCCSCCCCTTCCCHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhh---hccccccccc----ccccccccccccccccc
Confidence            56788999999999999999876  466799999999999999999   9999988773    45566677788999999


Q ss_pred             HHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCcc
Q 037701           80 AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLT  159 (358)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  159 (358)
                      |+..++.+++++|+++|++               ++..+..|.||||+|+..   ++.+++++|+++|++++..+..|.|
T Consensus        77 ~~~~~~~~i~~~Ll~~~~d---------------~~~~d~~g~tpL~~A~~~---~~~e~~~~Ll~~g~d~~~~~~~~~t  138 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGAQ---------------VNAVNQNGCTPLHYAASK---NRHEIAVMLLEGGANPDAKDHYEAT  138 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccccccchhHHHhccCce---------------eEeeCCCCCchhhHHHHc---CCHHHHHHHHHCCCCCCCcCCCCCc
Confidence            9999999999999999887               446899999999999877   9999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcC
Q 037701          160 TLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQG  239 (358)
Q Consensus       160 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~  239 (358)
                      |||+|+..+..+++++|...+.+ .+.++..|.||||.|+..|+.+++++|++.|++    ++.+|..|+||||+| ..|
T Consensus       139 ~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad----~~~~d~~g~tpl~~A-~~~  212 (223)
T d1uoha_         139 AMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQVA-KGG  212 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHC-CTT
T ss_pred             cchhhhhcCCcchhhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHH-HCC
Confidence            99999999999999999998887 678899999999999999999999999999955    788999999999988 579


Q ss_pred             cHHHHHHHHh
Q 037701          240 YERVVRRIIR  249 (358)
Q Consensus       240 ~~~~v~~Ll~  249 (358)
                      +.+++++|++
T Consensus       213 ~~~i~~~Ll~  222 (223)
T d1uoha_         213 LGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHHC
T ss_pred             CHHHHhcccC
Confidence            9999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-36  Score=249.93  Aligned_cols=263  Identities=19%  Similarity=0.237  Sum_probs=139.9

Q ss_pred             CCceehhhhccccccccchHHHHHHHHhhCccchhccc-CCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHH
Q 037701           33 KNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVN-DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIR  111 (358)
Q Consensus        33 ~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  111 (358)
                      +.|+||.|+++|+   .+++++|++    .|.+++.++ ..|.||||+|+..|+.+++++|++.+...            
T Consensus         5 ~~~~L~~Ai~~~~---~e~vk~Ll~----~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~------------   65 (285)
T d1wdya_           5 DNHLLIKAVQNED---VDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP------------   65 (285)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------
T ss_pred             CcHHHHHHHHcCC---HHHHHHHHH----CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc------------
Confidence            3455555555555   555555444    244444332 34555555555555555555555555442            


Q ss_pred             HHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCccc-------
Q 037701          112 WMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT-------  184 (358)
Q Consensus       112 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~-------  184 (358)
                         ...+..+.+|.+.+...   +..+.....++...+....+..+.++++.|+..+....++.++.......       
T Consensus        66 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (285)
T d1wdya_          66 ---VLRKKNGATPFLLAAIA---GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  139 (285)
T ss_dssp             ---TCCCTTCCCHHHHHHHH---TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred             ---cccccccchhhHHHhhc---CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchh
Confidence               23444455555555443   55555555555554444445555555555555555555555554332211       


Q ss_pred             --ccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc----CcHHHHHHHHhhCCCCcccc
Q 037701          185 --RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ----GYERVVRRIIRHCPESYSIV  258 (358)
Q Consensus       185 --~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~----~~~~~v~~Ll~~~~~~~~~~  258 (358)
                        ......|.||||+|++.|+.+++++|++...   .+++..+..|.+++..+...    +..+++++|++.+++ ++.+
T Consensus       140 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~  215 (285)
T d1wdya_         140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMG---ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVR  215 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSC---CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCC
T ss_pred             hhhhhcccCchHHHHHHHcCCHHHHHHHHhccC---CCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCcc
Confidence              1223445566666666666666666654321   23455555555555544332    223456666665544 3555


Q ss_pred             cCCCCcHHHHHHHcCChhHHHHHhcC-ccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHh
Q 037701          259 DNRGWNARHFAMVSLRGGVLKSLLEN-PYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVN  327 (358)
Q Consensus       259 ~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~  327 (358)
                      +..|.||||+|+..++.+++++|++. |   ++++.+|..|.||||+|++.++.++ ++|+++|||+|.+|
T Consensus       216 ~~~g~t~L~~a~~~~~~~~v~~lL~~~g---~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         216 GERGKTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHSSS---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCCCCccchhhhcCcHHHHHHHHHcCC---CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            55666666666666666666666653 3   5556666666666666666665555 66666666655544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-37  Score=254.33  Aligned_cols=263  Identities=19%  Similarity=0.180  Sum_probs=223.2

Q ss_pred             ChhhhcccccCCchhhhhhhhhh-ccceeccC-CCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHH
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDE-LVSIATHE-KNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHV   79 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~-~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~   79 (358)
                      ++.|+.|++.|+.++|++|++.| +++.++.. |.||||+|+..|+   .+++++|++    .+......+..+.+|.++
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~---~eiv~~L~~----~~~~~~~~~~~~~~~~~~   78 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR---EDIVELLLR----HGADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCC---HHHhhhhcc----ccccccccccccchhhHH
Confidence            47899999999999999999998 55557774 8999999999999   888888877    466677788889999999


Q ss_pred             HHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCC------
Q 037701           80 AAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR------  153 (358)
Q Consensus        80 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~------  153 (358)
                      |+..+..+...+.++.....               ...+..+.++++.|+..   +....+..++....+++..      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  140 (285)
T d1wdya_          79 AAIAGSVKLLKLFLSKGADV---------------NECDFYGFTAFMEAAVY---GKVKALKFLYKRGANVNLRRKTKED  140 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT---------------TCBCTTCCBHHHHHHHT---TCHHHHHHHHHTTCCTTCCCCCCHH
T ss_pred             HhhcCCccccchhhhhcccc---------------cccccCCCchhHHHHHh---cchhhhhhhhhhcccccccccchhh
Confidence            99999999999998876542               24677899999999765   8999999999887776543      


Q ss_pred             ----CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC----CHHHHHHHhcCCCcccccccccC
Q 037701          154 ----GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG----HSNITSMMLKSEDDKIVALYKED  225 (358)
Q Consensus       154 ----~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~  225 (358)
                          ...|.||||+|++.++.+++++|+++.+...+..+..+.++...+...+    ..+++++|+++|++    ++.++
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~----~n~~~  216 (285)
T d1wdya_         141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----VNVRG  216 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC----SSCCC
T ss_pred             hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC----CCccC
Confidence                3358899999999999999999998755557788888888887765443    34689999999865    77788


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCC
Q 037701          226 DRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDK  296 (358)
Q Consensus       226 ~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  296 (358)
                      ..|.||||+|++.|+.+++++|++.++.+++.+|.+|.||||+|++.++.+++++|+++|   +++|++|.
T Consensus       217 ~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G---Ad~n~~d~  284 (285)
T d1wdya_         217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTDCGDL  284 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---SCSCCSSC
T ss_pred             CCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCcccC
Confidence            999999999999999999999998766667899999999999999999999999999999   89988874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-37  Score=251.20  Aligned_cols=232  Identities=22%  Similarity=0.209  Sum_probs=178.0

Q ss_pred             eeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcch
Q 037701           28 IATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGV  107 (358)
Q Consensus        28 ~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  107 (358)
                      ..+.+|.||||+|+.+|+   .+++++|++. ......++.+|..|+||||+|+..|+.+++++|+++|++         
T Consensus         4 ~i~~~G~t~Lh~A~~~~~---~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---------   70 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQH---EPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---------   70 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTC---HHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred             cCCcCCCCHHHHHHHcCC---HHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhccccccccccccccc---------
Confidence            468899999999999999   9999998873 333455788899999999999999999999999999988         


