Citrus Sinensis ID: 037740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKDDAL
Secondary Structure (PSIPRED)
cEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccEEEEEccEEEccccEEEccccccHHHHHHHHHccccccccccEEEEEccccEEEEcccccccHHHHHHcccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccEEEcccEEEccEEEEEcccccHHHHHHHHHcccccccccEEEEEEccccccEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MQVAVIGGGISGLASAFVLAKAGVDVVLYEkedslgghaktitidgvdldlgftlfnhatspntmEFFDSLgvdmkssdmsfsvsldkgqgfewgtrngfSSLFAQKKNLLNPYFWQMLWEINKFKDDAL
Flexible Loop (DISEMBL)
MQVAVIGGGISGLASAFVLAKAGVDVVLYEkedslgghakTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKDDAL
Low Complexity Region (SEG)
MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKDDAL
Disordered region (IsUnstruct)
***AVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVD*******FSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKF*****
Disordered Region (DISOPRED)
MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKDDAL
Disordered Region (DISEMBL)
MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKDDAL
Disordered Region (DISPRO)
MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKDDAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKDDAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q94IG7	531	Protoporphyrinogen oxidas	N/A	no	0.830	0.203	0.295	5e-07
Q7A3E2	502	Dehydrosqualene desaturas	yes	no	0.423	0.109	0.4	2e-06
Q99R76	502	Dehydrosqualene desaturas	yes	no	0.423	0.109	0.4	2e-06
O07855	502	Dehydrosqualene desaturas	yes	no	0.423	0.109	0.4	2e-06
Q2FV60	502	Dehydrosqualene desaturas	yes	no	0.423	0.109	0.4	2e-06
Q2FDU6	502	Dehydrosqualene desaturas	N/A	no	0.423	0.109	0.4	2e-06
O24164	504	Protoporphyrinogen oxidas	N/A	no	0.861	0.222	0.304	2e-06
Q8NUQ6	502	Dehydrosqualene desaturas	yes	no	0.423	0.109	0.4	3e-06
Q6G6B3	502	Dehydrosqualene desaturas	yes	no	0.423	0.109	0.4	3e-06
Q2YWE8	502	Dehydrosqualene desaturas	yes	no	0.423	0.109	0.4	5e-06

>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 24/132 (18%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           +VAV+G G+SGLA+A+ L   G++V L+E +   GG  KT+  DG+  D G      +  
Sbjct: 44  RVAVVGAGVSGLAAAYKLKSNGLNVTLFEADSRAGGKLKTVVKDGLIWDEGANTMTESDE 103

Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQ------KKNLLN--- 112
             T   FD LG+  K       + L   Q   +  R+G   L         K N+L+   
Sbjct: 104 EVT-SLFDDLGIREK-------LQLPISQNKRYIARDGLPVLLPSNPVALLKSNILSAKS 155

Query: 113 -------PYFWQ 117
                  P+ W+
Sbjct: 156 KLQIMLEPFLWK 167

Provides precursor for the mitochondrial and plastidic heme synthesis and the predominant chlorophyll synthesis in plastids.
Spinacia oleracea (taxid: 3562)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 4

>sp|Q7A3E2|CRTN_STAAN Dehydrosqualene desaturase OS=Staphylococcus aureus (strain N315) GN=crtN PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTL 55
          M++AVIG G++GLA+A  +A  G +V ++EK +++GG    +  DG   D+G T+
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTI 55

Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product. Those are initial steps in the biosynthesis of staphyloxanthin, an orange carotenoid present in most staphylococci strains.

Staphylococcus aureus (strain N315) (taxid: 158879)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 2

>sp|Q99R76|CRTN_STAAM Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=crtN PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTL 55
          M++AVIG G++GLA+A  +A  G +V ++EK +++GG    +  DG   D+G T+
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTI 55

Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product. Those are initial steps in the biosynthesis of staphyloxanthin, an orange carotenoid present in most staphylococci strains.

Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 2

>sp|O07855|CRTN_STAAE Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Newman) GN=crtN PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTL 55
          M++AVIG G++GLA+A  +A  G +V ++EK +++GG    +  DG   D+G T+
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTI 55

Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product. Those are initial steps in the biosynthesis of staphyloxanthin, an orange carotenoid present in most staphylococci strains.

Staphylococcus aureus (strain Newman) (taxid: 426430)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 2

>sp|Q2FV60|CRTN_STAA8 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain NCTC 8325) GN=crtN PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTL 55
          M++AVIG G++GLA+A  +A  G +V ++EK +++GG    +  DG   D+G T+
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTI 55

Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product. Those are initial steps in the biosynthesis of staphyloxanthin, an orange carotenoid present in most staphylococci strains.

Staphylococcus aureus (strain NCTC 8325) (taxid: 93061)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 2

>sp|Q2FDU6|CRTN_STAA3 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain USA300) GN=crtN PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTL 55
          M++AVIG G++GLA+A  +A  G +V ++EK +++GG    +  DG   D+G T+
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTI 55

Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product. Those are initial steps in the biosynthesis of staphyloxanthin, an orange carotenoid present in most staphylococci strains.

Staphylococcus aureus (strain USA300) (taxid: 367830)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 2

>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           +VAVIG G+SGLA+A+ L   G++V ++E E   GG  ++++ DG+  D G      +  
Sbjct: 15  RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEG 74

Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGT------------RNGFSSLFAQKKN 109
             T    DSLG+  K     F +S +K      GT            ++ F S  ++ + 
Sbjct: 75  DVTF-LIDSLGLREK---QQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQM 130

Query: 110 LLNPYFWQ 117
           LL P  W+
Sbjct: 131 LLEPILWK 138

Provides precursor for the mitochondrial and plastidic heme synthesis and the predominant chlorophyll synthesis in plastids.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8NUQ6|CRTN_STAAW Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MW2) GN=crtN PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTL 55
          M++AVIG G++GLA+A  +A  G +V ++EK +++GG    +  DG   D+G T+
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTI 55

Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product. Those are initial steps in the biosynthesis of staphyloxanthin, an orange carotenoid present in most staphylococci strains.

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 2

>sp|Q6G6B3|CRTN_STAAS Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MSSA476) GN=crtN PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTL 55
          M++AVIG G++GLA+A  +A  G +V ++EK +++GG    +  DG   D+G T+
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTI 55

Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product. Those are initial steps in the biosynthesis of staphyloxanthin, an orange carotenoid present in most staphylococci strains.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 2

>sp|Q2YWE8|CRTN_STAAB Dehydrosqualene desaturase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=crtN PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTL 55
          M++AVIG G++GLA+A  +A  G +V ++EK  ++GG    +  DG   D+G T+
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNTNVGGRMNQLKKDGFTFDMGPTI 55

Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product. Those are initial steps in the biosynthesis of staphyloxanthin, an orange carotenoid present in most staphylococci strains.

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
224099967	862	predicted protein [Populus trichocarpa]	1.0	0.150	0.769	4e-54
224107479	866	predicted protein [Populus trichocarpa]	1.0	0.150	0.761	2e-53
147791135	874	hypothetical protein VITISV_025151 [Viti	1.0	0.148	0.715	9e-52
225433227	865	PREDICTED: uncharacterized protein LOC10	1.0	0.150	0.723	1e-51
255575825	865	methyltransferase, putative [Ricinus com	1.0	0.150	0.730	2e-51
449458900	1611	PREDICTED: uncharacterized protein LOC10	0.815	0.065	0.744	4e-51
449528742	166	PREDICTED: protoporphyrinogen oxidase, c	0.992	0.777	0.744	7e-51
109676320	1664	cyclopropane fatty acid synthase [Populu	1.0	0.078	0.647	6e-50
255582094	868	2-heptaprenyl-1,4-naphthoquinone methylt	0.992	0.148	0.748	7e-50
255574943	809	cyclopropane-fatty-acyl-phospholipid syn	1.0	0.160	0.707	8e-50

>gi|224099967|ref|XP_002311690.1| predicted protein [Populus trichocarpa] gi|222851510|gb|EEE89057.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/130 (76%), Positives = 114/130 (87%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M+VAV+G GISGL SA+VLAKAGV+VVLYEKED LGGHAKT++ DGVDLDLGF +FN  T
Sbjct: 1   MRVAVVGAGISGLVSAYVLAKAGVEVVLYEKEDYLGGHAKTVSFDGVDLDLGFMVFNRVT 60

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
            PN MEFF+SLG+DM+ SDMSFSVSLD+GQG EWG+RNG S LFAQKKN+LNPYFW+ML 
Sbjct: 61  YPNMMEFFESLGIDMELSDMSFSVSLDEGQGCEWGSRNGLSGLFAQKKNMLNPYFWKMLR 120

Query: 121 EINKFKDDAL 130
           EI KFKDD L
Sbjct: 121 EIIKFKDDVL 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107479|ref|XP_002314493.1| predicted protein [Populus trichocarpa] gi|222863533|gb|EEF00664.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/130 (76%), Positives = 113/130 (86%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M+VAV+G GISGL SA+VLAKAG +VVLYEKEDSLGGHAKT+  DGVDLDLGF +FN  T
Sbjct: 1   MRVAVVGAGISGLVSAYVLAKAGAEVVLYEKEDSLGGHAKTVCFDGVDLDLGFMVFNRVT 60

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
            PN MEFF++LG+DM+ SDMSFSVSLD+G+G EWG+RNGFS LFAQKKN LNPYFW+ML 
Sbjct: 61  YPNMMEFFENLGIDMELSDMSFSVSLDQGKGCEWGSRNGFSGLFAQKKNALNPYFWKMLR 120

Query: 121 EINKFKDDAL 130
           EI KFKDD L
Sbjct: 121 EIVKFKDDVL 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791135|emb|CAN68017.1| hypothetical protein VITISV_025151 [Vitis vinifera]

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 93/130 (71%), Positives = 113/130 (86%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M+ AVIG G+SGL SA+VLA+AG+ VVLYEKED LGGHAKT+T+DGV LDLGF +FN  T
Sbjct: 1   MRAAVIGAGVSGLVSAYVLARAGMKVVLYEKEDYLGGHAKTVTVDGVPLDLGFMVFNRVT 60

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
            PN MEFF++LGVBM+ SDMSF+VSLD+G+G EWG+RNG SSLFAQKKN+LNPYFWQM+ 
Sbjct: 61  YPNMMEFFETLGVBMELSDMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQMIG 120

Query: 121 EINKFKDDAL 130
           ++ KFKDD L
Sbjct: 121 DVIKFKDDVL 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433227|ref|XP_002281958.1| PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera]

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/130 (72%), Positives = 113/130 (86%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M+ AVIG G+SGL SA+VLA+AG+ VVLYEKED LGGHAKT+T+DGV LDLGF +FN  T
Sbjct: 1   MRAAVIGAGVSGLVSAYVLARAGMKVVLYEKEDYLGGHAKTVTVDGVPLDLGFMVFNRVT 60

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
            PN MEFF++LGVDM+ SDMSF+VSLD+G+G EWG+RNG SSLFAQKKN+LNPYFWQM+ 
Sbjct: 61  YPNMMEFFETLGVDMELSDMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQMIG 120

Query: 121 EINKFKDDAL 130
           ++ KFKDD L
Sbjct: 121 DVIKFKDDVL 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575825|ref|XP_002528810.1| methyltransferase, putative [Ricinus communis] gi|223531722|gb|EEF33544.1| methyltransferase, putative [Ricinus communis]

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/130 (73%), Positives = 109/130 (83%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M+VAV+GGGISGL SA+VLAK GV+VVLYEKE+ LGGHAKT+  DGVDLDLGF +FN  T
Sbjct: 1   MRVAVVGGGISGLVSAYVLAKDGVEVVLYEKEEYLGGHAKTVCFDGVDLDLGFMVFNCVT 60

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
            PN MEFF+SLGVDM+ SDMSFSVSLD G+G+EWG+RNG   LFAQK N  NPYFWQM+ 
Sbjct: 61  YPNMMEFFESLGVDMELSDMSFSVSLDNGKGYEWGSRNGLPGLFAQKTNAFNPYFWQMIR 120

Query: 121 EINKFKDDAL 130
           E+ KFKDD L
Sbjct: 121 EVIKFKDDVL 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458900|ref|XP_004147184.1| PREDICTED: uncharacterized protein LOC101213850 [Cucumis sativus]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/129 (74%), Positives = 114/129 (88%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M+VAV+GGGISGL SAFVLA+AGV+VVL+EKED +GGH+KT+  DGVDLDLGF +FN  T
Sbjct: 774 MKVAVVGGGISGLVSAFVLAEAGVEVVLFEKEDYVGGHSKTVHFDGVDLDLGFMVFNTVT 833

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
            PN MEFF++LGV+M+ SDMSFSVSLD+G+G EWG+RNG SSLF+QKKNLLNPYFWQM+ 
Sbjct: 834 YPNMMEFFENLGVEMEISDMSFSVSLDRGRGCEWGSRNGLSSLFSQKKNLLNPYFWQMIR 893

Query: 121 EINKFKDDA 129
           EI KFKDD 
Sbjct: 894 EIVKFKDDV 902

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528742|ref|XP_004171362.1| PREDICTED: protoporphyrinogen oxidase, chloroplastic/mitochondrial-like, partial [Cucumis sativus]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 96/129 (74%), Positives = 114/129 (88%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M+VAV+GGGISGL SAFVLA+AGV+VVL+EKED +GGH+KT+  DGVDLDLGF +FN  T
Sbjct: 1   MKVAVVGGGISGLVSAFVLAEAGVEVVLFEKEDYVGGHSKTVHFDGVDLDLGFMVFNTVT 60

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
            PN MEFF++LGV+M+ SDMSFSVSLD+G+G EWG+RNG SSLF+QKKNLLNPYFWQM+ 
Sbjct: 61  YPNMMEFFENLGVEMEISDMSFSVSLDRGRGCEWGSRNGLSSLFSQKKNLLNPYFWQMIR 120

Query: 121 EINKFKDDA 129
           EI KFKDD 
Sbjct: 121 EIVKFKDDV 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109676320|gb|ABG37642.1| cyclopropane fatty acid synthase [Populus trichocarpa]

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 99/153 (64%), Positives = 113/153 (73%), Gaps = 23/153 (15%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFN--- 57
           M+VAV+G GISGL SA+VLAKAG +VVLYEKEDSLGGHAKT+  DGVDLDLGF +FN   
Sbjct: 1   MRVAVVGAGISGLVSAYVLAKAGAEVVLYEKEDSLGGHAKTVCFDGVDLDLGFMVFNRVV 60

Query: 58  --------------------HATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTR 97
                                 T PN MEFF++LG+DM+ SDMSFSVSLD+G+G EWG+R
Sbjct: 61  GFVTNLRVGLIDLEGYWDHEQVTYPNMMEFFENLGIDMELSDMSFSVSLDQGKGCEWGSR 120

Query: 98  NGFSSLFAQKKNLLNPYFWQMLWEINKFKDDAL 130
           NGFS LFAQKKN LNPYFW+ML EI KFKDD L
Sbjct: 121 NGFSGLFAQKKNALNPYFWKMLREIVKFKDDVL 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582094|ref|XP_002531842.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative [Ricinus communis] gi|223528513|gb|EEF30540.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 98/131 (74%), Positives = 113/131 (86%), Gaps = 2/131 (1%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA-KTITIDGVDLDLGFTLFNHA 59
           M+VAVIGGGISGLASA+VLAKAG +VV+YEKED LGGHA KT+   GVD+DLGF  FN A
Sbjct: 1   MRVAVIGGGISGLASAYVLAKAGAEVVVYEKEDCLGGHANKTVNYKGVDVDLGFLAFNPA 60

Query: 60  TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQML 119
           + PN MEFF+S+GVDM+ SDMSFSVS+DKG+G+EWG+R G SSLFAQKKN  NPYFWQML
Sbjct: 61  SYPN-MEFFESIGVDMELSDMSFSVSIDKGKGYEWGSRKGLSSLFAQKKNSFNPYFWQML 119

Query: 120 WEINKFKDDAL 130
            +INKFK DAL
Sbjct: 120 RDINKFKHDAL 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574943|ref|XP_002528378.1| cyclopropane-fatty-acyl-phospholipid synthase, putative [Ricinus communis] gi|223532246|gb|EEF34050.1| cyclopropane-fatty-acyl-phospholipid synthase, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 92/130 (70%), Positives = 108/130 (83%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M+VAVIGGGISGL S +VLA+ GV VVLYEKE+ +GGHAKT+  DGV+LDLGF +FN  T
Sbjct: 1   MKVAVIGGGISGLVSTYVLARNGVKVVLYEKEEYIGGHAKTVCFDGVELDLGFMVFNRVT 60

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
            PN  EFF+SLGVD++ SDMSFSVSLD G+G+EWG+RNG S LFAQK N +NPYFWQM+ 
Sbjct: 61  YPNMTEFFESLGVDLELSDMSFSVSLDHGKGYEWGSRNGLSGLFAQKTNAINPYFWQMIR 120

Query: 121 EINKFKDDAL 130
           EI KFKDD L
Sbjct: 121 EIIKFKDDVL 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2088070	867	AT3G23530 [Arabidopsis thalian	1.0	0.149	0.717	3.2e-46
TAIR|locus:2088712	867	AT3G23510 [Arabidopsis thalian	1.0	0.149	0.709	8.8e-46
UNIPROTKB|Q0C192	438	HNE_1797 "Putative uncharacter	0.946	0.280	0.462	1.9e-21
UNIPROTKB|Q48MU4	415	PSPPH_1007 "Uncharacterized pr	0.938	0.293	0.441	5.4e-21
UNIPROTKB|Q74AM5	414	GSU2327 "Uncharacterized prote	0.969	0.304	0.436	1.2e-20
TIGR_CMR|GSU_2327	414	GSU_2327 "conserved hypothetic	0.969	0.304	0.436	1.2e-20
UNIPROTKB|Q485Y9	436	CPS_1383 "Putative uncharacter	0.915	0.272	0.404	4.2e-19
TIGR_CMR|CPS_1383	436	CPS_1383 "conserved hypothetic	0.915	0.272	0.404	4.2e-19
UNIPROTKB|Q9KSY6	426	VC_1120 "Putative uncharacteri	0.938	0.286	0.395	1.8e-18
TIGR_CMR|VC_1120	426	VC_1120 "conserved hypothetica	0.938	0.286	0.395	1.8e-18

TAIR|locus:2088070 AT3G23530 [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 3.2e-46, P = 3.2e-46
 Identities = 94/131 (71%), Positives = 111/131 (84%)

Query:     1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA 59
             M+VAVIG GISGL SA+VLA  GV +VVLYEKE+SLGGHAKT+  DGVDLDLGF +FN  
Sbjct:     1 MKVAVIGSGISGLGSAYVLANQGVKEVVLYEKEESLGGHAKTVRFDGVDLDLGFMVFNRV 60

Query:    60 TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQML 119
             T PN MEFF++LGV+M+ SDMSF+VSLD G+G EWG+RNG S LFAQKKN+LNPYFWQM+
Sbjct:    61 TYPNMMEFFENLGVEMEVSDMSFAVSLDNGKGCEWGSRNGVSGLFAQKKNVLNPYFWQMI 120

Query:   120 WEINKFKDDAL 130
              EI +FK+D L
Sbjct:   121 REIVRFKEDVL 131

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISS

GO:0008825 "cyclopropane-fatty-acyl-phospholipid synthase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2088712 AT3G23510 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 8.8e-46, P = 8.8e-46
 Identities = 93/131 (70%), Positives = 111/131 (84%)

Query:     1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA 59
             M+VAVIG GISGL SA+VLA  GV +VVLYEKE+SLGGHAKT+  DGVDLDLGF +FN  
Sbjct:     1 MKVAVIGSGISGLGSAYVLANQGVKEVVLYEKEESLGGHAKTVRFDGVDLDLGFMVFNRV 60

Query:    60 TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQML 119
             T PN +EFF++LGV+M+ SDMSF+VSLD G+G EWG+RNG S LFAQKKN+LNPYFWQM+
Sbjct:    61 TYPNMIEFFENLGVEMEVSDMSFAVSLDNGKGCEWGSRNGVSGLFAQKKNVLNPYFWQMI 120

Query:   120 WEINKFKDDAL 130
              EI +FK+D L
Sbjct:   121 REIVRFKEDVL 131

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISS

GO:0008825 "cyclopropane-fatty-acyl-phospholipid synthase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q0C192 HNE_1797 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 255 (94.8 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 61/132 (46%), Positives = 82/132 (62%)

Query:     2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT--ITIDG--VDLDLGFTLFN 57
             ++A+IG GISGL +A+ L K   DV L+E++   GGHA T     DG    +DLGF ++N
Sbjct:     3 KIAIIGAGISGLGAAWAL-KDTADVTLFEQDKRAGGHANTHVFDYDGHPTAVDLGFIVYN 61

Query:    58 HATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQ 117
                 PN + FFD LGV+ ++SDMSF+VS D   G+EW +      LFAQK+NLLNP F +
Sbjct:    62 ARNYPNLIAFFDELGVETQASDMSFAVS-DPS-GWEWAST--LPGLFAQKRNLLNPDFHR 117

Query:   118 MLWEINKFKDDA 129
                 I KF + A
Sbjct:   118 FWRTILKFNNTA 129

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48MU4 PSPPH_1007 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 250 (93.1 bits), Expect = 5.4e-21, P = 5.4e-21
 Identities = 57/129 (44%), Positives = 81/129 (62%)

Query:     1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI--DG--VDLDLGFTLF 56
             M++AVIG GI+GL SA++L +A  +V ++E  D +GGH  T+ +  +G    +D GF +F
Sbjct:     1 MKIAVIGSGIAGLTSAYLLNRAH-EVTVFESSDWVGGHTHTVDVQVEGRAYAIDTGFIVF 59

Query:    57 NHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFW 116
             N  T PN +     LGV  K ++MSFSV  D   G E+   N  +SLFAQ+ NLL+P FW
Sbjct:    60 NDWTYPNFIRLLSQLGVGFKPAEMSFSVH-DPRTGVEYNGNN-LNSLFAQRSNLLSPRFW 117

Query:   117 QMLWEINKF 125
              ML +I +F
Sbjct:   118 GMLRDILRF 126

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74AM5 GSU2327 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 247 (92.0 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 58/133 (43%), Positives = 81/133 (60%)

Query:     1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI--TIDGVDL--DLGFTLF 56
             M +A+IGGGI+GLA+A +L      V L+E  D LGGH  T+  ++DG  L  D GF +F
Sbjct:     1 MNIAIIGGGIAGLATAHLLCDDH-RVTLFEANDYLGGHTNTVDVSLDGTTLAVDTGFIVF 59

Query:    57 NHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFW 116
             N  T PN +   + L V  + S MSFSV+ ++  G E+   N   +LFAQ++N LN  FW
Sbjct:    60 NERTYPNFIRLLERLNVASRPSVMSFSVTSERN-GLEYCATN-LDTLFAQRRNFLNRPFW 117

Query:   117 QMLWEINKFKDDA 129
             +ML EI +F  +A
Sbjct:   118 RMLREIVRFNREA 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2327 GSU_2327 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 247 (92.0 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 58/133 (43%), Positives = 81/133 (60%)

Query:     1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI--TIDGVDL--DLGFTLF 56
             M +A+IGGGI+GLA+A +L      V L+E  D LGGH  T+  ++DG  L  D GF +F
Sbjct:     1 MNIAIIGGGIAGLATAHLLCDDH-RVTLFEANDYLGGHTNTVDVSLDGTTLAVDTGFIVF 59

Query:    57 NHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFW 116
             N  T PN +   + L V  + S MSFSV+ ++  G E+   N   +LFAQ++N LN  FW
Sbjct:    60 NERTYPNFIRLLERLNVASRPSVMSFSVTSERN-GLEYCATN-LDTLFAQRRNFLNRPFW 117

Query:   117 QMLWEINKFKDDA 129
             +ML EI +F  +A
Sbjct:   118 RMLREIVRFNREA 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q485Y9 CPS_1383 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 234 (87.4 bits), Expect = 4.2e-19, P = 4.2e-19
 Identities = 51/126 (40%), Positives = 76/126 (60%)

Query:     4 AVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI----DGVDLDLGFTLFNHA 59
             A+IG GISGL +A++L+K    V ++EK DS+GGH  T+ I    D   +D GF +FN  
Sbjct:     5 AIIGSGISGLTAAYLLSKKH-KVTVFEKNDSVGGHTATVDIEKSGDKFAIDTGFIVFNDR 63

Query:    60 TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQML 119
             T PN +   D +G+    ++MSFSV  +   G E+   N   +LFAQ++N+  P FW ++
Sbjct:    64 TYPNFLALLDEIGIGKVPTEMSFSVH-NCQSGLEYNGHN-LDTLFAQRRNIFKPTFWLLV 121

Query:   120 WEINKF 125
              EI +F
Sbjct:   122 KEILRF 127

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1383 CPS_1383 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 234 (87.4 bits), Expect = 4.2e-19, P = 4.2e-19
 Identities = 51/126 (40%), Positives = 76/126 (60%)

Query:     4 AVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI----DGVDLDLGFTLFNHA 59
             A+IG GISGL +A++L+K    V ++EK DS+GGH  T+ I    D   +D GF +FN  
Sbjct:     5 AIIGSGISGLTAAYLLSKKH-KVTVFEKNDSVGGHTATVDIEKSGDKFAIDTGFIVFNDR 63

Query:    60 TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQML 119
             T PN +   D +G+    ++MSFSV  +   G E+   N   +LFAQ++N+  P FW ++
Sbjct:    64 TYPNFLALLDEIGIGKVPTEMSFSVH-NCQSGLEYNGHN-LDTLFAQRRNIFKPTFWLLV 121

Query:   120 WEINKF 125
              EI +F
Sbjct:   122 KEILRF 127

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KSY6 VC_1120 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 228 (85.3 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 51/129 (39%), Positives = 77/129 (59%)

Query:     1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--GVD--LDLGFTLF 56
             M++A+IG GISGL   + L +   D+ L+E  D +GGH  T+ ++  G    +D GF ++
Sbjct:     2 MKIAIIGSGISGLTCGYYLHRYH-DITLFEANDYIGGHTATVDVELAGKPYAVDTGFIVY 60

Query:    57 NHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFW 116
             N  T PN ++  D +GV  K + MSFSV  D   G E+      ++LFAQK+N LNP F+
Sbjct:    61 NDRTYPNFIKMMDEIGVQGKPTQMSFSVRND-ANGLEYNGHT-LTTLFAQKRNWLNPKFY 118

Query:   117 QMLWEINKF 125
             + + EI +F
Sbjct:   119 RFIAEILRF 127

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_1120 VC_1120 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 228 (85.3 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 51/129 (39%), Positives = 77/129 (59%)

Query:     1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--GVD--LDLGFTLF 56
             M++A+IG GISGL   + L +   D+ L+E  D +GGH  T+ ++  G    +D GF ++
Sbjct:     2 MKIAIIGSGISGLTCGYYLHRYH-DITLFEANDYIGGHTATVDVELAGKPYAVDTGFIVY 60

Query:    57 NHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFW 116
             N  T PN ++  D +GV  K + MSFSV  D   G E+      ++LFAQK+N LNP F+
Sbjct:    61 NDRTYPNFIKMMDEIGVQGKPTQMSFSVRND-ANGLEYNGHT-LTTLFAQKRNWLNPKFY 118

Query:   117 QMLWEINKF 125
             + + EI +F
Sbjct:   119 RFIAEILRF 127

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
COG2907	447	COG2907, COG2907, Predicted NAD/FAD-binding protei	4e-35
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	7e-20
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	6e-15
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	4e-14
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-13
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	1e-12
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	2e-12
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	7e-12
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	6e-11
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	6e-11
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	8e-11
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	1e-10
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	1e-10
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	2e-10
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-10
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	3e-10
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	6e-10
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	1e-09
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	3e-09
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	6e-09
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	8e-09
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	1e-08
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	1e-08
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-08
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	5e-08
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	6e-08
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	7e-08
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	8e-08
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	1e-07
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	1e-07
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	2e-07
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	4e-07
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	5e-07
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	5e-07
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	7e-07
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	8e-07
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	9e-07
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	1e-06
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	1e-06
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	1e-06
PRK05335	436	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransfe	3e-06
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	5e-06
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	6e-06
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	7e-06
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	8e-06
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	9e-06
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	1e-05
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	1e-05
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	1e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-05
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	2e-05
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	2e-05
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	2e-05
TIGR03997	645	TIGR03997, mycofact_OYE_2, mycofactocin system Fad	2e-05
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	2e-05
PRK00711	416	PRK00711, PRK00711, D-amino acid dehydrogenase sma	2e-05
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	3e-05
PRK12409	410	PRK12409, PRK12409, D-amino acid dehydrogenase sma	3e-05
PTZ00306	1167	PTZ00306, PTZ00306, NADH-dependent fumarate reduct	3e-05
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	4e-05
COG0771	448	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta	4e-05
PRK14106	450	PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	5e-05
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	5e-05
pfam01946	229	pfam01946, Thi4, Thi4 family	5e-05
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	7e-05
PLN00093	450	PLN00093, PLN00093, geranylgeranyl diphosphate red	1e-04
PLN02676	487	PLN02676, PLN02676, polyamine oxidase	1e-04
PRK12809	639	PRK12809, PRK12809, putative oxidoreductase Fe-S b	1e-04
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	1e-04
PRK12416	463	PRK12416, PRK12416, protoporphyrinogen oxidase; Pr	1e-04
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	1e-04
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	1e-04
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	2e-04
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	2e-04
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	2e-04
TIGR02023	388	TIGR02023, BchP-ChlP, geranylgeranyl reductase	2e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-04
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	2e-04
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	2e-04
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	3e-04
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	3e-04
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	3e-04
PRK08401	466	PRK08401, PRK08401, L-aspartate oxidase; Provision	3e-04
TIGR03026	409	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog	4e-04
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	4e-04
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	4e-04
COG1206	439	COG1206, Gid, NAD(FAD)-utilizing enzyme possibly i	4e-04
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	5e-04
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	5e-04
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	5e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	5e-04
PRK01438	480	PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl	5e-04
PRK10015	429	PRK10015, PRK10015, oxidoreductase; Provisional	6e-04
TIGR00137	433	TIGR00137, gid_trmFO, tRNA:m(5)U-54 methyltransfer	9e-04
PRK08773	392	PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methox	9e-04
PRK12779	944	PRK12779, PRK12779, putative bifunctional glutamat	0.001
TIGR02028	398	TIGR02028, ChlP, geranylgeranyl reductase	0.001
PRK00094	325	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp	0.001
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	0.001
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	0.001
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	0.001
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	0.001
PRK12775	1006	PRK12775, PRK12775, putative trifunctional 2-polyp	0.001
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	0.001
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	0.001
TIGR02360	390	TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-mon	0.001
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	0.001
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	0.001
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.002
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	0.002
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	0.002
TIGR01372	985	TIGR01372, soxA, sarcosine oxidase, alpha subunit	0.002
COG3075	421	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehy	0.002
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	0.002
pfam04820	457	pfam04820, Trp_halogenase, Tryptophan halogenase	0.002
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	0.002
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	0.002
COG4529	474	COG4529, COG4529, Uncharacterized protein conserve	0.002
PRK13800	897	PRK13800, PRK13800, putative oxidoreductase/HEAT r	0.003
PRK12839	572	PRK12839, PRK12839, hypothetical protein; Provisio	0.003
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	0.003
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	0.003
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	0.003
PRK06834	488	PRK06834, PRK06834, hypothetical protein; Provisio	0.004
COG0569	225	COG0569, TrkA, K+ transport systems, NAD-binding c	0.004
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	0.004
TIGR03996	633	TIGR03996, mycofact_OYE_1, mycofactocin system Fad	0.004

>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]

 Score =  125 bits (315), Expect = 4e-35
 Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 6/129 (4%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID----GVDLDLGFTLF 56
            ++AVIG GISGL++A++L++   DV L+E +  LGGHA T+  +    GV +D GF ++
Sbjct: 9   RKIAVIGSGISGLSAAWLLSRRH-DVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVY 67

Query: 57  NHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFW 116
           N  T PN    F ++GVD K+S MSFSVSLD G G E+    G + L AQK+NLL P F 
Sbjct: 68  NERTYPNLTRLFKTIGVDTKASFMSFSVSLDMG-GLEYSGLTGLAGLLAQKRNLLRPRFP 126

Query: 117 QMLWEINKF 125
            ML EI +F
Sbjct: 127 CMLAEILRF 135

Length = 447

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 76.7 bits (190), Expect = 7e-20
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 5  VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNT 64
          ++G G+SGL +A++LAK G DV++ EK D +GG+A +    G   D G  +F H + PN 
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERDPGYRHDYGAHIF-HTSYPNV 59

Query: 65 MEFFDSL 71
           E  D L
Sbjct: 60 RELLDEL 66

Length = 66

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 69.3 bits (170), Expect = 6e-15
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 1  MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH 58
          M++A+IGGGI+GL++A+ L KAG  V+V L+E +D +GG  +T+ IDG   + G   F  
Sbjct: 1  MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHF-L 59

Query: 59 ATSPNTMEFFDSLGVD 74
          A     ++    LG++
Sbjct: 60 ARKEEILDLIKELGLE 75

Length = 444

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG---FTLFN 57
            V VIG G++GLA+A +LA+AG+ V + EK D +GG A+T  +DG   D G   + + +
Sbjct: 4  YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPD 63

Query: 58 HATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFE 93
                 +   D+ G+D+   D ++ V L  G   +
Sbjct: 64 PGPLFRELGNLDADGLDLLPPDPAYRVFLPDGDAID 99

Length = 487

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          +A++GGGI+GLA+A+ LAK G +V ++E +D LGG A +    G+ ++     F H    
Sbjct: 2  IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIE----RFYHHIFK 57

Query: 63 N---TMEFFDSLG----VDMKSSDMSFSVSLDKGQGFEWGT 96
          +    +E  D LG    +  + +   + V    G+ +  GT
Sbjct: 58 SDEALLELLDELGLEDKLRWRETKTGYYV---DGKLYPLGT 95

Length = 434

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
            VIG G  GLA A  LA AG+ V + E+ D  GG A  +  DG   D G T+    T P
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVI---TMP 57

Query: 63 NTM-EFFDSLGVDMK 76
            + E F   G D+ 
Sbjct: 58 EALEELFALAGRDLA 72

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 10  ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFD 69
           ++GLA+A  L +AG DV + E  D +GG  +T+  DG  ++LG   F H   PN +    
Sbjct: 1   LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWF-HGAYPNLLNLLL 59

Query: 70  SLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKDDA 129
            LG+++      F         +  G              LL     ++   + +    A
Sbjct: 60  ELGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELELSLEEPIRRA 119

Query: 130 L 130
           L
Sbjct: 120 L 120

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 60.6 bits (148), Expect = 7e-12
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 1  MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH 58
           +VA+IGGGI+GL++A+ L K G   D+ L E  D LGG  +T+  DG  ++LG   F  
Sbjct: 1  KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESF-L 59

Query: 59 ATSPNTMEFFDSLG 72
          A  P+       LG
Sbjct: 60 ARKPSAPALVKELG 73

Length = 451

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 58.0 bits (140), Expect = 6e-11
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          M V +IGGGI GL++A+ LA+ G DV + E  ++ GG
Sbjct: 5  MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41

Length = 387

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 57.9 bits (140), Expect = 6e-11
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
            V VIGGG++G+ +A  LA  G  V L EKE S+GG 
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162

Length = 622

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 57.6 bits (140), Expect = 8e-11
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 12/83 (14%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG----FTLFN 57
           V +IG G +GL +A+ L K G  V + E +  +GG ++T+T  G   D+G    F+   
Sbjct: 6  SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS--- 62

Query: 58 HATSPNTMEFFDSLGVDMKSSDM 80
             SP  M+ ++ +   +   D 
Sbjct: 63 --KSPEVMDLWNEI---LPDDDF 80

Length = 479

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI-TIDGVDLDLGFTLFNHA 59
          M+VA+ G G++GLA+A+ LA AG DV LYE  D LGG   +    DG  ++ G  +F   
Sbjct: 1  MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVF-FG 59

Query: 60 TSPNTMEFFDSLG 72
             N +     L 
Sbjct: 60 CYYNLLTLLKELP 72

Length = 485

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
          V VIGGGI GL++A+ LA+ G+ V L E+ D L   A
Sbjct: 2  VVVIGGGIVGLSTAYELARRGLSVTLLERGD-LASGA 37

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 17/74 (22%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTITIDGVDLDLGFTLFNHA 59
          + VA++G G +GLA A  LA+AG+DV L E+    L    + I +               
Sbjct: 3  LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIAL--------------- 47

Query: 60 TSPNTMEFFDSLGV 73
           SPN +   + LG+
Sbjct: 48 -SPNALRALERLGL 60

Length = 387

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI 42
           VAVIG G +GLA+A+ LA+AG  V ++E+E++ GG  K I
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI 581

Length = 1019

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 18/35 (51%), Positives = 26/35 (74%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           VAV+G G +GLA+A  LA+AG  V ++E+ D +GG
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 55.2 bits (134), Expect = 6e-10
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           VAVIG G +GL +A  LA+ G DV ++E  D  GG
Sbjct: 143 VAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 2  QVAVIGGGISGLASAFVLAK----AGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFN 57
           V +IGGGISGL +A+ L K      V++ L E  D +GG  +T+  DG  ++ G   F 
Sbjct: 4  HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSF- 62

Query: 58 HATSPNTMEFFDSLGVD 74
               +  +    LG++
Sbjct: 63 LERKKSAPDLVKDLGLE 79

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
            V ++G G +G ++A  LAKAG+DV++ EK    G  
Sbjct: 4  YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41

Length = 396

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V ++G G++GL++A+ L KAG  V + E  D +GG + T    G   DLG    N     
Sbjct: 10 VIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDA 69

Query: 63 NTMEFFDSLGV 73
            + +    GV
Sbjct: 70 -LLAYAKEFGV 79

Length = 450

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFN 57
          +A++G GI+GLA+A+ L +AG +V ++EK   +GG   T  +DG   D G   F 
Sbjct: 4  IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFK 58

Length = 331

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 20/88 (22%)

Query: 3  VAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
          VAV+G G+SGLA+A+ LA   GV+V++ E  D +GG+  +++ DG   + G         
Sbjct: 15 VAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEG--------- 65

Query: 62 PNTMEFFDSLGVDMKSSDMSFSVSLDKG 89
          PN+ +           SD   + ++D G
Sbjct: 66 PNSFQ----------PSDPELTSAVDSG 83

Length = 496

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 24/53 (45%), Positives = 29/53 (54%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT 54
           V VIG GI+GL +A +LAK G  V L E+    GG A T    G   D+G T
Sbjct: 3  SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGAT 55

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           VAVIG G +GLA+A  L++AG DV ++E+    GG
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160

Length = 457

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 49.0 bits (118), Expect = 5e-08
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          VA++G G SGL +A+ LAKAG+ V ++E++ S GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
            A+IGGGI+G A A  LA+ G  V LYE +++    A
Sbjct: 263 AAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299

Length = 662

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          V VIGGGI+G+A+A  L  A   V L E  D +GG   T    G  +D+G
Sbjct: 3  VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMG 52

Length = 435

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 16/73 (21%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V ++GGG +GL  A +LA+AGV VVL E+  +     +                    +
Sbjct: 3  DVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRA----------------GGLN 46

Query: 62 PNTMEFFDSLGVD 74
            TME     G++
Sbjct: 47 QRTMELLRQAGLE 59

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI 42
           VAVIG G +GL++ + LA+AG  V ++EK++  GG  K I
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI 579

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
            V ++G G SGL +A+ LAKAG+ V ++E++ S GG
Sbjct: 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67

Length = 262

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
          V VIG G++GLA+A   A+AG+ V + EK    GG  
Sbjct: 2  VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGAT 38

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score = 47.1 bits (113), Expect = 4e-07
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 3  VAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGH 38
            +IGGGI GL++A  L +   G  + + EKE     H
Sbjct: 5  FVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARH 42

Length = 393

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           VAV+G G +GLA+A  L +AG  V ++E+ED  GG
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 16/71 (22%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V ++GGGI GLA+A  LA+ G+ V L E+   +G     I   G  + LG         P
Sbjct: 7  VLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG----EI---GAGIQLG---------P 50

Query: 63 NTMEFFDSLGV 73
          N     D+LGV
Sbjct: 51 NAFSALDALGV 61

Length = 396

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 17/35 (48%), Positives = 19/35 (54%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           V V+G G  GL +A   AK G  V L E  D LGG
Sbjct: 139 VVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173

Length = 415

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGG 37
            VA+IG G SGLA+A+ L +AGV   V++EK D +GG
Sbjct: 9  TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46

Length = 443

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 46.0 bits (110), Expect = 9e-07
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 22/75 (29%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLD---LGFTLFN 57
              ++GGG +G+    +LA+AGVDV + EK      HA        D      G T+  
Sbjct: 7  TDCCIVGGGPAGMMLGLLLARAGVDVTVLEK------HA--------DFLRDFRGDTV-- 50

Query: 58 HATSPNTMEFFDSLG 72
              P+T+E  D LG
Sbjct: 51 ---HPSTLELMDELG 62

Length = 407

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           VAVIGGG +GL++A+ L + G  V ++E    LGG
Sbjct: 140 VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174

Length = 564

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYE 30
          M+V + GGGI GL  A  L + G++VV++E
Sbjct: 1  MKVLIAGGGIGGLTLALTLHQRGIEVVVFE 30

Length = 413

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           +VAVIG G +GLA A +LA+AGV VV++++   +GG
Sbjct: 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYE 30
            V VIG G++G  +A+ LAK GV V LYE
Sbjct: 3  KPVNVIGAGLAGSEAAWQLAKRGVPVELYE 32

Length = 436

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
            V VIG G +G  +A   A+ G+ V L EK + LGG
Sbjct: 5  YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG 41

Length = 454

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V VIG G  GL++A    K G+DVV+ EKE   GG
Sbjct: 12 VLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46

Length = 574

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
          V VIGGG +GL +A   A+AG+ V L  K     GH
Sbjct: 9  VVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44

Length = 562

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 16/99 (16%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH-AKTITIDGVDLDLGFT------- 54
           V +IGGG +GL +A   A+AG+ VVL  +    GG   KT  ++      GF        
Sbjct: 6   VIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENY---PGFPGGILGPE 62

Query: 55  ----LFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKG 89
               +   A      E  +     ++     F V  DKG
Sbjct: 63  LMEQMKEQAEKFGV-EIVEDEVEKVELEGGPFKVKTDKG 100

Length = 305

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 24/93 (25%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
          +V ++GGGI GL++A  L +AG+ V L E +           + G     G TL      
Sbjct: 6  KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW-------RVYGA----GITL-----Q 49

Query: 62 PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEW 94
           N +     LGV            L+ G GF+ 
Sbjct: 50 GNALRALRELGV--------LDECLEAGFGFDG 74

Length = 375

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           +VA+IG G +GLA A VLA+ GV V +Y++   +GG
Sbjct: 329 RVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364

Length = 654

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
            V +IGGG +GL +A   AKAG  V+L +K   LG
Sbjct: 4  FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39

Length = 408

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 31/99 (31%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V VIGGG +GL +A   AK G  V+L +K   LG   + I I G     G     ++  
Sbjct: 2  DVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLG---RKILISGG----GRCNVTNSVE 54

Query: 62 P------------------------NTMEFFDSLGVDMK 76
          P                        + + FF+ LGV +K
Sbjct: 55 PDEFLSRYPGNPHFLKSALSRFTPWDFIAFFEELGVPLK 93

Length = 405

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH----AKTITIDGVDLDLGFTLFN 57
            V +IGGG +GLA+A  LA+ G+ V L E+E     +     K + ++  +   G  L  
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAE---GLELAI 57

Query: 58  HATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFS 101
               P   E +   GV++        +   +          G  
Sbjct: 58  GLALPE--EVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGRE 99

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
          V VIGGGI+G   A   A  G+ V L EK D
Sbjct: 15 VIVIGGGITGAGIARDAAGRGLKVALVEKGD 45

Length = 532

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 3  VAVIGGGISGLASAFVLAKAGVD--VVLYEKEDSLGGH 38
          V +IGGGI G A+A+ L++   D  V L EKED +   
Sbjct: 6  VVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQE 43

Length = 429

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
          M++A+IG GI GL +A +L + G +V ++EK +S+
Sbjct: 1  MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35

Length = 373

>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI 42
           V V+GGG +GL +A   A+ G  V L+E+ED LGG  +  
Sbjct: 382 VLVVGGGPAGLEAAATAARRGHRVTLFEREDRLGGQVRLA 421

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           +VA++G G +GL++A+ LA  G +V +YE     GG
Sbjct: 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320

Length = 604

>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34
          M+V V+G G+ G+ SA+ LA+AG +V + +++  
Sbjct: 1  MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34

Length = 416

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
            V ++G G SGL +A+ LAK G+ V + E+  + GG
Sbjct: 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 12/30 (40%), Positives = 22/30 (73%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEK 31
           +AVIG GI+G+ +A+ LA+ G  V ++++
Sbjct: 3  HIAVIGAGITGVTTAYALAQRGYQVTVFDR 32

Length = 410

>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT 43
           +V V+GGG++G ++A   A  G  V+L EKE  LGG++   T
Sbjct: 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKAT 452

Length = 1167

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 16/72 (22%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V V+G G  GLA A  LA+ GV VVL + +D+L   ++ I                  + 
Sbjct: 26 VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICF----------------AK 69