Q ss_pred             hHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCC----------CccH---HHHHHhcCcHHHHH
Q 037701          108 DWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPD----------GLTT---LHAAVICNAEDVIK  174 (358)
Q Consensus       108 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~----------~~t~---l~~a~~~~~~~~v~  174 (358)
                            ++..+..|.||||+|+..   ++.++++.|++.+.........          ..+.   +.............
T Consensus        71 ------i~~~d~~g~tpL~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (255)
T d1oy3d_          71 ------VLVAERGGHTALHLACRV---RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE  141 (255)
T ss_dssp             ------SSCCCTTSCCHHHHHTTT---TCHHHHHHHSSSCCSSCCCC---------------------------------
T ss_pred             ------ccccccccchhhhhhhcc---CchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHH
Confidence                  446889999999999654   9999999999876543221110          0011   11111111111111


Q ss_pred             HHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCC
Q 037701          175 LLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES  254 (358)
Q Consensus       175 ~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~  254 (358)
                      .+........+.++..|.||||+|+..++.+++++|++.+.+.   ....+..|.||||+|++.++.+++++|++++++ 
T Consensus       142 ~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-  217 (255)
T d1oy3d_         142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL---NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-  217 (255)
T ss_dssp             --CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHhhhcCcccccccccCcccccccccccccccccchhcccccc---cccccccccccccccccccHHHHHHHHHHCCCC-
Confidence            1111222235668899999999999999999999999988642   233567899999999999999999999999866 


Q ss_pred             cccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          255 YSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       255 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      ++.+|..|.||||+|+..++.+++++|+++|
T Consensus       218 in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         218 PTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (255)
T ss_dssp             TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5889999999999999999999999999999

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.6e-37  Score=246.07  Aligned_cols=222  Identities=19%  Similarity=0.218  Sum_probs=195.3

Q ss_pred             CchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC-
Q 037701           74 DTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH-  152 (358)
Q Consensus        74 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~-  152 (358)
                      ++|||+||..|+.++|+.|++.+...              ++.+|.+|.||||+|+..   ++.+++++|+++|++++. 
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~--------------~~~~d~~G~TpL~~A~~~---g~~~iv~~Ll~~ga~~~~~   63 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSL--------------LLQKDQDGRIPLHWSVSF---QAHEITSFLLSKMENVNLD   63 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGG--------------TTCCCTTSCCHHHHHHHT---TCHHHHHHHHTTCTTCCGG
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCc--------------ccccCCCCCCHHHHHHHc---CCccccchhhhhhcccccc
Confidence            48999999999999999999875432              457899999999999765   999999999999998864 


Q ss_pred             --CCCCCccHHHHHHhcCcHHHHHHHHHhCCcc-cccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCC
Q 037701          153 --RGPDGLTTLHAAVICNAEDVIKLLLEKKKIL-TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGM  229 (358)
Q Consensus       153 --~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  229 (358)
                        .+..|.+|+++++..+..++++.++..+... ....+..+.|+++.++..++.++++.|+..+..    .+..+..|+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~----~~~~~~~g~  139 (229)
T d1ixva_          64 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS----VRIKDKFNQ  139 (229)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc----ccccCCCCC
Confidence              5667899999999999999999988877642 345677889999999999999999999998854    666788999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhc-CccccccccCCCCCCChHHHHHHHh
Q 037701          230 TALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE-NPYVISLIHGRDKNGNTPLHVLAAA  308 (358)
Q Consensus       230 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~g~tpL~~a~~~  308 (358)
                      ||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..++.+++++|++ .|   ++++.+|..|+||||+|++.
T Consensus       140 t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g---ad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         140 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG---AEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---CCSCCCCTTSCCTGGGCSCH
T ss_pred             CccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcC---CCCCCcCCCCCCHHHHHhhH
Confidence            999999999999999999999888889999999999999999999999999997 46   89999999999999999853


Q ss_pred             CCCCc-eeecCCcch
Q 037701          309 CRDSS-YFIVPDSDM  322 (358)
Q Consensus       309 ~~~~~-~~Ll~~g~~  322 (358)
                         .+ ++|+++|+|
T Consensus       217 ---~~~~~Ll~~g~d  228 (229)
T d1ixva_         217 ---QVKKFFLNNVVD  228 (229)
T ss_dssp             ---HHHHHHHHHCCC
T ss_pred             ---HHHHHHHHcCCC
Confidence               35 899998886

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.8e-36  Score=251.69  Aligned_cols=262  Identities=19%  Similarity=0.174  Sum_probs=131.0

Q ss_pred             ChhhhcccccCCchhhhhhhhhhccceec-cCCCceehhhhccccccccchHHHHHHHH----hhCccchhcccCCCCch
Q 037701            2 NPDLYRDAAKGEIEPFNEIAKDELVSIAT-HEKNTVLHVNIASQQEGERVSTEFVEGIL----EMCPSLLLQVNDKGDTP   76 (358)
Q Consensus         2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~g~t~   76 (358)
                      +||||.|++.+..+.+..+|.+..++..+ .+|+||||+|+..|+   .+++++|+..-    -..|++++.+|..|+||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~---~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~Tp   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSS---AEKSEDLIVHEAKECIAAGADVNAMDCDENTP   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTC---CSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCC---HHHHHHHHhcchhHHHHcCCCccccCCCCCee
Confidence            35666555443334333333333355533 346677777777766   66666654421    12345566666666666


Q ss_pred             hHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcC---CCCCCC
Q 037701           77 LHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENC---PSADHR  153 (358)
Q Consensus        77 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~---~~~~~~  153 (358)
                      ||+|+..|+.++|++|+++|++               ++..+..|.||+++|+..   ++.++++.+...+   ..++..
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad---------------~n~~~~~g~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGAD---------------PTIYNKSERSALHQAAAN---RDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC---------------SCCCCTTCCCHHHHHHHT---TCHHHHHHHTTSHHHHHTTSCC
T ss_pred             eccccccccccccccccccccc---------------cccccccccccccchhhh---cchhhhhhhhhccccccccccc
Confidence            6666666666666666666555               224555566666666443   5555555554432   233444


Q ss_pred             CCCCccHHHHHHhcCcH---HHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCC
Q 037701          154 GPDGLTTLHAAVICNAE---DVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMT  230 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~---~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  230 (358)
                      +..+.++.+.+...+..   ..+..+........                              .......+..+..|.|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD------------------------------YDGAARKDSEKYKGRT  189 (277)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS------------------------------CCSGGGTSSSSCCCCC
T ss_pred             ccccchhHHHHHhccccccccccccccccccccc------------------------------ccccccccccccCCCC
Confidence            44555555555544332   22222222211100                              0001112233444555


Q ss_pred             HHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCC
Q 037701          231 ALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACR  310 (358)
Q Consensus       231 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~  310 (358)
                      |||+++..++.+++++++...+.+.+.+|..|.||||+|+..|+.+++++|+++|   ++++.+|..|+||||+|++.++
T Consensus       190 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g---adin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCSSSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc---CCCCCcCCCCCCHHHHHHHcCC
Confidence            5555555555555555444444444455555555555555555555555555555   5555555555555555555555


Q ss_pred             CCc-eeec
Q 037701          311 DSS-YFIV  317 (358)
Q Consensus       311 ~~~-~~Ll  317 (358)
                      .++ ++|+
T Consensus       267 ~~iv~lL~  274 (277)
T d2fo1e1         267 HNIVDIFD  274 (277)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            544 4433

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-36  Score=241.09  Aligned_cols=224  Identities=25%  Similarity=0.313  Sum_probs=192.4