Query: 63 NTMEFFDSLGVD 74
           ++E FD LG  
Sbjct: 70 RSLEIFDRLGCG 81

Length = 547

>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYE-KEDSLGGHAKTITIDGVDLDLGF 53
           +V V+G G SGLA+A  L K G +V + + +    G  A+ + ++G++++LG 
Sbjct: 8  KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS 61

Length = 448

>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYE--KEDSLGGHAKTITIDGVDLDLGF 53
          V V+G G+SGLA A  L K G  V+L +  +ED L    + +   G++L LG 
Sbjct: 8  VLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGE 60

Length = 450

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V V+GGG +G+A+A   A+ G  V+L E+   LGG
Sbjct: 2  VVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGG 36

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
            V ++G G SGL +A+ LAK G+ V + E+  S GG
Sbjct: 18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGG 54

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V VIG G +GL++A   A  G+ V++ EK+   GG
Sbjct: 15 VLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49

Length = 581

>gnl|CDD|177713 PLN00093, PLN00093, geranylgeranyl diphosphate reductase; Provisional

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEK 31
          ++VAVIGGG +G  +A  LAK G++  L E+
Sbjct: 40 LRVAVIGGGPAGACAAETLAKGGIETFLIER 70

Length = 450

>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 3  VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          V ++G G+SG+++A  L++AG+ D+++ E  D +GG  +     GV ++LG
Sbjct: 29 VIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELG 79

Length = 487

>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           +VAVIG G +GL  A +LA+AGV V ++++   +GG
Sbjct: 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG 347

Length = 639

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
          V V+G G +G ++A+ LA  G+ V+L EK+    
Sbjct: 3  VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 6/46 (13%)

Query: 3  VAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGGHAKTI 42
          V VIGGGI+GL++ F L K        ++++L EKE+ LGG   ++
Sbjct: 4  VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV 49

Length = 463

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 10/48 (20%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLY-EKED---------SLGGHAK 40
          V VIGGG +G  +A   A+ G  V+L     D         S+GG AK
Sbjct: 2  VIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIAK 49

Length = 391

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 16/72 (22%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V ++GGG  GLA A  L + GVD +L E++D    + K                 + TS
Sbjct: 9  PVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKA----------------NTTS 52

Query: 62 PNTMEFFDSLGV 73
            +ME F  LG+
Sbjct: 53 ARSMEHFRRLGI 64

Length = 545

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH-AKTITIDGVDLDLGFTLFNHAT 60
          +VA+ G G++GL+ A  LA AG   ++ E  D LGG  A     DG   + G  +F  A 
Sbjct: 1  RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAY 60

Query: 61 SPNTMEFFDSLGVD----MKSSDMSFSVSLDKGQ 90
           PN ++    L ++     KS  M F+     G 
Sbjct: 61 -PNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGT 93

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
          +VAVIG G  G   A V A+AG++VVL +
Sbjct: 1  KVAVIGAGTMGAGIAQVFARAGLEVVLVD 29

This family also includes lambda crystallin. Length = 180

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 20/73 (27%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL--GGHAKTITIDGVDLDLGFTLFNHAT 60
          V ++G G +GL  A  LA+ GV   L EK      G   K I                  
Sbjct: 6  VLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ----------------- 48

Query: 61 SPNTMEFFDSLGV 73
           P T E FD LGV
Sbjct: 49 -PRTQEVFDDLGV 60

Length = 502

>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34
          VAVIGGG SG  +A  LA+AG++ +L E+  S
Sbjct: 3  VAVIGGGPSGATAAETLARAGIETILLERALS 34

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 388

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V VIG G +G  +A   AK G  V L EK   LGG
Sbjct: 6  VIVIGAGPAGYVAARRAAKLGKKVALIEKGP-LGG 39

Length = 460

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYE 30
           +VAVIG G+ G   A V A AG DVVL +
Sbjct: 4  KKVAVIGAGVMGAGIAAVFALAGYDVVLKD 33

Length = 307

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 4  AVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
           +IGGG +GL +A   A+ G+ V+L EK   +G
Sbjct: 1  IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDG 46
            V ++G G  GL  A +L + GV V++ E+  +L    + + ID 
Sbjct: 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDD 56

Length = 500

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
            +VAVIG G +GL  A  LAK G DV ++E     GG
Sbjct: 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177

Length = 464

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVL 28
          V VIGGG++GL +A   A+AG  V L
Sbjct: 5  VLVIGGGLAGLTAALAAAEAGKRVAL 30

Length = 422

>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVL 28
          M+V ++GGG++GL +A  LAK G DV +
Sbjct: 2  MKVGIVGGGLAGLTAAISLAKKGFDVTI 29

Length = 466

>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVL----YEKEDSLGGHAKTITIDGVDLDLGFTLF 56
          M++AVIG G  GL  A +LA  G DV       EK D L  +     I    LD    L 
Sbjct: 1  MKIAVIGLGYVGLPLAALLADLGHDVTGVDIDQEKVDKL--NKGKSPIYEPGLD---ELL 55

Query: 57 NHATSPNTMEFFDSLGVDMKSSDMSF 82
            A     +         ++ +D+  
Sbjct: 56 AKALKAGRLRATTDYEEAIRDADVII 81

Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDL-DLGFTLFNHATS 61
          +AVIGGG +GLA A  LA+ G+ V L E    + G+  T  +   DL DLG         
Sbjct: 2  LAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNH-TYGVWDDDLSDLGLADCVEHVW 60

Query: 62 PNTMEFFD 69
          P+  E+  
Sbjct: 61 PDVYEYRF 68

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
            +VAVIG G +GL+ A  LAK G DV ++E    +GG
Sbjct: 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG 468

Length = 752

>gnl|CDD|224127 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYE 30
            + VIG G++G  +A+ +AK GV V+LYE
Sbjct: 4  QPINVIGAGLAGSEAAWQIAKRGVPVILYE 33

Length = 439

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKED--SLGGHA 39
          V V+G G++GL +A  LA AG  V+L ++E+  +LGG A
Sbjct: 7  VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45

Length = 549

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT-ITIDGVDLDLGFTLF 56
          +VA++G G++GL++A  L  AG +V +YE    +GG   + +  DG  +++G  +F
Sbjct: 1  KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVF 56

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH-AKTITIDGVDLDLGFTLFNHA 59
           ++V + G G++GL++A  LA AG   +L E  D LGG  A     DG   + G  +F  A
Sbjct: 94  LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA 153

Query: 60  TSPNTMEFFDSLGVD 74
             PN    F  LG++
Sbjct: 154 Y-PNVQNLFGELGIN 167

Length = 567

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEK 31
          QVA+IG G +GL    +L  AG+D V+ E+
Sbjct: 4  QVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33

Length = 392

>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKED--SLGGHAKTITIDGVDLDLG 52
          +V V G G+SG A+A  L + G  V + +  D       A  +   G  + LG
Sbjct: 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLG 70

Length = 480

>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 15/32 (46%), Positives = 25/32 (78%)

Query: 5  VIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
          V+G G++G  +A V+A+AG+DV++ E+ DS G
Sbjct: 10 VVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41

Length = 429

>gnl|CDD|129243 TIGR00137, gid_trmFO, tRNA:m(5)U-54 methyltransferase

 Score = 37.6 bits (87), Expect = 9e-04
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYE 30
          V VIGGG++G  +A+ LA+AGV V+LYE
Sbjct: 3  VHVIGGGLAGSEAAWQLAQAGVPVILYE 30

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO [Protein synthesis, tRNA and rRNA base modification]. Length = 433

>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
            ++GGG+ G A A  LA AG+ V L E  +     A     D  DL +      +A + 
Sbjct: 9  AVIVGGGVVGAACALALADAGLSVALVEGREPPRWQA-----DQPDLRV------YAFAA 57

Query: 63 NTMEFFDSLGV 73
          +     D LGV
Sbjct: 58 DNAALLDRLGV 68

Length = 392

>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           +AV+G G SGL +A++LA  G  V ++E    LGG
Sbjct: 309 IAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG 343

Length = 944

>gnl|CDD|131083 TIGR02028, ChlP, geranylgeranyl reductase

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
          ++VAV+GGG +G ++A  LA AG+   L E++
Sbjct: 1  LRVAVVGGGPAGASAAETLASAGIQTFLLERK 32

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 398

>gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

 Score = 37.0 bits (87), Expect = 0.001
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLY 29
          M++AV+G G  G A A VLA+ G DV L+
Sbjct: 2  MKIAVLGAGSWGTALAIVLARNGHDVTLW 30

Length = 325

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          QV V+G G +G ++AF  A  G++ V  E+  +LGG
Sbjct: 6  QVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG 41

Length = 471

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           ++ VIGGG +G  +A   A+ G +V L ++ D LGG
Sbjct: 1  SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGG 36

Length = 458

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           VA+IG G +GL +A+ L + G DV +++  +  GG
Sbjct: 196 VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230

Length = 652

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
          V V+GGG  GL  A  LAK G  V + E+ D L
Sbjct: 2  VVVVGGGYIGLEFASALAKLGSKVTVVERRDRL 34

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           +VA+ G G +GLA+A  L K GVDV +YE    +GG
Sbjct: 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG 467

Length = 1006

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYE 30
            VA+IG G+ G A A V A+AG +V L++
Sbjct: 3  GSVAIIGAGLIGRAWAIVFARAGHEVRLWD 32

Length = 308

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          VAVIG G +GL +A  L + G  VV++E+E  +GG
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47

Length = 461

>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
          QVA+IG G SGL    +L KAG+D V+ E++ 
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway [Energy metabolism, Other]. Length = 390

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVL 28
          +AVIGGG +GLA+A  LA+AG  V L
Sbjct: 10 IAVIGGGPAGLAAAIALARAGASVAL 35

Length = 388

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
          V +IG G +GL+ ++ L +AG+D V+ EK 
Sbjct: 3  VVIIGAGQAGLSVSYYLKQAGIDHVVLEKH 32

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
           + ++GGG  GL  A V A  G  V + E+ D +
Sbjct: 176 LVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208

Length = 454

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
           V V+GGG+ G + A  LA++G+ V L  
Sbjct: 7  DVVVVGGGLVGASLALALAQSGLRVALLA 35

Length = 388

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 16/76 (21%)

Query: 5  VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNT 64
          + G G++GL++A  LA  G  V + EK       A+ ++  G  L L         +PN 
Sbjct: 7  IAGAGVAGLSAALELAARGWAVTIIEK-------AQELSEVGAGLQL---------APNA 50

Query: 65 MEFFDSLGVDMKSSDM 80
          M   + LGV  + S  
Sbjct: 51 MRHLERLGVADRLSGT 66

Length = 400

>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG--HAKTITIDGVD 48
           V V+G G +GLA+A   A+AG  V+L +++   GG   ++  TIDG  
Sbjct: 166 VLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKP 213

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 985

>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVL 28
          VA+IGGG++GL     L +AG    +
Sbjct: 5  VAIIGGGLAGLTCGLALQQAGKRCAI 30

Length = 421

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          +VAVIG G+SGL+S     + G++   +E+ D +GG
Sbjct: 3  KVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGG 38

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 20/75 (26%)

Query: 3  VAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA 59
          + ++GGG +G  +A  LA+A   G+DV L E E         I   GV           A
Sbjct: 2  IVIVGGGTAGWMAAAALARALKGGLDVTLVESE--------EIGTVGV---------GEA 44

Query: 60 TSPNTMEFFDSLGVD 74
          T P+   F   LG+D
Sbjct: 45 TIPSIRTFNRMLGID 59

Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent. Length = 457

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           +VAVIG G +GLA A  LAKAG  V ++E     GG
Sbjct: 135 KVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG 170

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          VA+IG G +GLA+A  LA  G +V +Y+K    GG
Sbjct: 21 VAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG 55

Length = 352

>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 1  MQVAVIGGGISGLASAFVLAK---AGVDVVLYEKEDSLGG 37
           +VA+IGGG SG+  A  L K       + ++E   + G 
Sbjct: 2  FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41

Length = 474

>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing protein; Provisional

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD 48
          V VIGGG +G  +A   A+ G +V+L EK       A  + +DGV+
Sbjct: 16 VLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVN 61

Length = 897

>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V V+G G  GL++A   A  G  V++ EK  + GG
Sbjct: 11 VVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45

Length = 572

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 5  VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG---HAKTI 42
          VIG G +G  +A   AK G  V + E+  ++GG   H  TI
Sbjct: 10 VIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTI 50

Length = 461

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
          +V V+G G  G   A V A+AGVDV+++E
Sbjct: 7  RVGVVGAGQMGAGIAEVCARAGVDVLVFE 35

Length = 286

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V VIG G +G+++A   A AG+ V+L E+ + +GG
Sbjct: 19 VIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53

Length = 578

>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS--------LGGHAKTITI 44
           V + GGG +GL  A  LA AGVDV + E+  +         G HA+T+ +
Sbjct: 5  AVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEV 55

Length = 488

>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS---------LGGHAKTITIDGVDLD 50
          M++ +IG G  G + A  L++ G +VVL ++++          L  H   +  D  D D
Sbjct: 1  MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHV--VIGDATDED 57

Length = 225

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 4  AVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGH 38
           V+G G +G+A A  L   G   V++ ++    GGH
Sbjct: 1  LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGH 36

Length = 202

>gnl|CDD|188511 TIGR03996, mycofact_OYE_1, mycofactocin system FadH/OYE family oxidoreductase 1

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
           V V+GGG +GL +A VLA  G  V L E+   LGG  + 
Sbjct: 375 VLVVGGGPAGLEAARVLAARGHRVTLAERSAHLGGMLRI 413

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp. The function of this oxidoreductase is unknown. Length = 633

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.87
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.77
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.69
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.68
PLN02268	435	probable polyamine oxidase	99.68
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.67
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.66
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.65
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.65
PRK07233	434	hypothetical protein; Provisional	99.63
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.63
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.63
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.62
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.62
PLN02568	539	polyamine oxidase	99.59
PRK07208	479	hypothetical protein; Provisional	99.59
PLN02576	496	protoporphyrinogen oxidase	99.58
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.56
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.53
COG3349	485	Uncharacterized conserved protein [Function unknow	99.52
PLN02676	487	polyamine oxidase	99.51
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.5
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.5
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.5
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.49
PLN02529	738	lysine-specific histone demethylase 1	99.49
PLN02612	567	phytoene desaturase	99.47
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.45
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.45
PLN02487	569	zeta-carotene desaturase	99.42
PLN03000	881	amine oxidase	99.41
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.38
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.36
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.35
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.35
COG2081	408	Predicted flavoproteins [General function predicti	99.34
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.34
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.33
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.31
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.3
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.29
PTZ00058	561	glutathione reductase; Provisional	99.29
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.28
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.27
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.27
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.27
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.27
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.25
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.24
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.24
PRK06116	450	glutathione reductase; Validated	99.24
PRK08244	493	hypothetical protein; Provisional	99.23
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.23
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.23
PRK06184	502	hypothetical protein; Provisional	99.22
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.22
TIGR02053	463	MerA mercuric reductase. This model represents the	99.22
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.22
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.22
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.2
PRK06370	463	mercuric reductase; Validated	99.2
PLN02546	558	glutathione reductase	99.2
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.2
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.19
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.19
PRK10157	428	putative oxidoreductase FixC; Provisional	99.19
PRK06753	373	hypothetical protein; Provisional	99.19
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.18
PRK08163	396	salicylate hydroxylase; Provisional	99.18
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.18
PRK10015	429	oxidoreductase; Provisional	99.18
PRK08013	400	oxidoreductase; Provisional	99.18
PRK06126	545	hypothetical protein; Provisional	99.17
PRK13748	561	putative mercuric reductase; Provisional	99.17
PRK14694	468	putative mercuric reductase; Provisional	99.17
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.17
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.16
PTZ00052	499	thioredoxin reductase; Provisional	99.16
PRK07538	413	hypothetical protein; Provisional	99.16
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.16
PRK07045	388	putative monooxygenase; Reviewed	99.15
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.15
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.15
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.15
PLN02661	357	Putative thiazole synthesis	99.15
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.15
PRK07588	391	hypothetical protein; Provisional	99.14
PLN02976	1713	amine oxidase	99.14
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.14
PRK06185	407	hypothetical protein; Provisional	99.14
PRK06847	375	hypothetical protein; Provisional	99.14
PLN02507	499	glutathione reductase	99.14
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.14
PRK05868	372	hypothetical protein; Validated	99.13
PRK07236	386	hypothetical protein; Provisional	99.13
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.13
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.13
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.13
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.13
PRK07190	487	hypothetical protein; Provisional	99.13
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.13
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.12
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.12
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.12
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.12
PLN02985	514	squalene monooxygenase	99.12
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.12
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.11
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.11
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.1
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.1
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.1
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.1
PRK14727	479	putative mercuric reductase; Provisional	99.1
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.09
PRK06475	400	salicylate hydroxylase; Provisional	99.09
PRK11445	351	putative oxidoreductase; Provisional	99.09
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.09
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.09
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.08
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.08
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.08
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.08
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.08
PRK08294	634	phenol 2-monooxygenase; Provisional	99.08
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.08
PRK06834	488	hypothetical protein; Provisional	99.07
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.07
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.06
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.06
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.06
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.06
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.05
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.04
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.04
PTZ00367	567	squalene epoxidase; Provisional	99.04
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.04
PRK09126	392	hypothetical protein; Provisional	99.04
PRK07121	492	hypothetical protein; Validated	99.03
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.03
PRK07846	451	mycothione reductase; Reviewed	99.03
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.03
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.03
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.03
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.02
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.02
PRK08274	466	tricarballylate dehydrogenase; Validated	99.02
PRK12831	464	putative oxidoreductase; Provisional	99.01
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.01
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.0
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.99
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.99
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.99
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.98
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.98
PLN02463	447	lycopene beta cyclase	98.98
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.97
PLN02852	491	ferredoxin-NADP+ reductase	98.97
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.97
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.96
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.96
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.96
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.96
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.96
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.94
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.93
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.93
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.93
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.92
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.92
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.92
PRK05257	494	malate:quinone oxidoreductase; Validated	98.92
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.91
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.91
PRK10262	321	thioredoxin reductase; Provisional	98.91
PRK07804	541	L-aspartate oxidase; Provisional	98.9
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.9
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.9
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.9
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.9
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.89
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.89
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.89
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.89
PRK06996	398	hypothetical protein; Provisional	98.89
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.88
COG0579	429	Predicted dehydrogenase [General function predicti	98.88
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.88
PLN02697	529	lycopene epsilon cyclase	98.88
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.88
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.87
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.87
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.87
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.87
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.87
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.87
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.86
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.86
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PTZ00188	506	adrenodoxin reductase; Provisional	98.85
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.85
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.85
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.84
PRK12839	572	hypothetical protein; Provisional	98.84
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.84
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.83
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.82
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.82
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.82
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.81
PRK08401	466	L-aspartate oxidase; Provisional	98.81
PRK07395	553	L-aspartate oxidase; Provisional	98.81
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
PLN02815	594	L-aspartate oxidase	98.8
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.8
PRK06175	433	L-aspartate oxidase; Provisional	98.8
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.79
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.79
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.78
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.78
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.78
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.78
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.76
PRK08275	554	putative oxidoreductase; Provisional	98.76
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.76
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.75
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.75
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.74
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.74
PRK08071	510	L-aspartate oxidase; Provisional	98.74
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.73
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.73
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.73
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.72
PRK09077	536	L-aspartate oxidase; Provisional	98.71
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.71
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.71
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.71
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.68
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.67
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.65
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	98.64
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.63
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.63
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.61
PRK13984	604	putative oxidoreductase; Provisional	98.61
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.61
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.6
PRK02106	560	choline dehydrogenase; Validated	98.6
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.59
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.55
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.55
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.55
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.54
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.53
PRK09897	534	hypothetical protein; Provisional	98.52
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.51
PRK07512	513	L-aspartate oxidase; Provisional	98.51
KOG2853	509	consensus Possible oxidoreductase [General functio	98.5
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.49
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.46
COG3573	552	Predicted oxidoreductase [General function predict	98.41
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.4
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.38
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.37
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.36
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	98.33
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	98.33
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.31
PLN02785	587	Protein HOTHEAD	98.31
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.29
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.23
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.21
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.2
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.18
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.16
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.13
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.12
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.09
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	98.09
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.04
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	98.03
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.0
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.99
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.91
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.84
KOG2852	380	consensus Possible oxidoreductase [General functio	97.82
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.81
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.74
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.72
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.69
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.69
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.69
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.67
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.65
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	97.64
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.62
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.61
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.58
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.58
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.57
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.55
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.55
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.51
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.51
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.5
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.49
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.48
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.47
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.42
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.42
TIGR02053	463	MerA mercuric reductase. This model represents the	97.4
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.4
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.39
PRK07846	451	mycothione reductase; Reviewed	97.39
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.36
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.35
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.33
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.33
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.32
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.32
PRK06370	463	mercuric reductase; Validated	97.32
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.32
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.32
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.31
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.3
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.3
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	97.27
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.26
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.25
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.25
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.24
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.24
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.24
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.24
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.23
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.22
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.22
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.21
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.21
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.19
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.19
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.17
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.15
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.15
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.14
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.14
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.11
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.09
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.07
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.05
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.05
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.03
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.03
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.02
PRK04148	134	hypothetical protein; Provisional	97.02
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.02
PTZ00058	561	glutathione reductase; Provisional	97.0
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.99
PRK06116	450	glutathione reductase; Validated	96.99
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.98
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.98
PRK14694	468	putative mercuric reductase; Provisional	96.96
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.96
PLN02507	499	glutathione reductase	96.96
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.96
COG4716	587	Myosin-crossreactive antigen [Function unknown]	96.96
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.95
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.94
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.94
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.93
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.92
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.92
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.9
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.9
PRK13748	561	putative mercuric reductase; Provisional	96.89
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.89
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.89
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.88
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.88
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.87
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.86
PLN02546	558	glutathione reductase	96.85
PTZ00052	499	thioredoxin reductase; Provisional	96.85
PRK07417	279	arogenate dehydrogenase; Reviewed	96.85
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.84
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.84
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.83
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.83
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.82
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.82
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.81
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.81
PRK10262	321	thioredoxin reductase; Provisional	96.8
PRK12831	464	putative oxidoreductase; Provisional	96.79
PRK14727	479	putative mercuric reductase; Provisional	96.78
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.77
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.77
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.76
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.73
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.72
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.72
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.72
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.7
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.69
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.68
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.68
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.68
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.67
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.67
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.63
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.63
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.63
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.63
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.63
PRK09496	453	trkA potassium transporter peripheral membrane com	96.61
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.61
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.61
PRK06223	307	malate dehydrogenase; Reviewed	96.61
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.6
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.59
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.59
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.59
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.59
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.58
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.58
PRK08328	231	hypothetical protein; Provisional	96.56
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.55
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.55
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.55
PLN02494	477	adenosylhomocysteinase	96.53
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.53
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.52
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.52
PRK10669	558	putative cation:proton antiport protein; Provision	96.51
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.51
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.48
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.45
KOG2755	334	consensus Oxidoreductase [General function predict	96.44
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.43
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.43
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.42
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.42
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.42
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.42
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.41
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.39
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.36
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.36
PRK08223	287	hypothetical protein; Validated	96.33
PTZ00117	319	malate dehydrogenase; Provisional	96.32
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.31
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.29
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.29
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.29
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.28
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.28
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.27
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.27
PRK09496	453	trkA potassium transporter peripheral membrane com	96.27
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.26
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.25
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.23
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.23
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	96.22
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.22
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.22
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.2
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.18
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.17
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.17
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.17
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.16
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.15
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.14
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.14
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.11
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.1
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.09
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.09
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.08
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.06
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.04
PRK06153	393	hypothetical protein; Provisional	96.01
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.01
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.01
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.0
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.0
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.0
PRK12480	330	D-lactate dehydrogenase; Provisional	95.98
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.97
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.96
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	95.95
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.94
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.94
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.93
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	95.92

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.87  E-value=2.3e-21  Score=125.30  Aligned_cols=125  Identities=49%  Similarity=0.764  Sum_probs=113.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc----cCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI----DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .+|+|||+|++||+||..|++. .+|++||.+...||++.|...    +|..++.|..++++..+++..++++.+|.+.+
T Consensus         9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~   87 (447)
T COG2907           9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK   87 (447)
T ss_pred             cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc
Confidence            3799999999999999999876 899999999999999999953    56789999999999899999999999999999


Q ss_pred             eccceeeEEccCCCeeeeCCCCCcchhhhccccccChhHHHHHHHHHhhhc
Q 037740           77 SSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEINKFKD  127 (130)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (130)
                      ...+.|++..+. ..+.|+.--+...++.+.....+|.|++|++++++|.+
T Consensus        88 as~Msf~v~~d~-gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r  137 (447)
T COG2907          88 ASFMSFSVSLDM-GGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYR  137 (447)
T ss_pred             ccceeEEEEecC-CceeeccCCCccchhhccccccchhHHHHHHHHHHHhh
Confidence            988999988776 55788887778889999999999999999999999988

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.77  E-value=1.6e-18  Score=89.42  Aligned_cols=67  Identities=46%  Similarity=0.780  Sum_probs=58.3

Q ss_pred             EEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCC-CChhHHHHHHHc
Q 037740            5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA-TSPNTMEFFDSL   71 (130)
Q Consensus         5 IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~   71 (130)
                      |||+|++||++|+.|++.|++|+|+|+++.+||++++...++..++.|++.+... ...+..++++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L   68 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL   68 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence            8999999999999999999999999999999999999999999999999888763 467777777754

...

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.69  E-value=1.6e-16  Score=109.91  Aligned_cols=69  Identities=41%  Similarity=0.718  Sum_probs=59.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLG   72 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g   72 (130)
                      +||+|||||+.||+||..|+++|++|+|+||+..+||++++...+|+.++.|.+++......   .+++.++
T Consensus         4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~---~~~~~l~   72 (487)
T COG1233           4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG---PLFRELG   72 (487)
T ss_pred             ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH---HHHHHhc
Confidence            69999999999999999999999999999999999999999999999999998776543232   3444444

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=2.9e-16  Score=108.24  Aligned_cols=79  Identities=30%  Similarity=0.499  Sum_probs=70.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcc-cccccccccCCCChhHHHHHHHcCCCceecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLGFTLFNHATSPNTMEFFDSLGVDMKSSD   79 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~   79 (130)
                      ++|+|||||++||+||..|.+.|++|+|+|..+++||+..+....+.. ++.|++++.+.....+.-+.+++|++.....
T Consensus        16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~~~~   95 (501)
T KOG0029|consen   16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELYKVR   95 (501)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccceec
Confidence            479999999999999999999999999999999999999999997665 9999999998766667778899998776543

>PLN02268 probable polyamine oxidase

Probab=99.68  E-value=3.4e-16  Score=107.05  Aligned_cols=77  Identities=31%  Similarity=0.475  Sum_probs=67.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCC-CChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA-TSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~   77 (130)
                      .+|+|||||++||+||+.|.+.|++|+|+|+++++||++.+....|+.+|.|+.+++.. ....+.++++++|++...
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~   78 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYR   78 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEe
Confidence            47999999999999999999999999999999999999999887788899999988753 233477899999986543

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.67  E-value=3.6e-16  Score=107.63  Aligned_cols=75  Identities=33%  Similarity=0.574  Sum_probs=68.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .||+|||||++||+||+.|+++    |++|+|+|+++.+||++++...+|+.+|.|.+++... ..++.++++++|+...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~-~~~~~~l~~~lgl~~~   81 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLER-KKSAPDLVKDLGLEHV   81 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccC-ChHHHHHHHHcCCCcc
Confidence            4899999999999999999998    9999999999999999999999899999999998864 5668899999998654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR02730 carot_isom carotene isomerase

Probab=99.66  E-value=1.6e-15  Score=105.32  Aligned_cols=74  Identities=28%  Similarity=0.409  Sum_probs=61.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCC---Chh-HHHHHHHcCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT---SPN-TMEFFDSLGVD   74 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~~~~g~~   74 (130)
                      |||+|||+|++||++|..|+++|++|+|+||++.+||+++++..+|+.++.|.+.+....   ..+ ..+.++.++..
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRK   78 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCc
Confidence            799999999999999999999999999999999999999999999999999998765321   222 33455666543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.65  E-value=1.4e-15  Score=105.80  Aligned_cols=70  Identities=39%  Similarity=0.557  Sum_probs=61.0

Q ss_pred             EEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVD   74 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~   74 (130)
                      |+|||||++||+||..|+++|++|+|+|+++.+||+++++..+|+.++.|.+++..  .....++++.+|++
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~--~~~~~~l~~~lg~~   70 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM--PEALEELFALAGRD   70 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc--ccHHHHHHHHcCCC
Confidence            68999999999999999999999999999999999999999999999999988753  23344567777753

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.65  E-value=4.6e-16  Score=106.69  Aligned_cols=75  Identities=39%  Similarity=0.698  Sum_probs=66.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .+|+|||||++||+||+.|++.|  ++|+|+|+++.+||++.+...+|..+|.|++.+... ..++.++++++|+...
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~   77 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLAR-KPSAPALVKELGLEDE   77 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCC-cHHHHHHHHHcCCccc
Confidence            47999999999999999999987  899999999999999999999999999999876643 4568899999998643

>PRK07233 hypothetical protein; Provisional

Probab=99.63  E-value=1.3e-15  Score=104.00  Aligned_cols=74  Identities=35%  Similarity=0.692  Sum_probs=66.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +|+|||||++||+||+.|++.|++|+|+|+++.+||++.+...+|+.++.|.+.+.. ...++.++++++|+...
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~-~~~~~~~l~~~lg~~~~   74 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK-SDEALLELLDELGLEDK   74 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc-ccHHHHHHHHHcCCCCc
Confidence            689999999999999999999999999999999999999999988889998887754 35778899999997644

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.63  E-value=1.3e-15  Score=105.03  Aligned_cols=75  Identities=29%  Similarity=0.526  Sum_probs=66.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            2 QVAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~------g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      +|+|||||++||+||+.|++.      |.+|+|+|+++++||+++|....|+.+|.|++++... ..++.++++++|++.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~-~~~~~~l~~~lgl~~   81 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVAR-NEHVMPLVKDLNLEE   81 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcC-CHHHHHHHHHcCCcc
Confidence            699999999999999999986      3799999999999999999999889999999888653 567889999999865


Q ss_pred             ee
Q 037740           76 KS   77 (130)
Q Consensus        76 ~~   77 (130)
                      ..
T Consensus        82 ~~   83 (463)
T PRK12416         82 EM   83 (463)
T ss_pred             ce
Confidence            43

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.63  E-value=1.6e-15  Score=102.85  Aligned_cols=77  Identities=39%  Similarity=0.711  Sum_probs=70.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSS   78 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~   78 (130)
                      ..++|||||++||+||+.|++.+  .+++|||+++.+||..+|+..+|+.++.|.+.+... ..+++++++++|++....
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-~~~~l~li~eLGled~l~   79 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-KEEILDLIKELGLEDKLL   79 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-hHHHHHHHHHhCcHHhhc
Confidence            36899999999999999999998  899999999999999999999999999999888765 488899999999977654

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.62  E-value=4.1e-15  Score=98.88  Aligned_cols=125  Identities=26%  Similarity=0.401  Sum_probs=91.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcE--EEEecCCCCCCCeeeecc-cCcccccccccccCCCC--hhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDV--VLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATS--PNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v--~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~--~~~~~~~~~~g~~~   75 (130)
                      .+|+|+|||++||++|++|++.+.++  +++|..+++||+.++... .++.++-|...+.++..  .+++.+++++|++.
T Consensus        12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~   91 (491)
T KOG1276|consen   12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLED   91 (491)
T ss_pred             ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccc
Confidence            37999999999999999999997654  569999999999999333 56889999999988655  46788999999987


Q ss_pred             eeccceeeEEccCCCeeeeCC-----CCCcch-hhhccccccChhHHHHHHHHHhh
Q 037740           76 KSSDMSFSVSLDKGQGFEWGT-----RNGFSS-LFAQKKNLLNPYFWQMLWEINKF  125 (130)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  125 (130)
                      +...++.......++...+..     ++.+.. ++....+...|.++.|+.++++-
T Consensus        92 e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~  147 (491)
T KOG1276|consen   92 ELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRK  147 (491)
T ss_pred             eeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccc
Confidence            766555443333333333322     233333 44555677778888888888765

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.62  E-value=1.9e-15  Score=104.88  Aligned_cols=75  Identities=36%  Similarity=0.528  Sum_probs=64.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCC-hhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS-PNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~g~~~   75 (130)
                      .||+|||+|++||+||..|+++|++|+|+|+++.+||+++++..+|+.++.|.+++..... .....+++++|+..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~   77 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPL   77 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCC
Confidence            3899999999999999999999999999999999999999999999999999988764222 22345678888753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02568 polyamine oxidase

Probab=99.59  E-value=7.5e-15  Score=102.54  Aligned_cols=75  Identities=21%  Similarity=0.386  Sum_probs=67.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-----CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-----VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-----~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      .||+|||+|++||+||..|++.|     ++|+|+|+++.+||++.+....+..++.|++++.+.....+.++++++|+..
T Consensus         6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~   85 (539)
T PLN02568          6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLE   85 (539)
T ss_pred             CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCCcc
Confidence            47999999999999999999887     8999999999999999999998899999999998766666778999999744

>PRK07208 hypothetical protein; Provisional

Probab=99.59  E-value=7.7e-15  Score=101.54  Aligned_cols=72  Identities=32%  Similarity=0.566  Sum_probs=65.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGV   73 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~   73 (130)
                      .||+|||||++||+||+.|+++|++|+|+|+.+.+||++.+....++.++.|.+++.. ...+..+++++++.
T Consensus         5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~-~~~~~~~l~~~l~~   76 (479)
T PRK07208          5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS-KSPEVMDLWNEILP   76 (479)
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc-CCHHHHHHHHHhcC
Confidence            4899999999999999999999999999999999999999998888899999987764 36778899999985

>PLN02576 protoporphyrinogen oxidase

Probab=99.58  E-value=8.6e-15  Score=101.68  Aligned_cols=73  Identities=37%  Similarity=0.620  Sum_probs=62.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      +||+|||||++||+||+.|++. |++|+|+|+.+.+||++.+...+|+.++.|.+++... ......+++. |+..
T Consensus        13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~-~~~~~~l~~~-gl~~   86 (496)
T PLN02576         13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPS-DPELTSAVDS-GLRD   86 (496)
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccC-cHHHHHHHHc-CChh
Confidence            5899999999999999999999 9999999999999999999999999999999888742 3444455554 6643

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.56  E-value=2.1e-14  Score=98.85  Aligned_cols=74  Identities=32%  Similarity=0.557  Sum_probs=64.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec-ccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +|+|||+|++||+||+.|+++|++|+|+|+.+.+||++.++. .++..++.|.+++... ++++.++++++|+...
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA-YPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccC-CchHHHHHHHcCCccc
Confidence            589999999999999999999999999999999999998874 4678889999887743 5678899999998643

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.53  E-value=6.9e-14  Score=88.43  Aligned_cols=74  Identities=31%  Similarity=0.530  Sum_probs=61.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHH---HHHHcCCCce
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTME---FFDSLGVDMK   76 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~g~~~~   76 (130)
                      +|+|||+|++|++||+.|+..|.+|+||||..-+||+..|...++..++.|+..+... ..-+.+   .+.+-|+...
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~-~~~F~~~Ve~~~~~glV~~   79 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPR-DELFLRAVEALRDDGLVDV   79 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCC-chHHHHHHHHHHhCCceee
Confidence            6999999999999999999999999999999999999999999888899999988763 233444   4444455443

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=3.3e-14  Score=96.69  Aligned_cols=75  Identities=37%  Similarity=0.641  Sum_probs=66.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .+|+|+|||+|||+||++|+++|++|+|+|+.+.+||-+.++.. +|...|.|.+.+.+ .+.++++++++++.+..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~-~Y~n~~~ll~~~~~~~~   76 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFG-CYYNLLTLLKELPIEDR   76 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEech-hHHHHHHHhhhCCchhe
Confidence            47999999999999999999999999999999999998887776 67889999999885 47788899998887643

>PLN02676 polyamine oxidase

Probab=99.51  E-value=8.9e-14  Score=96.36  Aligned_cols=77  Identities=27%  Similarity=0.516  Sum_probs=67.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCeeeecccCcccccccccccC---CCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH---ATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||+|++||+||..|++.|. +|+|+|+.+.+||++.+....+..++.|++++..   .......++.+++|+...
T Consensus        27 ~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~  106 (487)
T PLN02676         27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLRTF  106 (487)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCcee
Confidence            589999999999999999999998 6999999999999999988888889999998864   345567788899998655


Q ss_pred             e
Q 037740           77 S   77 (130)
Q Consensus        77 ~   77 (130)
                      .
T Consensus       107 ~  107 (487)
T PLN02676        107 Y  107 (487)
T ss_pred             e
Confidence            4

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.50  E-value=1.4e-13  Score=99.27  Aligned_cols=79  Identities=28%  Similarity=0.432  Sum_probs=66.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCc----ccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGV----DLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .+|+|||+|++||+||+.|.+.|++|+|+|++..+||+..+....+.    .++.|+++++......+..+.+++|++..
T Consensus       239 ~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~  318 (808)
T PLN02328        239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLH  318 (808)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceE
Confidence            37999999999999999999999999999999999999999887543    57889999887654556678899998765


Q ss_pred             ecc
Q 037740           77 SSD   79 (130)
Q Consensus        77 ~~~   79 (130)
                      ..+
T Consensus       319 ~~~  321 (808)
T PLN02328        319 KVR  321 (808)
T ss_pred             ecC
Confidence            443

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1.1e-13  Score=85.05  Aligned_cols=67  Identities=36%  Similarity=0.601  Sum_probs=49.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCC-CChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA-TSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~   77 (130)
                      .||+|+|+||+||+||++|+++|++|+|||++-.+||..+          .|.+.++.. ...+...+++++|++.+.
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~ye~   98 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRYEE   98 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCccee
Confidence            4899999999999999999999999999999988887322          233333331 123344567777776654

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.50  E-value=1.2e-13  Score=95.44  Aligned_cols=74  Identities=28%  Similarity=0.586  Sum_probs=65.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec-ccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +|+|||+|++||++|+.|++.|++|+|+|+++.+||++.++. ..|+.++.|.+++... +.+..++++++|+...
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~-~~~~~~~~~~lg~~~~   75 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGC-YANLFRLMKKVGAEDN   75 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCc-hHHHHHHHHHcCCccc
Confidence            589999999999999999999999999999999999998874 5688899999988753 5778899999998654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.49  E-value=5.6e-14  Score=86.44  Aligned_cols=37  Identities=46%  Similarity=0.772  Sum_probs=31.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+||+||+||++|++.|++|+++|++..+||
T Consensus        18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG   54 (230)
T PF01946_consen   18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG   54 (230)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            5999999999999999999999999999999888887

>PLN02529 lysine-specific histone demethylase 1

Probab=99.49  E-value=2.2e-13  Score=97.64  Aligned_cols=78  Identities=26%  Similarity=0.391  Sum_probs=66.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc--C--cccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--G--VDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~--~--~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .||+|||+|++||+||..|++.|++|+|+|+.+.+||+..+...+  +  ..++.|+++++......+..+.+++|++..
T Consensus       161 ~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~  240 (738)
T PLN02529        161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLH  240 (738)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcc
Confidence            479999999999999999999999999999999999999998874  2  368999999987655556678889988665


Q ss_pred             ec
Q 037740           77 SS   78 (130)
Q Consensus        77 ~~   78 (130)
                      ..
T Consensus       241 ~~  242 (738)
T PLN02529        241 KV  242 (738)
T ss_pred             cc
Confidence            43

>PLN02612 phytoene desaturase

Probab=99.47  E-value=2.2e-13  Score=95.94  Aligned_cols=75  Identities=35%  Similarity=0.593  Sum_probs=66.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      ++|+|||+|++||++|++|.+.|++|+|+|+++.+||+..++.. +|+.+|.|.+++... ++++.++++++|+...
T Consensus        94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~-~~~~~~ll~elG~~~~  169 (567)
T PLN02612         94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA-YPNVQNLFGELGINDR  169 (567)
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCC-CchHHHHHHHhCCccc
Confidence            47999999999999999999999999999999999999988764 678899999988764 5578899999998554

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.45  E-value=4.1e-13  Score=90.24  Aligned_cols=77  Identities=31%  Similarity=0.531  Sum_probs=67.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSS   78 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~   78 (130)
                      .||+|+|+|++||++|++|.+.|++|+|+|.+++.||++.+....+...+.+...+++ .....+.+.+++|++....
T Consensus         8 ~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~~f   84 (450)
T COG1231           8 ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLEPF   84 (450)
T ss_pred             CcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCCce
Confidence            3899999999999999999999999999999999999999888877778888777776 5666788999999877654

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.45  E-value=4.5e-13  Score=90.33  Aligned_cols=71  Identities=31%  Similarity=0.551  Sum_probs=65.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLG   72 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g   72 (130)
                      +|+|||||++||+||.+|-+.| .+++|+|..+++||+..+..+.+..++.|+.+.++......-++.+++|
T Consensus        23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g   94 (498)
T KOG0685|consen   23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYG   94 (498)
T ss_pred             eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhC
Confidence            5899999999999999999765 5899999999999999999998889999999999977777889999887

>PLN02487 zeta-carotene desaturase

Probab=99.42  E-value=1.1e-12  Score=92.16  Aligned_cols=75  Identities=27%  Similarity=0.586  Sum_probs=66.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec-ccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      ++|+|||+|++||++|+.|.+.|++|+|+|+.+.+||...++. ..+..++.|.+++... +.+..++++++|+..+
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~-~~~~~~ll~~LGl~~~  151 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC-YNNLFRLMKKVGADEN  151 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCC-cHHHHHHHHhcCCccc
Confidence            3799999999999999999999999999999999999988885 4678889999888753 5678899999998655

>PLN03000 amine oxidase

Probab=99.41  E-value=1.9e-12  Score=93.85  Aligned_cols=76  Identities=28%  Similarity=0.409  Sum_probs=65.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc----CcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID----GVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .+|+|||+|++||++|..|.+.|++|+|+|+.+.+||++.+....    +..+|.|++++.......+..+++++|+...
T Consensus       185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~  264 (881)
T PLN03000        185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY  264 (881)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee
Confidence            379999999999999999999999999999999999999999874    3568999999987655555567899998654

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.38  E-value=2.6e-12  Score=86.27  Aligned_cols=70  Identities=20%  Similarity=0.420  Sum_probs=55.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcc-cccccccccCCCChhHHHHHHHc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLGFTLFNHATSPNTMEFFDSL   71 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~   71 (130)
                      +||+|||||++|+++|..|++.|.+|+|+|+.+.+||++.+....+.. .+.|.+.+.. ......+++..+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t-~~~~v~~~~~~~   72 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT-NNQYVWDYISPF   72 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec-CcHHHHHHHHhh
Confidence            699999999999999999999999999999999999998887665543 3667776653 245555665554

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.36  E-value=6.5e-12  Score=80.49  Aligned_cols=39  Identities=38%  Similarity=0.703  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++||++|+.|++.|++|+|+||+..+||..
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            699999999999999999999999999999998887643

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.35  E-value=1.7e-13  Score=90.46  Aligned_cols=75  Identities=32%  Similarity=0.520  Sum_probs=59.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc----cccCCCChhHHH--HHHHcCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT----LFNHATSPNTME--FFDSLGVD   74 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~--~~~~~g~~   74 (130)
                      ||++|||+||+|..||+..++.|++++++|++..+||         .|++.||.    +++.+...++++  .++..|++
T Consensus        40 ~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGG---------TcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~  110 (506)
T KOG1335|consen   40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGG---------TCLNVGCIPSKALLNNSHLYHEAQHEDFASRGID  110 (506)
T ss_pred             CCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCc---------eeeeccccccHHHhhhhHHHHHHhhhHHHhcCcc
Confidence            7999999999999999999999999999999999999         89999994    344444444442  56777887


Q ss_pred             ceeccceeeE
Q 037740           75 MKSSDMSFSV   84 (130)
Q Consensus        75 ~~~~~~~~~~   84 (130)
                      .....++.+.
T Consensus       111 vs~~~~dl~~  120 (506)
T KOG1335|consen  111 VSSVSLDLQA  120 (506)
T ss_pred             ccceecCHHH
Confidence            7655555443

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.35  E-value=6.1e-12  Score=80.77  Aligned_cols=38  Identities=47%  Similarity=0.853  Sum_probs=35.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++|++||+.|++.|++|+|+|+.+.+||.
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg   63 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG   63 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence            69999999999999999999999999999998888764

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.34  E-value=3e-12  Score=85.00  Aligned_cols=76  Identities=29%  Similarity=0.466  Sum_probs=55.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC--------CCeeeecccC---cccccc------cccccCCCChh
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG--------GHAKTITIDG---VDLDLG------FTLFNHATSPN   63 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g--------g~~~~~~~~~---~~~~~g------~~~~~~~~~~~   63 (130)
                      +||+|||||++||.||..++++|.+|+|||+.+.+|        |++.-++...   +.-+.+      .+.+....+.+
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            699999999999999999999999999999998876        5555444422   111122      13444455677


Q ss_pred             HHHHHHHcCCCce
Q 037740           64 TMEFFDSLGVDMK   76 (130)
Q Consensus        64 ~~~~~~~~g~~~~   76 (130)
                      +..+++.+|+...
T Consensus        84 ~i~~~e~~Gi~~~   96 (408)
T COG2081          84 FIDWVEGLGIALK   96 (408)
T ss_pred             HHHHHHhcCCeeE
Confidence            7788888887554