Q ss_pred             CceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHH
Q 037701           34 NTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWM  113 (358)
Q Consensus        34 ~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  113 (358)
                      +||||+||..|+   .+.++.|   ++..+..++.+|.+|.||||+|+..|+.+++++|+++|++++.            
T Consensus         1 n~pLh~A~~~g~---~~~v~~L---l~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~------------   62 (229)
T d1ixva_           1 NYPLHQACMENE---FFKVQEL---LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL------------   62 (229)
T ss_dssp             CCHHHHHHHHTC---HHHHHHH---HHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG------------
T ss_pred             CHhHHHHHHcCC---HHHHHHH---HHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccc------------
Confidence            489999999999   6555555   4457888999999999999999999999999999999987543            


Q ss_pred             HHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCC--CCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCC
Q 037701          114 LLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD--HRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHG  191 (358)
Q Consensus       114 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~--~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~  191 (358)
                      ....+..|.+|++++...   +..++++.++..+...+  ..+..+.+|++.++..++.+++++|+..+.. ...++..|
T Consensus        63 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g  138 (229)
T d1ixva_          63 DDYPDDSGWTPFHIACSV---GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFN  138 (229)
T ss_dssp             GGCCCTTSCCHHHHHHHH---TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTS
T ss_pred             cccccccccccccccccc---cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCC
Confidence            234677899999999776   89999999998886544  4566788999999999999999999998877 56788999


Q ss_pred             CCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHH
Q 037701          192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMV  271 (358)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  271 (358)
                      .||||+|+..|+.+++++|++.+.   .+++.++..|.||||+|+..|+.+++++|++..+.+++.+|..|+||||+|+.
T Consensus       139 ~t~l~~a~~~~~~~~~~~Ll~~~~---~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         139 QIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTC---CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             CCccchhhhccccccccccccccc---ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            999999999999999999999874   34777889999999999999999999999976444468999999999999984


Q ss_pred             cCChhHHHHHhcCc
Q 037701          272 SLRGGVLKSLLENP  285 (358)
Q Consensus       272 ~~~~~~~~~Ll~~~  285 (358)
                         .+++++|+++|
T Consensus       216 ---~~~~~~Ll~~g  226 (229)
T d1ixva_         216 ---EQVKKFFLNNV  226 (229)
T ss_dssp             ---HHHHHHHHHHC
T ss_pred             ---HHHHHHHHHcC
Confidence               57999999988

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.5e-37  Score=253.98  Aligned_cols=261  Identities=18%  Similarity=0.193  Sum_probs=194.8

Q ss_pred             CceehhhhccccccccchHHHHHHHHhhCccchhccc-CCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHH
Q 037701           34 NTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVN-DKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW  112 (358)
Q Consensus        34 ~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (358)
                      +||||+++..+..  .++.+.|.+    .+  ++..+ ..|+||||+|+..|+.++|++|+.+..               
T Consensus         1 ~~p~~~~~~~~~~--~~~~~~l~~----~~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~---------------   57 (277)
T d2fo1e1           1 ESPIKLHTEAAGS--YAITEPITR----ES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA---------------   57 (277)
T ss_dssp             CCCCHHHHHHHSS--SCCCSCCST----TT--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHH---------------
T ss_pred             CChHHHHHHhCCC--HHHHHHHHh----cC--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcch---------------
Confidence            4899977776551  444444433    22  33344 459999999999999999999987532               


Q ss_pred             HHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCC
Q 037701          113 MLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGW  192 (358)
Q Consensus       113 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  192 (358)
                                                  +.+++.|+++|.+|.+|.||||+|+..|+.+++++|+++|++ .+.++..|.
T Consensus        58 ----------------------------~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~  108 (277)
T d2fo1e1          58 ----------------------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSER  108 (277)
T ss_dssp             ----------------------------HHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCC
T ss_pred             ----------------------------hHHHHcCCCccccCCCCCeeeccccccccccccccccccccc-ccccccccc
Confidence                                        445567777777777788888888888888888888877776 556677778


Q ss_pred             CHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHH---HHHHHHhhCCC-------CcccccCCC
Q 037701          193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER---VVRRIIRHCPE-------SYSIVDNRG  262 (358)
Q Consensus       193 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~---~v~~Ll~~~~~-------~~~~~~~~g  262 (358)
                      ||+++|+..++.++++++...... ...++..+..+.++.+.+...+..+   .+..+.+....       ..+..+..|
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKL-KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHH-HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccc-cccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            888888887777777777654321 1234455667777887777665433   34444443211       123456789


Q ss_pred             CcHHHHHHHcCChhHHHHHhc-CccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhC
Q 037701          263 WNARHFAMVSLRGGVLKSLLE-NPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYG  340 (358)
Q Consensus       263 ~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~  340 (358)
                      .||||+++..++.+++++++. .+   .+++.+|..|+||||+|++.++..+ ++|++.|+|++.+|.+|+|||++|+..
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~---~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~  264 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKG---SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN  264 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSC---CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred             CCcccccccccccccccccccccc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHc
Confidence            999999999999999987654 44   6778899999999999999999988 999999999999999999999999995


Q ss_pred             CCCccccccee
Q 037701          341 YPELEVIPSLL  351 (358)
Q Consensus       341 ~~~~~~~~~L~  351 (358)
                       ++.+++++|+
T Consensus       265 -~~~~iv~lL~  274 (277)
T d2fo1e1         265 -NHHNIVDIFD  274 (277)
T ss_dssp             -TCHHHHHHHH
T ss_pred             -CCHHHHHHHH
Confidence             9999999886

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.2e-35  Score=248.55  Aligned_cols=219  Identities=25%  Similarity=0.313  Sum_probs=195.3

Q ss_pred             ccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHH
Q 037701          119 EEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHA  198 (358)
Q Consensus       119 ~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a  198 (358)
                      ..+.|+|+.|+..   |+.++++.|++.|+++|..+.+|.||||+|+..|+.+++++|++++.. ....+..+.+||+.+
T Consensus        38 ~~~~t~l~~A~~~---G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          38 FDDGAVFLAACSS---GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAA  113 (291)
T ss_dssp             ECHHHHHHHHHHH---TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CCCchHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-ccccccccccccccc
Confidence            4466999999877   999999999999999999999999999999999999999999999887 566788899999999


Q ss_pred             HHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCC------------------------
Q 037701          199 AYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES------------------------  254 (358)
Q Consensus       199 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~------------------------  254 (358)
                      +..++.++++.|++.+..    .+..+..+.+|+++|+..+..+.++.++...+..                        
T Consensus       114 ~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccchhhcccccCcc----cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccc
Confidence            999999999999998854    5667889999999999888888888877543221                        


Q ss_pred             --cccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCC
Q 037701          255 --YSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNT  331 (358)
Q Consensus       255 --~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~  331 (358)
                        ....+..|.||||+|+..++.++++.|++.|   ++++.++..|+||||+|++.|+.++ ++|+++|+|++.+|..|+
T Consensus       190 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g---~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~  266 (291)
T d1s70b_         190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ  266 (291)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccccccCCCCChhhHHHHcCChhhhcccccce---ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence              2346678999999999999999999999999   8999999999999999999999999 999999999999999999


Q ss_pred             chhhHhhhCCCCcccccceeee
Q 037701          332 SVEHIVRYGYPELEVIPSLLII  353 (358)
Q Consensus       332 t~l~~a~~~~~~~~~~~~L~~~  353 (358)
                      |||++|++     +++++|..+
T Consensus       267 TaL~~A~e-----~~~~~L~~~  283 (291)
T d1s70b_         267 TAFDVADE-----DILGYLEEL  283 (291)
T ss_dssp             CTTTSCCS-----GGGHHHHHH
T ss_pred             CHHHHHHH-----HHHHHHHHH
Confidence            99999974     577776554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.3e-34  Score=240.62  Aligned_cols=212  Identities=24%  Similarity=0.289  Sum_probs=166.9

Q ss_pred             CCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCC
Q 037701           73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADH  152 (358)
Q Consensus        73 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~  152 (358)
                      +.|||+.||..|+.++|++|+++|++               ++..|.+|.||||+|+..   ++.+++++|+++|.+...
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gad---------------vn~~d~~G~T~L~~A~~~---g~~eiv~~Ll~~~~~~~~  101 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGAD---------------INYANVDGLTALHQACID---DNVDMVKFLVENGANINQ  101 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCC---------------TTCBCTTCCBHHHHHHHT---TCHHHHHHHHHTTCCTTC
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCC---------------CCccCCCCCcHHHHHHhc---CCceeeeeeccccccccc
Confidence            45777788877888888888777776               445677777888887654   777788888877777777


Q ss_pred             CCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCc----------------
Q 037701          153 RGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD----------------  216 (358)
Q Consensus       153 ~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~----------------  216 (358)
                      .+..+.+|++.++..++.++++.|++.+.. ....+..+.+++++|+..+..+.++.++.....                
T Consensus       102 ~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  180 (291)
T d1s70b_         102 PDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD  180 (291)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhcccccCcc-cccccccCccccccccccccchhcccccccccccccccccccccccccc
Confidence            777777778877777777777777777665 455677777777777777777766666643211                


Q ss_pred             -------ccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccc
Q 037701          217 -------KIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVIS  289 (358)
Q Consensus       217 -------~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  289 (358)
                             ........+..|.||||.|+..|+.++++.|++.+.+ ++.++..|.||||+|+..|+.+++++|+++|   +
T Consensus       181 ~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~G---a  256 (291)
T d1s70b_         181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENL---C  256 (291)
T ss_dssp             HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---C
T ss_pred             chhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCC---C
Confidence                   0112334567899999999999999999999999876 5889999999999999999999999999999   8


Q ss_pred             cccCCCCCCChHHHHHHH
Q 037701          290 LIHGRDKNGNTPLHVLAA  307 (358)
Q Consensus       290 ~~~~~~~~g~tpL~~a~~  307 (358)
                      +++.+|..|+||||+|++
T Consensus       257 dv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         257 DMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CTTCCCTTSCCTTTSCCS
T ss_pred             CCCCcCCCCCCHHHHHHH
Confidence            999999999999999974

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=223.80  Aligned_cols=222  Identities=21%  Similarity=0.227  Sum_probs=198.3

Q ss_pred             ccCCcHHHHHHHHHhCCcHHHHHHHHh----cCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCH
Q 037701          119 EEKNTALHEAVQSAAKGSVEMVAEILE----NCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTS  194 (358)
Q Consensus       119 ~~~~t~l~~a~~~~~~~~~~~~~~Ll~----~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~  194 (358)
                      .+|.||||+|+..   ++.++++.|++    .|++++.++..|.||||+|+..|+.+++++|++.++. .+.....+.++
T Consensus         1 ~dG~TpLh~A~~~---g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQ---GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHT---TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCCccHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc-ccccccccccc
Confidence            3699999999765   99999888874    8899999999999999999999999999999999887 56778899999


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCC
Q 037701          195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLR  274 (358)
Q Consensus       195 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  274 (358)
                      ++.|...++.++++.+...........+.......++++.+.........+.|..............|.++++.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            99999999999998887765544445556677788999999999999999999988777666777889999999999999


Q ss_pred             hhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhhhCCCCccccc
Q 037701          275 GGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEVIP  348 (358)
Q Consensus       275 ~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  348 (358)
                      ..+++.+++.+   ..++.+|..|.||||+|+..++.++ ++|++.|+|++.+|.+|+|||++|+.. ++.|++|
T Consensus       157 ~~~~~~~~~~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~-~~~divk  227 (228)
T d1k1aa_         157 LSMVQLLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR-RVIDILR  227 (228)
T ss_dssp             HHHHHHHHHTT---CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH-HHHHHHT
T ss_pred             hhhhhhhhhhc---cccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC-CCccccC
Confidence            99999999998   7788899999999999999999998 999999999999999999999999874 8888775

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-32  Score=219.20  Aligned_cols=218  Identities=22%  Similarity=0.214  Sum_probs=118.1

Q ss_pred             CCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCC
Q 037701           72 KGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD  151 (358)
Q Consensus        72 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~  151 (358)
                      +|+||||+||..|+.++|+.|++........           ++..|..|.||||+|+..   ++.++++.|++.|++.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-----------in~~d~~g~TpL~~A~~~---~~~~iv~~Ll~~ga~~~   67 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----------LDIYNNLRQTPLHLAVIT---TLPSVVRLLVTAGASPM   67 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-----------SCCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-----------CCccCCCCCccceehhcc---ccccccccccccccccc
Confidence            3556666666666665555555432111000           234555556666666443   55566666666665555


Q ss_pred             CCCCCCccHHHHHHhcCcHHHHHHHHHhCCc---ccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCC
Q 037701          152 HRGPDGLTTLHAAVICNAEDVIKLLLEKKKI---LTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRG  228 (358)
Q Consensus       152 ~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g  228 (358)
                      .....+.++++.|....+.++++.+......   ..........++++.+.........+.+.....+.   .......+
T Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~  144 (228)
T d1k1aa_          68 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI---DAVDIKSG  144 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTTC
T ss_pred             ccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccc---ccccccch
Confidence            5555556666666666655555555443221   12233444555666666555555555555444321   12234455


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHh
Q 037701          229 MTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAA  308 (358)
Q Consensus       229 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~  308 (358)
                      .+|++.|+..+...+++.+++.+.. .+.+|..|.||||+|+..|+.+++++|+++|   ++++.+|..|+||||+|++.
T Consensus       145 ~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G---ad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         145 RSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSG---ADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCTTTTCSSH
T ss_pred             hhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHhC
Confidence            5666666666666666666665443 3455566666666666666666666666665   56666666666666666555


Q ss_pred             CC
Q 037701          309 CR  310 (358)
Q Consensus       309 ~~  310 (358)
                      ++
T Consensus       221 ~~  222 (228)
T d1k1aa_         221 RV  222 (228)
T ss_dssp             HH
T ss_pred             CC
Confidence            43

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.7e-33  Score=224.24  Aligned_cols=193  Identities=23%  Similarity=0.310  Sum_probs=88.4

Q ss_pred             CCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHH
Q 037701           33 KNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW  112 (358)
Q Consensus        33 ~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  112 (358)
                      |.||||+|+..|+   .+++..+++.+...+.+++.+|..|+||||+|+..|+.+++++|+++|++              
T Consensus         2 G~t~Lh~A~~~g~---~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d--------------   64 (221)
T d1iknd_           2 GDSFLHLAIIHEE---KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD--------------   64 (221)
T ss_dssp             CCCTTHHHHHTTC---SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC--------------
T ss_pred             CChHHHHHHHcCC---HHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc--------------
Confidence            5555555555555   44444433333333444555555555555555555555555555555544              


Q ss_pred             HHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCC------CCCCCCccHHHHHHhcCcHHHHHHHHHhCCccccc
Q 037701          113 MLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSAD------HRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRE  186 (358)
Q Consensus       113 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~------~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~  186 (358)
                       ++..+..|.|||+.++..   +..++++.+++.+....      .....|.||+|.|+..++.+++++++..+......
T Consensus        65 -~~~~d~~g~t~l~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  140 (221)
T d1iknd_          65 -PELRDFRGNTPLHLACEQ---GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ  140 (221)
T ss_dssp             -SCCCCTTCCCHHHHHHHH---TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             -cccccccccccccccccc---ccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc
Confidence             223444555555555443   45555555554443221      12223444444444444444444444444443333


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhh
Q 037701          187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH  250 (358)
Q Consensus       187 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~  250 (358)
                      .+..|.||||+|+..|+.+++++|++.|++    ++.++..|.||||+|+..++.+++++|++.
T Consensus       141 ~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad----~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         141 EPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             cccCCCCccccccccccHHHHHHHHhcCCc----ccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            334444444444444444444444444422    334444444444444444444444444443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.7e-30  Score=206.09  Aligned_cols=206  Identities=22%  Similarity=0.259  Sum_probs=182.8