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.34  E-value=4.4e-12  Score=86.08  Aligned_cols=76  Identities=29%  Similarity=0.565  Sum_probs=44.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC--------CCeeeecc--cCcccccc----c----ccccCCCCh
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG--------GHAKTITI--DGVDLDLG----F----TLFNHATSP   62 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g--------g~~~~~~~--~~~~~~~g----~----~~~~~~~~~   62 (130)
                      |||+|||||++||.||+.+++.|.+|+|+||++.+|        |++.-.+.  ....+...    .    ..+......
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            899999999999999999999999999999998886        56665542  11111111    1    122223345


Q ss_pred             hHHHHHHHcCCCce
Q 037740           63 NTMEFFDSLGVDMK   76 (130)
Q Consensus        63 ~~~~~~~~~g~~~~   76 (130)
                      ++.++++++|++..
T Consensus        81 d~~~ff~~~Gv~~~   94 (409)
T PF03486_consen   81 DLIAFFEELGVPTK   94 (409)
T ss_dssp             HHHHHHHHTT--EE
T ss_pred             HHHHHHHhcCCeEE
Confidence            56677777777543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.33  E-value=1.4e-11  Score=79.74  Aligned_cols=71  Identities=25%  Similarity=0.476  Sum_probs=57.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc--Cccc-ccccccccCCCChhHHHHHHHcC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--GVDL-DLGFTLFNHATSPNTMEFFDSLG   72 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~--~~~~-~~g~~~~~~~~~~~~~~~~~~~g   72 (130)
                      ||++|||+|++|+..|..|++.|.+|.|+||.+.+||.+.+...+  |..+ ..|++.++- .....++++..+.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT-~~~~Vwdyv~~F~   75 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT-DNKRVWDYVNQFT   75 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeec-CchHHHHHHhhhh
Confidence            699999999999999999999999999999999999999887763  3332 458888763 3455666766553

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.31  E-value=2.1e-12  Score=88.86  Aligned_cols=39  Identities=31%  Similarity=0.511  Sum_probs=35.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+||+|++||..+++.|.+|+|+|+ ..+||.+.
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~   41 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV   41 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence            7999999999999999999999999999999 57888443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.30  E-value=2.9e-12  Score=88.70  Aligned_cols=39  Identities=38%  Similarity=0.632  Sum_probs=36.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+.+|..+++.|.+|+|+|+.+..||.+
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c   43 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC   43 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence            799999999999999999999999999999977788843

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.29  E-value=7.4e-12  Score=83.28  Aligned_cols=60  Identities=35%  Similarity=0.590  Sum_probs=42.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|..|++.|++|+|||+++.........            .    ...+.+++++.+|+...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~------------~----l~~~~~~~l~~lgl~~~   61 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGI------------G----LSPNSLRILQRLGLLDE   61 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSE------------E----EEHHHHHHHHHTTEHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhccccccccccc------------c----cccccccccccccchhh
Confidence            589999999999999999999999999999976543311111            1    13556677788876543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PTZ00058 glutathione reductase; Provisional

Probab=99.29  E-value=1.1e-11  Score=87.13  Aligned_cols=36  Identities=44%  Similarity=0.666  Sum_probs=34.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      ||++|||+|++|++||..+++.|.+|+|+|++ .+||
T Consensus        49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GG   84 (561)
T PTZ00058         49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGG   84 (561)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccc
Confidence            79999999999999999999999999999995 6888

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.28  E-value=9.1e-12  Score=86.04  Aligned_cols=40  Identities=43%  Similarity=0.655  Sum_probs=36.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      |||+|||+|++|+++|..|++.|.+|+|+|+ +.+||.+..
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            7999999999999999999999999999999 788996543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.27  E-value=9e-12  Score=86.10  Aligned_cols=39  Identities=41%  Similarity=0.626  Sum_probs=35.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|++||..+++.|.+|+|+|+.. .||.+.
T Consensus         5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~   43 (462)
T PRK06416          5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL   43 (462)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence            799999999999999999999999999999965 888553

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.27  E-value=6.4e-12  Score=87.05  Aligned_cols=39  Identities=33%  Similarity=0.594  Sum_probs=35.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      ||++|||+|++|+++|..|++.|.+|+|+|+. .+||.+.
T Consensus         5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   43 (472)
T PRK05976          5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL   43 (472)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence            79999999999999999999999999999995 7888543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.27  E-value=7.2e-12  Score=86.68  Aligned_cols=39  Identities=33%  Similarity=0.594  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+||+|++||..+++.|.+|+|+|+...+||.+
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c   42 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC   42 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence            799999999999999999999999999999867789854

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.27  E-value=1.7e-11  Score=85.56  Aligned_cols=68  Identities=24%  Similarity=0.369  Sum_probs=55.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCeeeec--ccCcccccccccccCCCChhHHHHHHHc
Q 037740            2 QVAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGGHAKTIT--IDGVDLDLGFTLFNHATSPNTMEFFDSL   71 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~   71 (130)
                      +++|||||++||+||.+|++.    |.+|+|+|+++.+||+..++.  .+|+.++.|+..  ...+.++.++++.+
T Consensus        24 ~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~--~~~y~~l~~ll~~i   97 (576)
T PRK13977         24 KAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM--ENHFECLWDLFRSI   97 (576)
T ss_pred             eEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc--cchHHHHHHHHHhc
Confidence            689999999999999999995    689999999999999987755  456777777765  33456677777665

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.25  E-value=1.3e-10  Score=78.81  Aligned_cols=57  Identities=40%  Similarity=0.649  Sum_probs=44.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGV   73 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~   73 (130)
                      +||+|||||++||++|..|++.|++|+|+|+.+ ..-...+            ..    ...++.+++++.+|+
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r------------~~----~l~~~~~~~L~~lG~   60 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGR------------GI----ALSPNALRALERLGL   60 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCce------------ee----eecHhHHHHHHHcCC
Confidence            589999999999999999999999999999961 1111111            11    125678899999998

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.24  E-value=1.2e-11  Score=83.94  Aligned_cols=37  Identities=41%  Similarity=0.632  Sum_probs=35.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||+||+|++||+.|++.|++|+|+|+.+.+|.
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~   40 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGA   40 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence            7999999999999999999999999999999887775

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.24  E-value=1.4e-11  Score=84.97  Aligned_cols=38  Identities=42%  Similarity=0.616  Sum_probs=35.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|++||..+++.|.+|+|+|+ ..+||.+
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c   40 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTC   40 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccce
Confidence            7999999999999999999999999999999 4688844

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06116 glutathione reductase; Validated

Probab=99.24  E-value=1.3e-11  Score=85.13  Aligned_cols=38  Identities=45%  Similarity=0.632  Sum_probs=35.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|++||..|++.|++|+|+|+. .+||.+
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c   42 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC   42 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence            79999999999999999999999999999994 788844

>PRK08244 hypothetical protein; Provisional

Probab=99.23  E-value=4.2e-11  Score=83.44  Aligned_cols=59  Identities=34%  Similarity=0.437  Sum_probs=44.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      +||+||||||+||++|..|++.|++|+|+|+.+...-..+..                ...+..+++++.+|+..
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~----------------~l~~~~~e~l~~lGl~~   61 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKAL----------------TLHPRTLEILDMRGLLE   61 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCccee----------------EecHHHHHHHHhcCcHH
Confidence            699999999999999999999999999999976432111111                11356677788888743

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.23  E-value=7.4e-12  Score=85.78  Aligned_cols=45  Identities=40%  Similarity=0.634  Sum_probs=41.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT   54 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~   54 (130)
                      ||++|||+|++|..+|+.+++.|.+|.++|+...+||         .|++.||.
T Consensus         5 yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGG---------tCln~GCI   49 (454)
T COG1249           5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG---------TCLNVGCI   49 (454)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCc---------eEEeeCcc
Confidence            7999999999999999999999999999999767888         78888884

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.23  E-value=1.8e-11  Score=84.59  Aligned_cols=41  Identities=32%  Similarity=0.493  Sum_probs=37.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      |||+|||+|++|+++|..|++.|.+|+|+|+.+.+||.+..
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            79999999999999999999999999999998788996543

>PRK06184 hypothetical protein; Provisional

Probab=99.22  E-value=4.6e-11  Score=83.42  Aligned_cols=60  Identities=35%  Similarity=0.466  Sum_probs=45.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+||||||+||++|+.|++.|++|+|+|+.+.+....+..                ...++.+++++.+|+..+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~----------------~l~~~~~e~l~~lGl~~~   63 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGK----------------GIQPRTQEVFDDLGVLDR   63 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccce----------------eecHHHHHHHHHcCcHHH
Confidence            589999999999999999999999999999976543211111                113567788888887543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.22  E-value=2.2e-11  Score=84.07  Aligned_cols=42  Identities=40%  Similarity=0.610  Sum_probs=38.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI   42 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~   42 (130)
                      ++|+|||||++||+||..|.+.|++|+|||+++.+||.|...
T Consensus        11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~   52 (461)
T PLN02172         11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYT   52 (461)
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecC
Confidence            479999999999999999999999999999999999988643

>TIGR02053 MerA mercuric reductase

Probab=99.22  E-value=2.2e-11  Score=84.20  Aligned_cols=39  Identities=31%  Similarity=0.560  Sum_probs=35.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|+++|..+++.|.+|+|+|+.. .||.+-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            799999999999999999999999999999954 788543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.22  E-value=4e-11  Score=81.77  Aligned_cols=35  Identities=37%  Similarity=0.639  Sum_probs=32.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            68999999999999999999999999999997653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.22  E-value=2.6e-11  Score=83.30  Aligned_cols=50  Identities=46%  Similarity=0.759  Sum_probs=44.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCc-EEEEecCCCCCCCeeeecccCcccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGHAKTITIDGVDLD   50 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~~gg~~~~~~~~~~~~~   50 (130)
                      +||+|||||++|+++|+.|.+.|.. ++||||++.+||.|+...+.+.+++
T Consensus         9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~   59 (443)
T COG2072           9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLD   59 (443)
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEEC
Confidence            5899999999999999999999998 9999999999999888777554433

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.20  E-value=2.2e-11  Score=84.13  Aligned_cols=39  Identities=44%  Similarity=0.564  Sum_probs=35.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|+++|..|++.|.+|+|+|+ ...||.+.
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            7999999999999999999999999999999 67888543

>PRK06370 mercuric reductase; Validated

Probab=99.20  E-value=2.9e-11  Score=83.63  Aligned_cols=38  Identities=37%  Similarity=0.493  Sum_probs=34.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|++||..+++.|++|+|+|+. ..||.+
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c   43 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTC   43 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCce
Confidence            79999999999999999999999999999995 677744

>PLN02546 glutathione reductase

Probab=99.20  E-value=1.9e-11  Score=85.98  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=38.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC---------CCCCCCeeeecccCccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE---------DSLGGHAKTITIDGVDLDLGF   53 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~---------~~~gg~~~~~~~~~~~~~~g~   53 (130)
                      |||+|||+|++|+.+|..+++.|.+|+|+|++         ..+||         .|++.||
T Consensus        80 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GG---------tC~n~GC  132 (558)
T PLN02546         80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGG---------TCVLRGC  132 (558)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccC---------cccCcch
Confidence            79999999999999999999999999999962         23455         7888888

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.20  E-value=5.3e-10  Score=78.76  Aligned_cols=60  Identities=23%  Similarity=0.441  Sum_probs=46.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||+|++||++|..|++.|++|+|+|+.+......+...+                ..+.++.++.+|+..+
T Consensus        11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l----------------~~~~~~~L~~lGl~~~   70 (538)
T PRK06183         11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGI----------------DDEALRVLQAIGLADE   70 (538)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeee----------------CHHHHHHHHHcCChhH
Confidence            58999999999999999999999999999998765432222111                3567778888887544

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.19  E-value=9.6e-11  Score=79.46  Aligned_cols=34  Identities=38%  Similarity=0.691  Sum_probs=32.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            6999999999999999999999999999999764

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.19  E-value=3.5e-11  Score=82.71  Aligned_cols=38  Identities=39%  Similarity=0.507  Sum_probs=34.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC-CCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS-LGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~-~gg~   38 (130)
                      |||+|||||++|++||..|++.|.+|+|+|+.+. +||.
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~   42 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGT   42 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCccccee
Confidence            7999999999999999999999999999999753 5773

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.19  E-value=4e-11  Score=82.20  Aligned_cols=36  Identities=33%  Similarity=0.717  Sum_probs=33.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      |||+|||||++|++||+.|+++|++|+|+||.+.+|
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g   41 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG   41 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence            799999999999999999999999999999976554

>PRK06753 hypothetical protein; Provisional

Probab=99.19  E-value=8e-11  Score=79.30  Aligned_cols=35  Identities=43%  Similarity=0.817  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+++..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            48999999999999999999999999999998764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.18  E-value=3.7e-11  Score=82.64  Aligned_cols=39  Identities=41%  Similarity=0.550  Sum_probs=35.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~gg~~   39 (130)
                      |||+|||||++|++||..|++.|.+|+|+|+.+ ..||.+
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~   43 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTC   43 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeE
Confidence            799999999999999999999999999999865 467744

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.18  E-value=9.3e-11  Score=79.57  Aligned_cols=60  Identities=37%  Similarity=0.649  Sum_probs=44.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .||+|||||++||++|..|++.|++|+|+||.+..+.....           ..     ..++..+.++.+|+...
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~g-----------i~-----l~~~~~~~l~~lg~~~~   64 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAG-----------IQ-----LGPNAFSALDALGVGEA   64 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccce-----------ee-----eCchHHHHHHHcCChHH
Confidence            48999999999999999999999999999997654321111           01     13556677788876443

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.18  E-value=1e-10  Score=82.41  Aligned_cols=60  Identities=38%  Similarity=0.630  Sum_probs=46.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||+|++||++|+.|++.|.+|+|+|+.+......+....                ..+.+++++.+|+..+
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l----------------~~~~~~~l~~lGl~~~   83 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICF----------------AKRSLEIFDRLGCGER   83 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEE----------------cHHHHHHHHHcCCcHH
Confidence            58999999999999999999999999999998754332222211                3566778888887544

>PRK10015 oxidoreductase; Provisional

Probab=99.18  E-value=4.1e-11  Score=82.19  Aligned_cols=36  Identities=42%  Similarity=0.807  Sum_probs=33.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      |||+|||||++|++||+.|++.|++|+|+||.+.+|
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g   41 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG   41 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            699999999999999999999999999999976543

>PRK08013 oxidoreductase; Provisional

Probab=99.18  E-value=1.2e-10  Score=79.23  Aligned_cols=66  Identities=26%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+.+.+.-..      +...+.....    ..+..+++++++|+...
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~------g~~~~~r~~~----l~~~s~~~L~~lGl~~~   69 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAA------DAPPALRVSA----INAASEKLLTRLGVWQD   69 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCccccc------CCCCCceeee----cchhHHHHHHHcCCchh
Confidence            699999999999999999999999999999976532100      0111111111    23557788899987544

>PRK06126 hypothetical protein; Provisional

Probab=99.17  E-value=1e-10  Score=82.44  Aligned_cols=34  Identities=44%  Similarity=0.736  Sum_probs=31.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus         8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5899999999999999999999999999999753

>PRK13748 putative mercuric reductase; Provisional

Probab=99.17  E-value=4.2e-11  Score=84.59  Aligned_cols=39  Identities=36%  Similarity=0.611  Sum_probs=35.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|+++|..|++.|.+|+|+|++ .+||.|.
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            79999999999999999999999999999996 7898553

>PRK14694 putative mercuric reductase; Provisional

Probab=99.17  E-value=5.1e-11  Score=82.56  Aligned_cols=39  Identities=36%  Similarity=0.618  Sum_probs=35.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|+++|..|++.|.+|+|+|+. .+||.|.
T Consensus         7 ~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694          7 LHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            79999999999999999999999999999995 6888654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.17  E-value=5.5e-11  Score=82.34  Aligned_cols=39  Identities=31%  Similarity=0.485  Sum_probs=35.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|++||..+++.|.+|+|+|+ ..+||.+.
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~   43 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCL   43 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence            7999999999999999999999999999998 46788443

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.16  E-value=1.1e-10  Score=78.71  Aligned_cols=35  Identities=34%  Similarity=0.703  Sum_probs=32.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      ||+|||||++|+++|+.|++.|++|+|+|+.+.++
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   35 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA   35 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence            79999999999999999999999999999987643

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.16  E-value=5.6e-11  Score=82.89  Aligned_cols=31  Identities=39%  Similarity=0.614  Sum_probs=30.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      |||+|||+|++|++||..+++.|.+|+|+|+
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            7999999999999999999999999999997

>PRK07538 hypothetical protein; Provisional

Probab=99.16  E-value=1.3e-10  Score=79.44  Aligned_cols=35  Identities=43%  Similarity=0.808  Sum_probs=32.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            58999999999999999999999999999997643

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.16  E-value=4.4e-11  Score=82.02  Aligned_cols=44  Identities=20%  Similarity=0.382  Sum_probs=42.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      |||+|||+|++|+.+|..|++.|.+|+++|+++..||++++.+.
T Consensus         5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l   48 (443)
T PTZ00363          5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNL   48 (443)
T ss_pred             ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccH
Confidence            79999999999999999999999999999999999999998755

>PRK07045 putative monooxygenase; Reviewed

Probab=99.15  E-value=1.3e-10  Score=78.80  Aligned_cols=35  Identities=31%  Similarity=0.496  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            58999999999999999999999999999997654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.15  E-value=1.7e-10  Score=77.89  Aligned_cols=33  Identities=24%  Similarity=0.643  Sum_probs=31.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            699999999999999999999999999999864

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.15  E-value=1.8e-10  Score=77.99  Aligned_cols=66  Identities=27%  Similarity=0.433  Sum_probs=45.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+..--     ... -..+.++..    ..++.+++++.+|+...
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~-----~~~-~~~~~r~~~----l~~~~~~~L~~lG~~~~   69 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAF-----EPS-QPMDIRVSA----ISQTSVDLLESLGAWSS   69 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccC-----CCC-CCCCccEEE----ecHHHHHHHHHCCCchh
Confidence            5899999999999999999999999999998642100     000 011122212    24677888899997544

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.15  E-value=8.1e-11  Score=76.65  Aligned_cols=37  Identities=35%  Similarity=0.525  Sum_probs=34.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||||++|+++|+.|++.|.+|+|+|+.+..+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            7999999999999999999999999999999876543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02661 Putative thiazole synthesis

Probab=99.15  E-value=1.8e-10  Score=76.37  Aligned_cols=37  Identities=38%  Similarity=0.665  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++|+++|+.|++. |++|+|+|++..+||
T Consensus        93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG  130 (357)
T PLN02661         93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG  130 (357)
T ss_pred             CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence            5999999999999999999986 899999999888877

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.15  E-value=7e-11  Score=82.10  Aligned_cols=44  Identities=27%  Similarity=0.519  Sum_probs=38.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecC--------CCCCCCeeeecccCccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKE--------DSLGGHAKTITIDGVDLDLGF   53 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~--------~~~gg~~~~~~~~~~~~~~g~   53 (130)
                      ||++|||+|++|+.||..+++. |.+|+|+|++        ..+||         .|++.||
T Consensus         4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GG---------tCln~GC   56 (486)
T TIGR01423         4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGG---------TCVNVGC   56 (486)
T ss_pred             cCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccC---------eecCcCC
Confidence            7999999999999999999997 9999999984        35677         6677766

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07588 hypothetical protein; Provisional

Probab=99.14  E-value=2e-10  Score=77.92  Aligned_cols=34  Identities=35%  Similarity=0.568  Sum_probs=31.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            4899999999999999999999999999999754

>PLN02976 amine oxidase

Probab=99.14  E-value=2.3e-10  Score=86.55  Aligned_cols=77  Identities=26%  Similarity=0.463  Sum_probs=61.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCC-------hhHH-HHHHHc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATS-------PNTM-EFFDSL   71 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~-------~~~~-~~~~~~   71 (130)
                      +||+|||+|++|+++|+.|.+.|++|+|||+.+.+||++.+... .++.++.|+.++.....       .+.. .+.+++
T Consensus       694 ~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ql  773 (1713)
T PLN02976        694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQL  773 (1713)
T ss_pred             CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhc
Confidence            47999999999999999999999999999999999999888764 46778889887765321       1222 367888


Q ss_pred             CCCcee
Q 037740           72 GVDMKS   77 (130)
Q Consensus        72 g~~~~~   77 (130)
                      |+....
T Consensus       774 Gl~l~~  779 (1713)
T PLN02976        774 GLELTV  779 (1713)
T ss_pred             CCcccc
Confidence            876643

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.14  E-value=8.6e-11  Score=79.27  Aligned_cols=35  Identities=40%  Similarity=0.561  Sum_probs=32.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      |||+|||||++|+++|++|++.|.+|+|+|+....
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~   35 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP   35 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            79999999999999999999999999999996543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06185 hypothetical protein; Provisional

Probab=99.14  E-value=1.9e-10  Score=78.33  Aligned_cols=60  Identities=33%  Similarity=0.598  Sum_probs=43.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+++....            +....    .......++++.+|+...
T Consensus         7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~------------~~r~~----~l~~~s~~~L~~lG~~~~   66 (407)
T PRK06185          7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR------------DFRGD----TVHPSTLELMDELGLLER   66 (407)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc------------cccCc----eeChhHHHHHHHcCChhH
Confidence            6999999999999999999999999999999753211            00001    123456778888887443

>PRK06847 hypothetical protein; Provisional

Probab=99.14  E-value=2.2e-10  Score=77.23  Aligned_cols=35  Identities=40%  Similarity=0.698  Sum_probs=32.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .||+|||||++|+++|..|++.|++|+|+|+++..
T Consensus         5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            48999999999999999999999999999997653

>PLN02507 glutathione reductase

Probab=99.14  E-value=9.3e-11  Score=81.80  Aligned_cols=31  Identities=32%  Similarity=0.429  Sum_probs=30.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ||++|||+|++|+.+|..+++.|.+|+|+|+
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            7999999999999999999999999999996

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.14  E-value=2.1e-10  Score=77.64  Aligned_cols=35  Identities=34%  Similarity=0.621  Sum_probs=32.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            58999999999999999999999999999997654

>PRK05868 hypothetical protein; Validated

Probab=99.13  E-value=2.5e-10  Score=77.08  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=32.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            48999999999999999999999999999997654

>PRK07236 hypothetical protein; Provisional

Probab=99.13  E-value=2.8e-10  Score=77.13  Aligned_cols=61  Identities=28%  Similarity=0.479  Sum_probs=44.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++||++|..|++.|++|+|+|+.+..-.            ..|...   ...++.+++++.+|+...
T Consensus         7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~------------~~g~gi---~l~~~~~~~l~~lg~~~~   67 (386)
T PRK07236          7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD------------GRGAGI---VLQPELLRALAEAGVALP   67 (386)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC------------CCCcee---EeCHHHHHHHHHcCCCcc
Confidence            4899999999999999999999999999999753210            011110   013567788888887543

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.13  E-value=6.3e-11  Score=81.24  Aligned_cols=39  Identities=49%  Similarity=0.755  Sum_probs=32.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      ||+|||||++|++||+.+++.|.+|+|+|+.+.+||..+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence            899999999999999999999999999999999998553

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.13  E-value=2.9e-10  Score=77.16  Aligned_cols=62  Identities=32%  Similarity=0.422  Sum_probs=44.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+.+...-          .-+.+...+    ..+.+++++.+|+..+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~----------~~~~~a~~l----~~~~~~~L~~lGl~~~   64 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYV----------LGRIRAGVL----EQGTVDLLREAGVDER   64 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCccc----------CCceeEeeE----CHHHHHHHHHCCChHH
Confidence            5899999999999999999999999999999764210          001122222    3457788888887544

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.13  E-value=2.4e-10  Score=77.62  Aligned_cols=60  Identities=30%  Similarity=0.495  Sum_probs=44.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC--CCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL--GGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~--gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||+|++|+++|+.|++.|++|+|+|+.+..  .+            ..+...+    .++.+++++++|+..+
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~------------~~~a~~l----~~~~~~~l~~lGl~~~   64 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEG------------RIRAGVL----EQGTVDLLREAGVGER   64 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccc------------ccceeEE----CHhHHHHHHHcCChHH
Confidence            58999999999999999999999999999997642  11            1111111    3466778888887443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.13  E-value=2.3e-10  Score=77.79  Aligned_cols=34  Identities=32%  Similarity=0.523  Sum_probs=31.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~   34 (130)
                      |||+|||||++|+++|..|++.|  ++|+|+|+.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            79999999999999999999995  99999999764

>PRK07190 hypothetical protein; Provisional

Probab=99.13  E-value=2e-10  Score=79.89  Aligned_cols=35  Identities=31%  Similarity=0.560  Sum_probs=32.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+||||||+||++|+.|++.|.+|+|+|+.+.+
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            58999999999999999999999999999997654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.13  E-value=2e-10  Score=75.05  Aligned_cols=39  Identities=31%  Similarity=0.550  Sum_probs=35.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||||++|+++|..|++.|.+|+|+|+.+ .||.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~   39 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT   39 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence            799999999999999999999999999999865 677543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.12  E-value=1.9e-10  Score=78.38  Aligned_cols=67  Identities=19%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccc-cccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLD-LGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+...+....    ....+ .+.     ...++.+++++.+|+...
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~----~~~~~~r~~-----~l~~~~~~~L~~lGl~~~   70 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDP----QAPFEPRVS-----ALSAASQRILERLGAWDG   70 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCcccccccc----CCCCCccch-----hhhHHHHHHHHHCChhhh
Confidence            69999999999999999999999999999997532110000    00000 110     124667788888887544

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.12  E-value=1.2e-10  Score=79.44  Aligned_cols=40  Identities=30%  Similarity=0.621  Sum_probs=34.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||||++|+++|++|++.|.+|+|+|+++.+|..++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as   41 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS   41 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence            5899999999999999999999999999999775554333

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.12  E-value=2.5e-10  Score=77.15  Aligned_cols=33  Identities=33%  Similarity=0.744  Sum_probs=31.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~   34 (130)
                      ||+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            8999999999999999999999 99999999754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.12  E-value=2.2e-10  Score=77.63  Aligned_cols=35  Identities=49%  Similarity=0.732  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||+|++|+++|..|++.|.+|+|+|+++..
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            69999999999999999999999999999997643

>PLN02985 squalene monooxygenase

Probab=99.12  E-value=2.6e-10  Score=79.80  Aligned_cols=60  Identities=27%  Similarity=0.422  Sum_probs=43.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|..|++.|.+|+|+|++.....+.           .| .    ...+...+.++++|+...
T Consensus        44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~-----------~g-~----~L~p~g~~~L~~LGl~d~  103 (514)
T PLN02985         44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM-----------MG-E----FMQPGGRFMLSKLGLEDC  103 (514)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc-----------cc-c----ccCchHHHHHHHcCCcch
Confidence            689999999999999999999999999999964321100           01 1    123456677888887554

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.12  E-value=1.2e-10  Score=79.12  Aligned_cols=42  Identities=33%  Similarity=0.583  Sum_probs=36.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKTI   42 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~~   42 (130)
                      +||+|||||++|+++|++|++.  |.+|+|+|+...+|+.++..
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~   46 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGH   46 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccccccc
Confidence            6999999999999999999998  99999999976666544443

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.11  E-value=1.3e-10  Score=77.43  Aligned_cols=38  Identities=42%  Similarity=0.763  Sum_probs=33.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      ||+|||+|++|+++|++|++.|++|+|+|++ .+++.++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~~aS   38 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGSGAS   38 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTSSGG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-ccccccc
Confidence            8999999999999999999999999999998 5555333

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.11  E-value=1.2e-10  Score=79.81  Aligned_cols=41  Identities=46%  Similarity=0.706  Sum_probs=39.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeee
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI   42 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~   42 (130)
                      +|+|||||++||++|..|.+.|++++||||.+.+||.|...
T Consensus         8 ~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    8 DVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             ceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            79999999999999999999999999999999999988766

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.10  E-value=1.6e-10  Score=82.70  Aligned_cols=45  Identities=31%  Similarity=0.667  Sum_probs=39.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC-CCCCCCeeeecccCcccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE-DSLGGHAKTITIDGVDLDLGFT   54 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~-~~~gg~~~~~~~~~~~~~~g~~   54 (130)
                      |||+|||+|++|..+|..+++.|.+|+|+|++ ..+||         .|++.||.
T Consensus       117 yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGG---------tCvn~GCi  162 (659)
T PTZ00153        117 YDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGG---------TCVNVGCI  162 (659)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccc---------ceeEeCCc
Confidence            79999999999999999999999999999974 36788         67777773

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.10  E-value=1.4e-10  Score=78.64  Aligned_cols=32  Identities=50%  Similarity=0.794  Sum_probs=31.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999986

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.7e-10  Score=75.68  Aligned_cols=40  Identities=38%  Similarity=0.670  Sum_probs=33.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCc-EEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~~gg~~~~   41 (130)
                      |||+|||+||+||+||.++++++.+ ++|+|+ ..+||....
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~   44 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTK   44 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcccc
Confidence            6999999999999999999999998 777777 556764433

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.10  E-value=3.7e-10  Score=77.19  Aligned_cols=36  Identities=44%  Similarity=0.810  Sum_probs=32.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~g   36 (130)
                      .+|+|||||++||++|..|++.| .+|+||||.+..+
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            47999999999999999999998 5999999976654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK14727 putative mercuric reductase; Provisional

Probab=99.10  E-value=1.4e-10  Score=80.55  Aligned_cols=41  Identities=34%  Similarity=0.579  Sum_probs=37.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      ||++|||+|++|+++|..|++.|.+|+++|+.+.+||.|..
T Consensus        17 ~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         17 LHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            79999999999999999999999999999997788996643

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.09  E-value=3.9e-10  Score=76.87  Aligned_cols=64  Identities=27%  Similarity=0.342  Sum_probs=45.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCC-CCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLG-GHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~g-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+.. ... +         ...+....    ....+.+++++.+|+..+.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~---------~~~~~r~~----~l~~~~~~~L~~lGl~~~l   70 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALN---------ELPDVRVS----ALSRSSEHILRNLGAWQGI   70 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCccccc---------CCCCccee----cccHHHHHHHHhCCchhhh
Confidence            599999999999999999999999999999852 110 0         00011011    1245788899999975543

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.09  E-value=4e-10  Score=76.71  Aligned_cols=59  Identities=34%  Similarity=0.576  Sum_probs=43.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +|+|||||++||++|..|++.|++|+|+|+.+....             .|...   ...++.++.++.+|+..+
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~-------------~g~gi---~l~~~~~~~L~~~Gl~~~   62 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE-------------VGAGL---QLAPNAMRHLERLGVADR   62 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-------------CCccc---eeChhHHHHHHHCCChHH
Confidence            799999999999999999999999999999764321             11100   113567777888886444

>PRK11445 putative oxidoreductase; Provisional

Probab=99.09  E-value=4.3e-10  Score=75.37  Aligned_cols=34  Identities=35%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      |||+|||+||+|+++|..|++. ++|+|+|+.+..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            7999999999999999999999 999999997654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.09  E-value=2.1e-10  Score=78.07  Aligned_cols=34  Identities=41%  Similarity=0.705  Sum_probs=32.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+||||||+|++||..|++.|++|+|+|+.+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            6999999999999999999999999999998754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.09  E-value=2.7e-10  Score=77.43  Aligned_cols=64  Identities=42%  Similarity=0.736  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc--CcccccccccccCCCChhHHHHHHHcCCC
Q 037740           10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--GVDLDLGFTLFNHATSPNTMEFFDSLGVD   74 (130)
Q Consensus        10 ~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~g~~   74 (130)
                      ++||+||++|+++|++|+|+|+++.+||++.|...+  +..++.|++.+... ..+..+++.++++.
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~-~~~~~~~~~~l~~~   66 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGM-YPNLLNLIDELGLE   66 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETT-SHHHHHHHHHHTHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCccccccc-chhhHHHHHHhhhc
Confidence            689999999999999999999999999999999998  89999999998753 34477888888864

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.08  E-value=4.1e-10  Score=77.50  Aligned_cols=33  Identities=36%  Similarity=0.618  Sum_probs=31.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHH----CCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK----AGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~----~g~~v~v~E~~~   33 (130)
                      |||+|||||++|+++|+.|++    .|++|+|+|+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            799999999999999999999    799999999954

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.08  E-value=1.4e-10  Score=80.68  Aligned_cols=32  Identities=41%  Similarity=0.542  Sum_probs=30.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      ||++|||+|++|+.+|..+++.|.+|+++|+.
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            79999999999999999999999999999973

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.08  E-value=1.6e-10  Score=71.62  Aligned_cols=38  Identities=42%  Similarity=0.680  Sum_probs=31.7

Q ss_pred             EEEccCHHHHHHHHHHHHCCCc-EEEEecCCCCCCCeee
Q 037740            4 AVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGHAKT   41 (130)
Q Consensus         4 ~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~~gg~~~~   41 (130)
                      +|||||++||++|..|.+.|.+ ++|||+++.+||.+..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            6999999999999999999999 9999999999998764

...

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.08  E-value=2.2e-10  Score=79.56  Aligned_cols=39  Identities=36%  Similarity=0.582  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec------CCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK------EDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~------~~~~gg~~   39 (130)
                      ||++|||+|++|++||..+++.|.+|+|+|+      ...+||.+
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c   49 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC   49 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence            7999999999999999999999999999998      24566644

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.08  E-value=2.4e-10  Score=79.97  Aligned_cols=38  Identities=37%  Similarity=0.533  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      |||+|||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt   44 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT   44 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            79999999999999999999999999999997655553

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.08  E-value=5e-10  Score=80.12  Aligned_cols=61  Identities=21%  Similarity=0.312  Sum_probs=44.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+||||||+||++|+.|++. |.+|+|+|+.+...-..+..                ...+.++++++.+|+....
T Consensus        33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~----------------gl~prtleiL~~lGl~d~l   94 (634)
T PRK08294         33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD----------------GIACRTMEMFQAFGFAERI   94 (634)
T ss_pred             CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee----------------EEChHHHHHHHhccchHHH
Confidence            5899999999999999999994 99999999875332111110                1135678888888875543

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.08  E-value=2.4e-10  Score=77.04  Aligned_cols=35  Identities=31%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|++|++.|.+|+|+|+....
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~   38 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP   38 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            69999999999999999999999999999997644

>PRK06834 hypothetical protein; Provisional

Probab=99.07  E-value=6.5e-10  Score=77.45  Aligned_cols=34  Identities=44%  Similarity=0.585  Sum_probs=32.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||+|++|+++|+.|++.|.+|+|+|+.+.
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5899999999999999999999999999999764

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.07  E-value=2.2e-10  Score=79.03  Aligned_cols=33  Identities=45%  Similarity=0.714  Sum_probs=31.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |||+||||||+|+++|..|++.|++|+|+|+..
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            699999999999999999999999999999864

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.06  E-value=3.2e-10  Score=79.31  Aligned_cols=38  Identities=29%  Similarity=0.579  Sum_probs=35.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|.+|++||+.+++.|.+|+|+||.+..||.
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~   99 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN   99 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence            59999999999999999999999999999998888774

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.06  E-value=3e-10  Score=84.13  Aligned_cols=40  Identities=45%  Similarity=0.773  Sum_probs=37.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      ++|+|||||+|||+||+.|++.|++|+|||+.+.+||..+
T Consensus       538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~  577 (1012)
T TIGR03315       538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK  577 (1012)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence            4799999999999999999999999999999988998654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.06  E-value=2.9e-10  Score=84.25  Aligned_cols=40  Identities=40%  Similarity=0.671  Sum_probs=36.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+|||+|||||+||..|++.|++|+|||+.+.+||..+
T Consensus       307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            4799999999999999999999999999999999999543

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.06  E-value=3.8e-10  Score=75.90  Aligned_cols=34  Identities=32%  Similarity=0.661  Sum_probs=32.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||+|++|+++|++|++.|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999654

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.05  E-value=3.4e-10  Score=79.09  Aligned_cols=37  Identities=43%  Similarity=0.598  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G   43 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG   43 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence            6999999999999999999999999999999865444

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.04  E-value=4.3e-10  Score=79.47  Aligned_cols=39  Identities=31%  Similarity=0.681  Sum_probs=35.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||||++||+||..|++.|++|+|+|++ ..||.+.
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~   43 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT   43 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence            79999999999999999999999999999995 6788654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.04  E-value=3.3e-10  Score=77.42  Aligned_cols=36  Identities=56%  Similarity=0.865  Sum_probs=32.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      ||+|||+|++||+||+.++++|.+|+|+||.+..||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            899999999999999999999999999999888777

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PTZ00367 squalene epoxidase; Provisional

Probab=99.04  E-value=5.4e-10  Score=78.87  Aligned_cols=61  Identities=26%  Similarity=0.379  Sum_probs=44.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+++....          ....|.     ...++..+.++++|+...
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~----------~r~~G~-----~L~p~g~~~L~~LGL~d~   94 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP----------DRIVGE-----LLQPGGVNALKELGMEEC   94 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc----------chhhhh-----hcCHHHHHHHHHCCChhh
Confidence            5899999999999999999999999999999641100          000111     124667788899987554

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.04  E-value=9.4e-10  Score=74.62  Aligned_cols=33  Identities=36%  Similarity=0.666  Sum_probs=31.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC---CCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA---GVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~   33 (130)
                      +||+|||+|++|+++|+.|++.   |++|+|+|+..
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~   39 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA   39 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence            6999999999999999999998   99999999953

>PRK09126 hypothetical protein; Provisional

Probab=99.04  E-value=3.3e-10  Score=76.79  Aligned_cols=34  Identities=35%  Similarity=0.547  Sum_probs=32.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            6899999999999999999999999999999765

>PRK07121 hypothetical protein; Validated

Probab=99.03  E-value=4.9e-10  Score=78.18  Aligned_cols=39  Identities=33%  Similarity=0.529  Sum_probs=35.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|.+|++||+.+++.|.+|+|+||.+..||..
T Consensus        21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s   59 (492)
T PRK07121         21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT   59 (492)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence            599999999999999999999999999999988777743

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.03  E-value=4.2e-10  Score=76.24  Aligned_cols=36  Identities=47%  Similarity=0.723  Sum_probs=33.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      ||+|||+|++|+++|+.|++.|++|+|+|+.+..++
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~   36 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG   36 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence            899999999999999999999999999999876664

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07846 mycothione reductase; Reviewed

Probab=99.03  E-value=2.5e-10  Score=78.83  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGF   53 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~   53 (130)
                      ||++|||+|++|.++|..  ..|.+|+++|+ ..+||         .|++.||
T Consensus         2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GG---------tC~n~GC   42 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGG---------TCLNVGC   42 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCC---------cccCcCc
Confidence            799999999999999876  46999999998 56788         5666666

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.03  E-value=3.7e-10  Score=79.17  Aligned_cols=41  Identities=46%  Similarity=0.683  Sum_probs=35.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeee
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI   42 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~   42 (130)
                      +|+|||||++||++|..|.+.|+++++||+++.+||.|+..
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~   43 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYT   43 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHS
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeC
Confidence            69999999999999999999999999999999999998643

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.03  E-value=4.4e-10  Score=80.91  Aligned_cols=43  Identities=40%  Similarity=0.593  Sum_probs=36.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT   43 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~   43 (130)
                      +||+|||||++|+++|+.|++.|.+|+|+|++..++..++...
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~  303 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNR  303 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCc
Confidence            4899999999999999999999999999999765554444443

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.03  E-value=5.2e-10  Score=76.97  Aligned_cols=37  Identities=46%  Similarity=0.782  Sum_probs=34.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLGGH   38 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~gg~   38 (130)
                      ||+|||+|.+|++||+.++++| .+|+|+||.+..||.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~   38 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN   38 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc
Confidence            8999999999999999999999 999999998877764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.02  E-value=5.1e-10  Score=76.42  Aligned_cols=44  Identities=30%  Similarity=0.508  Sum_probs=37.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      .||+|||||++|+++|++|++.|.+|+|+|+...++..++..+.
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~~n~   44 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFANA   44 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhheeccC
Confidence            48999999999999999999999999999997666655555544

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.02  E-value=5.3e-10  Score=78.86  Aligned_cols=35  Identities=34%  Similarity=0.492  Sum_probs=32.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      |||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~   41 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERHDIA   41 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence            69999999999999999999999999999996543

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.02  E-value=6.4e-10  Score=77.09  Aligned_cols=37  Identities=41%  Similarity=0.652  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC--CCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS--LGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~--~gg   37 (130)
                      +||+|||+|++|++||+.+++.|.+|+|+||.+.  .||
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG   43 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG   43 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc
Confidence            5999999999999999999999999999999764  455

>PRK12831 putative oxidoreductase; Provisional

Probab=99.01  E-value=6.7e-10  Score=76.94  Aligned_cols=39  Identities=46%  Similarity=0.600  Sum_probs=36.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++||++|..|++.|++|+|+|+.+.+||..
T Consensus       141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l  179 (464)
T PRK12831        141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVL  179 (464)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCee
Confidence            479999999999999999999999999999988888865

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.01  E-value=5.4e-10  Score=77.36  Aligned_cols=43  Identities=28%  Similarity=0.504  Sum_probs=35.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      +||+|||+|++|+++|++|++.  |.+|+|+|++. +|..+++.+.
T Consensus        25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~-~g~GaSgrn~   69 (460)
T TIGR03329        25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL-CGAGASGRNG   69 (460)
T ss_pred             eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc-cccccccccC
Confidence            4899999999999999999998  89999999954 4544444443

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.00  E-value=4.9e-10  Score=75.32  Aligned_cols=41  Identities=32%  Similarity=0.618  Sum_probs=36.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~------g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||+||+||+||++|.+.      ..+|+|+|+...+||+.-+
T Consensus        77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence            6999999999999999999874      5699999999999997644

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.00  E-value=5e-10  Score=75.95  Aligned_cols=33  Identities=36%  Similarity=0.643  Sum_probs=31.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            699999999999999999999999999999865

>TIGR03452 mycothione_red mycothione reductase

Probab=99.00  E-value=4e-10  Score=77.83  Aligned_cols=41  Identities=24%  Similarity=0.388  Sum_probs=34.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGF   53 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~   53 (130)
                      ||++|||+|++|..+|..  ..|.+|+++|+ ..+||         .|++.||
T Consensus         3 yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GG---------tC~n~GC   43 (452)
T TIGR03452         3 YDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGG---------TCLNVGC   43 (452)
T ss_pred             cCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCC---------eeeccCc
Confidence            799999999999998654  46999999998 56788         5666666

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.99  E-value=2.5e-09  Score=71.26  Aligned_cols=33  Identities=36%  Similarity=0.611  Sum_probs=31.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .||+|||+|.+|.+.|+.|++.|.+|+|+||+-
T Consensus        46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             ccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            589999999999999999999999999999964

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.99  E-value=8.6e-10  Score=78.84  Aligned_cols=37  Identities=41%  Similarity=0.611  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||||+.|+++|+.|+++|++|+|+|+++...|
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            6999999999999999999999999999999755444

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.99  E-value=8.8e-10  Score=82.27  Aligned_cols=39  Identities=46%  Similarity=0.629  Sum_probs=36.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      ++|+|||||++||+||..|++.|++|+|||+.+.+||..
T Consensus       431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l  469 (1006)
T PRK12775        431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVL  469 (1006)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCccee
Confidence            479999999999999999999999999999988888854

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.98  E-value=8.4e-10  Score=74.61  Aligned_cols=36  Identities=47%  Similarity=0.831  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|++|++.|.+|+|+|+....+
T Consensus         5 ~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           5 MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             ceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            589999999999999999999999999999966544

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.98  E-value=9.4e-10  Score=77.12  Aligned_cols=38  Identities=39%  Similarity=0.725  Sum_probs=34.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+| +|++||+.+++.|.+|+|+||.+..||..
T Consensus         8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             cCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            599999999 99999999999999999999988777744

>PLN02463 lycopene beta cyclase

Probab=98.98  E-value=7.6e-10  Score=76.21  Aligned_cols=33  Identities=33%  Similarity=0.583  Sum_probs=31.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            699999999999999999999999999999865

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.97  E-value=1.2e-09  Score=75.69  Aligned_cols=38  Identities=37%  Similarity=0.675  Sum_probs=34.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      ++|+|||+|++|+++|..+++.|.+|+|+|++ ..||.+
T Consensus         1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c   38 (458)
T PRK06912          1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTC   38 (458)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccC
Confidence            37999999999999999999999999999995 577743

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.97  E-value=1.4e-09  Score=75.55  Aligned_cols=41  Identities=29%  Similarity=0.417  Sum_probs=36.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAK--AGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~--~g~~v~v~E~~~~~gg~~~~   41 (130)
                      .+|+|||+||+|++||..|++  .|++|+|||+.+.+||..+.
T Consensus        27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            369999999999999999987  69999999999999986653

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.97  E-value=1.1e-09  Score=74.68  Aligned_cols=39  Identities=49%  Similarity=0.798  Sum_probs=36.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +++|||||++|+.||..|++.|++|.++|+++.+||+..
T Consensus       126 svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma  164 (622)
T COG1148         126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA  164 (622)
T ss_pred             ceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence            589999999999999999999999999999999999743