Q ss_pred             cHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Q 037701           86 PAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAV  165 (358)
Q Consensus        86 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  165 (358)
                      .|+|++|+++|++.+.              ..|.+|.||||+|+..   |+.+++++|++.|++++.++..+.++++.++
T Consensus         2 ~~~v~~Ll~~g~din~--------------~~d~~G~t~L~~A~~~---g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~   64 (209)
T d1ot8a_           2 AQVISDLLAQGAELNA--------------TMDKTGETSLHLAARF---ARADAAKRLLDAGADANSQDNTGRTPLHAAV   64 (209)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HHHHHCCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHCCCCcCc--------------CcCCCCCCHHHHHHHc---CCHHHHHHHHhhccccccccccccccccccc
Confidence            5899999999999432              2589999999999765   9999999999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHH
Q 037701          166 ICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR  245 (358)
Q Consensus       166 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~  245 (358)
                      ..+......................+.++.+.+.........+.|.+.+.+    ++..+..|.||++.++..+..++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~----~~~~~~~~~t~l~~~~~~~~~~~~~  140 (209)
T d1ot8a_          65 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD----INAADNSGKTALHWAAAVNNTEAVN  140 (209)
T ss_dssp             HTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc----ccccCCCCCCcchhhcccCcceeee
Confidence            999988877777766665566677888999999999999999999988754    6778899999999999999999999


Q ss_pred             HHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eee
Q 037701          246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFI  316 (358)
Q Consensus       246 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~L  316 (358)
                      .+++.+.+ ++..|..|.||||+|+..|+.++++.|+++|   ++++.+|..|+||||+|++.++.++ ++|
T Consensus       141 ~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g---ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         141 ILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNF---ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eecccccc-ccccccccccccchhccccHHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999766 4888999999999999999999999999998   8899999999999999999998877 544

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-32  Score=219.06  Aligned_cols=196  Identities=20%  Similarity=0.184  Sum_probs=164.8

Q ss_pred             cCCcHHHHHHHHHhCCcH----HHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHH
Q 037701          120 EKNTALHEAVQSAAKGSV----EMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSL  195 (358)
Q Consensus       120 ~~~t~l~~a~~~~~~~~~----~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  195 (358)
                      +|.||||+|+..   ++.    ++++.+...++++|.++.+|.||||+|+..++.+++++|++.|++ .+.++..|.|||
T Consensus         1 dG~t~Lh~A~~~---g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIH---EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHT---TCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHH
T ss_pred             CCChHHHHHHHc---CCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc-cccccccccccc
Confidence            588999999875   553    566777788999999999999999999999999999999999888 577899999999


Q ss_pred             HHHHHcCCHHHHHHHhcCCCcc--cccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcC
Q 037701          196 HHAAYLGHSNITSMMLKSEDDK--IVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL  273 (358)
Q Consensus       196 ~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  273 (358)
                      +.++..++.++++.++..+...  ..........|.||+|.|+..++.+++++|++.+.......+..|.||||+|+..|
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccc
Confidence            9999999999999999875431  12234455678999999999999999999999987765555678999999999999


Q ss_pred             ChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcch
Q 037701          274 RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDM  322 (358)
Q Consensus       274 ~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~  322 (358)
                      +.+++++|+++|   ++++.+|..|+||||+|++.++.++ ++|++.+.+
T Consensus       157 ~~~~v~~Ll~~g---ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         157 NPDLVSLLLKCG---ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CHHHHHHHHTTT---CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cHHHHHHHHhcC---CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999998   8999999999999999999998888 778776654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2e-29  Score=199.88  Aligned_cols=205  Identities=22%  Similarity=0.272  Sum_probs=171.8

Q ss_pred             cchHHHHHHHHhhCccchhc-ccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHH
Q 037701           49 RVSTEFVEGILEMCPSLLLQ-VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE  127 (358)
Q Consensus        49 ~~~~~~l~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~  127 (358)
                      .++|++|++    .+.+++. .|.+|.||||+||..|+.+++++|++.|+.               ++..+..+.++++.
T Consensus         2 ~~~v~~Ll~----~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~---------------~n~~~~~~~~~~~~   62 (209)
T d1ot8a_           2 AQVISDLLA----QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD---------------ANSQDNTGRTPLHA   62 (209)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTSCCHHHH
T ss_pred             HHHHHHHHH----CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc---------------cccccccccccccc
Confidence            567788877    3677876 589999999999999999999999999888               44678889999999


Q ss_pred             HHHHHhCCcHHHHHHHHhcCC-CCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHH
Q 037701          128 AVQSAAKGSVEMVAEILENCP-SADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNI  206 (358)
Q Consensus       128 a~~~~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  206 (358)
                      ++..   .............. ........+.++.+.+.........+.|...+.. .+.++..|.|||+.++..+..++
T Consensus        63 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~  138 (209)
T d1ot8a_          63 AVAA---DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEA  138 (209)
T ss_dssp             HHHT---TCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cccc---cccccccccccccccccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCccee
Confidence            9764   66665555554443 2333455678888888888888899999888777 56778999999999999999999


Q ss_pred             HHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHH
Q 037701          207 TSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSL  281 (358)
Q Consensus       207 ~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  281 (358)
                      ++.+++.+.+    ++..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+++|+.+++++|
T Consensus       139 ~~~l~~~~~~----~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         139 VNILLMHHAN----RDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccc----ccccccccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999998854    677889999999999999999999999999887 588999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-28  Score=182.53  Aligned_cols=154  Identities=25%  Similarity=0.351  Sum_probs=144.0

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC
Q 037701          123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG  202 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  202 (358)
                      ++||+|+..   ++.++++.|+++|++++.++..|.||||+|+ .++.+++++|++.+++ .+..+..+.++++.++..+
T Consensus         3 ~~Lh~Aa~~---g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAAR---GDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHH---TCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHc---CCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccc-cccccccCccccccccccc
Confidence            899999776   9999999999999999999999999999886 7899999999999988 6778999999999999999


Q ss_pred             CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHh
Q 037701          203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLL  282 (358)
Q Consensus       203 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  282 (358)
                      ..+.++.+++.+.+    .+..+..|.+|+|+|+..++.+++++|+++++.+.+.+|..|.||||+|+..++.+++++|+
T Consensus        78 ~~~~~~~l~~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_          78 FLDTLQTLLEFQAD----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccc----ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999998854    67788999999999999999999999999998778899999999999999999999999999


Q ss_pred             cCc
Q 037701          283 ENP  285 (358)
Q Consensus       283 ~~~  285 (358)
                      ++|
T Consensus       154 ~~G  156 (156)
T d1ihba_         154 ANG  156 (156)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=2e-31  Score=226.96  Aligned_cols=238  Identities=14%  Similarity=0.093  Sum_probs=141.5

Q ss_pred             eeccCCCceehhhhccccccccchHHHHHHHHhhCccchhcccCCCCchhHHHHhcCCcHHHHHHHHHHHhhhHhhhcch
Q 037701           28 IATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGV  107 (358)
Q Consensus        28 ~~~~~~~t~l~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  107 (358)
                      .++..|.||||+|+.+|+   .++++++..+++ .+++++.+|..|.||||+|+..|+.++|++|++.|++...      
T Consensus        85 ~~~~~~~t~L~~Aa~~g~---~~~~~~~~~L~~-~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~------  154 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGC---SSALDTLCLLLT-SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM------  154 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCC---HHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH------
T ss_pred             hccCCCCcHHHHHHHhCC---HHHHHHHHHHHh-CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc------
Confidence            366678888888888888   777776544333 4667777888888888888888888888888888876432      


Q ss_pred             hHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCC---CCCCCCCccHHHHHHhcCcHHHHHHHHHhCCccc
Q 037701          108 DWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA---DHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILT  184 (358)
Q Consensus       108 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~  184 (358)
                             ...+..|.||||+|+..   |+.+++++|++.|++.   +..+.++.||++.|+..|+.+++++|++.|++..
T Consensus       155 -------~~~~~~g~t~L~~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         155 -------AMIQAENYHAFRLAAEN---GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             -------HHHSHHHHHHHHHHHHT---TCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             -------cccccCCCChhHHHHHH---hhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence                   12334577888888654   8888888888877654   2233445677777888888888888887765422


Q ss_pred             c------cccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccc-----cCCCCCCHHHHHHHcCcHHHHHHHHhhCCC
Q 037701          185 R------ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYK-----EDDRGMTALHLAASQGYERVVRRIIRHCPE  253 (358)
Q Consensus       185 ~------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-----~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~  253 (358)
                      .      .....+.+++..+...+..+....+.....+...++..     ....+.++++.|+..+..+++++|++.+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~  304 (346)
T d2ajaa1         225 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI  304 (346)
T ss_dssp             HHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTT
T ss_pred             hHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcCh
Confidence            1      11122233444444333333333332222110000000     001123556666666677777777765432


Q ss_pred             C----cccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          254 S----YSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       254 ~----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                      .    .+..+..|.||||+|++.|+.+++++|++.+
T Consensus       305 ~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         305 KALAPTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             GGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             hhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence            1    1223345667777777777777777777654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=9.8e-31  Score=222.60  Aligned_cols=237  Identities=12%  Similarity=0.073  Sum_probs=173.4

Q ss_pred             chhcccCCCCchhHHHHhcCCcHHHHH---HHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHH
Q 037701           65 LLLQVNDKGDTPLHVAAKCRHPAVVEV---LIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVA  141 (358)
Q Consensus        65 ~~~~~~~~g~t~Lh~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  141 (358)
                      .++.++..|.||||+|+..|+.+++++   |++.|++               ++..+..|.||||+|++.   |+.++++
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~---------------in~~~~~g~taL~~Aa~~---G~~~~v~  143 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI---------------VKVIQAENYQAFRLAAEN---GHLHVLN  143 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS---------------CC--CHHHHHHHHHHHHT---TCHHHHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc---------------ccccCCCCCCHHHHHHHC---CCHHHHH
Confidence            345678889999999999999887776   6888877               556888999999999665   9999999


Q ss_pred             HHHhcCCCCCCCC--CCCccHHHHHHhcCcHHHHHHHHHhCCccc--ccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcc
Q 037701          142 EILENCPSADHRG--PDGLTTLHAAVICNAEDVIKLLLEKKKILT--RERDRHGWTSLHHAAYLGHSNITSMMLKSEDDK  217 (358)
Q Consensus       142 ~Ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~--~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  217 (358)
                      +|++.|++++..+  .+|.||||+|+..|+.++|++|++.++...  +..+..+.||++.|+..|+.+++++|++.|++.
T Consensus       144 ~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         144 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             HHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            9999999988765  458999999999999999999999887532  334566778888899999999999999988542


Q ss_pred             ccc---ccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCC-ccccc-------CCCCcHHHHHHHcCChhHHHHHhcCcc
Q 037701          218 IVA---LYKEDDRGMTALHLAASQGYERVVRRIIRHCPES-YSIVD-------NRGWNARHFAMVSLRGGVLKSLLENPY  286 (358)
Q Consensus       218 ~~~---~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~-~~~~~-------~~g~t~l~~a~~~~~~~~~~~Ll~~~~  286 (358)
                      ...   .......+.++++.+...+..+....+....... .+..+       ..+.++++.|+..++.+++++|++.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~  303 (346)
T d2ajaa1         224 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG  303 (346)
T ss_dssp             HHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTT
T ss_pred             chHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcC
Confidence            211   1111223345566665555555544444332221 11111       123578888888999999999999875


Q ss_pred             c--cccccCCCCCCChHHHHHHHhCCCCc-eeecCC
Q 037701          287 V--ISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPD  319 (358)
Q Consensus       287 ~--~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~  319 (358)
                      .  ....+..+..|+||||+|++.|+..+ ++|++.
T Consensus       304 ~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         304 IKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             TGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            2  22344456678999999999999999 888875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-27  Score=178.46  Aligned_cols=154  Identities=23%  Similarity=0.246  Sum_probs=122.0

Q ss_pred             chhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCC
Q 037701           75 TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRG  154 (358)
Q Consensus        75 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~  154 (358)
                      +|||+|+..|+.++|++|+++|++               ++..|..|.||||+|+    .++.+++++|++.|++++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d---------------~n~~d~~g~TpL~~A~----~~~~ei~~~Ll~~~a~~~~~~   63 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN---------------VNAQNGFGRTALQVMK----LGNPEIARRLLLRGANPDLKD   63 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC---------------TTCCCTTSCCHHHHCC----SSCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------------cCccCCcccccccccc----ccccccccccccccccccccc
Confidence            678888888888888888888877               4457778888888763    367888888888888888888


Q ss_pred             CCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHH
Q 037701          155 PDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHL  234 (358)
Q Consensus       155 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~  234 (358)
                      ..+.++++.++..+..+.++.++..+.. .+..+..|.+|+++|+..++.+++++|+++++   .+.+.++..|.||||+
T Consensus        64 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          64 RTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDL  139 (156)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC---CCTTCCCTTSCCHHHH
T ss_pred             ccCccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc---ccccccCCCCCCHHHH
Confidence            8888888888888888888888877766 55667788888888888888888888887775   2456677788888888


Q ss_pred             HHHcCcHHHHHHHHhhC
Q 037701          235 AASQGYERVVRRIIRHC  251 (358)
Q Consensus       235 a~~~~~~~~v~~Ll~~~  251 (358)
                      |+..++.+++++|+++|
T Consensus       140 A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         140 ARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            88888888888888765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.3e-27  Score=198.21  Aligned_cols=185  Identities=16%  Similarity=0.067  Sum_probs=121.6

Q ss_pred             cCCCCCCC-CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCC-------HHHHHHHhcCCCcc
Q 037701          146 NCPSADHR-GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGH-------SNITSMMLKSEDDK  217 (358)
Q Consensus       146 ~~~~~~~~-~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~-------~~~~~~Ll~~~~~~  217 (358)
                      .+.++|.. |..|.||||+|+..|+.++|++|++.|++ .+.++..|.||||.|+..++       .++++++...    
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----  169 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----  169 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----
Confidence            45667754 77888888888888888888888888877 56778888888888887654       2444444432    


Q ss_pred             cccccccCCCCCCHHHHHHHcCc----H--------HHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCc
Q 037701          218 IVALYKEDDRGMTALHLAASQGY----E--------RVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENP  285 (358)
Q Consensus       218 ~~~~~~~~~~g~t~l~~a~~~~~----~--------~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  285 (358)
                         ....+..|+||||.++..+.    .        .++.++.+.+..........+.++++.+...........+....
T Consensus       170 ---~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
T d1sw6a_         170 ---LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW  246 (301)
T ss_dssp             ---GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHH
T ss_pred             ---hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHH
Confidence               34467788888887765432    2        24455666655555555566677777766655544444332211


Q ss_pred             cccccccCCCCCCChHHHHHHHhCCCCc-eeecCCcchHHHHhhCCCchhhHhh
Q 037701          286 YVISLIHGRDKNGNTPLHVLAAACRDSS-YFIVPDSDMYEAVNKQNTSVEHIVR  338 (358)
Q Consensus       286 ~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a~  338 (358)
                      .....+|.+|..|+||||+|++.++..+ ++|++.|||++.+|+.|.|||++|+
T Consensus       247 ~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         247 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            1224478899999999999999999988 9999999999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=168.61  Aligned_cols=149  Identities=25%  Similarity=0.245  Sum_probs=93.1

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC
Q 037701          123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG  202 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  202 (358)
                      |||+.|++.   |+.++++.|+++|++++ .+..|.||||+|+..++.++++.++..... .......+.++++.++...
T Consensus         4 t~L~~Aa~~---g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           4 KKLLEAARA---GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHH---TCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHC---CCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            666666554   66666666666666555 355666666666666666666666655444 2344555566666666666