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.96  E-value=8.8e-10  Score=76.65  Aligned_cols=41  Identities=22%  Similarity=0.394  Sum_probs=35.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||||++|+++|+.|++.  |.+|+|+|+.+.+|...+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~   43 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN   43 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence            6999999999999999999997  9999999997666644443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.96  E-value=1.5e-09  Score=76.74  Aligned_cols=39  Identities=46%  Similarity=0.784  Sum_probs=35.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC--CCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED--SLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~--~~gg~~   39 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||.+  ..||..
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s   45 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA   45 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence            599999999999999999999999999999988  677754

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.96  E-value=2.1e-10  Score=75.37  Aligned_cols=76  Identities=30%  Similarity=0.438  Sum_probs=60.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc----cccCCCChhHHHHHHHcCCCc-
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT----LFNHATSPNTMEFFDSLGVDM-   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~g~~~-   75 (130)
                      ||.++||+|..|+++|..+++.|.++.++|....+||         .|++.||.    ++..+.+.+.++-...+|.+. 
T Consensus        21 fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGG---------TCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~   91 (478)
T KOG0405|consen   21 FDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGG---------TCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN   91 (478)
T ss_pred             cceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCc---------eEEeeccccceeEEehhhhhHHhhhhhhcCCccc
Confidence            7999999999999999999999999999998667888         88999983    345556666777777788766 


Q ss_pred             eeccceeeEE
Q 037740           76 KSSDMSFSVS   85 (130)
Q Consensus        76 ~~~~~~~~~~   85 (130)
                      +...++|...
T Consensus        92 ~~~~fdW~~i  101 (478)
T KOG0405|consen   92 EEGSFDWKVI  101 (478)
T ss_pred             cccCCcHHHH
Confidence            4444555533

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.96  E-value=1.5e-09  Score=78.13  Aligned_cols=40  Identities=45%  Similarity=0.745  Sum_probs=36.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+|||+|++||++|..|++.|++|+|||+.+.+||...
T Consensus       328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            3799999999999999999999999999999998898643

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.96  E-value=1.4e-09  Score=77.20  Aligned_cols=39  Identities=46%  Similarity=0.727  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|++||+.++++|.+|+|+||.+..||..
T Consensus        10 ~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~   48 (574)
T PRK12842         10 CDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence            589999999999999999999999999999988888754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.94  E-value=1.8e-09  Score=79.99  Aligned_cols=40  Identities=50%  Similarity=0.831  Sum_probs=36.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+|||||++|++||..|++.|++|+|+|+.+.+||..+
T Consensus       540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr  579 (1019)
T PRK09853        540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK  579 (1019)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence            3799999999999999999999999999999888998654

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.7e-09  Score=71.04  Aligned_cols=53  Identities=26%  Similarity=0.367  Sum_probs=44.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT   54 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~   54 (130)
                      ||.+|||+|.+||+||.+++..|.+|.++|--. +....++|..+|.|+++||.
T Consensus        20 yDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~-PtP~GtsWGlGGTCvNVGCI   72 (503)
T KOG4716|consen   20 YDLIVIGGGSGGLACAKEAADLGAKVACLDFVK-PTPQGTSWGLGGTCVNVGCI   72 (503)
T ss_pred             ccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc-cCCCCCccccCceeeecccc
Confidence            799999999999999999999999999998532 23355677788899999994

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.93  E-value=2e-09  Score=80.39  Aligned_cols=41  Identities=37%  Similarity=0.624  Sum_probs=37.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||||++||+||..+++.|++|+|+|+.+.+||....
T Consensus       164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            58999999999999999999999999999999889986643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.93  E-value=4.5e-09  Score=75.21  Aligned_cols=33  Identities=45%  Similarity=0.724  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|+|||||++||++|..|++.|++|+|||+++
T Consensus        82 ~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         82 SRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            479999999999999999999999999999964

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.92  E-value=2.1e-09  Score=73.33  Aligned_cols=34  Identities=44%  Similarity=0.696  Sum_probs=30.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GV-DVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~-~v~v~E~~~~   34 (130)
                      +||+|||||++|+++|++|++. |. +|+|+|+...
T Consensus        31 ~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             CCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            5999999999999999999995 85 9999999653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.92  E-value=2.3e-09  Score=78.19  Aligned_cols=40  Identities=48%  Similarity=0.626  Sum_probs=36.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      ++|+|||+|++||+||..|++.|++|+|||+.+.+||...
T Consensus       432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            4799999999999999999999999999999888888643

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.92  E-value=2.5e-09  Score=72.23  Aligned_cols=36  Identities=28%  Similarity=0.577  Sum_probs=33.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg   37 (130)
                      ||+|||||++|+++|..|++.  |++|+|+|+.+..+|
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~   38 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG   38 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            899999999999999999987  999999999887776

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.92  E-value=1.6e-09  Score=75.56  Aligned_cols=41  Identities=22%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||||+.|+++|++|++.  |.+|+|+||.+.+|...++
T Consensus         6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~   48 (494)
T PRK05257          6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN   48 (494)
T ss_pred             ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence            6999999999999999999985  7899999998766654443

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.91  E-value=3.5e-09  Score=70.87  Aligned_cols=36  Identities=44%  Similarity=0.852  Sum_probs=33.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +|+|||||++||++|..|+++|++|+|+|+...+-+
T Consensus         4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~   39 (420)
T KOG2614|consen    4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG   39 (420)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence            799999999999999999999999999999766654

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.91  E-value=2.7e-09  Score=75.51  Aligned_cols=39  Identities=33%  Similarity=0.684  Sum_probs=35.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|.+|+++|+.+++.|.+|+|+|+.+..||.+
T Consensus         7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            589999999999999999999999999999987777753

>PRK10262 thioredoxin reductase; Provisional

Probab=98.91  E-value=2.9e-09  Score=70.56  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=34.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++||+||..|++.|++++++|+. ..||...
T Consensus         7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~   45 (321)
T PRK10262          7 SKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   45 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence            58999999999999999999999999999964 5677543

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.90  E-value=2.6e-09  Score=75.36  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=34.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||....+|
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g   53 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG   53 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence            5999999999999999999999999999999876655

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.90  E-value=3.1e-09  Score=73.45  Aligned_cols=39  Identities=49%  Similarity=0.629  Sum_probs=36.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      ++|+|||+|++||++|..|++.|++|+|+|+.+.+||..
T Consensus       134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l  172 (449)
T TIGR01316       134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV  172 (449)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence            479999999999999999999999999999988888854

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.90  E-value=2.8e-09  Score=75.73  Aligned_cols=38  Identities=34%  Similarity=0.645  Sum_probs=35.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||.+..||.
T Consensus        12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835         12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            59999999999999999999999999999998877773

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.90  E-value=2.9e-09  Score=76.09  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||.+..+|
T Consensus        30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g   66 (617)
T PTZ00139         30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS   66 (617)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence            5999999999999999999999999999999776555

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.90  E-value=3.2e-09  Score=76.04  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=33.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||.+..+|
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            5999999999999999999999999999999875544

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.89  E-value=3.1e-09  Score=75.32  Aligned_cols=37  Identities=38%  Similarity=0.537  Sum_probs=33.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||.+..+|
T Consensus         6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g   42 (566)
T PRK06452          6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS   42 (566)
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            5999999999999999999999999999999866555

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.89  E-value=3.4e-09  Score=75.03  Aligned_cols=38  Identities=34%  Similarity=0.638  Sum_probs=35.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++|+++|+.+++.|.+|+|+||.+..||.
T Consensus         8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~   45 (557)
T PRK07843          8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS   45 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence            59999999999999999999999999999998877774

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.89  E-value=3.2e-09  Score=74.53  Aligned_cols=38  Identities=32%  Similarity=0.576  Sum_probs=34.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||||++|++||.+|++.|++|+|+++  .+||.+.
T Consensus       212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~  249 (517)
T PRK15317        212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL  249 (517)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence            6999999999999999999999999999976  3788664

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.89  E-value=3.5e-09  Score=75.36  Aligned_cols=37  Identities=30%  Similarity=0.508  Sum_probs=33.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||....+|
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g   49 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS   49 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            5999999999999999999999999999999765544

>PRK06996 hypothetical protein; Provisional

Probab=98.89  E-value=5.6e-09  Score=71.11  Aligned_cols=62  Identities=24%  Similarity=0.322  Sum_probs=43.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC----CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG----VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g----~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++|+++|..|++.|    ++|+|+|+.+...-          ..+....    ......+.+++.+|+-..
T Consensus        12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~----------~~~~r~~----~l~~~~~~~L~~lg~~~~   77 (398)
T PRK06996         12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS----------ANDPRAI----ALSHGSRVLLETLGAWPA   77 (398)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC----------CCCceEE----EecHHHHHHHHhCCCchh
Confidence            69999999999999999999987    47999999653211          0000111    124567778888886443

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.88  E-value=3.4e-09  Score=75.91  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||....+|
T Consensus        51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g   87 (635)
T PLN00128         51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS   87 (635)
T ss_pred             cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence            4999999999999999999999999999999776555

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.88  E-value=3.2e-09  Score=72.29  Aligned_cols=44  Identities=36%  Similarity=0.588  Sum_probs=39.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      +||+|||||+.|+++|+.|++.+  ++|+|+||.+.+|...+..+.
T Consensus         4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NS   49 (429)
T COG0579           4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNS   49 (429)
T ss_pred             eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcc
Confidence            69999999999999999999997  999999999988876666554

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.88  E-value=3.7e-09  Score=74.97  Aligned_cols=36  Identities=31%  Similarity=0.517  Sum_probs=33.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      ||+|||+|++|++||+.+++.|.+|+|+||.+..+|
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g   36 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS   36 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            899999999999999999999999999999776554

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02697 lycopene epsilon cyclase

Probab=98.88  E-value=3.7e-09  Score=74.10  Aligned_cols=35  Identities=37%  Similarity=0.456  Sum_probs=32.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      |||+|||+|++|+++|..|++.|++|+++|+....
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~  143 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF  143 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence            69999999999999999999999999999986444

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.88  E-value=3.9e-09  Score=74.10  Aligned_cols=38  Identities=34%  Similarity=0.648  Sum_probs=34.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||||++|++||..|++.|++|+|+|.  .+||.+.
T Consensus       213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            6999999999999999999999999999975  4788654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.87  E-value=3.7e-09  Score=74.86  Aligned_cols=39  Identities=31%  Similarity=0.654  Sum_probs=35.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+| +|++||..+++.|.+|+|+||.+..||.+.
T Consensus        17 ~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         17 VDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             eCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            699999999 899999999999999999999888888543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.87  E-value=4.4e-09  Score=73.08  Aligned_cols=39  Identities=46%  Similarity=0.732  Sum_probs=36.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      ++|+|||+|++|+++|..|++.|++|+|+|+.+.+||..
T Consensus       144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l  182 (471)
T PRK12810        144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL  182 (471)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee
Confidence            479999999999999999999999999999988888854

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.87  E-value=3.8e-09  Score=75.20  Aligned_cols=37  Identities=35%  Similarity=0.526  Sum_probs=33.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      .||+|||+|++||+||+.+++.|.+|+|+||.+..+|
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g   40 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS   40 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            4899999999999999999999999999999776554

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.87  E-value=3.6e-09  Score=74.83  Aligned_cols=36  Identities=31%  Similarity=0.590  Sum_probs=32.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~g   36 (130)
                      |||+|||||+||+.||+.+++.|.+|+++|++. .+|
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG   41 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG   41 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc
Confidence            799999999999999999999999999999973 444

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.87  E-value=4.4e-09  Score=74.83  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=33.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.|||+||+.+++.|.+|+|+||....+|
T Consensus         8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g   44 (588)
T PRK08958          8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS   44 (588)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            4999999999999999999999999999999866555

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.87  E-value=3.9e-09  Score=75.22  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=33.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||....+|
T Consensus        13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g   49 (598)
T PRK09078         13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS   49 (598)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence            5999999999999999999999999999999765544

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.86  E-value=3.2e-09  Score=71.81  Aligned_cols=34  Identities=32%  Similarity=0.549  Sum_probs=31.4

Q ss_pred             cEEEEccCHHHHHHHHHH--HHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVL--AKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l--~~~g~~v~v~E~~~~~   35 (130)
                      ||+|||+|+||+++|..|  ++.|.+|+|+|+++..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  7779999999987765

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.86  E-value=4.2e-09  Score=73.12  Aligned_cols=38  Identities=42%  Similarity=0.789  Sum_probs=34.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      .|++|||+|++|+.+|..+++.|.+|+++|+. ..||.+
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c   39 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAA   39 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcc
Confidence            37999999999999999999999999999985 578833

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=3.7e-09  Score=75.83  Aligned_cols=36  Identities=31%  Similarity=0.522  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+|+...++
T Consensus        36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         36 FDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            499999999999999999999999999999866654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.85  E-value=6.2e-09  Score=71.95  Aligned_cols=40  Identities=30%  Similarity=0.341  Sum_probs=35.6

Q ss_pred             cEEEEccCHHHHHHHHHHH-HCCCcEEEEecCCCCCCCeee
Q 037740            2 QVAVIGGGISGLASAFVLA-KAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~-~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      .|+|||+||+|++||..|. +.|++|+|||+.+.+||..+.
T Consensus        41 rVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         41 KVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             EEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            6999999999999999765 569999999999999997654

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.85  E-value=5.6e-09  Score=74.24  Aligned_cols=37  Identities=24%  Similarity=0.515  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC---CcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG---VDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g---~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|   .+|+|+||....++
T Consensus         6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~   45 (577)
T PRK06069          6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS   45 (577)
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence            59999999999999999999998   89999999876655

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.85  E-value=5.2e-09  Score=72.85  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=35.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||||++|+++|+.|++.  +.+|+|+||.+.+|-..+.
T Consensus         7 ~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~   49 (497)
T PRK13339          7 KDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN   49 (497)
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence            5999999999999999999998  8999999995567755553

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.84  E-value=6.3e-09  Score=71.69  Aligned_cols=67  Identities=33%  Similarity=0.443  Sum_probs=48.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +|+|||+||+||++|..|++.|+.|+++|+.+..||+...        .+....+........++.++..|++..
T Consensus       125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y--------GIP~~kl~k~i~d~~i~~l~~~Gv~~~  191 (457)
T COG0493         125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY--------GIPDFKLPKDILDRRLELLERSGVEFK  191 (457)
T ss_pred             EEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe--------cCchhhccchHHHHHHHHHHHcCeEEE
Confidence            6899999999999999999999999999999999985432        222222222223445567777775444

>PRK12839 hypothetical protein; Provisional

Probab=98.84  E-value=6.3e-09  Score=73.82  Aligned_cols=40  Identities=35%  Similarity=0.600  Sum_probs=36.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|.+|+++|+.+++.|.+|+|+|+....||.+.
T Consensus         9 ~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            5899999999999999999999999999999888887643

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.84  E-value=6.6e-09  Score=74.76  Aligned_cols=40  Identities=35%  Similarity=0.737  Sum_probs=36.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      ++|+|||+|++|+++|..|++.|++|+|+|+.+.+||..+
T Consensus       194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            4799999999999999999999999999999988888653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.83  E-value=8.4e-09  Score=71.62  Aligned_cols=40  Identities=48%  Similarity=0.783  Sum_probs=36.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+|||+|++|+++|..|++.|++|+++|+.+.+||..+
T Consensus       142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            4799999999999999999999999999999998888554

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.82  E-value=8.4e-09  Score=74.11  Aligned_cols=40  Identities=43%  Similarity=0.715  Sum_probs=36.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+|||+|++||++|..|++.|++|+|||+.+.+||..+
T Consensus       311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            3699999999999999999999999999999998888543

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.82  E-value=4.5e-09  Score=68.83  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~g   36 (130)
                      ||++|||+|.+|+.+|.+|++.+ .+|+|+|+.+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            79999999999999999999997 7999999865543

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.82  E-value=7.6e-09  Score=74.43  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+|+.+..++
T Consensus         6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s   42 (657)
T PRK08626          6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS   42 (657)
T ss_pred             ccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence            5999999999999999999999999999999776554

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.81  E-value=8.1e-09  Score=71.55  Aligned_cols=39  Identities=46%  Similarity=0.732  Sum_probs=35.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      ++|+|||+|++|+++|..|++.|++|+|+|+.+.+||..
T Consensus       141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l  179 (457)
T PRK11749        141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL  179 (457)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence            479999999999999999999999999999988888743

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.81  E-value=8.7e-09  Score=71.54  Aligned_cols=33  Identities=42%  Similarity=0.752  Sum_probs=31.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +||+|||+|++||+||+.+++.|.+|+|+||.+
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            699999999999999999999999999999975

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.81  E-value=6.7e-09  Score=73.41  Aligned_cols=37  Identities=30%  Similarity=0.434  Sum_probs=32.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|.|||+||+.++ .|.+|+|+||.+..||.
T Consensus        10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395         10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             CCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            59999999999999999986 59999999998776663

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=7.7e-09  Score=73.49  Aligned_cols=37  Identities=24%  Similarity=0.561  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++||+||+.+++.  |.+|+|+||....||
T Consensus         4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg   42 (575)
T PRK05945          4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS   42 (575)
T ss_pred             ccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence            5999999999999999999987  489999999766554

>PLN02815 L-aspartate oxidase

Probab=98.80  E-value=8.6e-09  Score=73.34  Aligned_cols=36  Identities=33%  Similarity=0.557  Sum_probs=33.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.| +|+|+||.+..||
T Consensus        30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg   65 (594)
T PLN02815         30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES   65 (594)
T ss_pred             cCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence            59999999999999999999999 9999999887666

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.80  E-value=9.8e-09  Score=63.51  Aligned_cols=33  Identities=42%  Similarity=0.765  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ||+|||||++|+++|..|++.+.+++++|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999988653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.80  E-value=8.3e-09  Score=71.04  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=32.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|.+||+||..+. .|.+|+|+||.+..+|.
T Consensus         5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          5 ADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            59999999999999999974 79999999998776663

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.79  E-value=9.9e-09  Score=73.34  Aligned_cols=36  Identities=28%  Similarity=0.522  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|.|||+||+.+++.  |.+|+|+||.+..+
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~   49 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR   49 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence            5999999999999999999998  99999999976543

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.79  E-value=1e-08  Score=77.81  Aligned_cols=39  Identities=44%  Similarity=0.786  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      .||+|||+|.+|++||+.+++.|.+|+|+||.+..||..
T Consensus       410 ~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            489999999999999999999999999999998888754

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.78  E-value=1.2e-08  Score=72.52  Aligned_cols=40  Identities=38%  Similarity=0.623  Sum_probs=36.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|.+|+++|..+++.|.+|+|+|+.+..||.+.
T Consensus        13 ~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134         13 CDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            5999999999999999999999999999999887787543

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.78  E-value=1.1e-08  Score=69.62  Aligned_cols=35  Identities=46%  Similarity=0.638  Sum_probs=31.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            38999999999999999999999999999976544

>TIGR00551 nadB L-aspartate oxidase

Probab=98.78  E-value=1.3e-08  Score=71.12  Aligned_cols=37  Identities=38%  Similarity=0.623  Sum_probs=33.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      .||+|||+|++||+||+.+++.|. |+|+||.+..+|.
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~   39 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN   39 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence            599999999999999999999997 9999998766653

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.78  E-value=1e-08  Score=71.55  Aligned_cols=36  Identities=28%  Similarity=0.603  Sum_probs=31.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-C-CcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-G-VDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g-~~v~v~E~~~~~g   36 (130)
                      +||+|||||+.|+++|+.|++. + .+|+|+||.+.++
T Consensus        46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a   83 (497)
T PTZ00383         46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA   83 (497)
T ss_pred             ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence            6999999999999999999996 3 6999999976544

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.76  E-value=1.4e-08  Score=72.30  Aligned_cols=37  Identities=30%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|.+||+||+.+++.  |.+|+|+||....+|
T Consensus         5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g   43 (582)
T PRK09231          5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS   43 (582)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence            5999999999999999999987  579999999876665

>PRK08275 putative oxidoreductase; Provisional

Probab=98.76  E-value=1.5e-08  Score=71.71  Aligned_cols=35  Identities=31%  Similarity=0.500  Sum_probs=31.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~   35 (130)
                      +||+|||+|.+||+||+.+++.  |.+|+|+||.+..
T Consensus        10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275         10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            5999999999999999999986  7899999997754

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.76  E-value=1.6e-08  Score=71.50  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC-CCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS-LGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~-~gg~   38 (130)
                      .||+|||+|.+||+||+.+ +.|.+|+|+||.+. .||.
T Consensus         8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~   45 (543)
T PRK06263          8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC   45 (543)
T ss_pred             cCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence            5999999999999999999 89999999999754 3443

>TIGR00275 flavoprotein, HI0933 family

Probab=98.75  E-value=8.9e-09  Score=70.24  Aligned_cols=34  Identities=41%  Similarity=0.778  Sum_probs=32.0

Q ss_pred             EEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            4 AVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         4 ~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +|||||++|++||+.+++.|.+|+|+|+++.+|+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~   34 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGK   34 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccc
Confidence            5999999999999999999999999999888775

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.75  E-value=1.6e-08  Score=71.93  Aligned_cols=39  Identities=38%  Similarity=0.531  Sum_probs=34.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++||+||+.+++.  |.+|+|+||....++.+
T Consensus         4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            5999999999999999999987  58999999987766633

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.74  E-value=1.6e-08  Score=74.62  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=32.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      .+|+|||+|||||+||+.|++.|++|+|+|+....|
T Consensus       384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~g  419 (1028)
T PRK06567        384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITL  419 (1028)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccc
Confidence            369999999999999999999999999999865433

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.74  E-value=1.9e-08  Score=71.01  Aligned_cols=38  Identities=45%  Similarity=0.669  Sum_probs=35.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|.|||.||..+++.|.+|+|+||.+..+|+
T Consensus         7 ~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~   44 (562)
T COG1053           7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH   44 (562)
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence            69999999999999999999999999999998877654

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.74  E-value=1.7e-08  Score=70.80  Aligned_cols=37  Identities=27%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      .||+|||+|.|||+||..+++ |.+|+|+||.+..+|.
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~   40 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN   40 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence            499999999999999999976 8999999998776664

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.73  E-value=2.2e-08  Score=69.72  Aligned_cols=39  Identities=44%  Similarity=0.584  Sum_probs=35.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||||++|+-+|..++.+|++|+++|+++...|+.
T Consensus        13 ~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS   51 (532)
T COG0578          13 FDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS   51 (532)
T ss_pred             CCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence            699999999999999999999999999999988766644

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.73  E-value=2.3e-08  Score=70.35  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=35.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||+|++|+.+|..|+++|++|+++|+....|+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence            7999999999999999999999999999999887775

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.73  E-value=2.2e-08  Score=68.48  Aligned_cols=34  Identities=50%  Similarity=0.799  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      ||+|||||++|+.+|..|++.|.+|+|+|+.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            7999999999999999999999999999986654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.72  E-value=2.2e-08  Score=71.28  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++||+||+.+++. .+|+|+||.+..+|
T Consensus         6 ~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          6 YDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             ccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            5999999999999999999986 99999999765444

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.71  E-value=2.6e-08  Score=70.30  Aligned_cols=37  Identities=32%  Similarity=0.436  Sum_probs=33.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|.+||+||+.+++. .+|+|+||....+|.
T Consensus         9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            5999999999999999999887 899999998766663

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.71  E-value=3.1e-08  Score=69.15  Aligned_cols=39  Identities=46%  Similarity=0.698  Sum_probs=35.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      .+|+|||+|++|+++|..|++.|++|+|+|+.+.+||..
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l  182 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL  182 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee
Confidence            379999999999999999999999999999988888754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.71  E-value=3.2e-08  Score=70.30  Aligned_cols=38  Identities=45%  Similarity=0.783  Sum_probs=35.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +|+|||+|++||++|..|++.|++|+|+|+.+.+||..
T Consensus       139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l  176 (564)
T PRK12771        139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM  176 (564)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee
Confidence            69999999999999999999999999999999888854

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.71  E-value=3.2e-08  Score=70.45  Aligned_cols=39  Identities=38%  Similarity=0.713  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|.+|+++|+.+++.|.+|+|+|+....||.+
T Consensus        17 ~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~   55 (578)
T PRK12843         17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT   55 (578)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            589999999999999999999999999999988888754

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.68  E-value=3.8e-08  Score=70.32  Aligned_cols=33  Identities=36%  Similarity=0.722  Sum_probs=30.5

Q ss_pred             cEEEEccCHHHHHHHHHHH----HCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLA----KAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~----~~g~~v~v~E~~~~   34 (130)
                      ||+|||+|.|||+||+.++    +.|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            8999999999999999998    67999999999654

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.67  E-value=3.1e-08  Score=72.54  Aligned_cols=34  Identities=29%  Similarity=0.538  Sum_probs=31.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~   34 (130)
                      ++|+|||||++||++|+.|++.  |++|+|+|+++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            4799999999999999999998  899999999765

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.65  E-value=6.6e-08  Score=64.96  Aligned_cols=40  Identities=43%  Similarity=0.549  Sum_probs=36.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+|||+|++|+++|..|++.|++|+++|+.+.+||...
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            3799999999999999999999999999999988888543

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=98.64  E-value=7.2e-08  Score=65.82  Aligned_cols=62  Identities=27%  Similarity=0.505  Sum_probs=53.6

Q ss_pred             HHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcc--cccccccccCCCChhHHHHHHHcCCCce
Q 037740           14 ASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD--LDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus        14 ~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+.|+++|++|+|+|+++.+||++.+...+++.  +|.|.+++.. ...++.++++++|+...
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~   64 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG-AYTNLLALLRRIGAEPR   64 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc-ccHHHHHHHHHhCCchh
Confidence            48999999999999999999999999999887655  8999988874 35678899999998654

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.63  E-value=6.2e-08  Score=66.39  Aligned_cols=32  Identities=47%  Similarity=0.738  Sum_probs=30.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |||+|||+|++|+++|+.+++.|.+|+|+|+.
T Consensus         3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            69999999999999999999999999999985

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.63  E-value=4.4e-08  Score=69.99  Aligned_cols=34  Identities=35%  Similarity=0.471  Sum_probs=31.2

Q ss_pred             EEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      |+|||+|++||+||+.+++.|.+|+|+||.+.++
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~   34 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR   34 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence            6899999999999999999999999999977444

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.61  E-value=5.3e-08  Score=72.63  Aligned_cols=39  Identities=49%  Similarity=0.730  Sum_probs=36.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +.|+|||+||+||+||-.|.+.|+.|+|+||.+++||..
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll 1824 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLL 1824 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCcee
Confidence            368999999999999999999999999999999999854

>PRK13984 putative oxidoreductase; Provisional

Probab=98.61  E-value=8.9e-08  Score=68.55  Aligned_cols=40  Identities=38%  Similarity=0.700  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+|||+|++|+++|..|.+.|++|+|+|+.+.+||...
T Consensus       284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            3689999999999999999999999999999888888543

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.61  E-value=3.7e-08  Score=66.90  Aligned_cols=56  Identities=36%  Similarity=0.538  Sum_probs=46.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLF   56 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~   56 (130)
                      ||++|||+|.-||.||.+|++.|.+|+|+|++...||.+.+..+ .|+.+..+..++
T Consensus        15 ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~   71 (561)
T KOG4254|consen   15 YDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLL   71 (561)
T ss_pred             cceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHH
Confidence            79999999999999999999999999999998778887665554 677776655443

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.60  E-value=7.2e-08  Score=63.26  Aligned_cols=31  Identities=35%  Similarity=0.760  Sum_probs=29.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      |||+|||||++|++||+.|+++|.+++++.+
T Consensus         3 fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~   33 (421)
T COG3075           3 FDVAIIGGGLAGLTCGLALQQAGKRCAIVNR   33 (421)
T ss_pred             ccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence            7999999999999999999999999999976

>PRK02106 choline dehydrogenase; Validated

Probab=98.60  E-value=6.1e-08  Score=68.80  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E~~~   33 (130)
                      ||++|||+|.+|+.+|.+|++ .|.+|+|+|+.+
T Consensus         6 ~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            799999999999999999999 799999999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.59  E-value=9e-08  Score=71.24  Aligned_cols=34  Identities=41%  Similarity=0.646  Sum_probs=31.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||+|.+||+||+.+++.|.+|+|+||...
T Consensus        14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            5999999999999999999999999999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.55  E-value=3.1e-07  Score=48.76  Aligned_cols=35  Identities=46%  Similarity=0.654  Sum_probs=32.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      .++|||+|+.|+-.|..|++.|.+|+++++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            48999999999999999999999999999987764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.55  E-value=1.5e-07  Score=65.27  Aligned_cols=58  Identities=34%  Similarity=0.592  Sum_probs=37.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC---CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            2 QVAVIGGGISGLASAFVLAKAG---VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g---~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      ||+|||||++|..+|..|++.+   .+|+|+|+...+            .+.+|-.+     .+.+..+++.+|+...
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~------------~~~vGe~~-----~p~~~~~~~~lgi~e~   61 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP------------RIGVGEST-----LPSLRPFLRRLGIDEA   61 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---------------SSEEE-------THHHHCHHHHT--HH
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC------------CCCccccc-----hHHHHHHHHHcCCChH
Confidence            7999999999999999999997   899999985432            23344433     3445567788887655

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.55  E-value=2.4e-07  Score=55.42  Aligned_cols=68  Identities=22%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             EEEccCHHHHHHHHHHHHC-----CCcEEEEecCCCCC-CCeeeec-ccCcccccccccccC--CCC-hhHHHHHHHcC
Q 037740            4 AVIGGGISGLASAFVLAKA-----GVDVVLYEKEDSLG-GHAKTIT-IDGVDLDLGFTLFNH--ATS-PNTMEFFDSLG   72 (130)
Q Consensus         4 ~IiG~G~~Gl~~a~~l~~~-----g~~v~v~E~~~~~g-g~~~~~~-~~~~~~~~g~~~~~~--~~~-~~~~~~~~~~g   72 (130)
                      +|||+|++|++++..|.+.     ..+|+|||+++. | |.+.... .....++.....++.  ... .++.+|++..+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~   78 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANG   78 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcC
Confidence            5999999999999999988     468999999655 5 5433322 223344554433322  223 56667766555

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.54  E-value=1.8e-07  Score=66.39  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      |||+|||+|++|+.+|..+++.|.+|+++|++...+
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~   36 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTI   36 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccc
Confidence            799999999999999999999999999999875433

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.53  E-value=1.4e-07  Score=63.75  Aligned_cols=35  Identities=37%  Similarity=0.714  Sum_probs=28.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEE-ecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLY-EKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~-E~~~~~g   36 (130)
                      ||+|||||.||+.||+.+++.|.+|+++ ++.+.+|
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~   36 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG   36 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence            8999999999999999999999999999 4434444

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK09897 hypothetical protein; Provisional

Probab=98.52  E-value=2.2e-07  Score=65.50  Aligned_cols=41  Identities=24%  Similarity=0.591  Sum_probs=34.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCC-CCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLG-GHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~g-g~~~~   41 (130)
                      ++|+|||+|++|+++|..|.+.+  .+|+|||++..+| |.+.+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays   45 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS   45 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence            47999999999999999999864  5899999988777 54433

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.51  E-value=1.6e-07  Score=61.72  Aligned_cols=35  Identities=34%  Similarity=0.563  Sum_probs=31.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .|++|||+|+-|+++|++|++.|.++.++|+.+.+
T Consensus         8 ~~viiVGAGVfG~stAyeLaK~g~killLeqf~~p   42 (399)
T KOG2820|consen    8 RDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLP   42 (399)
T ss_pred             eeEEEEcccccchHHHHHHHhcCCeEEEEeccCCC
Confidence            37999999999999999999999999999986544

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.51  E-value=1.4e-07  Score=66.30  Aligned_cols=32  Identities=31%  Similarity=0.495  Sum_probs=29.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .||+|||+|.+||+||+.++  +.+|+|+||.+.
T Consensus        10 ~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512         10 GRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            48999999999999999986  679999999775

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.50  E-value=1.8e-07  Score=61.88  Aligned_cols=36  Identities=42%  Similarity=0.725  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg   37 (130)
                      ||+|||||..|++.|+.|.++    |++|+|+|+++...-
T Consensus        88 dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq  127 (509)
T KOG2853|consen   88 DVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ  127 (509)
T ss_pred             CEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence            799999999999999999875    799999999875443

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.49  E-value=2.5e-07  Score=63.19  Aligned_cols=33  Identities=36%  Similarity=0.681  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ||++|||+|++|+++|+.+++.|.+|+++|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            799999999999999999999999999999854

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.46  E-value=8.6e-07  Score=60.86  Aligned_cols=71  Identities=23%  Similarity=0.334  Sum_probs=49.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC-CCeeeecccCccccccccccc---CCCChhHHHHHHHc
Q 037740            1 MQVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG-GHAKTITIDGVDLDLGFTLFN---HATSPNTMEFFDSL   71 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g-g~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~   71 (130)
                      ++|+|||+|++|.+.|.+|.+.   ...+.|+|+.+..| |.+++....-..+++....++   +..+.++++|++..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~   79 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ   79 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhc
Confidence            6899999999999999999986   22399999988887 445444443344555443222   23356788888776

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.41  E-value=6.5e-07  Score=59.31  Aligned_cols=40  Identities=43%  Similarity=0.716  Sum_probs=34.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC--CCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE--DSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~--~~~gg~~~   40 (130)
                      +||+|+|+|++||.||.+|+.+|.+|+++|..  ..+||.+.
T Consensus         6 ~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf   47 (552)
T COG3573           6 ADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF   47 (552)
T ss_pred             ccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence            58999999999999999999999999999763  45666543

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.40  E-value=3e-07  Score=65.08  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=30.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      ||++|||+|++|..+|..|++.|.+|+|+|+.
T Consensus         8 ~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           8 YDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             CCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            69999999999999999999889999999985

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.38  E-value=7.5e-08  Score=59.75  Aligned_cols=38  Identities=34%  Similarity=0.646  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~   38 (130)
                      .||+|+|+|.+||++|+..+++  ..+|.++|..-.+||.
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG  116 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG  116 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence            3899999999999999999965  7799999997777763

>TIGR01810 betA choline dehydrogenase

Probab=98.37  E-value=4.4e-07  Score=64.16  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      |++|||+|.+|+.+|.+|++.+ .+|+|+|+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            8999999999999999999998 7999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.36  E-value=4.8e-07  Score=62.42  Aligned_cols=34  Identities=44%  Similarity=0.774  Sum_probs=30.3

Q ss_pred             EEccCHHHHHHHHHHHHCCCcEEEEecCCC--CCCC
Q 037740            5 VIGGGISGLASAFVLAKAGVDVVLYEKEDS--LGGH   38 (130)
Q Consensus         5 IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~--~gg~   38 (130)
                      |||+|.+|++||+.+++.|.+|+|+||.+.  .||.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~   36 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN   36 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence            799999999999999999999999999774  3553

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=98.33  E-value=1.2e-06  Score=58.72  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=34.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCee
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~   40 (130)
                      .|.|||+||||+.+|..|.++  +..|.|+|+.+.+.|..+
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR   62 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR   62 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence            589999999999999999985  789999999998888543

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=98.33  E-value=9.8e-07  Score=60.70  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=35.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      |||+|+|.|+.-+..|..|++.|.+|+.+|+++..||.+.+.+.
T Consensus         5 yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l   48 (438)
T PF00996_consen    5 YDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNL   48 (438)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-H
T ss_pred             ceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccH
Confidence            79999999999999999999999999999999999999988885

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.31  E-value=1.1e-06  Score=60.79  Aligned_cols=36  Identities=28%  Similarity=0.620  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~g   36 (130)
                      .+|+|||+|++|+++|..|++.+  .+|+|+|+++..+
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~   38 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS   38 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence            47999999999999999999875  5899999977643

>PLN02785 Protein HOTHEAD

Probab=98.31  E-value=9.4e-07  Score=63.11  Aligned_cols=32  Identities=31%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ||++|||+|.+|+.+|..|++ +.+|+|+|+.+
T Consensus        56 yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         56 YDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             CCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            799999999999999999999 69999999864

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.29  E-value=2.4e-06  Score=59.07  Aligned_cols=41  Identities=29%  Similarity=0.508  Sum_probs=35.3

Q ss_pred             EEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCeeeec
Q 037740            3 VAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGGHAKTIT   43 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg~~~~~~   43 (130)
                      .=|||+|+|+|+||..|.+.    |.+|+++|+.+..||..-+..
T Consensus         5 AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g   49 (500)
T PF06100_consen    5 AYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG   49 (500)
T ss_pred             EEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence            45899999999999999996    669999999999998665443

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.23  E-value=2.3e-06  Score=59.19  Aligned_cols=35  Identities=20%  Similarity=0.491  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +|+|||||++|+++|..|.+.  +.+|+|+|+++..+
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            699999999999999999886  67999999976543

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.21  E-value=2.6e-06  Score=58.21  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~~   35 (130)
                      +|+|||+|++|++||..|.+.+.  +|+++++.+..
T Consensus         5 ~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             cEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            69999999999999999999876  79999886543

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.20  E-value=6.2e-07  Score=62.41  Aligned_cols=39  Identities=33%  Similarity=0.542  Sum_probs=35.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||||.+|.-||.-.+-+|+++.++|+++..-|+.
T Consensus        68 fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   68 FDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS  106 (680)
T ss_pred             ccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence            799999999999999999999999999999988766643

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=9.2e-07  Score=58.78  Aligned_cols=36  Identities=36%  Similarity=0.651  Sum_probs=30.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      |||+|||+||+|-+||.+.+++|.|+-++  ..+.||.
T Consensus       212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQ  247 (520)
T COG3634         212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQ  247 (520)
T ss_pred             ceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCe
Confidence            79999999999999999999999999766  2345664

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=6.8e-06  Score=51.64  Aligned_cols=42  Identities=31%  Similarity=0.456  Sum_probs=33.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEec----CCCCCCCeeeec
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK----EDSLGGHAKTIT   43 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~----~~~~gg~~~~~~   43 (130)
                      .|+|||+||++..||++++++.++.++||.    +-.+||...+..
T Consensus        10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT   55 (322)
T KOG0404|consen   10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT   55 (322)
T ss_pred             eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence            489999999999999999999999999995    223456544443

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.13  E-value=2.1e-06  Score=56.47  Aligned_cols=44  Identities=41%  Similarity=0.534  Sum_probs=37.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      ||++|||+|+.|++.|.+|.-+  +.+|.|+|+....+-+-++.+.
T Consensus        49 ~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNS   94 (453)
T KOG2665|consen   49 YDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNS   94 (453)
T ss_pred             ccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeeccccc
Confidence            7999999999999999999876  9999999998777655554444

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.12  E-value=3.2e-06  Score=58.36  Aligned_cols=32  Identities=34%  Similarity=0.571  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ||+|||+|++||++|+.|... ++|+|+-|.+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence            799999999999999999988 99999998543

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.09  E-value=6.4e-06  Score=54.40  Aligned_cols=38  Identities=42%  Similarity=0.720  Sum_probs=34.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      .|+|||+|++||+|+..+...|-.|+++|++...||..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS   48 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS   48 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence            38999999999999999999988899999999999854

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=5.1e-06  Score=56.27  Aligned_cols=45  Identities=22%  Similarity=0.429  Sum_probs=42.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID   45 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~   45 (130)
                      |||+|||.|..=...|...++.|.+|+-+|+++..||.|+++...
T Consensus         9 fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    9 FDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             ccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            799999999999999999999999999999999999999998874

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.04  E-value=6.5e-06  Score=56.82  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=30.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .+|+|||||.+|+.+|..|.+.+.+|+|||+++.
T Consensus        11 ~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318         11 PNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            3799999999999999999877899999998654

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=98.03  E-value=7e-06  Score=58.28  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~   35 (130)
                      ||.+|||||.||+..|..|++. .++|+++|+....
T Consensus        58 yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   58 YDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             CCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            7999999999999999999997 7899999985443

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.00  E-value=1.2e-05  Score=54.74  Aligned_cols=38  Identities=45%  Similarity=0.626  Sum_probs=35.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +++|||+|+.|+.+|..+.+.|.+|+++|+.+.+++..
T Consensus       138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~  175 (415)
T COG0446         138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL  175 (415)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence            68999999999999999999999999999999988843

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.99  E-value=1.8e-05  Score=53.17  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~   34 (130)
                      ||+++||.||++|+.|..|...+ .+++.||+.+.
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            69999999999999999999985 89999998653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.91  E-value=2.6e-05  Score=53.06  Aligned_cols=34  Identities=15%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~   34 (130)
                      .+++|||+|++|+++|..|.+.  ..+|+|+++++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            3799999999999999999875  568999988653

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.84  E-value=2.4e-05  Score=52.90  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~   34 (130)
                      +|+|||||++|+.+|..+.++   +.+|+|+|+++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            589999999999999999643   689999998654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.82  E-value=7.4e-06  Score=53.24  Aligned_cols=36  Identities=31%  Similarity=0.818  Sum_probs=31.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC------CcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG------VDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g------~~v~v~E~~~~~gg   37 (130)
                      .|+|+|||+.|.++|++|++.+      ..+++||.....||
T Consensus        12 ~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen   12 KIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             EEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            5899999999999999999986      68999999665544

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.81  E-value=3.8e-05  Score=46.03  Aligned_cols=32  Identities=41%  Similarity=0.648  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|+++|++|.++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999998864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.74  E-value=4.9e-05  Score=51.70  Aligned_cols=32  Identities=34%  Similarity=0.538  Sum_probs=28.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC----CCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA----GVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~   32 (130)
                      |||+|+|||+.|++.|..|...    ..+|.++|..
T Consensus        37 ~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   37 YDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             CCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            7999999999999999999865    5699999976

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.72  E-value=6.3e-05  Score=46.12  Aligned_cols=33  Identities=42%  Similarity=0.701  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||+|.-|...|..++..|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            488999999999999999999999999998653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=4.6e-05  Score=53.57  Aligned_cols=32  Identities=34%  Similarity=0.608  Sum_probs=29.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |||+|||||-||+-||...++.|.++.++-.+
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            79999999999999999999999999988653

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.69  E-value=7.3e-05  Score=51.67  Aligned_cols=37  Identities=27%  Similarity=0.528  Sum_probs=33.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg   37 (130)
                      +||++||||+.+.+.+..|++.  ..++.|+||-+.++.
T Consensus         4 ~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~   42 (488)
T PF06039_consen    4 YDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVAL   42 (488)
T ss_pred             eeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchh
Confidence            6999999999999999999997  789999999877663

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.69  E-value=7.5e-05  Score=52.09  Aligned_cols=33  Identities=42%  Similarity=0.575  Sum_probs=30.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||.|.+|+++|..|.+.|++|+++|++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            589999999999999999999999999998654

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=6.4e-05  Score=49.91  Aligned_cols=34  Identities=41%  Similarity=0.705  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .|-|||+|++|.-||+.++++|..|.++|..+.-
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            3779999999999999999999999999986543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.65  E-value=0.0001  Score=51.74  Aligned_cols=32  Identities=38%  Similarity=0.544  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|||+|.+|+++|..|.+.|++|+++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999999999999999999999999754

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00013  Score=49.08  Aligned_cols=44  Identities=23%  Similarity=0.415  Sum_probs=40.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      |||+|+|.|+.-+..+..|+..|.+|+++|+++..|+...+.+.
T Consensus         7 yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl   50 (434)
T COG5044           7 YDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTL   50 (434)
T ss_pred             ccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeH
Confidence            79999999999999999999999999999999999987666554

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.62  E-value=0.00013  Score=46.38  Aligned_cols=34  Identities=32%  Similarity=0.603  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .+++|||+|..|.+.|..|.+.|+.|+++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            4689999999999999999999999999998753

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=7.7e-05  Score=51.83  Aligned_cols=32  Identities=34%  Similarity=0.553  Sum_probs=29.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |||+|||||-||+-||...++.|.+++++..+
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            79999999999999999999999999998653

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.58  E-value=0.00014  Score=49.82  Aligned_cols=33  Identities=33%  Similarity=0.674  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~   34 (130)
                      .|+|||||.+|+.+|..|.+.-  .+++++|+++.
T Consensus         5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence            5899999999999999999974  89999999764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.58  E-value=0.00012  Score=54.37  Aligned_cols=34  Identities=15%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             EEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC
Q 037740            3 VAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG   36 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g   36 (130)
                      |+|||+|++|+++|..|.+.   +++|+|||+.+.++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~   37 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN   37 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence            58999999999999998875   57999999977654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.57  E-value=0.00017  Score=49.49  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=32.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++|+.+.+.+
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  181 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG  181 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence            589999999999999999999999999998766543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.55  E-value=0.00018  Score=50.49  Aligned_cols=34  Identities=38%  Similarity=0.684  Sum_probs=31.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|.+|+-+|..|++.|.+|+++|+.+.+
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i  215 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI  215 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            5899999999999999999999999999987654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.55  E-value=0.00022  Score=49.52  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|.+|+.+|..+++.|.+|+++|+.+.+.
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  193 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL  193 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence            58999999999999999999999999999976554

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.51  E-value=0.0002  Score=53.53  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=30.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~g   36 (130)
                      +|+|||+|++|+.+|..|.+.    +++|+||++.+.++
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            699999999999999999764    57999999877654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.51  E-value=0.00019  Score=47.65  Aligned_cols=32  Identities=44%  Similarity=0.716  Sum_probs=30.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|.-|.+.|..|++.|++|+++|+++
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            68999999999999999999999999999865

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.50  E-value=0.00014  Score=44.86  Aligned_cols=34  Identities=38%  Similarity=0.537  Sum_probs=27.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +.|.|||.|-.||..|..|++.|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            4689999999999999999999999999998653

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.49  E-value=0.00031  Score=41.61  Aligned_cols=31  Identities=39%  Similarity=0.516  Sum_probs=28.8

Q ss_pred             EEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |+|+|+|..|+..|..|++.|.+|.++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998754

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.48  E-value=0.00026  Score=49.47  Aligned_cols=35  Identities=31%  Similarity=0.532  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|.+|+-+|..|.+.|.+|+++|+.+.+.
T Consensus       172 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  206 (461)
T TIGR01350       172 SLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL  206 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence            58999999999999999999999999999876543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.47  E-value=0.00028  Score=48.07  Aligned_cols=35  Identities=40%  Similarity=0.580  Sum_probs=31.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++++.+.+.
T Consensus       143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l  177 (377)
T PRK04965        143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL  177 (377)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence            58999999999999999999999999999876543

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.42  E-value=0.00024  Score=51.27  Aligned_cols=32  Identities=44%  Similarity=0.684  Sum_probs=27.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEE-EEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVV-LYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~-v~E~~~   33 (130)
                      ||+|||+|..|.++|++|++.|.+.. ++|+..
T Consensus        41 ~vvViggG~~g~~~~yhlak~g~k~avlle~~~   73 (856)
T KOG2844|consen   41 DVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSR   73 (856)
T ss_pred             cEEEEcCCchhHHHHHHHHHccccceEEEeeee
Confidence            79999999999999999999999854 555543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.42  E-value=0.00035  Score=49.03  Aligned_cols=35  Identities=34%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il  210 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI  210 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            58999999999999999999999999999876554

>TIGR02053 MerA mercuric reductase

Probab=97.40  E-value=0.00038  Score=48.70  Aligned_cols=35  Identities=37%  Similarity=0.613  Sum_probs=31.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       168 ~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  202 (463)
T TIGR02053       168 SLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL  202 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence            58999999999999999999999999999876543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.40  E-value=0.0004  Score=48.55  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=31.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|.+|+-+|..+.+.|.+|+++|+.+.+.
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll  206 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL  206 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            58999999999999999999999999999876543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.39  E-value=0.00041  Score=48.43  Aligned_cols=36  Identities=33%  Similarity=0.521  Sum_probs=32.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      .++|||||..|+=.|..+++.|.+|+|+|+.+.+-.
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp  210 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP  210 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            489999999999999999999999999999877643

>PRK07846 mycothione reductase; Reviewed

Probab=97.39  E-value=0.00041  Score=48.48  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            58999999999999999999999999999876543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.36  E-value=0.00046  Score=48.26  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  208 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL  208 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC
Confidence            58999999999999999999999999999876553

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.35  E-value=0.00044  Score=48.19  Aligned_cols=32  Identities=44%  Similarity=0.714  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|..|+.+|..|++.|++|+++|++.
T Consensus         7 ~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999999999999999999999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.33  E-value=0.00044  Score=45.45  Aligned_cols=32  Identities=41%  Similarity=0.629  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|.+.|..+++.|++|+++|+++
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            58999999999999999999999999999864

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.33  E-value=0.00041  Score=45.61  Aligned_cols=32  Identities=28%  Similarity=0.587  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..|+++|++|+++|+++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999999864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.32  E-value=0.00052  Score=48.11  Aligned_cols=34  Identities=35%  Similarity=0.560  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..+++.|.+|+++|+.+.+
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  207 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA  207 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            5899999999999999999999999999986644

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.32  E-value=0.00054  Score=47.83  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il  202 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL  202 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            58999999999999999999999999999876543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06370 mercuric reductase; Validated

Probab=97.32  E-value=0.00059  Score=47.77  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..+++.|.+|+++|+.+.+.
T Consensus       173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  207 (463)
T PRK06370        173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL  207 (463)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence            58999999999999999999999999999876554

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.32  E-value=0.00056  Score=47.97  Aligned_cols=35  Identities=31%  Similarity=0.487  Sum_probs=31.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il  210 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC  210 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            58999999999999999999999999999866543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.32  E-value=0.00064  Score=42.59  Aligned_cols=32  Identities=38%  Similarity=0.482  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||||..|+..+..|.+.|.+|+|+.+..
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            58999999999999999999999999998754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.31  E-value=0.00055  Score=47.40  Aligned_cols=34  Identities=32%  Similarity=0.604  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            5899999999999999999999999999987654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.30  E-value=0.00058  Score=47.74  Aligned_cols=35  Identities=31%  Similarity=0.477  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  211 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL  211 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            58999999999999999999999999999876543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.30  E-value=0.00051  Score=45.89  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..++..|++|+++|+++
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            47899999999999999999999999999864

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00013  Score=49.36  Aligned_cols=44  Identities=25%  Similarity=0.462  Sum_probs=40.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      |||+|+|.|+.=+..+..|+..|.+|+.+|||+..||...+.+.
T Consensus         5 yDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl   48 (440)
T KOG1439|consen    5 YDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTL   48 (440)
T ss_pred             eeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeH
Confidence            79999999999999999999999999999999999997776654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.26  E-value=0.00098  Score=38.93  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~   32 (130)
                      .++|||+|-+|.+++..|...|.+ ++|+.|+
T Consensus        14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   14 RVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            589999999999999999999987 9999885

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.25  E-value=0.00069  Score=44.71  Aligned_cols=32  Identities=38%  Similarity=0.561  Sum_probs=29.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .+|.|||+|..|...|..|++.|++|++++++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            36899999999999999999999999999884

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.25  E-value=0.00082  Score=47.00  Aligned_cols=35  Identities=40%  Similarity=0.716  Sum_probs=31.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  205 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL  205 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            58999999999999999999999999999877554

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.24  E-value=0.00058  Score=44.95  Aligned_cols=33  Identities=42%  Similarity=0.683  Sum_probs=30.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            478999999999999999999999999998654

>TIGR03452 mycothione_red mycothione reductase

Probab=97.24  E-value=0.00073  Score=47.24  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=31.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|++.|.+|+++|+.+.+
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l  204 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            5899999999999999999999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.24  E-value=0.00066  Score=47.26  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++.+.+.
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~  184 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN  184 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            58999999999999999999999999999876543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.24  E-value=0.0006  Score=44.93  Aligned_cols=32  Identities=44%  Similarity=0.535  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..++++|++|+++|+++
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58899999999999999999999999999864

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.23  E-value=0.00042  Score=38.57  Aligned_cols=31  Identities=35%  Similarity=0.512  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|||+|..|...+..|.+.|.+|+|+.+.
T Consensus         9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    9 RVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            5899999999999999999999999999875

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.22  E-value=0.0008  Score=47.30  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=31.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..+++.|.+|+++|+.+.+
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  218 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF  218 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence            5899999999999999999999999999987654

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.22  E-value=0.00077  Score=44.56  Aligned_cols=31  Identities=35%  Similarity=0.484  Sum_probs=29.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .+|.|||+|..|...|..|++.|++|+++.+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            3689999999999999999999999999987

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.21  E-value=0.0009  Score=40.16  Aligned_cols=30  Identities=30%  Similarity=0.356  Sum_probs=27.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .|+|||||..|+..+..|.+.|.+|+|+.+
T Consensus        15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         15 VVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            589999999999999999999999999964

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.21  E-value=0.00078  Score=44.72  Aligned_cols=32  Identities=34%  Similarity=0.446  Sum_probs=29.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      ++|+|||+|..|...|..|++.|.+|+++.|.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            46899999999999999999999999999885

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.19  E-value=0.00071  Score=44.57  Aligned_cols=32  Identities=31%  Similarity=0.602  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            58899999999999999999999999999865

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.19  E-value=0.00077  Score=45.95  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|||+|.+|+.++..+...|.+|++++++.
T Consensus       169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       169 DVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999999999999853

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.17  E-value=0.00071  Score=47.84  Aligned_cols=32  Identities=31%  Similarity=0.481  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|+|+|++|+.++..+...|.+|.++|.++
T Consensus       167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999998754

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.15  E-value=0.0011  Score=44.22  Aligned_cols=32  Identities=34%  Similarity=0.528  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|..|.+.|..|++.|++|+++.|+.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            58999999999999999999999999998754

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.15  E-value=0.00095  Score=46.06  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|.|+.|+.+|..+...|.+|+++|.++
T Consensus       204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            58999999999999999999999999999865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.14  E-value=0.0011  Score=44.07  Aligned_cols=33  Identities=33%  Similarity=0.662  Sum_probs=29.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~   33 (130)
                      ++|.|||+|..|.++|+.|+..|  .+++++|++.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            46899999999999999999998  4899999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.14  E-value=0.0012  Score=41.36  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|||+|-.|...+..|.+.|.+|+|+++.
T Consensus        12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         12 RVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            5899999999999999999999999999864

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.11  E-value=0.0014  Score=39.69  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|.+|+.|+..|...|.+++++|...
T Consensus        22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             EEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            58999999999999999999999999998753

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.09  E-value=0.0011  Score=43.57  Aligned_cols=32  Identities=44%  Similarity=0.579  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..+++.|++|+++|+++
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            58999999999999999999999999999654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.07  E-value=0.0014  Score=45.81  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|.+|+-.|..+++.|.+|+++++.+.+
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  201 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI  201 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            5899999999999999999999999999986654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.05  E-value=0.0016  Score=40.61  Aligned_cols=31  Identities=35%  Similarity=0.495  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|++.|. +++++|.+
T Consensus        23 ~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        23 TVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            58999999999999999999999 69999886

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.05  E-value=0.0017  Score=45.59  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=31.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++.+.+..
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~  214 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP  214 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC
Confidence            589999999999999999999999999998665543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.03  E-value=0.0017  Score=36.63  Aligned_cols=31  Identities=35%  Similarity=0.541  Sum_probs=27.8

Q ss_pred             EEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |+|+|.|..|...+..|.+.+.+|+++|+++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            6899999999999999999887999999875

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.03  E-value=0.0017  Score=45.27  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=31.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  194 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFL  194 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            58999999999999999999999999999876543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.02  E-value=0.0013  Score=49.09  Aligned_cols=34  Identities=41%  Similarity=0.660  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..|.+.|.+|+|+|+.+.+
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l  175 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL  175 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence            5899999999999999999999999999986654

>PRK04148 hypothetical protein; Provisional

Probab=97.02  E-value=0.00098  Score=38.81  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .+++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus        19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             EEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999 999999999999999999998765

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.02  E-value=0.0016  Score=45.27  Aligned_cols=34  Identities=26%  Similarity=0.499  Sum_probs=30.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|.+|+-+|..+.+.|.+|+++++.+.+
T Consensus       151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  184 (444)
T PRK09564        151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI  184 (444)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence            5899999999999999999999999999986643

>PTZ00058 glutathione reductase; Provisional

Probab=97.00  E-value=0.0016  Score=46.86  Aligned_cols=34  Identities=15%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..+++.|.+|+++|+.+.+
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i  272 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRL  272 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence            5899999999999999999999999999987654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.99  E-value=0.0018  Score=43.38  Aligned_cols=33  Identities=27%  Similarity=0.548  Sum_probs=30.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|||+|.-|.+.|..|++.|++|.++.|+.
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            368999999999999999999999999999853

>PRK06116 glutathione reductase; Validated

Probab=96.99  E-value=0.0018  Score=45.19  Aligned_cols=34  Identities=32%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            5899999999999999999999999999986543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.98  E-value=0.0016  Score=46.38  Aligned_cols=34  Identities=47%  Similarity=0.572  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|..|+-+|..|+..+.+|+++|+.+.+
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l  387 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL  387 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence            6899999999999999999999999999976544

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.98  E-value=0.0017  Score=47.44  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll  348 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL  348 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence            58999999999999999999999999999876654

>PRK14694 putative mercuric reductase; Provisional

Probab=96.96  E-value=0.0021  Score=45.12  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            58999999999999999999999999998743

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.96  E-value=0.0016  Score=48.90  Aligned_cols=34  Identities=38%  Similarity=0.528  Sum_probs=31.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .++|||+|..|+-+|..|.+.|.+|+|+|+.+.+
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l  180 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML  180 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            4799999999999999999999999999987653

>PLN02507 glutathione reductase

Probab=96.96  E-value=0.0019  Score=45.79  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..+++.|.+|+++++.+.+
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~  238 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP  238 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence            5899999999999999999999999999986643

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.96  E-value=0.0018  Score=43.51  Aligned_cols=32  Identities=34%  Similarity=0.455  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            68999999999999999999999999999854

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=96.96  E-value=0.00026  Score=48.04  Aligned_cols=41  Identities=27%  Similarity=0.486  Sum_probs=34.5

Q ss_pred             EEEEccCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCeeeec
Q 037740            3 VAVIGGGISGLASAFVLAKA----GVDVVLYEKEDSLGGHAKTIT   43 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~----g~~v~v~E~~~~~gg~~~~~~   43 (130)
                      +-|||+|+|||++|..|.+.    |.+++++|.-+..||..-...
T Consensus        25 aY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~   69 (587)
T COG4716          25 AYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAG   69 (587)
T ss_pred             eEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCC
Confidence            56999999999999999986    669999999888888554433

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.95  E-value=0.0015  Score=45.22  Aligned_cols=34  Identities=38%  Similarity=0.509  Sum_probs=30.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|.|||.|..|+..|..|++.|++|+++++++.
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            3689999999999999999999999999998643

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.94  E-value=0.0019  Score=42.99  Aligned_cols=32  Identities=34%  Similarity=0.590  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58899999999999999999999999999754

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.94  E-value=0.0019  Score=38.81  Aligned_cols=33  Identities=33%  Similarity=0.340  Sum_probs=26.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|-|..|..+|..|...|.+|+|.|.+|.
T Consensus        25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            478999999999999999999999999999763

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.93  E-value=0.0016  Score=45.08  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|..|++.|..|++.|++|+++|+++
T Consensus         5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999999999999999764

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.92  E-value=0.0017  Score=38.05  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=27.5

Q ss_pred             EEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|+|+|..+.+.+..+...|++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            57999999999999999999999999997643

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.92  E-value=0.0019  Score=44.08  Aligned_cols=33  Identities=36%  Similarity=0.623  Sum_probs=30.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +++.|||+|-.||+.|.-|++.|++|+++|.++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            478999999999999999999999999998754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.90  E-value=0.0021  Score=44.95  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|||+|..|+-+|..+.+.|.+|+++++.+
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            58999999999999999999999999998754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.90  E-value=0.002  Score=43.18  Aligned_cols=32  Identities=41%  Similarity=0.575  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999999999999999999999999999854

>PRK13748 putative mercuric reductase; Provisional

Probab=96.89  E-value=0.0023  Score=45.90  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            58999999999999999999999999999853

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.89  E-value=0.0027  Score=37.00  Aligned_cols=32  Identities=34%  Similarity=0.503  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|..|...|..|++.|. +++++|.+.
T Consensus         4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             EEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            68999999999999999999998 699999743

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.89  E-value=0.0025  Score=42.36  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|.-|.+.|..|.+.|++|.+++++.
T Consensus         6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            68899999999999999999999999999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.88  E-value=0.0022  Score=42.80  Aligned_cols=32  Identities=44%  Similarity=0.714  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|..|...|..|++.|++|.++++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            68999999999999999999999999999863

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.88  E-value=0.002  Score=42.51  Aligned_cols=32  Identities=38%  Similarity=0.551  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            48899999999999999999999999999764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.87  E-value=0.0025  Score=43.01  Aligned_cols=32  Identities=28%  Similarity=0.571  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|||+|..|..+|..|++.|. +++++|++.
T Consensus        26 ~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         26 HVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            58999999999999999999998 789999853

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.86  E-value=0.0024  Score=43.99  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|.|..|..+|..+...|.+|+++|.++
T Consensus       197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       197 TVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             EEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            58999999999999999999999999998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02546 glutathione reductase

Probab=96.85  E-value=0.0025  Score=45.78  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=31.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|++.|.+|+++|+.+.+
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i  287 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV  287 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence            5899999999999999999999999999987654

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.85  E-value=0.0027  Score=45.01  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +++|||+|..|+-.|..|++.|.+|++++++
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            5899999999999999999999999999874

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.85  E-value=0.0023  Score=41.99  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|||.|..|.+.|..|.+.|++|.++++++
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999999999999999864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.84  E-value=0.0023  Score=46.00  Aligned_cols=33  Identities=30%  Similarity=0.478  Sum_probs=30.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            589999999999999999999999999998664

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.84  E-value=0.0024  Score=45.48  Aligned_cols=34  Identities=44%  Similarity=0.518  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|..|+-+|..|+..+.+|+++++.+.+
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            6899999999999999999999999999986544

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.83  E-value=0.0027  Score=41.83  Aligned_cols=32  Identities=28%  Similarity=0.521  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +++|||+|-+|.++++.|.+.|. +++|++|+.
T Consensus       129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            58999999999999999999997 799998863

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.83  E-value=0.0035  Score=38.09  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=28.0

Q ss_pred             cEEEEccCH-HHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGI-SGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +++|||+|- .|..+|..|.+.|.+|++..+.
T Consensus        46 ~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          46 KVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            689999996 6999999999999999999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.82  E-value=0.0028  Score=43.36  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=29.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~   32 (130)
                      .+++|||+|-.|.++|..|++.+ .+|++.+|.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            37899999999999999999998 899999986

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.82  E-value=0.0023  Score=44.07  Aligned_cols=60  Identities=25%  Similarity=0.356  Sum_probs=40.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-------------CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHH
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-------------VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFF   68 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-------------~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   68 (130)
                      +++|+|||++|.=.|.+|+..-             .+|+++|+.+.+.-                 .+.........+.+
T Consensus       157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-----------------~~~~~l~~~a~~~L  219 (405)
T COG1252         157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-----------------MFPPKLSKYAERAL  219 (405)
T ss_pred             EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-----------------CCCHHHHHHHHHHH
Confidence            5899999999999999988751             27888888766533                 01111123445688


Q ss_pred             HHcCCCceec
Q 037740           69 DSLGVDMKSS   78 (130)
Q Consensus        69 ~~~g~~~~~~   78 (130)
                      +++|++....
T Consensus       220 ~~~GV~v~l~  229 (405)
T COG1252         220 EKLGVEVLLG  229 (405)
T ss_pred             HHCCCEEEcC
Confidence            8888877653

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.81  E-value=0.0026  Score=44.93  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +++|||+|..|+-.|..|++.|.+|++++++
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            5899999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.81  E-value=0.0029  Score=38.12  Aligned_cols=32  Identities=41%  Similarity=0.567  Sum_probs=27.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.+||-|.-|...|..|.++|++|.++++++
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            58899999999999999999999999999864

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK10262 thioredoxin reductase; Provisional

Probab=96.80  E-value=0.003  Score=42.11  Aligned_cols=34  Identities=35%  Similarity=0.604  Sum_probs=30.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|++.+.+|+++++.+..
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            5899999999999999999999999999986543

>PRK12831 putative oxidoreductase; Provisional

Probab=96.79  E-value=0.0027  Score=44.60  Aligned_cols=32  Identities=28%  Similarity=0.476  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            58999999999999999999999999998743

>PRK14727 putative mercuric reductase; Provisional

Probab=96.78  E-value=0.0036  Score=44.19  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +++|||+|..|+-.|..+.+.|.+|+++++.
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            5899999999999999999999999999874

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.77  E-value=0.0032  Score=44.53  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..+...   |.+|+++|+.+.+.
T Consensus       189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il  226 (486)
T TIGR01423       189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL  226 (486)
T ss_pred             eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence            589999999999999876654   89999999876643

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.77  E-value=0.0035  Score=42.34  Aligned_cols=31  Identities=39%  Similarity=0.677  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|++.|. +++++|.+
T Consensus        26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            68999999999999999999999 89999985

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.76  E-value=0.0032  Score=41.69  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|||.|.+|..++..|.+.|.+|+++++++
T Consensus       154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        154 NVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.73  E-value=0.003  Score=44.79  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|..|+.++..+...|.+|+++|+++
T Consensus       166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999998754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.72  E-value=0.003  Score=44.79  Aligned_cols=32  Identities=34%  Similarity=0.566  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..|+++|++|+++|+++
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58899999999999999999999999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.72  E-value=0.0035  Score=42.40  Aligned_cols=32  Identities=25%  Similarity=0.466  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~   33 (130)
                      .++|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            489999999999999999999987 99998754

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.72  E-value=0.0044  Score=38.70  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus        30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            58999999999999999999999999998754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.70  E-value=0.0035  Score=43.72  Aligned_cols=32  Identities=34%  Similarity=0.456  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|.+|+++|..|++.|.+|++.|++.
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            47899999999999999999999999998653

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.69  E-value=0.002  Score=42.94  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=28.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-C-CcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-G-VDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g-~~v~v~E~~~~   34 (130)
                      +.|+|+|||.+|++.|..+.++ + -+|.|+|+...
T Consensus        40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            4689999999999999999987 4 37899987543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0021  Score=42.58  Aligned_cols=70  Identities=30%  Similarity=0.539  Sum_probs=50.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC--------CCCCCCeeeecc---------cCcccccccccccCCCChhH
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE--------DSLGGHAKTITI---------DGVDLDLGFTLFNHATSPNT   64 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~--------~~~gg~~~~~~~---------~~~~~~~g~~~~~~~~~~~~   64 (130)
                      +|+|||+|.+|.-+|..+.-.|.+|+++|.+        +..+++..+...         ....+-+|+.....+..+..
T Consensus       170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkL  249 (371)
T COG0686         170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKL  249 (371)
T ss_pred             cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCcee
Confidence            6899999999999999999999999999987        234566554444         12345567777777655544


Q ss_pred             H--HHHHHc
Q 037740           65 M--EFFDSL   71 (130)
Q Consensus        65 ~--~~~~~~   71 (130)
                      +  ++++.+
T Consensus       250 vt~e~vk~M  258 (371)
T COG0686         250 VTREMVKQM  258 (371)
T ss_pred             hhHHHHHhc
Confidence            4  445554

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.68  E-value=0.0065  Score=35.79  Aligned_cols=33  Identities=39%  Similarity=0.713  Sum_probs=29.0

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .+|.|||+ |..|.+.|+.|...++  +++++|.+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            36899999 9999999999999865  799999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.68  E-value=0.0055  Score=37.42  Aligned_cols=32  Identities=31%  Similarity=0.481  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|||+|..|...|..|++.|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999998 599998753

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.67  E-value=0.0038  Score=43.83  Aligned_cols=32  Identities=34%  Similarity=0.557  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            58999999999999999999999999999754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.67  E-value=0.0041  Score=41.04  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=30.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|||.|..|.+.|..|...|.+|++++|++.
T Consensus       153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       153 NVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            589999999999999999999999999998653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.63  E-value=0.0046  Score=40.51  Aligned_cols=33  Identities=36%  Similarity=0.601  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~  175 (300)
T TIGR01292       143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK  175 (300)
T ss_pred             EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence            589999999999999999999999999998543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.63  E-value=0.0037  Score=44.42  Aligned_cols=32  Identities=47%  Similarity=0.614  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58899999999999999999999999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.63  E-value=0.0053  Score=38.83  Aligned_cols=33  Identities=36%  Similarity=0.554  Sum_probs=29.5

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.||| +|.-|.+.|..|.+.|++|.++.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            3689997 79999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.63  E-value=0.005  Score=40.96  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~   34 (130)
                      .|.|||+|..|.++|+.|+..|  .+++++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            5899999999999999999998  47999998543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.63  E-value=0.0062  Score=35.81  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|||.|..|...|..|++.|. +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            48999999999999999999998 699998753

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.61  E-value=0.0042  Score=43.36  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=30.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++++|+|+|..|...|..|.+.|.+|+++|+++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            468999999999999999999999999999854

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.61  E-value=0.0053  Score=42.90  Aligned_cols=33  Identities=30%  Similarity=0.451  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|.|.+|+++|..|.+.|++|+++|..+.
T Consensus         7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            589999999999999999999999999987543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.61  E-value=0.0041  Score=42.14  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=26.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|+.||.++..+...|. +|+++|+++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            38999999999999888888886 566667754

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.61  E-value=0.0058  Score=40.63  Aligned_cols=32  Identities=34%  Similarity=0.600  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|..|...|..++..|. +++++|.+.
T Consensus         4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            68999999999999999999875 899999754

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.60  E-value=0.0041  Score=44.01  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5899999999999999999999999999964

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.59  E-value=0.0048  Score=42.86  Aligned_cols=32  Identities=31%  Similarity=0.311  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|.|..|..+|..|...|.+|+++|+++
T Consensus       214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp  245 (425)
T PRK05476        214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP  245 (425)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            48999999999999999999999999999865

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.59  E-value=0.0063  Score=39.12  Aligned_cols=31  Identities=35%  Similarity=0.502  Sum_probs=27.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      +|+|+|.|..|..+|..|++.|. +++++|.+
T Consensus        26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            68999999999999999999987 67888874

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.59  E-value=0.0053  Score=39.10  Aligned_cols=31  Identities=29%  Similarity=0.573  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc---EEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD---VVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~---v~v~E~~   32 (130)
                      .++|+|+|.+|..+|..|.+.|.+   +.+++|+
T Consensus        27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            589999999999999999999975   9999986

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.59  E-value=0.0064  Score=40.49  Aligned_cols=32  Identities=38%  Similarity=0.684  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|.|||+|..|...|+.++..|. +|+++|...
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            58999999999999999999876 899999743

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.58  E-value=0.0065  Score=40.74  Aligned_cols=33  Identities=27%  Similarity=0.546  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~   34 (130)
                      .|.|||+|..|...|+.++..|+ +++++|.++.
T Consensus         8 KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          8 KISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            58999999999999999999996 8999997654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.58  E-value=0.0061  Score=38.13  Aligned_cols=31  Identities=39%  Similarity=0.631  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||.|..|..+|..|++.|. +++++|.+
T Consensus        23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            58999999999999999999998 89999875

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08328 hypothetical protein; Provisional

Probab=96.56  E-value=0.0067  Score=38.75  Aligned_cols=31  Identities=42%  Similarity=0.637  Sum_probs=27.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|++.|. +++++|.+
T Consensus        29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            58999999999999999999998 68888764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.55  E-value=0.0069  Score=39.56  Aligned_cols=32  Identities=31%  Similarity=0.514  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|.|..|..+|..|++.|. +++++|.+.
T Consensus        32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            58999999999999999999995 899999754

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.55  E-value=0.0045  Score=40.78  Aligned_cols=32  Identities=34%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|..|...|..|.+.|++|+++++++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            47899999999999999999999999999864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.55  E-value=0.0065  Score=39.17  Aligned_cols=31  Identities=39%  Similarity=0.470  Sum_probs=27.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      +|+|||.|..|..+|..|++.|. +++++|.+
T Consensus        34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            68999999999999999999997 78888764

>PLN02494 adenosylhomocysteinase

Probab=96.53  E-value=0.006  Score=42.83  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|.|..|..+|..+...|.+|+++|+++.
T Consensus       256 tVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        256 VAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            589999999999999999999999999998653

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.53  E-value=0.0042  Score=46.01  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=30.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||+|.-|...|+.++..|++|+++|.++.
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            478999999999999999999999999998653

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.52  E-value=0.0035  Score=41.30  Aligned_cols=31  Identities=29%  Similarity=0.517  Sum_probs=25.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-------CcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-------VDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-------~~v~v~E~   31 (130)
                      .+|+|||+|..||++|..+.+..       .+|+|++-
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D   41 (342)
T KOG3923|consen    4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD   41 (342)
T ss_pred             ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence            47999999999999998777743       57888853

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.52  E-value=0.0048  Score=43.92  Aligned_cols=33  Identities=45%  Similarity=0.622  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++.
T Consensus         9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            478999999999999999999999999998653

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.51  E-value=0.005  Score=44.31  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +++|+|.|..|...|..|.+.|.+++++|+++.
T Consensus       419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            479999999999999999999999999999764

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.51  E-value=0.0071  Score=39.94  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~   33 (130)
                      .++|+|+|-+|.++|..|++.|.+ |+|+.|+.
T Consensus       128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            478999999999999999999996 99998853

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.48  E-value=0.0056  Score=40.80  Aligned_cols=33  Identities=36%  Similarity=0.521  Sum_probs=29.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ..|.|+|+|..|...|+.|++.|.+|+++-|++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            368999999999999999999998888886654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.45  E-value=0.0094  Score=37.61  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|++.|.. ++++|.+
T Consensus        30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            589999999999999999999984 8899875

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.44  E-value=0.0032  Score=40.83  Aligned_cols=33  Identities=30%  Similarity=0.552  Sum_probs=27.3

Q ss_pred             EEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 037740            3 VAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL   35 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~   35 (130)
                      .+|+|||+||.+||-.|+..  ..+++++...+.+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            58999999999999999986  5688888765543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.43  E-value=0.0072  Score=42.41  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|+|||+|..|+-+|..|.+.|. +|+++++.+
T Consensus       275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            58999999999999999999988 899998743

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.43  E-value=0.0051  Score=42.73  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-----CCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-----GVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-----g~~v~v~E~~~   33 (130)
                      +|++|||+|++|+-+|+.++..     .+.+.++|+..
T Consensus        19 ~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~   56 (486)
T COG2509          19 LDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGL   56 (486)
T ss_pred             cceEEECCCchHHHHHHHHhhhcccCCceEEEEEEecc
Confidence            6899999999999999999964     57889998743

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.42  E-value=0.0053  Score=45.45  Aligned_cols=32  Identities=34%  Similarity=0.523  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|+.++..|++|+++|.++
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            48899999999999999999999999999764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.42  E-value=0.0082  Score=38.75  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|+|..+...|..+...|++|+|+|.++.
T Consensus       102 ~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       102 HVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            579999999999999999999999999986543

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.42  E-value=0.0066  Score=40.26  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=28.0

Q ss_pred             EEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      |.|||+|..|...|..++..++ +|+++|.++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999998876 999999865

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.42  E-value=0.0062  Score=41.92  Aligned_cols=31  Identities=23%  Similarity=0.477  Sum_probs=27.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|-.|+..|..++. |++|+++|+++
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            68899999999999988775 99999999764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.41  E-value=0.0068  Score=42.78  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=28.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~   33 (130)
                      ++|.|||.|-.|+..|..|++.  |++|+.+|.++
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            4689999999999999999998  47899998653

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.39  E-value=0.018  Score=39.63  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      +|++.||-||+-|+.|+.|...+ .+++.+||.+
T Consensus         6 ~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp   39 (436)
T COG3486           6 LDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP   39 (436)
T ss_pred             eeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence            59999999999999999999874 7899999865

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.36  E-value=0.01  Score=37.84  Aligned_cols=31  Identities=39%  Similarity=0.504  Sum_probs=27.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||.|..|...|..|++.|. +++++|.+
T Consensus        23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            68999999999999999999998 67888764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.36  E-value=0.0087  Score=41.60  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHH--------------CCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAK--------------AGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~--------------~g~~v~v~E~~~~~   35 (130)
                      +++|||+|++|+-.|..|+.              .+.+|+++|+.+.+
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            58999999999999999876              36889999986554

>PRK08223 hypothetical protein; Validated

Probab=96.33  E-value=0.01  Score=39.15  Aligned_cols=31  Identities=26%  Similarity=0.386  Sum_probs=28.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||.|-.|..+|..|++.|. +++++|.+
T Consensus        29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            68999999999999999999998 67888864

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.32  E-value=0.011  Score=39.66  Aligned_cols=32  Identities=31%  Similarity=0.558  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|+.++..| .+++++|.+.
T Consensus         7 KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          7 KISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            6899999999999999999988 5888999754

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.31  E-value=0.0081  Score=42.40  Aligned_cols=31  Identities=39%  Similarity=0.613  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|+|.|.+|+++|..|.+.|.+|++.|++
T Consensus        17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         17 RVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4899999999999999999999999999974

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.0086  Score=41.56  Aligned_cols=32  Identities=38%  Similarity=0.475  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||-|.+|+++|..|.+.|.+|++.|++.
T Consensus         5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          5 RVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             eEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999999999999999999999999754

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.29  E-value=0.0087  Score=44.63  Aligned_cols=32  Identities=31%  Similarity=0.542  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~   33 (130)
                      +|+|||+|.+|+-+|..+.+.|.+ |+++++.+
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            589999999999999999999987 99998754

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.29  E-value=0.009  Score=41.80  Aligned_cols=31  Identities=26%  Similarity=0.487  Sum_probs=28.6

Q ss_pred             EEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|+|-|.+|+++|..|.+.|++|.+.|...
T Consensus         9 ~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          9 HIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             EEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            7899999999999999999999999999643

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.29  E-value=0.0079  Score=42.03  Aligned_cols=34  Identities=38%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .|+|+|-|.+|+++|..|.+.|.+|++.|..+..
T Consensus         9 kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           9 KVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             EEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            5899999999999999999999999999965544

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.28  E-value=0.011  Score=36.56  Aligned_cols=31  Identities=39%  Similarity=0.669  Sum_probs=28.1

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .++|+|+ |..|..++..|.+.|.+|+++.|+
T Consensus        30 ~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          30 TAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4889996 999999999999999999999875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.28  E-value=0.0084  Score=42.27  Aligned_cols=31  Identities=26%  Similarity=0.048  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|+|.|.+|.++|..|.+.|.+|++.|.+
T Consensus        10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690         10 RVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             EEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            5899999999999999999999999999954

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.27  E-value=0.011  Score=38.67  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|.+|.+.+..|.+.|.+|.+++|+.
T Consensus       119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       119 RVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999999999999999999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.27  E-value=0.011  Score=37.50  Aligned_cols=30  Identities=30%  Similarity=0.495  Sum_probs=27.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .|+|||||..++.-+..|.+.|.+|+|+-+
T Consensus        27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap   56 (223)
T PRK05562         27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSK   56 (223)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            589999999999999999999999999954

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.27  E-value=0.0091  Score=41.72  Aligned_cols=33  Identities=36%  Similarity=0.561  Sum_probs=30.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +++|+|+|..|...+..|.+.|.+|+++|+++.
T Consensus       233 ~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        233 RVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            489999999999999999999999999998753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.26  E-value=0.015  Score=35.56  Aligned_cols=33  Identities=33%  Similarity=0.432  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||.|-.|...|..|...|.+|..+++...
T Consensus        38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred             EEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence            588999999999999999999999999998654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.25  E-value=0.011  Score=38.79  Aligned_cols=32  Identities=31%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|+|+|-++.++++.|.+.|. ++.|+.|+.
T Consensus       124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  156 (272)
T PRK12550        124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE  156 (272)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            48999999999999999999987 599998864

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.23  E-value=0.0073  Score=44.90  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|+.++..|++|+++|.++
T Consensus       337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            48899999999999999999999999999764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.23  E-value=0.0087  Score=39.80  Aligned_cols=32  Identities=28%  Similarity=0.476  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||.|..|.+.|..|.+.|.  +|.++++++
T Consensus         8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            58899999999999999999985  899998864

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=96.22  E-value=0.012  Score=37.91  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-----------CcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-----------VDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-----------~~v~v~E~~   32 (130)
                      .+|+|||+|-.|..++..|++.|           .+++++|.+
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D   54 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD   54 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence            36899999999999999999963           388999874

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.22  E-value=0.014  Score=37.43  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|||+|..|...+..|+..|. +++++|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999998 688888753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.22  E-value=0.016  Score=30.98  Aligned_cols=30  Identities=40%  Similarity=0.576  Sum_probs=27.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHC-CCcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKA-GVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~   31 (130)
                      +++|+|.|..|..++..+.+. +.++.++++
T Consensus        25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            578999999999999999998 678889987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.20  E-value=0.014  Score=39.07  Aligned_cols=32  Identities=25%  Similarity=0.616  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|...+.  +++++|.+.
T Consensus         8 ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          8 KVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            68999999999999999999887  799999754

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.18  E-value=0.013  Score=38.60  Aligned_cols=32  Identities=28%  Similarity=0.451  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|+|+|-++.++++.|.+.|. ++.|+.|+.
T Consensus       129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  161 (283)
T PRK14027        129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            47999999999999999999987 688998753

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.17  E-value=0.011  Score=39.04  Aligned_cols=32  Identities=38%  Similarity=0.570  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|..|...|..+.+.|++|.++++++
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            58899999999999999999999999999864

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.17  E-value=0.011  Score=39.19  Aligned_cols=33  Identities=39%  Similarity=0.509  Sum_probs=30.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+|.|||.|.-|.+.|..|.+.|++|.++++++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~   33 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ   33 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999999999999999864

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.17  E-value=0.015  Score=38.82  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|...+.  +++++|.+.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   34 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            48999999999999999998876  699999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.16  E-value=0.013  Score=41.23  Aligned_cols=32  Identities=34%  Similarity=0.333  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|||.|..|..+|..|...|.+|+++|+++
T Consensus       256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp  287 (476)
T PTZ00075        256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDP  287 (476)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999999999999999999999998764

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.15  E-value=0.014  Score=38.49  Aligned_cols=32  Identities=31%  Similarity=0.523  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|||+|-++.++++.|.+.|. +++|+.|+.
T Consensus       127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            48999999999999999999997 699998853

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.14  E-value=0.012  Score=39.07  Aligned_cols=32  Identities=28%  Similarity=0.370  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|.+.|..|.+.|++|+++++++
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68899999999999999999999999999864

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.14  E-value=0.011  Score=42.00  Aligned_cols=32  Identities=34%  Similarity=0.401  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|+|.|.+|+++|..|.+.|++|.+.|...
T Consensus         9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          9 MVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            48899999999999999999999999999643

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.11  E-value=0.015  Score=38.26  Aligned_cols=32  Identities=16%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      .++|+|+|-+|.+++..|...| .+|+|+.|+.
T Consensus       125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        125 RILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4789999999999999999999 6899998853

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.10  E-value=0.0096  Score=44.13  Aligned_cols=32  Identities=41%  Similarity=0.645  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHH-HCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLA-KAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~-~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..++ ..|+.|+++|.++
T Consensus       311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            4889999999999999999 8899999999854

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.09  E-value=0.01  Score=43.86  Aligned_cols=32  Identities=38%  Similarity=0.574  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHH-HCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLA-KAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~-~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..++ +.|++|+++|.++
T Consensus       306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            4889999999999999998 5899999999865

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.09  E-value=0.017  Score=38.70  Aligned_cols=32  Identities=31%  Similarity=0.575  Sum_probs=28.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|...+.  +++++|.+.
T Consensus         5 Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           5 KVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            68999999999999999998876  689998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.08  E-value=0.011  Score=43.14  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|+|.|..|...|..|.+.|.+++++|+++.
T Consensus       402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (621)
T PRK03562        402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD  434 (621)
T ss_pred             cEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence            589999999999999999999999999998764

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.06  E-value=0.013  Score=41.95  Aligned_cols=31  Identities=32%  Similarity=0.451  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .++|+|+|.+|.++++.|++.|.+|.++.|+
T Consensus       381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~  411 (529)
T PLN02520        381 LFVVIGAGGAGKALAYGAKEKGARVVIANRT  411 (529)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3789999999999999999999999999874

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.04  E-value=0.0092  Score=37.97  Aligned_cols=34  Identities=32%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .|.|||+|.-|.-.|...+..|+.|.+++++...
T Consensus        13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen   13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             ceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            4889999999999999999999999999987543

>PRK06153 hypothetical protein; Provisional

Probab=96.01  E-value=0.013  Score=40.21  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=28.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||.|-.|..++..|++.|. +++++|.+
T Consensus       178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             cEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            58999999999999999999987 78888865

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.01  E-value=0.018  Score=39.20  Aligned_cols=31  Identities=39%  Similarity=0.609  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||.|..|..+|..|++.|. +++++|.+
T Consensus        30 ~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         30 KVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            58999999999999999999998 68888875

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.01  E-value=0.018  Score=36.80  Aligned_cols=31  Identities=39%  Similarity=0.488  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|+|.|..|..+|..|++.|. +++++|.+
T Consensus        13 ~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          13 HVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            58999999999999999999998 78898874

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.00  E-value=0.013  Score=42.60  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|+|.|..|...|..|.+.|.+++++|+|+.
T Consensus       402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (601)
T PRK03659        402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDIS  434 (601)
T ss_pred             CEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence            589999999999999999999999999998764

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.00  E-value=0.018  Score=38.26  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=27.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      +|+|||+|..|...|..|+..|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58999999999999999999998 67888764

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.00  E-value=0.012  Score=41.37  Aligned_cols=32  Identities=25%  Similarity=0.300  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHH-HHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLA-SAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~-~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||.|-+|++ +|..|.+.|++|.+.|...
T Consensus         9 ~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~   41 (461)
T PRK00421          9 RIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE   41 (461)
T ss_pred             EEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence            4799999999999 6999999999999999754

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.98  E-value=0.019  Score=38.73  Aligned_cols=32  Identities=34%  Similarity=0.486  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|..|.+.|..|...|.+|.++++++
T Consensus       148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~  179 (330)
T PRK12480        148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYP  179 (330)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            47899999999999999999999999999754

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.97  E-value=0.018  Score=39.39  Aligned_cols=31  Identities=39%  Similarity=0.556  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|++.|. +++++|.+
T Consensus        43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            58999999999999999999997 78898875

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.96  E-value=0.023  Score=35.47  Aligned_cols=31  Identities=29%  Similarity=0.487  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||.|..|..+|..|+..|. +++++|.+
T Consensus        21 ~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          21 KVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            58999999999999999999998 58899875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=95.95  E-value=0.018  Score=39.05  Aligned_cols=30  Identities=33%  Similarity=0.409  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC--------CcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKAG--------VDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g--------~~v~v~E~   31 (130)
                      +|.|||+|.-|.+.|..|++++        ++|.++.+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~   38 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF   38 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence            5889999999999999999999        89999977

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.94  E-value=0.014  Score=41.01  Aligned_cols=31  Identities=42%  Similarity=0.620  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|.|||.|-+|+++|..|.+.|++|.+.|..
T Consensus        11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390         11 TVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            4789999999999999999999999999864

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.94  E-value=0.026  Score=35.23  Aligned_cols=31  Identities=19%  Similarity=0.278  Sum_probs=28.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||.|..|...|..|+..|. +++++|.+
T Consensus        23 ~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          23 RILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             cEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            58999999999999999999998 58899874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.93  E-value=0.02  Score=33.98  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      .++|||+|..|.+.+..|.+.| .++.+++++.
T Consensus        21 ~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          21 KVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            4789999999999999999985 7899998754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=95.92  E-value=0.016  Score=39.77  Aligned_cols=32  Identities=31%  Similarity=0.474  Sum_probs=29.3

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.||| .|.-|.+.|..|.++|++|.++++++
T Consensus       100 ~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199        100 PVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             eEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            488999 89999999999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
2yg6_A	453	Structure-Based Redesign Of Cofactor Binding In Put		8e-08
1sez_A	504	Crystal Structure Of Protoporphyrinogen Ix Oxidase		1e-07
3rha_A	482	The Crystal Structure Of Oxidoreductase From Arthro		2e-07
2yg5_A	453	Structure-Based Redesign Of Cofactor Binding In Put		5e-07
2yg3_A	453	Structure-Based Redesign Of Cofactor Binding In Put		6e-07
2yg7_A	453	Structure-Based Redesign Of Cofactor Binding In Put		6e-07
2z5y_A	513	Crystal Structure Of Human Monoamine Oxidase A (G11		4e-06
2z5x_A	513	Crystal Structure Of Human Monoamine Oxidase A With		4e-06
2bxr_A	527	Human Monoamine Oxidase A In Complex With Clorgylin		4e-06
2ivd_A	478	Structure Of Protoporphyrinogen Oxidase From Myxoco		2e-05
4e0v_A	497	Structure Of L-Amino Acid Oxidase From The B. Jarar		9e-05
2vou_A	397	Structure Of 2,6-dihydroxypyridine-3-hydroxylase Fr		9e-05
1o5w_A	534	The Structure Basis Of Specific Recognitions For Su		1e-04
2xaf_A	852	Crystal Structure Of Lsd1-Corest In Complex With Pa		1e-04
2x0l_A	734	Crystal Structure Of A Neuro-Specific Splicing Vari		1e-04
2ejr_A	662	Lsd1-Tranylcypromine Complex Length = 662		1e-04
2dw4_A	660	Crystal Structure Of Human Lsd1 At 2.3 A Resolution		1e-04
2v1d_A	730	Structural Basis Of Lsd1-Corest Selectivity In Hist		1e-04
2iw5_A	666	Structural Basis For Corest-dependent Demethylation		1e-04
2hko_A	664	Crystal Structure Of Lsd1 Length = 664		1e-04
2h94_A	664	Crystal Structure And Mechanism Of Human Lysine-Spe		1e-04
4dgk_A	501	Crystal Structure Of Phytoene Desaturase Crti From		2e-04
1reo_A	486	L-Amino Acid Oxidase From Agkistrodon Halys Pallas		3e-04
3kve_A	486	Structure Of Native L-Amino Acid Oxidase From Viper		3e-04
1b37_A	472	A 30 Angstrom U-Shaped Catalytic Tunnel In The Crys		5e-04
3kpf_A	478	X-Ray Structure Of The Mutant Lys300met Of Polyamin		5e-04

>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: P15i-A394c Double Mutant Length = 453

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          VA++G GISGLA+A  L KAG+ V + E  D +GG   T TIDG  L++G
Sbjct: 8  VAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57