Q ss_pred             CHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHH
Q 037701          203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSL  281 (358)
Q Consensus       203 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  281 (358)
                      +.+.++++...+.+    .+.++..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+.+|+.+++++|
T Consensus        79 ~~~~~~~l~~~~~~----~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCc----cccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            66666666666533    444566666666666666666666666666554 356666666666666666666666544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.3e-25  Score=167.05  Aligned_cols=150  Identities=21%  Similarity=0.259  Sum_probs=135.0

Q ss_pred             CccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHH
Q 037701          157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAA  236 (358)
Q Consensus       157 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~  236 (358)
                      ..|||+.|++.|+.++|++|+++|++. + .+..|.||||+|+..++.++++.++.....    .......+.++++.++
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS----RDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCcccccccccccccccccccccccc----cccccccccccccccc
Confidence            359999999999999999999999874 3 689999999999999999999999987754    3445667889999999


Q ss_pred             HcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhCCCCc-ee
Q 037701          237 SQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSS-YF  315 (358)
Q Consensus       237 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~~~~~-~~  315 (358)
                      ...+.++++++...+.+. +.++..|.||||+|+..|+.+++++|+++|   ++++.+|..|.||||+|+++|+.++ ++
T Consensus        76 ~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g---ad~~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccc---cCCcccCCCCCCHHHHHHHcCCHHHHHh
Confidence            999999999999998764 778999999999999999999999999999   8999999999999999999998877 54


Q ss_pred             e
Q 037701          316 I  316 (358)
Q Consensus       316 L  316 (358)
                      |
T Consensus       152 L  152 (153)
T d1awcb_         152 L  152 (153)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-25  Score=166.70  Aligned_cols=151  Identities=21%  Similarity=0.271  Sum_probs=132.2

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhc-CCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHc
Q 037701          123 TALHEAVQSAAKGSVEMVAEILEN-CPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYL  201 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  201 (358)
                      ..|+.|+..   |+.++++.|++. +.+++..+..|.||||+|+. ++.+++++|++.+.+ .+..+..|.+|++.++..
T Consensus         4 ~~L~~Aa~~---g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAAR---GDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS-PNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHH---TCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHc---CCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccc-cccccccccccccccccc
Confidence            458999776   999999999875 68999999999999998874 788999999998887 567788899999999999


Q ss_pred             CCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHH
Q 037701          202 GHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSL  281 (358)
Q Consensus       202 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  281 (358)
                      ++.++++++++.+.+    ++.++..|.||||+|+..|+.+++++|++ +++ ++.+|..|+||||+|+..|+.+++++|
T Consensus        79 ~~~~~~~~~l~~~~~----~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~L  152 (156)
T d1bd8a_          79 GFLDTLKVLVEHGAD----VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESD-LHRRDARGLTPLELALQRGAQDLVDIL  152 (156)
T ss_dssp             TCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-TSC-TTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred             ccccccccccccccc----cccccCCCCeeeccccccccccccccccc-ccc-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999998854    67788899999999999999999998874 444 578899999999999999999999999


Q ss_pred             hcC
Q 037701          282 LEN  284 (358)
Q Consensus       282 l~~  284 (358)
                      +++
T Consensus       153 l~h  155 (156)
T d1bd8a_         153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.8e-26  Score=170.74  Aligned_cols=151  Identities=26%  Similarity=0.302  Sum_probs=136.5

Q ss_pred             chhHHHHhcCCcHHHHHHHHH-HHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCC
Q 037701           75 TPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHR  153 (358)
Q Consensus        75 t~Lh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~  153 (358)
                      +.|+.|+..|+.++|+.|++. +.+               ++..|..|.||||+|+.    ++.+++++|++.+.+++..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~---------------~n~~d~~g~t~L~~A~~----~~~~~v~~Ll~~~~~~~~~   64 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH---------------PDALNRFGKTALQVMMF----GSTAIALELLKQGASPNVQ   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC---------------TTCCCTTSCCHHHHSCT----TCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC---------------CCccCCCCCcccccccc----ccccccccccccccccccc
Confidence            469999999999999999986 444               44688999999999852    7889999999999999999


Q ss_pred             CCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHH
Q 037701          154 GPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH  233 (358)
Q Consensus       154 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~  233 (358)
                      +..|.+|++.++..++.++++++++++.+ .+.++..|.||||+|+..|+.+++++|+. ++    +++.++..|+||||
T Consensus        65 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~~----~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          65 DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ES----DLHRRDARGLTPLE  138 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-TS----CTTCCCTTSCCHHH
T ss_pred             ccccccccccccccccccccccccccccc-cccccCCCCeeeccccccccccccccccc-cc----cccccCCCCCCHHH
Confidence            99999999999999999999999999887 56789999999999999999999998884 53    47788999999999


Q ss_pred             HHHHcCcHHHHHHHHhh
Q 037701          234 LAASQGYERVVRRIIRH  250 (358)
Q Consensus       234 ~a~~~~~~~~v~~Ll~~  250 (358)
                      +|+..|+.+++++|+++
T Consensus       139 ~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhh
Confidence            99999999999999976

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=6.6e-26  Score=161.26  Aligned_cols=104  Identities=15%  Similarity=0.092  Sum_probs=76.4

Q ss_pred             CHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHHHhC
Q 037701          230 TALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC  309 (358)
Q Consensus       230 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~~~~  309 (358)
                      |||++|++.|+.+++++|++.+.+ ++.++..|+||||+|+..++.+++++|+++|   ++++.+|..|+||||+|+..+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g---~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKG---ADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSS---CTTTCCSSSCSCHHHHHHTTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc-ccccccccccccccccccccccccccccccc---ceeeecccccccchhhhhhcC
Confidence            577777777777777777776654 4667777777777777777777777777776   677777777777777777777


Q ss_pred             CCCc-eeecCCcchHHHHhhCCCchhhHh
Q 037701          310 RDSS-YFIVPDSDMYEAVNKQNTSVEHIV  337 (358)
Q Consensus       310 ~~~~-~~Ll~~g~~~~~~~~~g~t~l~~a  337 (358)
                      +..+ ++|++.|+|++.+|..|+||+++|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            7776 777777777777777777777766

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.1e-25  Score=185.12  Aligned_cols=177  Identities=18%  Similarity=0.158  Sum_probs=120.4

Q ss_pred             cccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcH---HHHHHHHHhCCcccccccCCCCCH
Q 037701          118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAE---DVIKLLLEKKKILTRERDRHGWTS  194 (358)
Q Consensus       118 ~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~---~~v~~Ll~~~~~~~~~~~~~~~t~  194 (358)
                      |..|.||||+|+..   ++.++++.|++.|++++.++..|.||||.|+..++.   ..+..+++.........+..|+||
T Consensus       104 D~~G~T~LH~Aa~~---g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSI---ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHT---TCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCH
Confidence            78899999999765   999999999999999999999999999999987652   122223322222345678899999


Q ss_pred             HHHHHHcCC----HH--------HHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHH-----HHHHhhCCCCccc
Q 037701          195 LHHAAYLGH----SN--------ITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVV-----RRIIRHCPESYSI  257 (358)
Q Consensus       195 l~~a~~~~~----~~--------~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v-----~~Ll~~~~~~~~~  257 (358)
                      ||.++..+.    ..        +++++...+..   ........+.++++.+........+     ..++..   .++.
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~in~  254 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR---PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN---MLNA  254 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGC---CEEEC----------------CHHHHHCSHHHHHHH---TTTC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCc---chhcccccccchhHHHHhcchHHHHHHHhhHHHHhc---CccC
Confidence            998886543    22        23344444322   1222333445555555444332222     223332   2577


Q ss_pred             ccCCCCcHHHHHHHcCChhHHHHHhcCccccccccCCCCCCChHHHHHH
Q 037701          258 VDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA  306 (358)
Q Consensus       258 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a~  306 (358)
                      +|..|+||||+|++.|+.+++++|+++|   ++++.+|..|.|||++|+
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~G---Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDYG---ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTT---CCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHcC
Confidence            8999999999999999999999999999   999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=155.36  Aligned_cols=118  Identities=22%  Similarity=0.220  Sum_probs=62.0