>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase Length = 504

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           +VAVIG G+SGLA+A+ L   G++V ++E E   GG  ++++ DG+  D G      +  
Sbjct: 15  RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTXTESEG 74
Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGT------------RNGFSSLFAQKKN 109
             T    DSLG+  K     F +S +K      GT            ++ F S  ++ + 
Sbjct: 75  DVTF-LIDSLGLREKQ---QFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQX 130
Query: 110 LLNPYFWQ 117
           LL P  W+
Sbjct: 131 LLEPILWK 138

>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter Aurescens Length = 482

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V ++G G SGL +A  L KAG+ V + E  D +GG   T TIDG  L++G        SP
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIG----GQWVSP 65
Query: 63 NT---MEFFDSLGVDMKS 77
          +    ME  D LG+ M S
Sbjct: 66 DQTVLMELLDELGLKMYS 83

>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c Mutant Length = 453

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          VA++G G SGLA+A  L KAG+ V + E  D +GG   T TIDG  L++G
Sbjct: 8  VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57

>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: Wild Type Enzyme Length = 453

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          VA++G G SGLA+A  L KAG+ V + E  D +GG   T TIDG  L++G
Sbjct: 8  VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57

>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant Length = 453

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          VA++G G SGLA+A  L KAG+ V + E  D +GG   T TIDG  L++G
Sbjct: 8  VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57

>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a) With Harmine Length = 513

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
          V VIGGGISGL++A +L + GV V++ E  D +GG   TI  + VD +D+G
Sbjct: 5  VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 55

>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With Harmine Length = 513

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
          V VIGGGISGL++A +L + GV V++ E  D +GG   TI  + VD +D+G
Sbjct: 5  VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 55

>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline, Crystal Form A Length = 527

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
          V VIGGGISGL++A +L + GV V++ E  D +GG   TI  + VD +D+G
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 66

>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus Xanthus With Acifluorfen Length = 478

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          M VAV+GGGISGLA A  L   G D VL E    LGG   T  + G  ++ G
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQG 68

>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu Venom Length = 497

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
          +V ++G G+SGL++A+VLA AG  V + E  +  GG  KT
Sbjct: 48 RVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKT 87

>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From Arthrobacter Nicotinovorans Length = 397

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKE-DSLGGHAKTITID----GVDLDLGFTLF 56
          ++AV+GG ISGL +A +L  AGVDV +YE+    L G    I +        L+ G  L 
Sbjct: 7  RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELD 66
Query: 57 NHATSPNTMEFFDSL 71
          + +   ++ME+ D+L
Sbjct: 67 SISVPSSSMEYVDAL 81

>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For Substrates And Inhibitors Of Rat Monoamine Oxidase A Length = 534

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
          V VIGGGISGLA+A +L++  ++V++ E  D +GG   T+  + V  +D+G
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVG 74

>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 852

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 330

>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of Human Histone Lysine Demethylase Lsd1 Length = 734

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 208

>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex Length = 662

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159

>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution Length = 660

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159

>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 730

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 208

>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 666

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 160

>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1 Length = 664

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159

>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific Demethylase-1 Length = 664

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159

>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea Ananatis Length = 501

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 5  VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNT 64
          VIG G  GLA A  L  AG+ V+L E+ D  GG A      G   D G T+    T P+ 
Sbjct: 6  VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVI---TDPSA 62
Query: 65 ME 66
          +E
Sbjct: 63 IE 64

>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas Length = 486

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD 48
           V V+G G+SGL++A+VL+ AG  V + E  +  GG  +T   D  D
Sbjct: 35 HVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRNDKED 81

>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera Ammodytes Ammodytes: Stabilization Of The Quaternary Structure By Divalent Ions And Structural Changes In The Dynamic Active Site Length = 486

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
           V V+G G+SGL++A+VLA AG  V + E  +  GG  +T
Sbjct: 35 HVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRT 74

>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal Structure Of Polyamine Oxidase Length = 472

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2  QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          +V V+G G+SG+++A  L++AG+ D+++ E  D +GG        G++++LG
Sbjct: 6  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELG 57

>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase From Zea Mays Length = 478

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2  QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          +V V+G G+SG+++A  L++AG+ D+++ E  D +GG        G++++LG
Sbjct: 6  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELG 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-33
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	4e-21
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	3e-20
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	5e-20
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	7e-19
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	4e-18
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	5e-18
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-15
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	9e-15
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-14
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	7e-14
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	1e-13
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	2e-13
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	2e-13
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	7e-13
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	7e-13
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-12
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-11
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	2e-11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	2e-11
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	4e-11
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	5e-11
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	6e-11
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	8e-11
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	9e-11
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-10
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	2e-10
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	2e-10
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	3e-10
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	4e-10
3dme_A	369	Conserved exported protein; structural genomics, P	5e-10
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	7e-10
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	8e-10
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	8e-10
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-09
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	1e-09
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	3e-09
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	4e-09
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	4e-09
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	4e-09
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	4e-09
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	5e-09
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	6e-09
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	6e-09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	7e-09
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	8e-09
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	8e-09
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	9e-09
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	9e-09
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	9e-09
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-08
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	2e-08
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	2e-08
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	2e-08
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	2e-08
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	3e-08
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	3e-08
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	3e-08
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	4e-08
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	5e-08
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	1e-07
3atr_A	453	Conserved archaeal protein; saturating double bond	1e-07
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	1e-07
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	1e-07
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	2e-07
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	3e-07
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	3e-07
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	4e-07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	4e-07
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	4e-07
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	5e-07
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	6e-07
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	6e-07
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	2e-06
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	2e-06
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	2e-06
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	2e-06
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	6e-06
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	6e-06
4fk1_A	304	Putative thioredoxin reductase; structural genomic	7e-06
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	9e-06
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-05
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	1e-05
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	1e-05
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	2e-05
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	3e-05
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	3e-05
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	6e-05
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	6e-05
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	9e-05
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	1e-04
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	1e-04
2bry_A	497	NEDD9 interacting protein with calponin homology a	1e-04
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	2e-04
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	2e-04
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	3e-04
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	3e-04
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	4e-04
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	4e-04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	4e-04
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	4e-04
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	5e-04
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	5e-04
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	5e-04
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	7e-04
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	8e-04

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score =  120 bits (302), Expect = 1e-33
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 3   VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           +A+IG G +GLA+   L +AG  D  + E+ D +GG   +    G   ++G  +    + 
Sbjct: 9   IAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-SY 67

Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRN----GFSSLFAQKKNLLNPYFWQ 117
               E  D  G  +    +      + G+ +             +   +   LL   +  
Sbjct: 68  DTIQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQG 127

Query: 118 MLWEI 122
                
Sbjct: 128 YDANG 132

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 86.6 bits (214), Expect = 4e-21
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
          M VAV+GGGISGLA A  L   G D VL E    LGG   T  + G  ++ G   F    
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF-LDR 75

Query: 61 SPNTMEFFDSLGVDMK 76
           P T     +L ++ +
Sbjct: 76 EPATRALAAALNLEGR 91

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 84.0 bits (207), Expect = 3e-20
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          VAVIG G+SGLA+A+ L   G++V ++E E   GG  ++++ DG+  D G       +  
Sbjct: 16 VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTM-TESEG 74

Query: 63 NTMEFFDSLGVD 74
          +     DSLG+ 
Sbjct: 75 DVTFLIDSLGLR 86

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 83.2 bits (205), Expect = 5e-20
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 3   VAVIGGGISGLASAFVLAKAGVD--VVLYEKEDSLGGHAKTI-TIDGVDLDLG--FTLFN 57
           V V+GGGISGLA+++ L++A     VVL E  + LGG  +++   +G   +LG       
Sbjct: 5   VVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPA 64

Query: 58  HATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTR-----NGFSSLFAQKKNLLN 112
            A    T+     LG+D +   +       + +    G        G   L         
Sbjct: 65  GALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSK 124

Query: 113 PYFWQMLWEINKFKD 127
           P FW  L E+ K + 
Sbjct: 125 PLFWAGLRELTKPRG 139

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 80.1 bits (197), Expect = 7e-19
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 3  VAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKTITIDGVDLDLGF-TLFNHA 59
          + ++GGGI+GLA+A+   +A   +++ L E  + LGG   T   DG  ++ G  +    A
Sbjct: 7  LVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYV--A 64

Query: 60 TSPNTMEFFDSLGVD 74
                +  +++G+ 
Sbjct: 65 RKHILTDLIEAIGLG 79

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 78.1 bits (192), Expect = 4e-18
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 3  VAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGGHAKTITIDGVDLDLGF-TL 55
          V +IGGGI+GLA+AF + K        +++ L E    +GG  +T+  DG  ++ G  + 
Sbjct: 8  VVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSF 67

Query: 56 FNHATSPNTMEFFDSLGVD 74
                 +  +    LG++
Sbjct: 68 L--ERKKSAPQLVKDLGLE 84

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 77.4 bits (191), Expect = 5e-18
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT-LFNHA 59
          M+  V+G G+ GL +   LA+ G ++++ EK   +GG    +   G  L  G   +  H 
Sbjct: 1  MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHG 60

Query: 60 TSPNTMEFFDSLGVDMK 76
                     LG  ++
Sbjct: 61 EDGPLAHLLRILGAKVE 77

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT-LFNHA 59
           M+  VIG G+ GL SA  L+KAG +V ++E+    GG    ++  G  L  G   +  + 
Sbjct: 1   MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNG 60

Query: 60  TSPNTMEFFDSLG--VDMKSSDMS-FSVSLDKG-----QGFEWGTRNGFSSLFA 105
                  F   +   V++  S+M+   V L KG     +GF+  + N F SL +
Sbjct: 61  PGGPLACFLKEVEASVNIVRSEMTTVRVPLKKGNPDYVKGFKDISFNDFPSLLS 114

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 68.4 bits (166), Expect = 9e-15
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 3   VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKT-ITIDGVDLDLGFTLFNHAT 60
           + +IG G +GL +A  L + G  +  LYE  D+ GG +++ +  +G   DLG  +   + 
Sbjct: 12  IVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVI-FSH 70

Query: 61  SPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSL-FAQKKNLLNPYFWQML 119
                +  D             S    +G+   +  +N    L    +K  L+       
Sbjct: 71  YQYFDDVMDWAVQGWNVLQ-RESWVWVRGRWVPYPFQNNIHRLPEQDRKRCLDELVRSHA 129

Query: 120 WEINK 124
               +
Sbjct: 130 RTYTE 134

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 66.8 bits (162), Expect = 3e-14
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 1   MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGHAKT-ITIDGVDLDLGFTLFNH 58
           + V VIG G +GL +A  L +  G   ++ +  ++ GG A T +T +G   D+G  +   
Sbjct: 11  VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI-F 69

Query: 59  ATSPNTMEFFDSLG--VDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFW 116
           +      +  D      D   +    S    +GQ   +  +N  S L  +++        
Sbjct: 70  SHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMI 129

Query: 117 QMLWEINKFKDD 128
               E       
Sbjct: 130 DAALEARVANTK 141

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 66.1 bits (161), Expect = 7e-14
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--GVDLDLGFTLFNHAT 60
           V ++G G++GL++A+VLA AG  V + E  +  GG  +T   +  G   +LG        
Sbjct: 36  VVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPM-RLPEK 94

Query: 61  SPNTMEFFDSLGVDM 75
                E+     + +
Sbjct: 95  HRIVREYIRKFDLRL 109

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
           VA++G G SGLA+A  L KAG+ V + E  D +GG   T TIDG  L++G          
Sbjct: 8   VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV-SPDQT 66

Query: 63  NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEI 122
             +   D LG+                 G                K  ++    +M    
Sbjct: 67  ALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLA 126

Query: 123 NKFKDDA 129
            +   + 
Sbjct: 127 AQIGAEE 133

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 17/135 (12%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
           V V+GGG +GL SAF L KAG  V + E     GG   T      + DL         S 
Sbjct: 14  VVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSE 73

Query: 63  N---------------TMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQK 107
                           T+++   LGV+++      + +    Q     + +G S  +   
Sbjct: 74  GHFYNVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFVNYQS--DTSLSGQSVTYRAA 131

Query: 108 KNLLNPYFWQMLWEI 122
           K     Y  ++L + 
Sbjct: 132 KADTFGYMSELLKKA 146

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 27/127 (21%), Positives = 44/127 (34%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG  +      
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 168

Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWE 121
                    + +++        +    GQ             F +     +    Q+ + 
Sbjct: 169 NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFN 228

Query: 122 INKFKDD 128
           +   K  
Sbjct: 229 VLNNKPV 235

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 63.1 bits (152), Expect = 7e-13
 Identities = 27/128 (21%), Positives = 45/128 (35%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           +V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG  +      
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 339

Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWE 121
                    + +++        +    GQ             F +     +    Q+ + 
Sbjct: 340 NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFN 399

Query: 122 INKFKDDA 129
           +   K  +
Sbjct: 400 VLNNKPVS 407

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT---IDGVDLDLGFTLFNHA 59
             V+GGG SGL +A  L  AG  V+L E  + LGG A +     + G+ +++G    +  
Sbjct: 4   AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63

Query: 60  TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQML 119
             P      D  G+   ++   F+    +                A           +  
Sbjct: 64  HHPRLAAELDRYGIPTAAAS-EFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDA 122

Query: 120 WEIN 123
             I+
Sbjct: 123 HRID 126

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           +AV+G G +GLA A   A  G  V L++    +GG
Sbjct: 376 LAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG 410

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           V ++G G SG  +A VL ++G  V L +  + +GG
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG 426

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 18/36 (50%), Positives = 20/36 (55%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
           V V+G G SGL +A  L   G DVVL E    LGG 
Sbjct: 394 VLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGR 429

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATS 61
          V V+GGGISG+A+A +L  +G++VV+ E  D +GG   T+       +DLG +     T 
Sbjct: 7  VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ 65

Query: 62 PNTMEFFDSLGVDM 75
             +     LG++ 
Sbjct: 66 NRILRLAKELGLET 79

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 57.7 bits (138), Expect = 5e-11
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYE-KEDSLGGHAKTITIDGVDLDLGFTLFNHA- 59
           ++ ++G GI+GL +  +L +AG DV + E   + +GG  KT      +         +A 
Sbjct: 46  RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAE 105

Query: 60  --------TSPNTMEFFDSLGVDMK 76
                     P T+   D LG+  +
Sbjct: 106 AGAMRLPSFHPLTLALIDKLGLKRR 130

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 57.6 bits (139), Expect = 6e-11
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
           V VIGGG  GL +   L  AG   +L E  D +GG + +  IDG   ++G T + H    
Sbjct: 42  VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGT-WVHWHQS 100

Query: 63  NTMEFFDSLGVD 74
           +         + 
Sbjct: 101 HVWREITRYKMH 112

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 16/74 (21%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
          M+  VIG GI GL++A  L ++G+D  +YE    +          G       ++     
Sbjct: 24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP-------VGA----AISV----- 67

Query: 61 SPNTMEFFDSLGVD 74
           PN ++    LG+ 
Sbjct: 68 WPNGVKCMAHLGMG 81

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 57.0 bits (137), Expect = 9e-11
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGV 47
            ++G G+ G   A  L K    V++ EK + +GG+A T   +G+
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGI 48

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 3  VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLG 52
          V V+G G+SG+++A  L++AG+ D+++ E  D +GG        G++++LG
Sbjct: 7  VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELG 57

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 15/77 (19%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           ++AV+GG ISGL +A +L  AGVDV +YE+        + ++  G  + +         
Sbjct: 6  DRIAVVGGSISGLTAALMLRDAGVDVDVYER------SPQPLSGFGTGIVV--------- 50

Query: 61 SPNTMEFFDSLGVDMKS 77
           P  + +    GV++ S
Sbjct: 51 QPELVHYLLEQGVELDS 67

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 30/124 (24%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKE----DSLGGHAKTITIDGVDLDLGFTLFN 57
           +VA+IGGG +G  +   L K G DV +YE+       +G        + +          
Sbjct: 25  KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG--------ESL---------- 66

Query: 58  HATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNG---FSSLFAQKKNLLNPY 114
               P TM   + LG+  K    ++         F WG       FS    +    +  +
Sbjct: 67  ---LPGTMSILNRLGLQEKIDAQNYVKK--PSATFLWGQDQAPWTFSFAAPKVAPWVFDH 121

Query: 115 FWQM 118
             Q+
Sbjct: 122 AVQV 125

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 20/75 (26%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG--GHAKTITIDGVDLDLGFTLFNH 58
           +  V GGG +GL +A  L + G DV L+EK   L   G    I +              
Sbjct: 12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAG--IYL-------------- 55

Query: 59 ATSPNTMEFFDSLGV 73
              N +   + LG 
Sbjct: 56 --WHNGLRVLEGLGA 68

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 16/72 (22%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V V+G G+ GL++A  LA+ GV V++ E+   L  + +                    +
Sbjct: 7  DVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRA----------------AGQN 50

Query: 62 PNTMEFFDSLGV 73
          P TME     GV
Sbjct: 51 PRTMELLRIGGV 62

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 54.8 bits (133), Expect = 5e-10
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
            VIG G+ GLA A  LA  G +V++ E  + +G   
Sbjct: 7  CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGT 43

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 54.4 bits (132), Expect = 7e-10
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
           V VIG G +GLA+A  L   G +V +Y++ D +GG
Sbjct: 125 VGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 54.1 bits (131), Expect = 8e-10
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
            VIGGGI G A A+ LAK   +  L+E    +GG  
Sbjct: 20 AVVIGGGIIGSAIAYYLAKENKNTALFESGT-MGGRT 55

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 16/72 (22%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V ++GGG  G+A A  LA   V  ++ E+ D    H +                     
Sbjct: 28 DVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRV----------------GTIG 71

Query: 62 PNTMEFFDSLGV 73
          P +ME F   GV
Sbjct: 72 PRSMELFRRWGV 83

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          + V VIGGG SGL++ + L ++G+  V+ + E S GG
Sbjct: 4  VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 16/72 (22%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V V+G G +G+  A  L  AGV+VV+ E+     G ++ +                  +
Sbjct: 13 AVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGF----------------T 56

Query: 62 PNTMEFFDSLGV 73
            TME FD  G+
Sbjct: 57 ARTMEVFDQRGI 68

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 16/72 (22%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V V+G G +GL  A  L   GVDV++ E+     G ++ +                   
Sbjct: 14 SVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFT---------------- 57

Query: 62 PNTMEFFDSLGV 73
            TME FD  G+
Sbjct: 58 ARTMEVFDQRGI 69

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 52.4 bits (125), Expect = 4e-09
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDG 46
            ++G G +G   A  LA +G  V++ ++   +GG+A     D 
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDA 75

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG----GHAKTI 42
          ++ VIGGGI G+  A  LAK G +V + EK   +G        T 
Sbjct: 7  EIVVIGGGIVGVTIAHELAKRGEEVTVIEK-RFIGSGSTFRCGTG 50

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 16/72 (22%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
            V V+GGG  GL  A  L   GV  ++ EK     GH +   +                 
Sbjct: 51  DVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGAL----------------H 94

Query: 62  PNTMEFFDSLGV 73
             T+E  D  G+
Sbjct: 95  IRTVETLDLRGL 106

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKE----DSLGGHAKTITIDGV--DLDLGFTLF 56
           + VIGGG  G   A  +A  G  V+L E+E      +G      T+ G+   L L   + 
Sbjct: 10  LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMK 69

Query: 57  NHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEW 94
                      F   G + +     F+   D   GF +
Sbjct: 70  RAGFPIKRGGTF-RWGKEPEPWTFGFTRHPDDPYGFAY 106

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG---HAKTITIDG 46
           V V+G G +GLA+A   +++G  V+L ++    GG         IDG
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDG 177

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V V+G GI+GL +       G+ V  +E    +GG
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V V+G G SGL + + L + G  V + E    +GG
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 51.3 bits (123), Expect = 7e-09
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 28/121 (23%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKE----DSLGGHAKTITIDGVDLDLGFTLFN 57
            V VIG G +G  +A ++ K+G  V + EK+      +G                     
Sbjct: 7   DVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGES------------------- 47

Query: 58  HATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQ 117
               P  ME  D  G         F      G  F  G      + F+ + +    + WQ
Sbjct: 48  --LLPRCMEHLDEAGFLDAVKAQGFQQKF--GAKFVRGKEIADFN-FSDQFSNGWNWTWQ 102

Query: 118 M 118
           +
Sbjct: 103 V 103

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 51.4 bits (124), Expect = 8e-09
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
            VIG G++G+  AF++ +AG+ V+  E  + +GG
Sbjct: 12 AVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 51.3 bits (123), Expect = 8e-09
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
          VA+IGGG  GL  A +L + G+DV +YE+++  
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR 61

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 51.3 bits (123), Expect = 9e-09
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
          V V+GGG  GLA+A+ +A+ G  V++ E+  +     
Sbjct: 7  VVVVGGGPVGLATAWQVAERGHRVLVLER-HTFFNEN 42

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 51.2 bits (122), Expect = 9e-09
 Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 9/136 (6%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA---KTITIDGVDLDLGFTLFNHA 59
           + ++G G SG      LA+ G  V + ++ D +GG++   +    + +    G  +F H 
Sbjct: 6   ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIF-HT 64

Query: 60  TSPNTMEFFDSLGVDMKSSDMSFSVSLDKG-----QGFEWGTRNGFSSLFAQKKNLLNPY 114
            +     + +     M   +   +    +                 +    + + L+   
Sbjct: 65  DNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEK 124

Query: 115 FWQMLWEINKFKDDAL 130
               + +   F+++AL
Sbjct: 125 GDSTIADPQTFEEEAL 140

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
             VIG GI+G ++ + L+  G  VVL E+E   G H+
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVL-EREAQPGYHS 47

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 3  VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTIT-IDGVDLDLG 52
          V +IG GI+GL +A  L + G+ D ++ E  D +GG  +T+T   G   D+G
Sbjct: 11 VIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHA 39
            V+G G+ GLA+A+ L       V++ +   + G   
Sbjct: 26 YVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGD 63

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 18/75 (24%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEK--EDSLGGHAKTITIDGVDLDLGFTLFNHA 59
          QVA+IG G SGL    +L KAG+D V+ E+   D + G  +   ++              
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLE-------------- 49

Query: 60 TSPNTMEFFDSLGVD 74
               ++     GVD
Sbjct: 50 --QGMVDLLREAGVD 62

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 17/75 (22%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA 59
          + + + G GI GL+ A  L +AG+  V L E        +  I   GV +++        
Sbjct: 5  IDILIAGAGIGGLSCALALHQAGIGKVTLLES-------SSEIRPLGVGINI-------- 49

Query: 60 TSPNTMEFFDSLGVD 74
            P  +E    LG+ 
Sbjct: 50 -QPAAVEALAELGLG 63

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 3   VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGG 37
           +A++G G + ++ A  LA+ G  D+ ++EK++ +GG
Sbjct: 190 IALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V + G GI G   A++L + G  VV+ E+            +                 P
Sbjct: 9  VLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLL----------------KP 52

Query: 63 NTMEFFDSLGV 73
            +   ++ G+
Sbjct: 53 AGIRVVEAAGL 63

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEK 31
          + +IG G  G A+ +   +AG++V++ + 
Sbjct: 5  LIIIGSGSVGAAAGYYATRAGLNVLMTDA 33

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 3  VAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSLGG 37
          +A+IG G SGL +A  L        V L+E+  S GG
Sbjct: 9  IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEK 31
          M+V VIG G+ GL++A  + +    V+    
Sbjct: 1  MRVVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
          +V V+G G+ GL+SA +LA+ G  V +  ++
Sbjct: 8  RVVVLGSGVIGLSSALILARKGYSVHILARD 38

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 3   VAVIGGGISGLASAFVLAK-AGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT- 60
           V V+G G +GL++A+ ++K   V V + E+  S GG A           LG  LF+    
Sbjct: 42  VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW----------LGGQLFSAMIV 91

Query: 61  SPNTMEFFDSLGVDMKSSD 79
                 F D +GV     D
Sbjct: 92  RKPAHLFLDEIGVAYDEQD 110

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
          V +IGGG +G ++A+ L++ G+ ++L + +       K 
Sbjct: 9  VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKP 47

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 3   VAVIGGGISGLASAFVLAK--AGVDVVLYEKEDSLGGHA 39
           + ++G G  GL++A+VL+     + + + E   + GG A
Sbjct: 82  IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEK 31
          V V+G G  G+A+ + LAK GV  +L + 
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDA 34

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 11/76 (14%)

Query: 3   VAVIGGGISGLASAFVLAK--AGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           V ++G G SGL++A+V+AK    + V + E   + GG +            G        
Sbjct: 68  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG---------GQLFSAMVM 118

Query: 61  SPNTMEFFDSLGVDMK 76
                 F   L +  +
Sbjct: 119 RKPAHLFLQELEIPYE 134

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
           V +IG G +GLA+A     AG  V+L EKE   GG+
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 164

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
           V V+G G +G  ++    KAG +V+L +K    GG+
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 159

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
           V V+G G +G ++A     +G  V+L EKE  +GG+
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 164

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 46.3 bits (108), Expect = 4e-07
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 1  MQVAVIGGGISGLASAFVLAKAG---VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFN 57
           QV ++G G++G   A +L +     + + +++K D  GG   T               +
Sbjct: 2  AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSP----HNPQCTAD 57

Query: 58 HAT 60
             
Sbjct: 58 LGA 60

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 46.3 bits (109), Expect = 5e-07
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 1  MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL 35
          M++ VIG G +GL  A  L +A     + + EK D  
Sbjct: 1  MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 2  QVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHA 39
             ++GGG  GLA+A+ LAK     +V + EK   L G  
Sbjct: 23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEK-GWLAGGN 61

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V V G GI+G+A++   A+AG DV++ E+    GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 3  VAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGG 37
          +A++G G SG+A       A        ++V +EK+   GG
Sbjct: 5  IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG 45

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34
          ++ ++G G +GL     L +  VDV +Y     
Sbjct: 24 RIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKP 56

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 3  VAVIGGGISGLASAFVL-AKAGVDVVLYEKEDSLGG 37
            VIG G  G+ +   L  + G+  V ++K D  GG
Sbjct: 11 AVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH--AKTITIDGVD 48
           VA+IGGG +G+ +A  L +    V L E+   LGG    K I  +G +
Sbjct: 111 VAIIGGGPAGIGAALELQQYL-TVALIEERGWLGGDMWLKGIKQEGFN 157

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 3  VAVIGGGISGLASAFVLA-KAGVDVVLYEKEDSLGGHAKTITID--GVDLDLGFTLFNHA 59
          + V+G G  GL  A  +A +    V++ E+   +GG+A +      G+++        H 
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT 69

Query: 60 TSPNTMEFFDSL 71
          ++    ++    
Sbjct: 70 SNKRVWDYVRQF 81

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          +VA+IG G +G+  A  L   G+  V+  ++ ++G 
Sbjct: 6  KVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGH 41

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 43.3 bits (100), Expect = 6e-06
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 2   QVAVIGGGISGLASAFVLAKA--------GVDVVLYEKEDSLGGHAKT 41
           ++A++GGG  G+A+ + L +         G+DV +YE +     H + 
Sbjct: 58  RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRP 105

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT------ITIDGVD-LDLGFTL 55
            AVIG G +GL ++ VL +A   + L++       +  T      IT DG+   +     
Sbjct: 9   CAVIGAGPAGLNASLVLGRARKQIALFDNN--TNRNRVTQNSHGFITRDGIKPEEFKEIG 66

Query: 56  FNHATSPNTMEFFDSLGVDM-KSSDMSFSVSLDKGQGFE 93
            N      ++ +++   V + K S   F +       + 
Sbjct: 67  LNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYL 105

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYE-KEDSLGGHAKTITIDGVDLDLG 52
          V V+G   SG A+A +LAK G  V + + K       A+++  +G+ +  G
Sbjct: 12 VLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCG 62

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 21/75 (28%)

Query: 2  QVAVIGGGISGLASAFVLAK-AGVDVVLYEKED--SLGGHAKTITIDGVDLDLGFTLFNH 58
           V ++G G +GL  A  LA    +   + E+++     G A  I                
Sbjct: 34 DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGI---------------- 77

Query: 59 ATSPNTMEFFDSLGV 73
            +  TME F++   
Sbjct: 78 --ACRTMEMFEAFEF 90

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 31/73 (42%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V V+G GI+    + +L+  G  V+  +K+D  GG A ++T+  +         +     
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 73

Query: 63 NTMEFFDSLGVDM 75
          +         VD+
Sbjct: 74 SKFGKDRDWNVDL 86

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 1   MQ--VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI----TIDGVD-LDLGF 53
           M+  V +IGG  +GL++A  L +A  +++L +  +     A         DG    ++  
Sbjct: 1   MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIA 60

Query: 54  TLFNHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFE 93
                     T+ + +    D K S   F V +D G+   
Sbjct: 61  EARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRET 100

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 7/45 (15%), Positives = 22/45 (48%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGV 47
          V ++G G+     + +L+  G  +++ ++    GG   ++ +  +
Sbjct: 23 VIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNL 67

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHA 39
          + ++G G  G ++A  LA+ G  +V + +        +
Sbjct: 9  LLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAIS 46

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44
          V V+G G++    + +++  G  V+  ++    GG + +IT 
Sbjct: 9  VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITP 50

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 25/79 (31%)

Query: 2  QVAVIGGGISGLASAFVLA-----KAGVDVVLYEKED--SLGGHAKTITIDGVDLDLGFT 54
           V ++G G +GL +A VL+     K  + V + +K       G A  +            
Sbjct: 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGL------------ 57

Query: 55 LFNHATSPNTMEFFDSLGV 73
                   T+E   +LG+
Sbjct: 58 ------QCRTLESLKNLGL 70

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 35/99 (35%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG----FTLFNH 58
           V +IG G +G+  A    K G  V++ +   + G   + I I G     G    FT  N 
Sbjct: 30  VVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPG---EKIRISG-----GGRCNFT--NI 79

Query: 59  ATSPN---------------------TMEFFDSLGVDMK 76
             SP                       +   +  G+   
Sbjct: 80  HASPRNFLSGNPHFCKSALARYRPQDFVALVERHGIGWH 118

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 39.8 bits (94), Expect = 9e-05
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 35/100 (35%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG----FTLFN 57
          +  +IG G +GL  A  LAK G  V +++    +G   + I + G     G    FT  N
Sbjct: 6  ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG---RKILMSG-----GGFCNFT--N 55

Query: 58 HATSPN---------------------TMEFFDSLGVDMK 76
             +P                       +      G+   
Sbjct: 56 LEVTPAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYH 95

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 2  QVAVIGGGISGLASAFVLAKAGV-DVVLYEK 31
          ++ +IG GI G   A  L   G  ++ + ++
Sbjct: 6  RIVIIGAGIVGTNLADELVTRGWNNITVLDQ 36

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLY 29
           AV+G G  G A A  LA  G  V+ +
Sbjct: 7  YAVLGLGNGGHAFAAYLALKGQSVLAW 33

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
            +  V+G G  GL +A  LA  G  VVL EK      H
Sbjct: 93  TKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH 130

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* Length = 443

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 1  MQ-VAVIGGGISGLASAFVLAKAGVDVVLYE 30
          M+ V V+G G++G  +A+ L + GV V L+E
Sbjct: 1  MERVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 2  QVAVIGGGISGLASAFVLAK--AGVDVVLYEKEDSLGG 37
          Q+ V+G G +G  +A  L K  +   V +YEK+    G
Sbjct: 8  QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 45

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
          V VIGGG SGL +A   A+ G +V+L +K + LG
Sbjct: 29 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG 62

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 21/72 (29%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG---------------------HAK 40
           V VIG G +G   AF LAKA  +V++ + +  LGG                        
Sbjct: 6  DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLT 65

Query: 41 TITIDGVDLDLG 52
           I    + LD  
Sbjct: 66 NIANVKIPLDFS 77

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 3  VAVIGGGISGLASAFVLAKAG-----VDVVLYEKEDSLGGHAKTITIDGVDLDLGF 53
          +  +G G S +A A  L +       ++V+  +K+     H  T+ +   +L + F
Sbjct: 33 LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTL-VSQSELQISF 87

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 23/125 (18%), Positives = 35/125 (28%), Gaps = 5/125 (4%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEK---EDSLGGHAKTITIDGVDLDLGFTLFNHA 59
             VIG G  G  +A  L +AG+   + E     D+ G   K              L +  
Sbjct: 14  ALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKT 73

Query: 60  TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLF--AQKKNLLNPYFWQ 117
             P +      +   +             G     G   G  SL            YF +
Sbjct: 74  DQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEE 133

Query: 118 MLWEI 122
           +L  +
Sbjct: 134 ILPSV 138

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLY 29
          V +IG G++GL+        GV   + 
Sbjct: 8  VVIIGLGLTGLSCVDFFLARGVTPRVM 34

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          QVAVIG G + +A+A    + G  V L E+  ++GG
Sbjct: 6  QVAVIGSGGAAMAAALKAVEQGAQVTLIER-GTIGG 40

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 3  VAVIGGGISGLASAFVLAK--AGVDVVLYEKEDSLGGHAKTITIDGV 47
          + VIG G  G A AF L +   G  ++L E+         TI   GV
Sbjct: 39 IVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGV 85

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID-------GVDLDLGF 53
          M+  V+G G  G   A +L + G +V+L+ +          I +           + +  
Sbjct: 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKE---IVDLINVSHTSPYVEESKITVRA 71

Query: 54 T 54
          T
Sbjct: 72 T 72

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYE-KEDSLGGHAKTI 42
           VA+IGGG  G A A     AG++  L    E       + +
Sbjct: 56 SVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM 97

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
           V V+G G  G   A   A+ G+ VV  E
Sbjct: 39 SVGVLGLGTMGRGIAISFARVGISVVAVE 67

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLY 29
          M V+++G G  G A +  L   G +V ++
Sbjct: 1  MIVSILGAGAMGSALSVPLVDNGNEVRIW 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.7
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.7
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.68
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.67
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.66
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.64
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.64
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.63
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.63
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.63
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.62
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.61
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.61
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.6
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.6
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.58
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.57
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.55
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.55
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.49
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.49
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.49
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.48
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.48
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.47
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.46
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.46
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.44
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.43
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.42
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.42
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.39
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.37
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.36
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.34
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.29
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.28
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.25
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.24
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.24
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.23
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.23
3dme_A	369	Conserved exported protein; structural genomics, P	99.23
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.22
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.22
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.2
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.2
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.19
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.19
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.19
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.18
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.18
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.18
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.18
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.17
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.17
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.17
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.17
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.16
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.16
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.15
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.15
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.14
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.14
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.13
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.13
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.13
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.13
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.13
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.13
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.13
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.12
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.12
4dna_A	463	Probable glutathione reductase; structural genomic	99.11
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.11
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.11
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.11
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.11
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.11
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.11
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.1
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.1
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.1
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.1
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.1
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.09
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.09
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.09
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.08
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.08
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.08
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.08
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.08
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.08
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.08
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.07
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.07
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.07
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.07
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.06
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.06
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.06
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.05
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.05
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.05
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.05
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.04
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.04
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.04
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.04
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.04
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.03
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.03
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.03
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.02
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.02
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.02
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.02
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.01
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.01
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.01
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.01
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.01
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.01
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.01
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.0
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.99
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.99
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.99
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.99
3atr_A	453	Conserved archaeal protein; saturating double bond	98.99
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.99
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.99
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.98
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.98
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.98
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.98
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.98
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.97
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.97
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.97
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.97
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.96
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.96
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.96
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.94
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.93
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.93
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.93
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.92
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.92
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.92
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.91
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.9
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.9
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.89
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.89
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.88
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.88
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.88
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.88
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.87
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.87
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.87
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.87
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.86
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.85
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.84
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.83
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.82
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.81
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.8
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.79
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.78
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.77
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.75
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.75
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.74
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.73
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.73
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.71
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.7
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.7
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.69
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	98.69
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.69
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.69
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.68
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.68
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.67
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.66
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.65
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.64
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.64
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.62
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.61
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.6
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.58
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.58
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.55
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.53
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.51
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.48
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.46
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.45
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.44
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.4
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.4
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.37
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.36
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.32
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.88
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.87
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.87
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.8
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.8
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.7
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.67
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.66
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.66
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.63
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.63
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.62
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.61
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.6
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.58
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.56
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.55
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.54
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.52
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.51
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.5
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.45
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.45
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.43
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.4
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.38
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.37
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.36
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.35
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.34
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.34
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.33
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.32
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.32
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.3
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.28
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.28
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.26
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.26
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.25
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.24
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.24
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.24
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.24
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.23
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.23
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.22
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	97.22
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.22
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.21
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.21
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.17
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.17
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	97.17
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.16
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.16
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.16
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.15
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.15
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.14
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.13
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.13
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.12
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.12
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.11
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.11
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.11
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.1
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.09
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.09
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.07
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.07
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.06
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.06
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.06
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.05
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.05
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.05
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.04
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.03
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.02
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.01
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.99
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.99
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.99
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.98
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.98
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.98
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.98
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.98
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.97
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.97
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.96
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.96
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.95
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.95
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.94
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.94
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.94
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.93
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.93
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.93
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.91
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.91
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.9
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.9
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.9
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.89
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.89
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.89
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.88
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.88
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.87
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.86
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.86
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.86
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.86
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.86
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.86
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.85
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.85
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.85
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.85
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.85
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.84
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.81
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.8
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.79
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.79
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.79
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.79
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.78
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.75
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.75
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.73
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.73
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.72
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.72
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	96.7
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.7
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.7
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.69
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.69
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.69
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.68
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.68
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.68
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.67
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.67
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.67
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.67
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.66
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.66
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.66
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.65
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.65
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.64
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.64
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.64
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.63
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.63
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.63
4dna_A	463	Probable glutathione reductase; structural genomic	96.62
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.62
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.61
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.61
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.61
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.6
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.6
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.59
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.59
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.58
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.58
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.57
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.57
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.56
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.55
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.54
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.53
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.53
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.52
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.52
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.52
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.51
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.5
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.5
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.49
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.48
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.48
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.48
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.48
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.47
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.46
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.46
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.45
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.44
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.44
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.44
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.42
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.42
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.41
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.41
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.4
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.38
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.34
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.34
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.34
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.34
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.34
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.33
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.33
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.33
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.33
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.32
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.32
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.32
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.31
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.3
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.29
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.29
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.28
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.28
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.28
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.27
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.27
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.27
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.26
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.25
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.24
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.22
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.22
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.22
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.21
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.2
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.2
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	96.19
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.19
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.19
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.18
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.17
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.17
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.17
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.16
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.16
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.16
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	96.15
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.14
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.14
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.13
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.13
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.1
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.09
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.08
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.05
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.05
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.05
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.04
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.04
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.04
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.03
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.03
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.03
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.01
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.01
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	95.99
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.95
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	95.93
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.92
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.91
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.89
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.88
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	95.88
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	95.87
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	95.87
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.87
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	95.87
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.86
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.86
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.85
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.82
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	95.81
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.81
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	95.8

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.70  E-value=3.4e-17  Score=112.57  Aligned_cols=74  Identities=26%  Similarity=0.296  Sum_probs=63.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCeeee-cccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGHAKTI-TIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      +||+|||||++||+||+.|+++ |++|+|+|+++.+||+++|. ..+|+.++.|.+++.. ...++.+++++++...
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~-~~~~v~~l~~e~~~~~   86 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFS-HYKYFDDCLDEALPKE   86 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCC-CBHHHHHHHHHHSCSG
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecC-CCHHHHHHHHHhCCcc
Confidence            5899999999999999999985 99999999999999999885 5578999999988864 4677888888887543

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.70  E-value=1.1e-16  Score=109.90  Aligned_cols=72  Identities=35%  Similarity=0.511  Sum_probs=55.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVD   74 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~   74 (130)
                      ++|+|||||++||+||++|+++|++|+|+|+++.+||+++++..+|+.+|.|.+++..  .....++++.+|..
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~--~~~~~~l~~~~g~~   73 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD--PSAIEELFALAGKQ   73 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBSC--THHHHHHHHTTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecC--chhHHHHHHHhcch
Confidence            4899999999999999999999999999999999999999999999999999988753  23344566766643

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.68  E-value=3.8e-16  Score=105.31  Aligned_cols=81  Identities=25%  Similarity=0.443  Sum_probs=69.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSD   79 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~   79 (130)
                      +||+|||||++||+||+.|++.| .+|+|+|+++.+||++.+....|..++.|.+++.. .+..+.++++++|+......
T Consensus         7 ~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~-~~~~~~~l~~~~g~~~~~~~   85 (424)
T 2b9w_A            7 SRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-SYDTIQEIMDRTGDKVDGPK   85 (424)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT-TCHHHHHHHHHHCCCCCSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC-CcHHHHHHHHHhCCcccccc
Confidence            58999999999999999999999 89999999999999999999888899999987753 35677889999998765443


Q ss_pred             cee
Q 037740           80 MSF   82 (130)
Q Consensus        80 ~~~   82 (130)
                      ...
T Consensus        86 ~~~   88 (424)
T 2b9w_A           86 LRR   88 (424)
T ss_dssp             CCE
T ss_pred             ccc
Confidence            333

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.67  E-value=9e-17  Score=101.78  Aligned_cols=58  Identities=36%  Similarity=0.606  Sum_probs=52.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH   58 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~   58 (130)
                      +||+||||||+||+||+.|++.|++|+||||.+.+||++++....+..++.|...+..
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~   60 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTA   60 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCcccccc
Confidence            6999999999999999999999999999999999999999888888888888766653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.66  E-value=3.9e-16  Score=105.42  Aligned_cols=81  Identities=28%  Similarity=0.468  Sum_probs=69.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc---CcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID---GVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||||++|++||+.|++.|.+|+|+|+++.+||++.+.+.+   +..++.|+.++.........+.++++|++...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   81 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTAA   81 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeeee
Confidence            599999999999999999999999999999999999999988776   78889999887765466777888899987655


Q ss_pred             ccce
Q 037740           78 SDMS   81 (130)
Q Consensus        78 ~~~~   81 (130)
                      ....
T Consensus        82 ~~~~   85 (431)
T 3k7m_X           82 ASEF   85 (431)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            4433

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.64  E-value=5.8e-16  Score=105.79  Aligned_cols=74  Identities=39%  Similarity=0.555  Sum_probs=67.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      +||+|||+|++||++|+.|++.|++|+|+|+++.+||++++....+..++.|++++... ...+.++++++|+..
T Consensus        17 ~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~-~~~~~~~~~~~gl~~   90 (478)
T 2ivd_A           17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDR-EPATRALAAALNLEG   90 (478)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETT-CHHHHHHHHHTTCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhh-hHHHHHHHHHcCCcc
Confidence            58999999999999999999999999999999999999999999999999999888753 567889999999854

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.64  E-value=8.8e-16  Score=106.04  Aligned_cols=76  Identities=32%  Similarity=0.527  Sum_probs=67.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc-CcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID-GVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||||++||+||..|++.|++|+|+|+++.+||++.+.... +..++.|.+++... ...+.++++++|+....
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~   81 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK   81 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence            589999999999999999999999999999999999999999885 78899999888764 56778899999986543

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.63  E-value=9e-16  Score=105.35  Aligned_cols=73  Identities=29%  Similarity=0.449  Sum_probs=66.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVD   74 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~   74 (130)
                      +||+|||+|++||+||+.|++.|++|+|+|+++.+||++.+...++..++.|++++.. ...++.++++++|+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~-~~~~~~~~l~~lgl~  112 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW-HQSHVWREITRYKMH  112 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCT-TSHHHHHHHHHTTCT
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecC-ccHHHHHHHHHcCCc
Confidence            4799999999999999999999999999999999999999999989999999998875 356788899999984

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.63  E-value=8.2e-16  Score=103.61  Aligned_cols=77  Identities=27%  Similarity=0.414  Sum_probs=65.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccC-CCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH-ATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||||++||+||+.|+++|++|+|+|+++.+||+++++...|+.++.|...+.. .....+.++++++|+....
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~   78 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNI   78 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceE
Confidence            6999999999999999999999999999999999999999999889999998755432 2234567888999976553

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.63  E-value=1.4e-15  Score=102.58  Aligned_cols=76  Identities=24%  Similarity=0.472  Sum_probs=65.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccC-CCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH-ATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++||++|+.|++.|++|+|+|+++.+||++++....|+.++.|+..+.. .......++++++++..+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~   77 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVE   77 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcce
Confidence            5899999999999999999999999999999999999999999999999998755432 234567788899987644

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.62  E-value=5.7e-16  Score=105.38  Aligned_cols=76  Identities=30%  Similarity=0.520  Sum_probs=67.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC------CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG------VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVD   74 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g------~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~   74 (130)
                      +||+|||||++||+||+.|+++|      ++|+|+|+++.+||++++....+..++.|.+.+... ..+..++++++|+.
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~   84 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLER-KKSAPQLVKDLGLE   84 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETT-CTHHHHHHHHTTCC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhC-CHHHHHHHHHcCCc
Confidence            48999999999999999999999      999999999999999999988889999999777654 56788999999987


Q ss_pred             cee
Q 037740           75 MKS   77 (130)
Q Consensus        75 ~~~   77 (130)
                      ...
T Consensus        85 ~~~   87 (470)
T 3i6d_A           85 HLL   87 (470)
T ss_dssp             TTE
T ss_pred             cee
Confidence            544