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCC-CCHHHHHHHc
Q 037701          123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHG-WTSLHHAAYL  201 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~t~l~~a~~~  201 (358)
                      ++||.|+..   |+.+++++|+++|++++.++..|.||+|.|+ .|+.+++++|+++|++. +.++..+ .||||+|++.
T Consensus         5 ~~L~~Aa~~---G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           5 DWLATAAAR---GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             THHHHHHHH---TCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             hHHHHHHHC---CCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            455555444   5555555555555555555555555555443 35555555555555542 2333333 2455555555


Q ss_pred             CCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHh
Q 037701          202 GHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR  249 (358)
Q Consensus       202 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~  249 (358)
                      |+.+++++|++.|.+    ++.+|..|+||||+|++.|+.+++++|++
T Consensus        80 g~~~~v~~Ll~~ga~----~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR----LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCC----SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc----cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            555555555555532    44455555555555555555555555543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.7e-24  Score=153.84  Aligned_cols=106  Identities=16%  Similarity=0.114  Sum_probs=83.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHH
Q 037701          192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMV  271 (358)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  271 (358)
                      .|||.+|++.|+.+++++|++.|.+    ++.++..|+||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d----~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED----VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC----CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc----cccccccccccccccccccccccccccccccce-eeecccccccchhhhhh
Confidence            3678888888888888888877744    666777788888888888888888888887665 47778888888888888


Q ss_pred             cCChhHHHHHhcCccccccccCCCCCCChHHHHH
Q 037701          272 SLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL  305 (358)
Q Consensus       272 ~~~~~~~~~Ll~~~~~~~~~~~~~~~g~tpL~~a  305 (358)
                      .++.+++++|+++|   ++++.+|..|.||||+|
T Consensus        78 ~~~~~~v~~Ll~~G---ad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          78 EGHVSCVKLLLSKG---ADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             TTCCHHHHHHHTTC---CCSSSSSSSTCCCCCTC
T ss_pred             cCchhhhhhhhccc---ccceeeCCCCCCHHHHH
Confidence            88888888888887   77888888888888876

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=150.86  Aligned_cols=120  Identities=16%  Similarity=0.168  Sum_probs=108.7

Q ss_pred             CccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCC-CHHHHH
Q 037701          157 GLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGM-TALHLA  235 (358)
Q Consensus       157 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~l~~a  235 (358)
                      +.++||+|+..|+.+++++|+++|++ ++.++..|.||+|+|+ .|+.+++++|++.|++    ++..+..+. ||||+|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~----~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE----PNCADPATLTRPVHDA   76 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC----CCCCCTTTCCCHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccc----cccccccccccccccc
Confidence            56899999999999999999999987 6788999999999775 7999999999999865    666777765 699999


Q ss_pred             HHcCcHHHHHHHHhhCCCCcccccCCCCcHHHHHHHcCChhHHHHHhc
Q 037701          236 ASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE  283 (358)
Q Consensus       236 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  283 (358)
                      ++.|+.+++++|++.+.+ ++.+|..|+||||+|+++|+.+++++|++
T Consensus        77 ~~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999876 58999999999999999999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5e-23  Score=148.82  Aligned_cols=120  Identities=21%  Similarity=0.364  Sum_probs=64.0

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcC
Q 037701          123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLG  202 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  202 (358)
                      ++|+.|+..   |+.++++.|+++|++++.++.+|.||||+|+..++.+++++|++.+.+ .+.++.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~---G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLE---GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHH---TCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHc---CCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccc-cccccccCcccccccchhh
Confidence            345555444   555555555555555555555555555555555555555555555544 3445555555555555555


Q ss_pred             CHHHHHHHhcCCCcccccccccC-CCCCCHHHHH--HHcCcHHHHHHHHhh
Q 037701          203 HSNITSMMLKSEDDKIVALYKED-DRGMTALHLA--ASQGYERVVRRIIRH  250 (358)
Q Consensus       203 ~~~~~~~Ll~~~~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~v~~Ll~~  250 (358)
                      +.+++++|+++|++    ++..+ ..+.||++.+  .+.|+.+++++|+..
T Consensus        79 ~~~~v~~Ll~~ga~----v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          79 NVQVCKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCC----cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            55555555555533    33222 2344544433  344555555555543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.1e-22  Score=143.04  Aligned_cols=119  Identities=18%  Similarity=0.183  Sum_probs=71.4

Q ss_pred             cHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHc
Q 037701          159 TTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQ  238 (358)
Q Consensus       159 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~  238 (358)
                      ++|+.|+..|+.+++++|+++|++ ++.++..|.||||+|+..++.+++++|++.+.+    ++.+|..|+||||+|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~----~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN----VNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccc----cccccccCcccccccchh
Confidence            456666666666666666666655 455566666666666666666666666666533    555566666666666666


Q ss_pred             CcHHHHHHHHhhCCCCccccc-CCCCcHHHHH--HHcCChhHHHHHhc
Q 037701          239 GYERVVRRIIRHCPESYSIVD-NRGWNARHFA--MVSLRGGVLKSLLE  283 (358)
Q Consensus       239 ~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~  283 (358)
                      |+.+++++|++++++. +..+ ..|.||++++  +..|+.+++++|++
T Consensus        78 g~~~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          78 NNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            6666666666665543 3222 3455555443  34556666666654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.4e-21  Score=144.78  Aligned_cols=130  Identities=25%  Similarity=0.274  Sum_probs=108.6

Q ss_pred             hhHHHHhcCCcHHHHHHHHHHHhhhHhhhcchhHHHHHHHhhcccCCcHHHHHHHHHhCCcHHHHHHHHhcCCCCCCCCC
Q 037701           76 PLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGP  155 (358)
Q Consensus        76 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~~~  155 (358)
                      .|..|++.++...+..++..|.+......         ....+..|.||||+|++....+..+++++|+++|++++.++.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~---------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~   79 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIP---------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG   79 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCC---------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCC---------cccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh
Confidence            45677888999888888888776432211         113466789999999876556788999999999999999999


Q ss_pred             CCccHHHHHHhcCcHHHHHHHHHhCCcccccccCCCCCHHHHHHHcCCHHHHHHHhcCCC
Q 037701          156 DGLTTLHAAVICNAEDVIKLLLEKKKILTRERDRHGWTSLHHAAYLGHSNITSMMLKSED  215 (358)
Q Consensus       156 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  215 (358)
                      .|.||||+|+..|+.+++++|+++|++ .+.++..|.||||+|++.|+.+++++|++.+.
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhccccccccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999999999888 57789999999999999999999999998664

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=6.9e-21  Score=140.96  Aligned_cols=127  Identities=14%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             cHHHHHHHHHhCCcHHHHHHHHhcCCCCCCC------CCCCccHHHHHHhc---CcHHHHHHHHHhCCcccccccCCCCC
Q 037701          123 TALHEAVQSAAKGSVEMVAEILENCPSADHR------GPDGLTTLHAAVIC---NAEDVIKLLLEKKKILTRERDRHGWT  193 (358)
Q Consensus       123 t~l~~a~~~~~~~~~~~~~~Ll~~~~~~~~~------~~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~t  193 (358)
                      ++||..+.....++...+..++..|.+++..      +..|.||||+|++.   +..+++++|++.|++ ++.++..|.|
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~T   83 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGST   83 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhcc
Confidence            4444433333457888888888888776543      45577888888763   567788888888776 5677778888


Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCcccccccccCCCCCCHHHHHHHcCcHHHHHHHHhhCCCC
Q 037701          194 SLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES  254 (358)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~  254 (358)
                      |||+|+..|+.+++++|++.|++    ++.+|..|.||||+|++.|+.+++++|++.+...
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKAS----IEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccCcc----ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            88888888888888888887744    6667778888888888888888888887765443