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.61  E-value=1.4e-15  Score=103.92  Aligned_cols=77  Identities=35%  Similarity=0.569  Sum_probs=65.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCCCCCCeeeecc-cCcccccccccccCC--CChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHA--TSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~~~g~~~   75 (130)
                      +||+|||||++||++|++|+++|.  +|+|+|+++.+||++++... .|+.++.|.+.+...  ...++.++++++|+..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~   82 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDS   82 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGG
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcc
Confidence            589999999999999999999999  99999999999999999765 478889998877542  2455678999999875


Q ss_pred             ee
Q 037740           76 KS   77 (130)
Q Consensus        76 ~~   77 (130)
                      +.
T Consensus        83 ~~   84 (477)
T 3nks_A           83 EV   84 (477)
T ss_dssp             GE
T ss_pred             ee
Confidence            43

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.61  E-value=8.7e-16  Score=106.02  Aligned_cols=73  Identities=29%  Similarity=0.457  Sum_probs=62.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCChhHHHHHHHcCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATSPNTMEFFDSLGV   73 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~g~   73 (130)
                      +||+|||||++||+||+.|++.| ++|+|+|+++.+||++.+... .|..++.|++++...........+.++++
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~   83 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSL   83 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCC
Confidence            48999999999999999999999 999999999999999999886 78899999998876444445555666654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.60  E-value=2.9e-15  Score=101.74  Aligned_cols=75  Identities=37%  Similarity=0.556  Sum_probs=66.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||+|++||+||+.|++.|++|+|+|+++.+||++.+....+..++.|.+++... ...+.++++++|+...
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~   80 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD-QTALISLLDELGLKTF   80 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT-CHHHHHHHHHTTCCEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc-cHHHHHHHHHcCCccc
Confidence            48999999999999999999999999999999999999998888788889998887654 5677889999998654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.60  E-value=3.1e-15  Score=102.84  Aligned_cols=75  Identities=36%  Similarity=0.608  Sum_probs=67.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||+|++||++|+.|++.|++|+|+|+++.+||++.+....++.++.|.+++.. ....+.++++++|+...
T Consensus        14 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~-~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE-SEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC-CSHHHHHHHHHTTCGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCccccc-CcHHHHHHHHHcCCccc
Confidence            5899999999999999999999999999999999999999999888899999988764 35678899999998643

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.58  E-value=8e-15  Score=97.59  Aligned_cols=76  Identities=28%  Similarity=0.499  Sum_probs=64.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC-CCCCCCeeeecc----------cCcccccccccccCCCChhHHHHHH
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE-DSLGGHAKTITI----------DGVDLDLGFTLFNHATSPNTMEFFD   69 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~-~~~gg~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~   69 (130)
                      +||+|||+|++||++|+.|.+.|++|+|+|++ +.+||++.+...          .+..++.|.+++.. ....+.++++
T Consensus        45 ~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~-~~~~~~~~~~  123 (376)
T 2e1m_A           45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPS-FHPLTLALID  123 (376)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEET-TCHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecc-hHHHHHHHHH
Confidence            48999999999999999999999999999999 999999998873          35667788877654 3567788999


Q ss_pred             HcCCCcee
Q 037740           70 SLGVDMKS   77 (130)
Q Consensus        70 ~~g~~~~~   77 (130)
                      ++|+....
T Consensus       124 ~lGl~~~~  131 (376)
T 2e1m_A          124 KLGLKRRL  131 (376)
T ss_dssp             HTTCCEEE
T ss_pred             HcCCCcce
Confidence            99987654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.57  E-value=6.2e-15  Score=100.70  Aligned_cols=76  Identities=26%  Similarity=0.510  Sum_probs=67.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||+|++||++|+.|++.|  .+|+|+|+++.+||++++....++.++.|.+.+... ..++.++++++|+..+.
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-~~~~~~l~~~lg~~~~~   82 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVAR-KHILTDLIEAIGLGEKL   82 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETT-STHHHHHHHHTTCGGGE
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcc-cHHHHHHHHHcCCcceE
Confidence            58999999999999999999999  999999999999999999998888999998777643 56788999999987654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.55  E-value=1.7e-14  Score=98.89  Aligned_cols=75  Identities=35%  Similarity=0.538  Sum_probs=62.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-----------------cCcccccccccccCCCChh
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-----------------DGVDLDLGFTLFNHATSPN   63 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-----------------~~~~~~~g~~~~~~~~~~~   63 (130)
                      +||+|||+|++||+||+.|++.|++|+|+|+.+.+||++.+...                 .+..++.|...+... . .
T Consensus        12 ~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~-~   89 (489)
T 2jae_A           12 HSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQS-H-I   89 (489)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETT-S-T
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccH-H-H
Confidence            58999999999999999999999999999999999999877765                 344566676666543 3 7


Q ss_pred             HHHHHHHcCCCcee
Q 037740           64 TMEFFDSLGVDMKS   77 (130)
Q Consensus        64 ~~~~~~~~g~~~~~   77 (130)
                      +.++++++|+....
T Consensus        90 ~~~~~~~~g~~~~~  103 (489)
T 2jae_A           90 TLDYCRELGVEIQG  103 (489)
T ss_dssp             HHHHHHHHTCCEEE
T ss_pred             HHHHHHHcCCceEE
Confidence            88999999987653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.55  E-value=6.5e-15  Score=98.89  Aligned_cols=72  Identities=22%  Similarity=0.431  Sum_probs=63.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCeeeecc--cCccc-ccccccccCCCChhHHHHHHHcCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGHAKTITI--DGVDL-DLGFTLFNHATSPNTMEFFDSLGV   73 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg~~~~~~~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~   73 (130)
                      +||+|||+|++||++|+.|++. |.+|+|+|+++.+||++.+...  .|..+ +.|.+++.. ...++.++++++++
T Consensus         8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~-~~~~~~~~~~~~g~   83 (399)
T 1v0j_A            8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT-SNKRVWDYVRQFTD   83 (399)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE-SCHHHHHHHTTTCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC-CcHHHHHHHHHhhh
Confidence            5899999999999999999999 9999999999999999999887  56766 588887764 36778889998886

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.49  E-value=4.2e-14  Score=94.78  Aligned_cols=72  Identities=24%  Similarity=0.432  Sum_probs=62.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec-ccCccc-ccccccccCCCChhHHHHHHHcCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT-IDGVDL-DLGFTLFNHATSPNTMEFFDSLGV   73 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~   73 (130)
                      +||+|||||++|+++|+.|++.|.+|+|+|+++.+||++.+.. ..|..+ +.|.+.+.. ....+++++++++.
T Consensus        30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~-~~~~~~~~~~~~~~  103 (397)
T 3hdq_A           30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHT-NSKDVFEYLSRFTE  103 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEE-SCHHHHHHHHTSCC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCC-ChHHHHHHHHHhhh
Confidence            4899999999999999999999999999999999999998876 566654 888888763 36778899999885

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.49  E-value=6.2e-14  Score=93.76  Aligned_cols=72  Identities=19%  Similarity=0.368  Sum_probs=63.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc--cCccc-ccccccccCCCChhHHHHHHHcCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI--DGVDL-DLGFTLFNHATSPNTMEFFDSLGV   73 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~   73 (130)
                      +||+|||+|++|+++|..|++.|.+|+|+|+++.+||++.+...  .|..+ +.|.+++.. ...++.+++++++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~-~~~~~~~~~~~l~~   78 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT-DNETVWNYVNKHAE   78 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE-SCHHHHHHHHTTSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECC-CCHHHHHHHHHHhh
Confidence            58999999999999999999999999999999999999999887  56665 788888774 46778889998885

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.49  E-value=3.8e-14  Score=94.26  Aligned_cols=73  Identities=23%  Similarity=0.416  Sum_probs=62.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccc-cccccccCCCChhHHHHHHHcCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLD-LGFTLFNHATSPNTMEFFDSLGVD   74 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~   74 (130)
                      +||+|||+|++|+++|..|++.|.+|+|+|+++.+||++.+....+..++ .|.+++... ..+..+++++++..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~-~~~~~~~~~~l~~~   75 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTN-DKYIWDYVNDLVEF   75 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEES-CHHHHHHHHTTSCB
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecCC-CHHHHHHHHHhhhh
Confidence            58999999999999999999999999999999999999998887777774 888877653 46677888888753

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.48  E-value=5e-14  Score=95.99  Aligned_cols=46  Identities=30%  Similarity=0.492  Sum_probs=43.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDG   46 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~   46 (130)
                      +||+|||+|++||++|..|++.|++|+|+|+++.+||++++...++
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g   57 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQ   57 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccc
Confidence            6899999999999999999999999999999999999999977654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.48  E-value=1.2e-13  Score=94.38  Aligned_cols=76  Identities=26%  Similarity=0.498  Sum_probs=66.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCeeeecccCcccccccccccC---CCChhHHHHHHH-cCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH---ATSPNTMEFFDS-LGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~-~g~~~   75 (130)
                      +||+|||+|++|+++|..|++.|+ +|+|+|+.+.+||++.+....+..++.|++++..   .....+.+++++ +|+..
T Consensus         5 ~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl~~   84 (472)
T 1b37_A            5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRN   84 (472)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCCce
Confidence            589999999999999999999999 8999999999999999999888999999988763   223457788888 88865


Q ss_pred             e
Q 037740           76 K   76 (130)
Q Consensus        76 ~   76 (130)
                      .
T Consensus        85 ~   85 (472)
T 1b37_A           85 F   85 (472)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.47  E-value=3.1e-13  Score=92.82  Aligned_cols=71  Identities=27%  Similarity=0.395  Sum_probs=61.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCCCCeeee-cccCcccccccccccCCCChhHHHHHHHcC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLGGHAKTI-TIDGVDLDLGFTLFNHATSPNTMEFFDSLG   72 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~gg~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g   72 (130)
                      +||+|||+|++||++|+.|++.| .+|+|+|+++.+||++++. ..+|+.++.|...+.. ....+.++++++.
T Consensus        10 ~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~-~~~~~~~l~~~~~   82 (484)
T 4dsg_A           10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS-HYQYFDDVMDWAV   82 (484)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC-SBHHHHHHHHHHC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc-ChHHHHHHHHHHh
Confidence            58999999999999999999998 7999999999999999985 6778899999988764 4566778888764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.46  E-value=1.9e-13  Score=93.94  Aligned_cols=75  Identities=27%  Similarity=0.475  Sum_probs=63.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec--ccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT--IDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++||++|..|++.|.+|+|+|+++.+||++.+..  ..+..++.|.+++.. ....+.++++++|+...
T Consensus        34 ~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~g~~~~  110 (498)
T 2iid_A           34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE-KHRIVREYIRKFDLRLN  110 (498)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET-TCHHHHHHHHHTTCCEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccc-hHHHHHHHHHHhCCCce
Confidence            4899999999999999999999999999999999999988876  456778888877754 34566788999998643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.44  E-value=5.2e-13  Score=96.02  Aligned_cols=79  Identities=28%  Similarity=0.430  Sum_probs=67.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCChhHHHHHHHcCCCceecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSD   79 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~   79 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+.+.+||+..+... ++..++.|..++++........+.+++|+......
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~~~~  416 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFG  416 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCCEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCcccccc
Confidence            58999999999999999999999999999999999998888765 46788999988877666677788899998765443

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.4e-13  Score=88.97  Aligned_cols=39  Identities=36%  Similarity=0.645  Sum_probs=35.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAK--AGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~--~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+||+||+||++|++  .|++|+|||+.+.+||..
T Consensus        66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~  106 (326)
T 3fpz_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceE
Confidence            599999999999999999985  499999999999999854

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.42  E-value=7.8e-13  Score=93.85  Aligned_cols=77  Identities=29%  Similarity=0.407  Sum_probs=64.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||+|++||++|..|++.|++|+|+|+.+.+||+..++...+...+.|+.++..........+.+++++....
T Consensus       108 ~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~~~~~~G~~~~~~~~~~~~~~l~~~l~~~~~~  184 (662)
T 2z3y_A          108 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAK  184 (662)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccCchhhcCcEEEeCCCCchHHHHHHHhCcchhc
Confidence            48999999999999999999999999999999999999998888778889998887654334455677888876543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.42  E-value=1.1e-12  Score=95.07  Aligned_cols=77  Identities=29%  Similarity=0.407  Sum_probs=64.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||+|++||++|+.|++.|++|+|||+.+.+||+..++...+...+.|+.++.......+..+.+++++....
T Consensus       279 ~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~G~~~~~~~~~~~~~~l~~~lg~~~~~  355 (852)
T 2xag_A          279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAK  355 (852)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHTTCCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeecccccchhcCceEecCCCCchHHHHHHHhCCchhh
Confidence            47999999999999999999999999999999999999988888778889999887654333455677888876543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.39  E-value=8.5e-13  Score=89.49  Aligned_cols=72  Identities=18%  Similarity=0.291  Sum_probs=57.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeec-c--------------------cCcccccccccccCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTIT-I--------------------DGVDLDLGFTLFNHA   59 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~-~--------------------~~~~~~~g~~~~~~~   59 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+++.+||++.+.. .                    .++.++.|..++.. 
T Consensus         7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~-   85 (433)
T 1d5t_A            7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMA-   85 (433)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEET-
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeec-
Confidence            6899999999999999999999999999999999999999887 2                    12334445444432 


Q ss_pred             CChhHHHHHHHcCCC
Q 037740           60 TSPNTMEFFDSLGVD   74 (130)
Q Consensus        60 ~~~~~~~~~~~~g~~   74 (130)
                       ...+.++++++|+.
T Consensus        86 -~~~l~~ll~~lgl~   99 (433)
T 1d5t_A           86 -NGQLVKMLLYTEVT   99 (433)
T ss_dssp             -TSHHHHHHHHHTGG
T ss_pred             -cchHHHHHHHcCCc
Confidence             34567888888864

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.37  E-value=5.1e-13  Score=88.86  Aligned_cols=36  Identities=36%  Similarity=0.578  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      |||+||||||+||++|+.|++.|++|+|+||.+.+|
T Consensus         5 yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~   40 (397)
T 3oz2_A            5 YDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIG   40 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            799999999999999999999999999999977654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.36  E-value=1.1e-11  Score=84.81  Aligned_cols=73  Identities=15%  Similarity=0.304  Sum_probs=57.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccC--------------------cccccccccccCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDG--------------------VDLDLGFTLFNHAT   60 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~--------------------~~~~~g~~~~~~~~   60 (130)
                      +||+|||+|++|+++|..|++.|.+|+|+|+++.+||.+++.+.+.                    +.++.+...+.  .
T Consensus        21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~--~   98 (475)
T 3p1w_A           21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFIL--V   98 (475)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEE--T
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEee--c
Confidence            5899999999999999999999999999999999999998887531                    23444444443  2


Q ss_pred             ChhHHHHHHHcCCCc
Q 037740           61 SPNTMEFFDSLGVDM   75 (130)
Q Consensus        61 ~~~~~~~~~~~g~~~   75 (130)
                      ..++.+++.+.++..
T Consensus        99 ~g~L~~lL~~~gv~~  113 (475)
T 3p1w_A           99 GGNLVKILKKTRVTN  113 (475)
T ss_dssp             TSHHHHHHHHTTCGG
T ss_pred             CcHHHHHHHHCCchh
Confidence            456778888887643

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.34  E-value=1.4e-12  Score=84.71  Aligned_cols=38  Identities=29%  Similarity=0.606  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|++||..|++.|++|+|+|+ ..+||.+
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~   44 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQM   44 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCee
Confidence            7999999999999999999999999999999 4577743

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.29  E-value=3.7e-12  Score=83.74  Aligned_cols=56  Identities=27%  Similarity=0.465  Sum_probs=46.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHH---CCCcEEEEecCCCCCCCeeeeccc---Ccccccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAK---AGVDVVLYEKEDSLGGHAKTITID---GVDLDLGFTLF   56 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~---~g~~v~v~E~~~~~gg~~~~~~~~---~~~~~~g~~~~   56 (130)
                      +||+|||||++|+++|+.|++   .|++|+|||+++.+||++.+....   +..++.|...+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~   63 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYI   63 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCE
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceE
Confidence            489999999999999999999   899999999999999988776642   23456666554

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.28  E-value=1.3e-11  Score=82.90  Aligned_cols=36  Identities=39%  Similarity=0.713  Sum_probs=32.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||||++||++|+.|++.|++|+|+|+.+...
T Consensus        24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~   59 (407)
T 3rp8_A           24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK   59 (407)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            689999999999999999999999999999976543

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.25  E-value=4.6e-12  Score=82.09  Aligned_cols=36  Identities=31%  Similarity=0.595  Sum_probs=33.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||+|++|++||++|++.|++|+|||++. .||
T Consensus         7 yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg   42 (304)
T 4fk1_A            7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRN   42 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGG
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCC
Confidence            799999999999999999999999999999964 455

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.24  E-value=9.9e-12  Score=88.46  Aligned_cols=72  Identities=24%  Similarity=0.493  Sum_probs=62.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC--------CcEEEEecCC-CC----------------CCCeeeecc-------cCccc
Q 037740            2 QVAVIGGGISGLASAFVLAKAG--------VDVVLYEKED-SL----------------GGHAKTITI-------DGVDL   49 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g--------~~v~v~E~~~-~~----------------gg~~~~~~~-------~~~~~   49 (130)
                      +|+|||+|++||++|+.|.+.|        ++|+|+|+++ .+                ||+..+...       ++..+
T Consensus        58 ~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~~~  137 (721)
T 3ayj_A           58 RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDTIY  137 (721)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCcEE
Confidence            6999999999999999999998        9999999998 89                999988876       34678


Q ss_pred             ccccccccCCCChhHHHHHHHc-CCC
Q 037740           50 DLGFTLFNHATSPNTMEFFDSL-GVD   74 (130)
Q Consensus        50 ~~g~~~~~~~~~~~~~~~~~~~-g~~   74 (130)
                      +.|.+.+... ...+.++++++ |+.
T Consensus       138 e~G~~~~~~~-~~~~~~~~~~l~gl~  162 (721)
T 3ayj_A          138 EVGAMRFPEI-AGLTWHYASAAFGDA  162 (721)
T ss_dssp             ECSCCCEETT-CHHHHHHHHHHHCTT
T ss_pred             ecCCEEecCc-cHHHHHHHHHhcCCc
Confidence            8999887653 45678899999 985

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.24  E-value=3.4e-11  Score=80.99  Aligned_cols=37  Identities=32%  Similarity=0.641  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCc-EEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~~gg   37 (130)
                      +||+|||||++||++|..|++.|.+ |+|+|+.+.++.
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~   42 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   42 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccc
Confidence            5899999999999999999999999 999999776543

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.23  E-value=1.5e-11  Score=80.85  Aligned_cols=38  Identities=26%  Similarity=0.579  Sum_probs=35.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++|+++|+.|++.  |++|+|+|+.+.+||.
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg  119 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG  119 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc
Confidence            6999999999999999999997  9999999998877753

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.23  E-value=2.5e-11  Score=83.70  Aligned_cols=61  Identities=33%  Similarity=0.435  Sum_probs=45.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||+|++||++|+.|++.|.+|+|+|+.+.++...+...                .....+++++.+|+..+.
T Consensus        12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~----------------l~~~~~~~l~~lGl~~~~   72 (500)
T 2qa1_A           12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLG----------------FTARTMEVFDQRGILPRF   72 (500)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEE----------------ECHHHHHHHHTTTCGGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcce----------------ECHHHHHHHHHCCCHHHH
Confidence            6899999999999999999999999999999766543211111                135667788888875443

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.23  E-value=8.8e-12  Score=82.26  Aligned_cols=41  Identities=34%  Similarity=0.572  Sum_probs=35.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||+|++|+++|+.|+++|++|+|+|+.+.+|+.++.
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~s~   45 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSS   45 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSTTS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCccCc
Confidence            58999999999999999999999999999998666654443

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.22  E-value=2.9e-11  Score=83.33  Aligned_cols=61  Identities=33%  Similarity=0.405  Sum_probs=46.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||+|++||++|+.|++.|.+|+|||+.+..+...+..            .    .....+++++.+|+..+.
T Consensus        13 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~------------~----l~~~~~~~l~~lGl~~~~   73 (499)
T 2qa2_A           13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGL------------G----FTARTMEVFDQRGILPAF   73 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSE------------E----ECHHHHHHHHHTTCGGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcee------------E----ECHHHHHHHHHCCCHHHH
Confidence            589999999999999999999999999999976654311111            1    135677888888875543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.22  E-value=6.7e-12  Score=81.38  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=31.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |||+|||+|++|++||..|++.|++|+|+|+..
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            699999999999999999999999999999964

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.20  E-value=1.3e-11  Score=84.53  Aligned_cols=38  Identities=34%  Similarity=0.490  Sum_probs=34.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|+++..||.
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~   41 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK   41 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCC
Confidence            79999999999999999999999999999998755554

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.20  E-value=5.4e-11  Score=79.26  Aligned_cols=37  Identities=41%  Similarity=0.614  Sum_probs=33.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||||++|+++|+.|++.|.+|+|+|+.+.+++
T Consensus        12 ~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A           12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            5899999999999999999999999999999876654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.19  E-value=1.4e-11  Score=84.74  Aligned_cols=39  Identities=33%  Similarity=0.565  Sum_probs=36.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||||++|+++|..|++.|++|+|+|+.+.+||.+
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~   64 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTC   64 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            699999999999999999999999999999988899854

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.19  E-value=2.4e-11  Score=84.63  Aligned_cols=53  Identities=26%  Similarity=0.394  Sum_probs=45.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGF   53 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~   53 (130)
                      +||+|||||++|+++|..|.+.|++|+|||+++.+||.+....+.+..++...
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s   74 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVES   74 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCT
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCc
Confidence            48999999999999999999999999999999999998876666665554443

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.19  E-value=2.6e-11  Score=82.11  Aligned_cols=40  Identities=20%  Similarity=0.350  Sum_probs=36.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||||++|+++|+.|++.|+ +|+|+|+++..++...
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~~~   47 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISA   47 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcc
Confidence            589999999999999999999999 9999999887766543

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.18  E-value=4.6e-11  Score=82.88  Aligned_cols=60  Identities=33%  Similarity=0.583  Sum_probs=45.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++||++|+.|++.|.+|+|||+++..+...+..                ......+++++.+|+..+
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~----------------~l~~~~~~~l~~lGl~~~   65 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAA----------------GQNPRTMELLRIGGVADE   65 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSC----------------CBCHHHHHHHHHTTCHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccc----------------eECHHHHHHHHHcCCHHH
Confidence            489999999999999999999999999999987654321111                123566777777776443

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.18  E-value=5.3e-11  Score=82.94  Aligned_cols=37  Identities=32%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++||++|+.|++.|.+|+|+|+.+..+.
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~   63 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTIT   63 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            4899999999999999999999999999999876543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.18  E-value=1e-10  Score=78.37  Aligned_cols=59  Identities=37%  Similarity=0.691  Sum_probs=44.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC-CCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL-GGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~-gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+.. .+.....            .    ...+..++++.+|+..
T Consensus         6 ~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~------------~----l~~~~~~~l~~~g~~~   65 (397)
T 2vou_A            6 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGI------------V----VQPELVHYLLEQGVEL   65 (397)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEE------------E----CCHHHHHHHHHTTCCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccc------------c----cChhHHHHHHHcCCcc
Confidence            58999999999999999999999999999997653 1111110            0    1356777888888754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.18  E-value=6.5e-11  Score=82.81  Aligned_cols=60  Identities=33%  Similarity=0.359  Sum_probs=44.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||+|++||++|+.|++.|++|+|||+.+.........                ......+++++.+|+...
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~----------------~l~~~s~~~l~~lGl~~~  109 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAG----------------ALHIRTVETLDLRGLLDR  109 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCC----------------CBCHHHHHHHHTTTCHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEE----------------EECHHHHHHHHHcCChHH
Confidence            589999999999999999999999999999976543211110                123556777777776443

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.17  E-value=3.3e-11  Score=83.82  Aligned_cols=52  Identities=27%  Similarity=0.378  Sum_probs=44.5

Q ss_pred             CcEEEEccCHHHHHHHHHHH-HCCCcEEEEecCCCCCCCeeeecccCcccccc
Q 037740            1 MQVAVIGGGISGLASAFVLA-KAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG   52 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~-~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g   52 (130)
                      +||+|||||++|+++|..|+ +.|.+|+|+|+++.+||.+....+.+..++..
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~   61 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTE   61 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCC
Confidence            48999999999999999999 88999999999999999887666666544443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.17  E-value=5.8e-11  Score=79.40  Aligned_cols=35  Identities=40%  Similarity=0.713  Sum_probs=32.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .+|+|||||++||++|..|++.|++|+||||++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999997654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.17  E-value=1.3e-11  Score=85.85  Aligned_cols=53  Identities=30%  Similarity=0.473  Sum_probs=39.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT   54 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~   54 (130)
                      ||++|||+|++|+++|..+++.|.+|+|+|++.. .........+|.|++.||.
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~-~~~~~k~~lGGtCln~GCI   95 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP-SSQGTKWGIGGTCVNVGCV   95 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC-CTTCCCCCSSHHHHHHSHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc-ccccccCCCCCcccccchH
Confidence            7999999999999999999999999999997432 1111111123378888773

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.17  E-value=3.9e-11  Score=83.43  Aligned_cols=47  Identities=30%  Similarity=0.433  Sum_probs=41.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGV   47 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~   47 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+.+.+||.+....+++.
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~   63 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGA   63 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTC
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCce
Confidence            58999999999999999999999999999999999998765555443

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.16  E-value=1.9e-11  Score=85.13  Aligned_cols=51  Identities=31%  Similarity=0.548  Sum_probs=44.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDL   51 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~   51 (130)
                      +||+|||||++|+++|..|.+.|++|+|||+++.+||.+....+++..++.
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~   60 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDT   60 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecC
Confidence            489999999999999999999999999999999999988766666544443

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.15  E-value=3.3e-11  Score=79.95  Aligned_cols=40  Identities=35%  Similarity=0.521  Sum_probs=35.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||+|++|+++|+.|+ +|++|+|+|+++.+|+.++.
T Consensus        10 ~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g~~as~   49 (381)
T 3nyc_A           10 ADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPGYHSTG   49 (381)
T ss_dssp             CSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTTSSGGG
T ss_pred             CCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCccccccc
Confidence            58999999999999999999 69999999998777754443

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.15  E-value=3.8e-11  Score=82.97  Aligned_cols=39  Identities=38%  Similarity=0.657  Sum_probs=36.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++||++|+.|++.|.+|+|+||.+..||..
T Consensus        42 ~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s   80 (510)
T 4at0_A           42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGAT   80 (510)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            589999999999999999999999999999998888754

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.14  E-value=2.4e-11  Score=83.38  Aligned_cols=39  Identities=28%  Similarity=0.464  Sum_probs=35.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||||++|+++|..|++.|++|+|+|+ ..+||.+.
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   65 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCV   65 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCcee
Confidence            5899999999999999999999999999999 67888543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.14  E-value=3e-11  Score=83.17  Aligned_cols=38  Identities=32%  Similarity=0.436  Sum_probs=34.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|++ .+||.+
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc   46 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTC   46 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcc
Confidence            69999999999999999999999999999995 588854

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.13  E-value=5.3e-11  Score=84.88  Aligned_cols=41  Identities=32%  Similarity=0.477  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||||++|+++|+.|+++|++|+|+|+++.+|+.++.
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~  305 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQGASG  305 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTTCSGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcccccccc
Confidence            58999999999999999999999999999998777754433

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.13  E-value=2.7e-11  Score=82.81  Aligned_cols=40  Identities=40%  Similarity=0.615  Sum_probs=36.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~   44 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL   44 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence            6999999999999999999999999999998888998543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.13  E-value=5.2e-11  Score=80.44  Aligned_cols=37  Identities=27%  Similarity=0.495  Sum_probs=34.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||||++|+++|+.|++.|.+|+|+|+.+.+|+
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~   64 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGE   64 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence            5999999999999999999999999999999887764

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.13  E-value=6.4e-11  Score=79.23  Aligned_cols=36  Identities=36%  Similarity=0.633  Sum_probs=33.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|+.|+++|.+|+|+|+.+..+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            589999999999999999999999999999976544

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.13  E-value=7.8e-11  Score=77.03  Aligned_cols=38  Identities=37%  Similarity=0.647  Sum_probs=35.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++|+++|+.|++.  |.+|+|+|+++.+||.
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg  105 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc
Confidence            4899999999999999999998  9999999998888764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.13  E-value=4e-11  Score=82.38  Aligned_cols=31  Identities=39%  Similarity=0.536  Sum_probs=30.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      |||+|||+|++|+++|..|++.|.+|+|+|+
T Consensus         7 ~DvvVIG~G~aGl~aA~~la~~G~~V~liEk   37 (488)
T 3dgz_A            7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADY   37 (488)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEEe
Confidence            6999999999999999999999999999997

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.13  E-value=5.5e-11  Score=84.61  Aligned_cols=39  Identities=31%  Similarity=0.484  Sum_probs=35.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||||++|+++|+.|+++|.+|+|+|+++.+|+.+
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~ga  311 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGA  311 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccC
Confidence            589999999999999999999999999999977776533

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.12  E-value=4.9e-11  Score=78.32  Aligned_cols=40  Identities=40%  Similarity=0.742  Sum_probs=37.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~   43 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ   43 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            5899999999999999999999999999999988888654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.12  E-value=1.1e-10  Score=78.56  Aligned_cols=34  Identities=35%  Similarity=0.538  Sum_probs=31.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~   39 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF   39 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            5899999999999999999999999999999754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.11  E-value=3.2e-11  Score=82.35  Aligned_cols=38  Identities=34%  Similarity=0.507  Sum_probs=35.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|+ ..+||.+
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~   43 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTC   43 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcc
Confidence            5899999999999999999999999999999 6788854

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.11  E-value=1.5e-10  Score=77.51  Aligned_cols=35  Identities=31%  Similarity=0.515  Sum_probs=32.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|+.|++.|.+|+|+|+.+..
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            48999999999999999999999999999997543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.11  E-value=5.7e-11  Score=81.53  Aligned_cols=31  Identities=35%  Similarity=0.461  Sum_probs=29.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|+
T Consensus        10 ~DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A           10 YDLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            6999999999999999999999999999995

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.11  E-value=5.2e-11  Score=78.91  Aligned_cols=37  Identities=22%  Similarity=0.448  Sum_probs=33.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++|+++|+.|+++|.+|+|+|+....++
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~   39 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQ   39 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            5899999999999999999999999999999766543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.11  E-value=8.2e-11  Score=75.71  Aligned_cols=38  Identities=37%  Similarity=0.640  Sum_probs=34.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++|+++|+.|++. |.+|+|+|+.+.+||.
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~   78 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG   78 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc
Confidence            4899999999999999999997 9999999998887763

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.11  E-value=5.6e-11  Score=82.28  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=31.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |||+|||+|++|+++|..|++.|.+|+|+|+++
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            599999999999999999999999999999854

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.11  E-value=9e-11  Score=79.82  Aligned_cols=42  Identities=36%  Similarity=0.513  Sum_probs=38.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCCCCCCeeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSLGGHAKTI   42 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~~gg~~~~~   42 (130)
                      +||+|||||++|+++|..|++.|.  +|+|||+.+.+||.+...
T Consensus         7 ~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~   50 (447)
T 2gv8_A            7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYT   50 (447)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCC
T ss_pred             CEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCC
Confidence            589999999999999999999999  999999988888876543

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.10  E-value=8.4e-11  Score=78.17  Aligned_cols=36  Identities=42%  Similarity=0.612  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||||++|+++|+.|++.|.+|+|+|+....+
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~   53 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGG   53 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCc
Confidence            589999999999999999999999999999975443

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.10  E-value=4.6e-11  Score=77.86  Aligned_cols=39  Identities=33%  Similarity=0.521  Sum_probs=36.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+.+.+||.+
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~   46 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL   46 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            489999999999999999999999999999999888866

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.10  E-value=1.1e-10  Score=81.60  Aligned_cols=38  Identities=37%  Similarity=0.700  Sum_probs=35.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++||++|+.|++.|.+|+|+|+.+..||.
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~  164 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN  164 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            59999999999999999999999999999999888764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.10  E-value=9e-11  Score=78.93  Aligned_cols=37  Identities=32%  Similarity=0.552  Sum_probs=34.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++|+++|+.|++.|.+|+|+|+++.+|+
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~   41 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGR   41 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCch
Confidence            6999999999999999999999999999999887753

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.10  E-value=1.3e-10  Score=82.22  Aligned_cols=59  Identities=22%  Similarity=0.320  Sum_probs=43.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      +||+|||||++||++|+.|++ .|.+|+|+|+.+..+...+...                .....+++++.+|+..
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~----------------l~~~t~e~l~~lGl~~   92 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADG----------------IACRTMEMFEAFEFAD   92 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCE----------------ECHHHHHHHHHTTCHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceee----------------eCHHHHHHHHHcCcHH
Confidence            489999999999999999999 9999999999765432111110                1345677778777643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.09  E-value=5.6e-11  Score=80.99  Aligned_cols=39  Identities=38%  Similarity=0.597  Sum_probs=36.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|+++.+||.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~   40 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTC   40 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence            699999999999999999999999999999987888854

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.09  E-value=5.7e-11  Score=81.21  Aligned_cols=40  Identities=35%  Similarity=0.574  Sum_probs=36.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            5899999999999999999999999999999878888543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.09  E-value=1.2e-10  Score=77.51  Aligned_cols=36  Identities=36%  Similarity=0.589  Sum_probs=33.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|+.|+++|.+|+|+|+....+
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            589999999999999999999999999999976544

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.08  E-value=2.2e-10  Score=81.51  Aligned_cols=59  Identities=24%  Similarity=0.339  Sum_probs=43.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLAK-----AGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-----~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      +||+|||||++||++|..|++     .|.+|+|||+.+......+.            ..    .....+++++.+|+..
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra------------~~----l~~~tle~l~~lGl~~   72 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQA------------DG----LQCRTLESLKNLGLAD   72 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSC------------CE----ECHHHHHHHHTTTCHH
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCce------------eE----EChHHHHHHHHCCCHH
Confidence            489999999999999999999     99999999997543211111            01    1355677788887643

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.08  E-value=1.2e-10  Score=79.30  Aligned_cols=37  Identities=46%  Similarity=0.709  Sum_probs=34.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||||++|+++|+.|++.|.+|+|+|+.+.+|+
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~   63 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGR   63 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCc
Confidence            6999999999999999999999999999999877664

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.08  E-value=6.8e-11  Score=78.14  Aligned_cols=40  Identities=28%  Similarity=0.525  Sum_probs=36.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|||+.+.+||.+.
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            4899999999999999999999999999999888887553

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.08  E-value=1.5e-10  Score=79.19  Aligned_cols=40  Identities=35%  Similarity=0.556  Sum_probs=37.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus         7 ~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A            7 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            6999999999999999999999999999999888898653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.08  E-value=7.7e-11  Score=77.06  Aligned_cols=39  Identities=23%  Similarity=0.471  Sum_probs=36.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+++..||.+
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~   44 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL   44 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCee
Confidence            589999999999999999999999999999988888755

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.08  E-value=7.5e-11  Score=80.82  Aligned_cols=39  Identities=36%  Similarity=0.605  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+.+.+||.+
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~   44 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTC   44 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcc
Confidence            589999999999999999999999999999988888754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.08  E-value=1.9e-10  Score=76.18  Aligned_cols=35  Identities=34%  Similarity=0.610  Sum_probs=32.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||+|++|+++|+.|++.|.+|+|+|+....
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~   41 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCC
Confidence            58999999999999999999999999999997643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.07  E-value=9.8e-11  Score=80.26  Aligned_cols=38  Identities=42%  Similarity=0.586  Sum_probs=34.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|++ ..||.+
T Consensus        21 ~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~   58 (478)
T 3dk9_A           21 YDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTC   58 (478)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcc
Confidence            69999999999999999999999999999985 678754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.07  E-value=9.8e-11  Score=76.48  Aligned_cols=40  Identities=33%  Similarity=0.521  Sum_probs=35.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC----CCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE----DSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~----~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+.    ..+||.+.
T Consensus        23 ~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~   66 (338)
T 3itj_A           23 NKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLT   66 (338)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccc
Confidence            58999999999999999999999999999994    46777554

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.07  E-value=1.1e-10  Score=75.77  Aligned_cols=38  Identities=18%  Similarity=0.333  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|++  +||.+.
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~   53 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLT   53 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGG
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeec
Confidence            48999999999999999999999999999997  777554

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.07  E-value=1.1e-10  Score=81.46  Aligned_cols=38  Identities=34%  Similarity=0.524  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      |||+|||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus        19 ~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~Gt   56 (561)
T 3da1_A           19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGT   56 (561)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCc
Confidence            69999999999999999999999999999998655553

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.06  E-value=9.3e-11  Score=80.30  Aligned_cols=39  Identities=38%  Similarity=0.613  Sum_probs=36.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+++.+||.+
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~   45 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTC   45 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcc
Confidence            589999999999999999999999999999988888854

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.06  E-value=2.3e-10  Score=76.13  Aligned_cols=37  Identities=43%  Similarity=0.676  Sum_probs=33.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++|+++|+.|+++|++|+|+|+. .+++.
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~-~~~~g   42 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR-FIGSG   42 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSS-STTCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCCCC
Confidence            59999999999999999999999999999997 45543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.06  E-value=1.6e-10  Score=80.06  Aligned_cols=40  Identities=25%  Similarity=0.386  Sum_probs=36.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            5899999999999999999999999999999876888543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.06  E-value=1.4e-10  Score=81.04  Aligned_cols=38  Identities=37%  Similarity=0.644  Sum_probs=35.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++||++|+.|++.|.+|+|||+.+..||.
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~  159 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN  159 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            58999999999999999999999999999998887764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.05  E-value=5.6e-10  Score=78.42  Aligned_cols=35  Identities=40%  Similarity=0.658  Sum_probs=32.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus        24 ~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~   58 (591)
T 3i3l_A           24 SKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFP   58 (591)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCC
Confidence            58999999999999999999999999999997544

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.05  E-value=2.5e-10  Score=76.53  Aligned_cols=36  Identities=42%  Similarity=0.733  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.++
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   62 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDRE   62 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence            589999999999999999999999999999976543

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.05  E-value=2e-10  Score=80.54  Aligned_cols=38  Identities=34%  Similarity=0.589  Sum_probs=34.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC------CCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~------g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||||++||++|+.|++.      |.+|+|+||.+.+|+.
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            6999999999999999999999      9999999998777653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.05  E-value=1.2e-10  Score=79.94  Aligned_cols=39  Identities=38%  Similarity=0.713  Sum_probs=36.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+++.+||.+
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~   45 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVC   45 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCce
Confidence            589999999999999999999999999999988888744

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.04  E-value=1.5e-10  Score=77.48  Aligned_cols=36  Identities=44%  Similarity=0.724  Sum_probs=32.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CC-CcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AG-VDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g-~~v~v~E~~~~~gg   37 (130)
                      +||+|||||++|+++|+.|++ .| .+|+|+|+++ +++
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~-~~~   59 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW-LAG   59 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS-TTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC-CCC
Confidence            489999999999999999999 99 9999999977 554

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.04  E-value=2.5e-10  Score=77.93  Aligned_cols=39  Identities=41%  Similarity=0.676  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|||+.+.+||..
T Consensus       123 ~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l  161 (456)
T 2vdc_G          123 LSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLL  161 (456)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            589999999999999999999999999999988888853

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.04  E-value=2.5e-10  Score=78.10  Aligned_cols=41  Identities=29%  Similarity=0.575  Sum_probs=37.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHH---CCCc---EEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAK---AGVD---VVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~---~g~~---v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||||++|+++|..|++   .|.+   |+|||+.+.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            589999999999999999999   9999   9999999889987654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.04  E-value=2.1e-10  Score=74.80  Aligned_cols=39  Identities=33%  Similarity=0.598  Sum_probs=35.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+. .+||.+.
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   47 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIA   47 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccc
Confidence            48999999999999999999999999999997 6777554

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.04  E-value=2.2e-10  Score=74.55  Aligned_cols=39  Identities=28%  Similarity=0.614  Sum_probs=34.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+ ..+||.+.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~   55 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTA   55 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence            4899999999999999999999999999999 56677543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.03  E-value=2.7e-10  Score=78.60  Aligned_cols=36  Identities=36%  Similarity=0.506  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||||++|+++|+.|+++|++|+|+|+++..+
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~   39 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLAC   39 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCC
Confidence            599999999999999999999999999999975433

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.03  E-value=1.4e-10  Score=79.53  Aligned_cols=38  Identities=42%  Similarity=0.600  Sum_probs=34.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||||++|+++|..|++.|.+|+|+|++ ..||.+
T Consensus        12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~   49 (479)
T 2hqm_A           12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTC   49 (479)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHH
T ss_pred             CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcC
Confidence            58999999999999999999999999999996 678754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.03  E-value=1.9e-10  Score=78.64  Aligned_cols=39  Identities=38%  Similarity=0.624  Sum_probs=35.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|++ .+||.+.
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            5 VQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            68999999999999999999999999999996 6788543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.02  E-value=1.6e-10  Score=79.03  Aligned_cols=38  Identities=42%  Similarity=0.598  Sum_probs=34.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|++ .+||.+
T Consensus         5 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~   42 (463)
T 2r9z_A            5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTC   42 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcC
Confidence            58999999999999999999999999999996 678754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.02  E-value=1.4e-10  Score=79.04  Aligned_cols=38  Identities=37%  Similarity=0.510  Sum_probs=34.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||||++|+++|..|++.|++|+|+|++ ..||.+
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~   42 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTC   42 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcc
Confidence            58999999999999999999999999999996 678754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.02  E-value=2.7e-10  Score=76.13  Aligned_cols=34  Identities=47%  Similarity=0.695  Sum_probs=32.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            6999999999999999999999999999999764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.02  E-value=2e-10  Score=79.00  Aligned_cols=39  Identities=28%  Similarity=0.486  Sum_probs=34.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CCCcEEEEe--------cCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYE--------KEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E--------~~~~~gg~~   39 (130)
                      |||+|||||++|+++|..|++ .|++|+|+|        +...+||.+
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c   51 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTC   51 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHH
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccc
Confidence            689999999999999999999 999999999        246677743

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.01  E-value=1.8e-10  Score=74.57  Aligned_cols=39  Identities=36%  Similarity=0.732  Sum_probs=35.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEE-EecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVL-YEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v-~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+| +|+ +.+||.+.
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~   44 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQIT   44 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGG
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceee
Confidence            5899999999999999999999999999 999 66787543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.01  E-value=1.9e-10  Score=78.12  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=32.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++|+++|+.|++.| .+|+|+|++..++.
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~   61 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGS   61 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCC
Confidence            58999999999999999999999 99999999444443

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.01  E-value=2e-10  Score=75.67  Aligned_cols=35  Identities=31%  Similarity=0.581  Sum_probs=32.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC------CcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG------VDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g------~~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|+.|++.|      .+|+|+|+....
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~   41 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTP   41 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCC
Confidence            59999999999999999999998      899999997643

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.01  E-value=3.4e-10  Score=79.22  Aligned_cols=37  Identities=35%  Similarity=0.587  Sum_probs=33.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            5999999999999999999999999999999764444

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.01  E-value=2e-10  Score=78.44  Aligned_cols=39  Identities=33%  Similarity=0.587  Sum_probs=35.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|+ +..||.+.
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            6999999999999999999999999999999 67888553

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.01  E-value=3e-10  Score=77.42  Aligned_cols=38  Identities=34%  Similarity=0.544  Sum_probs=35.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|++ ..||.+
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~   41 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC   41 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcC
Confidence            69999999999999999999999999999997 677754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.01  E-value=2.6e-10  Score=78.60  Aligned_cols=38  Identities=42%  Similarity=0.635  Sum_probs=34.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||||++|+++|..|++.|.+|+|+|++ ..||.+
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c   40 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTC   40 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCccc
Confidence            69999999999999999999999999999996 577744

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.00  E-value=5.5e-10  Score=77.03  Aligned_cols=38  Identities=39%  Similarity=0.520  Sum_probs=35.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||||++|+++|..|++.|.+|+|+|+.+..|+.
T Consensus        93 ~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           93 TKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            58999999999999999999999999999998877654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.00  E-value=1.6e-10  Score=79.67  Aligned_cols=38  Identities=29%  Similarity=0.622  Sum_probs=35.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..|++.   |++|+|+|+++ +||.+
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~   43 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAA   43 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcc
Confidence            5899999999999999999999   99999999977 88854

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.99  E-value=3.6e-10  Score=75.98  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=32.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++|+++|+.|+++  |++|+|+|+....++
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~   75 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE   75 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCT
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            4899999999999999999999  999999999754433

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.99  E-value=4.4e-10  Score=72.78  Aligned_cols=39  Identities=38%  Similarity=0.759  Sum_probs=34.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|+++|..|++.|+ +|+|+|++ ..||.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~   41 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQIT   41 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccc
Confidence            589999999999999999999999 99999994 5677543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.99  E-value=3.3e-10  Score=79.54  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=33.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++||+||+.|++.|.+|+|+||.+..+|
T Consensus         8 ~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g   44 (588)
T 2wdq_A            8 FDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS   44 (588)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            5899999999999999999999999999999876544

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.99  E-value=6.4e-10  Score=69.55  Aligned_cols=37  Identities=38%  Similarity=0.478  Sum_probs=33.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++|+.+|..|++.|.+|+|+|+.....|
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G   40 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM   40 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC
Confidence            6999999999999999999999999999999743333

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.99  E-value=2.9e-10  Score=77.47  Aligned_cols=35  Identities=29%  Similarity=0.624  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            69999999999999999999999999999997653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.99  E-value=3.4e-10  Score=79.88  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++||+||+.|++.|.+|+|+||.+..++
T Consensus        19 ~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g   55 (621)
T 2h88_A           19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRS   55 (621)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            5899999999999999999999999999999765544

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.99  E-value=3.4e-10  Score=74.85  Aligned_cols=38  Identities=37%  Similarity=0.658  Sum_probs=34.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|+ +|+|||+++ +||.+
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~   43 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSF   43 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcc
Confidence            589999999999999999999999 999999977 77744

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.98  E-value=4e-10  Score=72.32  Aligned_cols=36  Identities=28%  Similarity=0.565  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+++..+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~   38 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRN   38 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccc
Confidence            589999999999999999999999999999965433

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.98  E-value=3.1e-10  Score=77.57  Aligned_cols=38  Identities=32%  Similarity=0.520  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+++ .||.+
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~   44 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVC   44 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCC
Confidence            589999999999999999999999999999966 77743

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.98  E-value=5.4e-10  Score=74.52  Aligned_cols=35  Identities=37%  Similarity=0.443  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~   35 (130)
                      .||+|||||++|+++|+.|++.  |.+|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            5899999999999999999999  9999999998765

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.98  E-value=4.1e-10  Score=79.96  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++||+||+.|++.|.+|+|+|+.+..+|
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g   42 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS   42 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGS
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            6999999999999999999999999999999776543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.98  E-value=1.4e-09  Score=75.42  Aligned_cols=33  Identities=30%  Similarity=0.596  Sum_probs=31.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHH------------CCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK------------AGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~------------~g~~v~v~E~~~   33 (130)
                      +||+|||||++|+++|..|++            .|.+|+|+|+.+
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            8 TEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            589999999999999999999            899999999864

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.97  E-value=1.6e-09  Score=75.34  Aligned_cols=33  Identities=24%  Similarity=0.521  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHH---CCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK---AGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~---~g~~v~v~E~~~   33 (130)
                      +||+|||||++|+++|+.|++   .|.+|+|+|+..
T Consensus         6 ~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            589999999999999999999   999999999954

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.97  E-value=4.8e-10  Score=77.51  Aligned_cols=34  Identities=38%  Similarity=0.527  Sum_probs=31.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~   41 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF   41 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCC
Confidence            5899999999999999999999999999999763

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.97  E-value=4.8e-10  Score=78.01  Aligned_cols=37  Identities=32%  Similarity=0.483  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++||++|+.|++ |.+|+|+||.+..+|.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence            599999999999999999999 9999999998766553

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.97  E-value=6.3e-10  Score=79.43  Aligned_cols=40  Identities=45%  Similarity=0.629  Sum_probs=37.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+++..||.+.
T Consensus       392 ~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~  431 (690)
T 3k30_A          392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVT  431 (690)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEee
Confidence            5899999999999999999999999999999988998654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.96  E-value=3.4e-10  Score=77.32  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|++ ..||.+
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~   41 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVC   41 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcc
Confidence            58999999999999999999999999999996 677643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.96  E-value=3e-10  Score=78.28  Aligned_cols=39  Identities=31%  Similarity=0.518  Sum_probs=34.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CCCcEEEEe--------cCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYE--------KEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E--------~~~~~gg~~   39 (130)
                      |||+|||||++|+++|..|++ .|++|+|+|        +...+||.+
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~   55 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTC   55 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHH
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCee
Confidence            589999999999999999999 999999999        235677743

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.96  E-value=5.8e-10  Score=75.59  Aligned_cols=33  Identities=27%  Similarity=0.617  Sum_probs=31.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            489999999999999999999999999999865

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.94  E-value=8.3e-10  Score=72.13  Aligned_cols=39  Identities=23%  Similarity=0.466  Sum_probs=34.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec----CCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK----EDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~----~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+    ....||.+
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~   51 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQL   51 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCcee
Confidence            4899999999999999999999999999998    45566643

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.93  E-value=1.3e-09  Score=75.20  Aligned_cols=33  Identities=33%  Similarity=0.554  Sum_probs=30.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHH---CCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK---AGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~---~g~~v~v~E~~~   33 (130)
                      +||+|||||++|+++|+.|++   .|.+|+|+|+.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            589999999999999999999   999999999964

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.93  E-value=1.4e-09  Score=74.62  Aligned_cols=36  Identities=39%  Similarity=0.656  Sum_probs=32.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      ||+|||+|++|+++|+.|++.|.+|+|+||. ..+|.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            8999999999999999999999999999997 55553

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.93  E-value=6.6e-10  Score=72.17  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=33.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+. .+||.+
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~   43 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQL   43 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceE
Confidence            58999999999999999999999999999984 567744

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.92  E-value=1.3e-09  Score=78.33  Aligned_cols=41  Identities=34%  Similarity=0.561  Sum_probs=37.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||||++|+++|..|++.|++|+|||+.+.+||.+..
T Consensus       390 ~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            48999999999999999999999999999999889986543

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.92  E-value=1.2e-09  Score=77.28  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|+.|++.|++|+|+|+.+..||.+
T Consensus        47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            589999999999999999999999999999988777633

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.92  E-value=4.2e-10  Score=78.34  Aligned_cols=35  Identities=31%  Similarity=0.498  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +||+|||+|++|+++|+.|++.|++|+|+|+.+.+
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~  142 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV  142 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcc
Confidence            58999999999999999999999999999997654

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.91  E-value=1.2e-09  Score=76.90  Aligned_cols=37  Identities=27%  Similarity=0.446  Sum_probs=33.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++||++|+.|++.|  .+|+|+|+.+..++
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~   44 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS   44 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCC
Confidence            69999999999999999999999  99999999765544

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.90  E-value=1.5e-09  Score=77.07  Aligned_cols=36  Identities=19%  Similarity=0.414  Sum_probs=32.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC------CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~------g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++||+||+.|++.      |.+|+|+||....+
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~   64 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLER   64 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTT
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCC
Confidence            6999999999999999999997      99999999976543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.90  E-value=1.1e-09  Score=74.76  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-----CcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-----VDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-----~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.|     .+|+|||+.+..|
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence            48999999999999999999999     9999999988776

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.89  E-value=1.3e-09  Score=80.42  Aligned_cols=40  Identities=33%  Similarity=0.537  Sum_probs=37.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++.|++|+|||+++.+||.+.
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            5899999999999999999999999999999888898665

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.89  E-value=1.4e-09  Score=79.02  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=32.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~   35 (130)
                      +||+|||||++|+++|+.|+++|. +|+|+|++...
T Consensus         5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~   40 (830)
T 1pj5_A            5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   40 (830)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence            589999999999999999999998 99999997653

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.88  E-value=2.2e-09  Score=64.48  Aligned_cols=33  Identities=42%  Similarity=0.743  Sum_probs=31.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ||++|||+|++|+.+|..|++.|.+|+++|+.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            589999999999999999999999999999976

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.88  E-value=1.1e-09  Score=71.74  Aligned_cols=38  Identities=34%  Similarity=0.566  Sum_probs=34.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+. .+||.+
T Consensus        15 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~   52 (335)
T 2a87_A           15 RDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGAL   52 (335)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCce
Confidence            48999999999999999999999999999984 567754

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.88  E-value=2.3e-09  Score=75.10  Aligned_cols=38  Identities=45%  Similarity=0.663  Sum_probs=35.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++|+++|+.|++.|.+|+|+|+.+.+||.
T Consensus       127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~  164 (572)
T 1d4d_A          127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN  164 (572)
T ss_dssp             CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            58999999999999999999999999999998888764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.88  E-value=1.1e-09  Score=76.99  Aligned_cols=31  Identities=35%  Similarity=0.526  Sum_probs=30.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|+
T Consensus       108 ~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          108 YDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             ccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            5899999999999999999999999999997

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.87  E-value=2.5e-09  Score=76.18  Aligned_cols=39  Identities=36%  Similarity=0.600  Sum_probs=36.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|++.|++|+|+|+.+..||.+
T Consensus       374 ~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~  412 (671)
T 1ps9_A          374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF  412 (671)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCee
Confidence            589999999999999999999999999999988888864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.87  E-value=2.9e-09  Score=75.03  Aligned_cols=36  Identities=31%  Similarity=0.676  Sum_probs=32.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~g   36 (130)
                      |||+|||||++|+.||..+++.|.+|+|+|++. .+|
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG   64 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIG   64 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccC
Confidence            699999999999999999999999999999974 444

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.87  E-value=2.9e-09  Score=78.94  Aligned_cols=38  Identities=32%  Similarity=0.691  Sum_probs=35.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++|+++|..|++.|+ +|+|||+.+.+||.
T Consensus       188 ~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~  226 (1025)
T 1gte_A          188 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL  226 (1025)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcc
Confidence            589999999999999999999999 79999998888885

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.87  E-value=1.6e-09  Score=70.08  Aligned_cols=37  Identities=30%  Similarity=0.548  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..|++.|++|+|+|+  ..||.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~   38 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQI   38 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCcee
Confidence            6899999999999999999999999999986  357654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.86  E-value=3e-09  Score=74.15  Aligned_cols=33  Identities=30%  Similarity=0.568  Sum_probs=31.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHH---CCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK---AGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~---~g~~v~v~E~~~   33 (130)
                      +||+|||||++|+++|..|++   .|.+|+|||+.+
T Consensus        26 ~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           26 DKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            589999999999999999999   999999999954

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.85  E-value=3.2e-09  Score=75.32  Aligned_cols=34  Identities=41%  Similarity=0.688  Sum_probs=31.5

Q ss_pred             CcEEEEccCHHHHHHHHHHH---H-CCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLA---K-AGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~---~-~g~~v~v~E~~~~   34 (130)
                      +||+|||+|++||+||+.|+   + .|.+|+|+||.+.
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            69999999999999999999   6 7999999999764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.84  E-value=3e-09  Score=75.07  Aligned_cols=37  Identities=24%  Similarity=0.501  Sum_probs=33.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC-CCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED-SLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~-~~gg   37 (130)
                      |||+|||||++|++||..|++.|.+|+|+|+.. .+|+
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            699999999999999999999999999999974 3454

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.83  E-value=1.7e-09  Score=74.54  Aligned_cols=39  Identities=38%  Similarity=0.635  Sum_probs=35.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++|+++|..|++. ++|+|||+++.+||.+.
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            4899999999999999999999 99999999988888654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.82  E-value=3.3e-09  Score=74.97  Aligned_cols=33  Identities=30%  Similarity=0.546  Sum_probs=31.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |||+|||||++|++||..|++.|.+|+|+|++.
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            589999999999999999999999999999974

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.81  E-value=4.6e-09  Score=71.60  Aligned_cols=36  Identities=22%  Similarity=0.591  Sum_probs=33.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.  |.+|+|+|+.+..|
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            4899999999999999999998  89999999988766

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.80  E-value=8.4e-09  Score=69.05  Aligned_cols=34  Identities=35%  Similarity=0.632  Sum_probs=32.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||+|++|+.+|..|++.|.+|+|+|+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            5999999999999999999999999999998763

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.79  E-value=6.4e-09  Score=70.84  Aligned_cols=36  Identities=28%  Similarity=0.378  Sum_probs=33.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.  |.+|+|+|+++.++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNIS   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            6999999999999999999998  99999999977554

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.78  E-value=4.8e-09  Score=71.67  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-C------CCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAK-A------GVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~------g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|.+ .      |.+|+|||+.+.+||.+
T Consensus         4 ~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~   49 (456)
T 1lqt_A            4 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV   49 (456)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcc
Confidence            489999999999999999999 7      99999999988888754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.77  E-value=6e-09  Score=72.25  Aligned_cols=37  Identities=30%  Similarity=0.548  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||||++|+++|..|++.|++|+|+|+  ..||.+
T Consensus       213 ~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~  249 (521)
T 1hyu_A          213 YDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQV  249 (521)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcc
Confidence            5899999999999999999999999999986  457654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.75  E-value=1.1e-08  Score=70.01  Aligned_cols=39  Identities=33%  Similarity=0.381  Sum_probs=35.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~   39 (130)
                      +||+|||+|++|+++|..|.+.|  .+|+|||+.+.+||.+
T Consensus         7 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~   47 (460)
T 1cjc_A            7 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV   47 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH
T ss_pred             ceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCcee
Confidence            58999999999999999999998  9999999988888754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.75  E-value=1.1e-08  Score=69.61  Aligned_cols=36  Identities=28%  Similarity=0.439  Sum_probs=33.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.  |.+|+|+|+.+..|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            5899999999999999999998  99999999977655

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.74  E-value=6.9e-09  Score=71.06  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.  |.+|+|||+++..+
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            4899999999999999999998  99999999987754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.73  E-value=1.2e-08  Score=69.44  Aligned_cols=37  Identities=27%  Similarity=0.506  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg   37 (130)
                      +||+|||+|++|+++|..|++.  +.+|+|+|+.+..++
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~   42 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSH   42 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcccc
Confidence            5899999999999999999998  889999999876654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.71  E-value=1.7e-08  Score=68.07  Aligned_cols=36  Identities=25%  Similarity=0.539  Sum_probs=32.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCc--EEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVD--VVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~--v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.|++  |+|+|+.+..+
T Consensus        10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~   47 (415)
T 3lxd_A           10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIP   47 (415)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCC
T ss_pred             CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCC
Confidence            4799999999999999999999987  99999977554

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.70  E-value=2.3e-08  Score=67.20  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~~g   36 (130)
                      .||+|||+|++|+++|..|++.|+  +|+|+|+.+..+
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~   39 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP   39 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC
Confidence            489999999999999999999998  899999977543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.70  E-value=1.5e-08  Score=71.07  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=32.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+..+
T Consensus        37 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           37 RKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4799999999999999999998  89999999987654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.69  E-value=1.8e-08  Score=67.77  Aligned_cols=36  Identities=28%  Similarity=0.423  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHH---CCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK---AGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~---~g~~v~v~E~~~~~g   36 (130)
                      .||+|||||++|+++|..|++   .|.+|+|+|+++..+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~   40 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSY   40 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCce
Confidence            479999999999999999999   899999999987543

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=98.69  E-value=2.4e-08  Score=70.63  Aligned_cols=44  Identities=23%  Similarity=0.381  Sum_probs=42.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      ||++|+|+|+.|...|..|++.|.+|+++|+++..||.+.+...
T Consensus         9 ~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l   52 (650)
T 1vg0_A            9 FDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSF   52 (650)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccH
Confidence            79999999999999999999999999999999999999888776

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.69  E-value=1.6e-08  Score=70.53  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=31.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ||++|||+|++|+.+|.+|++.|.+|+|+|+..
T Consensus         8 ~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~   40 (546)
T 1kdg_A            8 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   40 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             eeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            699999999999999999999999999999865

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.69  E-value=1.8e-08  Score=69.18  Aligned_cols=36  Identities=28%  Similarity=0.553  Sum_probs=32.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.  |.+|+|+|+.+..+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   74 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYS   74 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            4899999999999999999996  89999999977654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.68  E-value=1.4e-08  Score=69.85  Aligned_cols=36  Identities=14%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC---CcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG---VDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g---~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.|   .+|+|+|+++.++
T Consensus        36 ~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~   74 (490)
T 2bc0_A           36 SKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNIS   74 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence            58999999999999999999988   9999999977554

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.68  E-value=1.1e-08  Score=70.91  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=30.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E~~~   33 (130)
                      ||++|||+|.+|+.+|.+|++ .+++|+|+|+..
T Consensus        18 yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~   51 (526)
T 3t37_A           18 CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE   51 (526)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred             eeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence            799999999999999999998 689999999854

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.67  E-value=3.1e-08  Score=67.20  Aligned_cols=35  Identities=26%  Similarity=0.503  Sum_probs=31.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~~   35 (130)
                      +||+|||+|++|+++|..|++.|+  +|+|+|+.+..
T Consensus         5 ~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~   41 (431)
T 1q1r_A            5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI   41 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSC
T ss_pred             CcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCC
Confidence            589999999999999999999998  79999987654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.66  E-value=3.3e-08  Score=66.58  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=32.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|++.|+  +|+|+|+.+..+
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A            8 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence            589999999999999999999988  599999976543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.65  E-value=2.8e-08  Score=69.36  Aligned_cols=36  Identities=17%  Similarity=0.448  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      .||+|||||++|+++|..|++.  +.+|+|+|+.+..+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4899999999999999999998  88999999987664

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.64  E-value=2.4e-08  Score=66.40  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .|++|||+|++|+++|..|++.| +|+|+|+.+..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            38999999999999999999999 99999997653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.64  E-value=3.5e-08  Score=65.91  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~   33 (130)
                      +||+|||+|++|+++|..|++.|  .+|+++|+++
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            68999999999999999999998  4689999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.62  E-value=5.6e-08  Score=65.50  Aligned_cols=36  Identities=33%  Similarity=0.591  Sum_probs=32.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCc--EEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVD--VVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~--v~v~E~~~~~g   36 (130)
                      .||+|||+|++|+++|..|.+.|++  |+|+|+.+..+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~   40 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC
Confidence            3799999999999999999999987  99999977654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.61  E-value=4.1e-08  Score=67.66  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=32.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++|+++|..|.+.  +.+|+|||+.+..+
T Consensus        12 ~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A           12 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4899999999999999999887  88999999976554

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.60  E-value=2.1e-08  Score=69.82  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      ||++|||+|.+|+.+|.+|++ |.+|+|+|+.+..
T Consensus        27 yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           27 YDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             ccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            699999999999999999999 9999999986543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.58  E-value=3.6e-08  Score=69.17  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~~   34 (130)
                      ||++|||+|.+|+.+|..|++.+ .+|+|+|+.+.
T Consensus         7 yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            69999999999999999999987 79999998654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.58  E-value=4.3e-08  Score=66.56  Aligned_cols=34  Identities=26%  Similarity=0.608  Sum_probs=31.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHH---CCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK---AGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~---~g~~v~v~E~~~~   34 (130)
                      .||+|||||++|+++|..|++   .|.+|+|+|+++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            479999999999999999999   7999999999764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.55  E-value=9e-08  Score=66.17  Aligned_cols=36  Identities=31%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      ||++|||+|++|+++|..|++.|.+|+|+|+....+
T Consensus         6 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            689999999999999999999999999999876443

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.53  E-value=9.1e-08  Score=65.04  Aligned_cols=36  Identities=19%  Similarity=0.472  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~g   36 (130)
                      .+|+|||+|++|++||..|++.|  .+|+|+|+++...
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~   38 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   38 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            47999999999999999999987  4799999976543

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.51  E-value=7.2e-08  Score=67.73  Aligned_cols=33  Identities=27%  Similarity=0.576  Sum_probs=30.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~   33 (130)
                      ||++|||||.+|+.+|.+|++. +.+|+|+|+.+
T Consensus        20 yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           20 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            6999999999999999999975 89999999865

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.48  E-value=1.5e-07  Score=63.09  Aligned_cols=34  Identities=32%  Similarity=0.568  Sum_probs=29.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~   34 (130)
                      .+|+|||+|++|+++|..|.+.+  .+|+|||+++.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            36999999999999999998875  58999999764

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.46  E-value=1.8e-07  Score=64.80  Aligned_cols=33  Identities=30%  Similarity=0.494  Sum_probs=31.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ||++|||+|++|+.+|..|++.|.+|+|+|+..
T Consensus        12 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           12 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            589999999999999999999999999999864

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.45  E-value=6.5e-08  Score=67.74  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=31.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E~~~~~   35 (130)
                      ||++|||+|.+|+.+|.+|++ .+.+|+|+|+.+..
T Consensus         3 yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             EEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             cCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            799999999999999999998 69999999986544

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.44  E-value=2.3e-07  Score=62.16  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +|+|||+|++|+++|..|...+.+|+|||+.+..+
T Consensus        11 ~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~   45 (385)
T 3klj_A           11 KILILGAGPAGFSAAKAALGKCDDITMINSEKYLP   45 (385)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred             CEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence            68999999999999999977799999999987655

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.40  E-value=2.6e-07  Score=65.00  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=31.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E~~~~   34 (130)
                      ||++|||+|++|+++|..|++ .|.+|+|+|+...
T Consensus        25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~   59 (587)
T 1gpe_A           25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (587)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence            689999999999999999999 7999999998643

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.40  E-value=3e-07  Score=62.32  Aligned_cols=33  Identities=33%  Similarity=0.614  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~   34 (130)
                      +|+|||||++|+++|..|++.+  .+|+|+|+++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            5999999999999999999864  79999999764

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.37  E-value=2.5e-07  Score=64.58  Aligned_cols=35  Identities=34%  Similarity=0.440  Sum_probs=31.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~   35 (130)
                      ||++|||+|++|+++|..|++. |.+|+|+|+....
T Consensus        14 ~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            5899999999999999999998 8999999986543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.36  E-value=2.5e-07  Score=63.96  Aligned_cols=32  Identities=13%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|||+|++|+++|..|.+.+++|+|||+++
T Consensus        44 rVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           44 NVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             EEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            59999999999999999999999999999975

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.32  E-value=9.5e-08  Score=66.03  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=21.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV   24 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~   24 (130)
                      |||+|||+|++||++|+.|.+.|.
T Consensus        40 ~Dvi~IGaGp~gLa~A~~L~~~~~   63 (501)
T 4b63_A           40 HDLLCVGFGPASLAIAIALHDALD   63 (501)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHC
T ss_pred             CcEEEEcccHHHHHHHHHHHhcCC
Confidence            599999999999999999987644

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.88  E-value=2.1e-05  Score=45.21  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|.|..|...|..|.+.|++|+++|+++.
T Consensus         9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            589999999999999999999999999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.87  E-value=2.8e-05  Score=52.93  Aligned_cols=37  Identities=38%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      .+++|||+|++|+.+|..|++.|.+|+++|+.+.+..
T Consensus       150 ~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  186 (447)
T 1nhp_A          150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG  186 (447)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccc
Confidence            3689999999999999999999999999999776543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.87  E-value=2.5e-05  Score=45.64  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|..|+..|..|.+.|++|+++++++
T Consensus        21 ~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           21 YIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.80  E-value=3.4e-05  Score=44.25  Aligned_cols=32  Identities=28%  Similarity=0.387  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|..|...|..|.+.|++|+++|+++
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999999999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.80  E-value=3.5e-05  Score=43.91  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +++|+|+|..|...|..|.+.|++|+++|+++
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.70  E-value=6.4e-05  Score=50.35  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=33.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~  183 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLE  183 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence            689999999999999999999999999999877654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.67  E-value=9.7e-05  Score=43.00  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|..|...+..|.+.|++|+++|+++
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            58999999999999999999999999999963

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.66  E-value=6.4e-05  Score=51.38  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=32.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       173 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  207 (458)
T 1lvl_A          173 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL  207 (458)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc
Confidence            58999999999999999999999999999977654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.66  E-value=7.4e-05  Score=51.17  Aligned_cols=35  Identities=34%  Similarity=0.493  Sum_probs=31.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       171 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  205 (464)
T 2eq6_A          171 RLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL  205 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc
Confidence            58999999999999999999999999999976543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.63  E-value=5.9e-05  Score=48.75  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+-
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR  181 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            58999999999999999999999999999876553

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.63  E-value=8.3e-05  Score=50.73  Aligned_cols=34  Identities=32%  Similarity=0.658  Sum_probs=31.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|.+|+.+|..|++.|.+|+++|+.+.+
T Consensus       169 ~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          169 RLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            5899999999999999999999999999987654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.62  E-value=9.5e-05  Score=50.44  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=31.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       172 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  206 (455)
T 1ebd_A          172 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL  206 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence            58999999999999999999999999999976553

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.61  E-value=0.00012  Score=48.83  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+.+|..|.+.|.+|+++|+.+.+..
T Consensus       147 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  182 (384)
T 2v3a_A          147 RVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP  182 (384)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh
Confidence            589999999999999999999999999999765543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.60  E-value=0.00011  Score=48.88  Aligned_cols=35  Identities=37%  Similarity=0.474  Sum_probs=32.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  179 (367)
T 1xhc_A          145 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL  179 (367)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec
Confidence            58999999999999999999999999999977654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.58  E-value=8.2e-05  Score=44.58  Aligned_cols=32  Identities=25%  Similarity=0.194  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHC-CCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA-GVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~   33 (130)
                      .++|+|.|..|...|..|.+. |++|+++|+++
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            589999999999999999999 99999999865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.56  E-value=0.00012  Score=40.35  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      .++|+|+|..|...+..|.+.| ++|+++++++
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            5889999999999999999999 8999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.55  E-value=0.00014  Score=49.95  Aligned_cols=36  Identities=33%  Similarity=0.625  Sum_probs=32.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       185 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  220 (478)
T 1v59_A          185 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA  220 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc
Confidence            589999999999999999999999999999776543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.54  E-value=9.3e-05  Score=45.64  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            468999999999999999999999999999865

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.52  E-value=0.00016  Score=41.25  Aligned_cols=32  Identities=31%  Similarity=0.337  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|..|...+..|.+.|++|+++++++
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48999999999999999999999999998753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.51  E-value=0.00015  Score=49.40  Aligned_cols=35  Identities=31%  Similarity=0.400  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL  203 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh
Confidence            58999999999999999999999999999976543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.50  E-value=0.00012  Score=47.91  Aligned_cols=32  Identities=34%  Similarity=0.637  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..++..|++|+++|.++
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.45  E-value=0.00023  Score=47.91  Aligned_cols=36  Identities=36%  Similarity=0.554  Sum_probs=32.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++|+.+.+..
T Consensus       147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  182 (408)
T 2gqw_A          147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS  182 (408)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc
Confidence            589999999999999999999999999999776543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.45  E-value=0.00015  Score=46.78  Aligned_cols=33  Identities=30%  Similarity=0.601  Sum_probs=30.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+...
T Consensus       154 ~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          154 VLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             eEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            589999999999999999999999999998554

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.43  E-value=0.00022  Score=48.81  Aligned_cols=34  Identities=38%  Similarity=0.545  Sum_probs=31.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL  201 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            5899999999999999999999999999987654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.40  E-value=0.00016  Score=49.75  Aligned_cols=35  Identities=37%  Similarity=0.658  Sum_probs=31.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++|+.+.+.
T Consensus       188 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  222 (480)
T 3cgb_A          188 DVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIG  222 (480)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchh
Confidence            68999999999999999999999999999876554

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.38  E-value=0.0003  Score=48.50  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       196 ~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  230 (490)
T 2bc0_A          196 RVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL  230 (490)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchh
Confidence            58999999999999999999999999999976543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.37  E-value=0.00024  Score=48.85  Aligned_cols=35  Identities=34%  Similarity=0.504  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l  221 (482)
T 1ojt_A          187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM  221 (482)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc
Confidence            58999999999999999999999999999976553

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.36  E-value=0.00035  Score=47.90  Aligned_cols=35  Identities=31%  Similarity=0.495  Sum_probs=31.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       180 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  214 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVG  214 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccC
Confidence            58999999999999999999999999999976553

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.35  E-value=0.00034  Score=45.70  Aligned_cols=32  Identities=34%  Similarity=0.442  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|++.|.+|+++.|++
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            68999999999999999999999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.34  E-value=0.00032  Score=47.31  Aligned_cols=32  Identities=22%  Similarity=0.397  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|..|+.+|..+...|.+|+++|+++
T Consensus       192 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          192 KIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            58999999999999999999999999999865

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.34  E-value=0.0011  Score=44.71  Aligned_cols=35  Identities=46%  Similarity=0.599  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..+.+.|.+|+++|+.+.+.
T Consensus       154 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          154 NAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL  188 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence            58999999999999999999999999999977653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.33  E-value=0.00039  Score=48.02  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=32.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       176 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (492)
T 3ic9_A          176 SVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN  211 (492)
T ss_dssp             EEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            589999999999999999999999999999776543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.32  E-value=0.0003  Score=48.15  Aligned_cols=32  Identities=38%  Similarity=0.396  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|.+|+++|..|.+.|++|++.|...
T Consensus        11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            58999999999999999999999999999854

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.32  E-value=0.00037  Score=47.66  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus       173 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  207 (464)
T 2a8x_A          173 SIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL  207 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            58999999999999999999999999999976543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.30  E-value=0.00029  Score=45.24  Aligned_cols=32  Identities=34%  Similarity=0.514  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999999999999865

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.28  E-value=0.00043  Score=47.00  Aligned_cols=35  Identities=34%  Similarity=0.486  Sum_probs=31.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++|+.+.+.
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  185 (431)
T 1q1r_A          151 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL  185 (431)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc
Confidence            58999999999999999999999999999876543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.28  E-value=0.00045  Score=44.17  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=30.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            3689999999999999999999999999998653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00047  Score=47.40  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  221 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL  221 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc
Confidence            58999999999999999999999999999976543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.26  E-value=0.00049  Score=46.37  Aligned_cols=34  Identities=32%  Similarity=0.589  Sum_probs=31.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++|+.+.+
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          145 RLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            5899999999999999999999999999997655

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.25  E-value=0.00043  Score=47.12  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=32.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..+++.|.+|+++|+.+.+.
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll  183 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN  183 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCS
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeecccc
Confidence            58999999999999999999999999999977654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.24  E-value=0.00039  Score=45.22  Aligned_cols=32  Identities=31%  Similarity=0.583  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|++.|.+|+++.|++
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            68999999999999999999999999999864

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.24  E-value=0.00028  Score=48.26  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++|+.+.+.
T Consensus       179 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  213 (470)
T 1dxl_A          179 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV  213 (470)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence            58999999999999999999999999999976553

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.24  E-value=0.00063  Score=46.34  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=32.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++++.+.+..
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  185 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR  185 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch
Confidence            689999999999999999999999999998776544

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.23  E-value=0.00042  Score=45.64  Aligned_cols=34  Identities=47%  Similarity=0.750  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             EEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            5899999999999999999999999999986543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.23  E-value=0.00037  Score=46.65  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|..|+.+|..+...|.+|+++|+++
T Consensus       186 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          186 SALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             EEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.22  E-value=0.00049  Score=44.51  Aligned_cols=32  Identities=44%  Similarity=0.663  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..|++.|++|+++++++
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48899999999999999999999999999863

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=97.22  E-value=0.0004  Score=47.31  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      .|.|||.|.+|+++|..|.+.|++|+++|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            5899999999999999999999999999975543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.22  E-value=0.00047  Score=47.67  Aligned_cols=35  Identities=14%  Similarity=0.463  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  212 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL  212 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             eEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence            58999999999999999999999999999976543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.21  E-value=0.00069  Score=41.55  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=30.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus        21 ~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            588999999999999999999999999998654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.21  E-value=0.0005  Score=42.74  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|||+|..|...+..|.+.|.+|+|+++.
T Consensus        33 ~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           33 SVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            5899999999999999999999999999874

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.17  E-value=0.00053  Score=44.10  Aligned_cols=34  Identities=44%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|.+|+-+|..|++.+.+|+++++.+.+
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            5899999999999999999999999999987654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.17  E-value=0.0006  Score=43.87  Aligned_cols=34  Identities=35%  Similarity=0.544  Sum_probs=31.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|..|+-.|..|.+.|.+|+++++.+.+
T Consensus       145 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          145 EVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            5899999999999999999999999999987654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=97.17  E-value=0.00059  Score=47.08  Aligned_cols=33  Identities=33%  Similarity=0.583  Sum_probs=30.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.|.|||.|..|+..|..|++.|++|+++++++
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            368999999999999999999999999998753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.16  E-value=0.0004  Score=44.50  Aligned_cols=32  Identities=28%  Similarity=0.541  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|-.|+..+..|.+.|.+|+|++++.
T Consensus        15 ~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            58999999999999999999999999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.16  E-value=0.00067  Score=46.42  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..+.+.|.+|+++|+.+.+
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            5899999999999999999999999999987654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.16  E-value=0.00068  Score=44.13  Aligned_cols=32  Identities=38%  Similarity=0.635  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|+|||+|..|.+.|..|++.|+  +|++++++.
T Consensus         9 kI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            68999999999999999999998  999998864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.15  E-value=0.00066  Score=46.26  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=31.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++|+.+.+
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV  184 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSST
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCch
Confidence            5899999999999999999999999999987654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.15  E-value=0.00054  Score=44.26  Aligned_cols=32  Identities=28%  Similarity=0.479  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|++.|++|+++++++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58999999999999999999999999998854

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.14  E-value=0.00075  Score=46.21  Aligned_cols=35  Identities=34%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus       176 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  210 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA  210 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc
Confidence            58999999999999999999999999999976543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.13  E-value=0.00064  Score=45.89  Aligned_cols=32  Identities=31%  Similarity=0.478  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|.+|+.++..+...|.+|+++|+++
T Consensus       174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          174 KVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            58999999999999999999999999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.13  E-value=0.00016  Score=49.60  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|+|+|+|-.|...|..|...|++|+|+|+++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            368999999999999999999999999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.12  E-value=0.00063  Score=43.88  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=30.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+|.|||+|.-|.+.|..|++.|.+|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            368999999999999999999999999998863

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.12  E-value=0.00083  Score=46.99  Aligned_cols=34  Identities=32%  Similarity=0.550  Sum_probs=31.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            5899999999999999999999999999987654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.11  E-value=0.00058  Score=46.76  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|..|+..|..|++.|++|+++++++
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            68999999999999999999999999999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.11  E-value=0.00065  Score=46.03  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|+|.|..|...|..|.+.|.+|+++|+++.
T Consensus         6 ~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            589999999999999999999999999998753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.11  E-value=0.00081  Score=44.16  Aligned_cols=31  Identities=23%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +|.|||+|..|.+.|..|++.|++|++++++
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            6899999999999999999999999999874

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.10  E-value=0.0007  Score=42.72  Aligned_cols=32  Identities=34%  Similarity=0.491  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|+|||+|..|..+|..|++.|. +++++|++.
T Consensus        33 ~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           33 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             eEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            58999999999999999999998 899999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.09  E-value=0.0008  Score=45.12  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|.+|+.++..+...|.+|+++++++
T Consensus       174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          174 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.09  E-value=0.0009  Score=46.88  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+=.|..+++.|.+|+|++++..+
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L  258 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL  258 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEecccccc
Confidence            5899999999999999999999999999986544

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.07  E-value=0.00079  Score=44.28  Aligned_cols=32  Identities=38%  Similarity=0.606  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|+..|+ +|+++|.++
T Consensus        11 kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           11 KVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            58999999999999999999998 999999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.07  E-value=0.00095  Score=43.35  Aligned_cols=33  Identities=36%  Similarity=0.733  Sum_probs=29.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .+|.|||+|..|.+.|..|+..|+  +|+++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            368999999999999999999998  999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.06  E-value=0.001  Score=44.73  Aligned_cols=35  Identities=31%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..+.+.|.+|+++|+.+.+.
T Consensus       144 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          144 HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM  178 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence            58999999999999999999999999999876553

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.06  E-value=0.00079  Score=46.40  Aligned_cols=35  Identities=34%  Similarity=0.523  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  234 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL  234 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc
Confidence            58999999999999999999999999999876553

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.06  E-value=0.00068  Score=44.04  Aligned_cols=34  Identities=38%  Similarity=0.588  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus       161 ~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          161 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             eEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            5899999999999999999999999999987654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.05  E-value=0.001  Score=45.54  Aligned_cols=33  Identities=33%  Similarity=0.556  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .+.|||.|.-|+..|..|++.|++|+++++++.
T Consensus        10 ~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A           10 RIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             EEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999999999999999999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.05  E-value=0.0035  Score=40.50  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++++.+.+
T Consensus       157 ~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~  190 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY  190 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCcc
Confidence            5899999999999999999999999999986543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.05  E-value=0.001  Score=45.66  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV  222 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcc
Confidence            5899999999999999999999999999987654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.04  E-value=0.00098  Score=44.31  Aligned_cols=32  Identities=25%  Similarity=0.548  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|.+|+.++..+...|.+|+++++++
T Consensus       169 ~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          169 KVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999999999999999863

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.03  E-value=0.001  Score=42.65  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|.|||.|..|...|..|.+.|++|+++++++.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            689999999999999999999999999998754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.02  E-value=0.0011  Score=45.32  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++.+.+.
T Consensus       174 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  208 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL  208 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC
Confidence            58999999999999999999999999999876543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.01  E-value=0.001  Score=41.74  Aligned_cols=33  Identities=30%  Similarity=0.451  Sum_probs=30.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|.|||.|.-|.+.|..|.+.|++|+++++++.
T Consensus        21 kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           21 KIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            588999999999999999999999999998654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.00  E-value=0.0011  Score=43.01  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=30.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|.|||.|.-|...|..|.+.|++|+++++++.
T Consensus        23 ~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            589999999999999999999999999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.00  E-value=0.00085  Score=43.31  Aligned_cols=34  Identities=35%  Similarity=0.604  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++++.+.+
T Consensus       147 ~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (320)
T 1trb_A          147 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  180 (320)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc
Confidence            5899999999999999999999999999986654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.00  E-value=0.0013  Score=44.80  Aligned_cols=35  Identities=34%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..+++.|.+|+++++.+.+.
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  183 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL  183 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence            58999999999999999999999999999876653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.00  E-value=0.00083  Score=46.99  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       180 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          180 RVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             eEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            589999999999999999999999999999765

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.99  E-value=0.0013  Score=43.26  Aligned_cols=32  Identities=25%  Similarity=0.577  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus        16 kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           16 KISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            58999999999999999999999 999999864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.99  E-value=0.0011  Score=45.84  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|++.   |.+|+++|+.+.+.
T Consensus       193 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  230 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL  230 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc
Confidence            589999999999999999999   99999999976543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.99  E-value=0.001  Score=45.56  Aligned_cols=34  Identities=15%  Similarity=0.075  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|.+|+=.|..|++.|.+|+++++.+.+
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            5899999999999999999999999999986554

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.98  E-value=0.00083  Score=47.06  Aligned_cols=33  Identities=21%  Similarity=0.477  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       187 rV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          187 RVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             eEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            589999999999999999999999999999765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.98  E-value=0.0011  Score=45.71  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|.+.   |.+|+++|+.+.+.
T Consensus       189 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  226 (490)
T 1fec_A          189 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL  226 (490)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc
Confidence            589999999999999999999   99999999976543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.98  E-value=0.001  Score=46.69  Aligned_cols=33  Identities=27%  Similarity=0.555  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       193 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          193 RVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             EEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            589999999999999999999999999999764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.98  E-value=0.00092  Score=43.61  Aligned_cols=34  Identities=35%  Similarity=0.555  Sum_probs=31.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       157 ~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          157 DIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            5899999999999999999999999999987654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.98  E-value=0.00092  Score=43.34  Aligned_cols=34  Identities=32%  Similarity=0.571  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++++.+.+
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTL  187 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcC
Confidence            5899999999999999999999999999987644

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.97  E-value=0.0012  Score=46.63  Aligned_cols=31  Identities=32%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            5899999999999999999999999999986

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.97  E-value=0.0011  Score=43.26  Aligned_cols=32  Identities=38%  Similarity=0.691  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|.|||+|..|.+.|..|++.|+ +|+++|+++
T Consensus         6 kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            6 KIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            58999999999999999999998 999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.96  E-value=0.00075  Score=45.97  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=30.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|||.|..|+..|..|++.|++|+++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999999999999998853

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.96  E-value=0.0011  Score=42.96  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|...|..|.+.|++|+++++++
T Consensus         9 ~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            9 HVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.95  E-value=0.00095  Score=45.81  Aligned_cols=33  Identities=36%  Similarity=0.633  Sum_probs=30.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++.
T Consensus        56 kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           56 SVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            488999999999999999999999999998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.95  E-value=0.0013  Score=43.30  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|..|...|..|++.|++|+++++++
T Consensus         6 ki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            6 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            68999999999999999999999999998853

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.94  E-value=0.0016  Score=44.70  Aligned_cols=35  Identities=34%  Similarity=0.546  Sum_probs=31.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..|.+.|.+|+++++.+.+.
T Consensus       182 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  216 (476)
T 3lad_A          182 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL  216 (476)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            58999999999999999999999999999976543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.94  E-value=0.0014  Score=42.96  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHH-HHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLA-SAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~-~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|.+|++ +|..|.+.|++|.+.|+..
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            5889999999997 7888999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.94  E-value=0.0011  Score=45.67  Aligned_cols=33  Identities=24%  Similarity=0.527  Sum_probs=31.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA-GV-DVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~-g~-~v~v~E~~~~   34 (130)
                      +|.|||.|.-|+..|..|++. |+ +|+++++++.
T Consensus        20 kIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           20 KIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             EEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             EEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            589999999999999999999 99 9999998765

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.93  E-value=0.0017  Score=42.33  Aligned_cols=33  Identities=36%  Similarity=0.618  Sum_probs=29.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~   33 (130)
                      ++|.|||+|..|.+.|..|++.  |.+|+++|+++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999985  78999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.93  E-value=0.001  Score=44.20  Aligned_cols=32  Identities=41%  Similarity=0.617  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus        31 kI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           31 PIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999999999999999999999999998863

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.93  E-value=0.00087  Score=46.06  Aligned_cols=32  Identities=34%  Similarity=0.524  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..|++.|++|+++|+++
T Consensus        39 kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48899999999999999999999999999864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.91  E-value=0.0019  Score=42.77  Aligned_cols=33  Identities=33%  Similarity=0.711  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|+|||..|..++..+.+.|++|+++|.++.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            589999999999999999999999999997654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.91  E-value=0.0011  Score=42.80  Aligned_cols=31  Identities=35%  Similarity=0.545  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|.-|...|..|+ +|++|+++|+++
T Consensus        14 ~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           14 KVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             eEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            5889999999999999999 999999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.90  E-value=0.00038  Score=40.05  Aligned_cols=32  Identities=13%  Similarity=0.190  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|||+|..|...+..|.+.|.+|++++++.
T Consensus        23 ~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           23 KILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             EEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            58999999999999999999999999998854

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.90  E-value=0.0016  Score=45.38  Aligned_cols=35  Identities=20%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..+.+.|.+|+++|+.+.+.
T Consensus       216 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  250 (523)
T 1mo9_A          216 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK  250 (523)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence            58999999999999999999999999999876543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.90  E-value=0.0016  Score=43.48  Aligned_cols=32  Identities=25%  Similarity=0.501  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|..|+.+|..+...|.+|+++++++
T Consensus       168 ~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          168 SVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.89  E-value=0.0013  Score=42.93  Aligned_cols=31  Identities=35%  Similarity=0.545  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|.-|.+.|..|++.|++|+++ +++
T Consensus        21 kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           21 KVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            5899999999999999999999999999 543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.89  E-value=0.0012  Score=44.97  Aligned_cols=33  Identities=18%  Similarity=0.099  Sum_probs=30.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~   34 (130)
                      +|+|||+|.+|+=.|..|++.+.+ |+++++.+.
T Consensus       214 ~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             CEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             EEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            689999999999999999999999 999998654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.89  E-value=0.0018  Score=42.45  Aligned_cols=32  Identities=25%  Similarity=0.551  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus         6 kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            6 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            68999999999999999999998 999999754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.88  E-value=0.00094  Score=43.42  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|..|+-.|..|.+.|.+|+++++.+.+
T Consensus       154 ~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          154 RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF  187 (335)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            5899999999999999999999999999987654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.88  E-value=0.0023  Score=39.37  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||+|..|.+.|..|.+.|++|.+++++.
T Consensus        30 ~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.87  E-value=0.0019  Score=44.63  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-.|..+.+.|.+|+++|+.+.+.
T Consensus       184 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  218 (499)
T 1xdi_A          184 HLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL  218 (499)
T ss_dssp             SEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            58999999999999999999999999999976553

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.86  E-value=0.0018  Score=42.54  Aligned_cols=32  Identities=31%  Similarity=0.538  Sum_probs=29.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      ++|.|||+|.-|.+.|..|++.|++|++++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            36899999999999999999999999999885

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.86  E-value=0.0022  Score=41.01  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|||+|.+|.+++..|.+.|.+|+|+.|+..
T Consensus       120 ~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          120 NALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            589999999999999999999999999988643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.86  E-value=0.0017  Score=43.39  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|..|+.+|..+...|.+|+++++++
T Consensus       170 ~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          170 DVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999999999999999754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.86  E-value=0.0013  Score=42.65  Aligned_cols=34  Identities=41%  Similarity=0.561  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus       175 ~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          175 PLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            5899999999999999999999999999987654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.86  E-value=0.0011  Score=42.73  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=30.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|.|||.|.-|...|..|++.|++|+++++++.
T Consensus        17 ~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            589999999999999999999999999998764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.86  E-value=0.0012  Score=42.35  Aligned_cols=33  Identities=30%  Similarity=0.481  Sum_probs=30.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|.|||.|.-|...|..|.+.|++|+++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            689999999999999999999999999998754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.85  E-value=0.0018  Score=45.60  Aligned_cols=35  Identities=31%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  223 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM  223 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence            58999999999999999999999999999876544

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.85  E-value=0.0014  Score=42.84  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=29.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ++|.|||+|..|.+.|..|++.|++|+++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            3689999999999999999999999999998

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.85  E-value=0.0025  Score=44.36  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            5899999999999999999999999999984

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.85  E-value=0.0015  Score=43.84  Aligned_cols=32  Identities=34%  Similarity=0.489  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|.+|..+|..+...|. +|.++|++.
T Consensus       190 kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          190 SIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            58999999999999999999999 999999863

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.85  E-value=0.0017  Score=42.17  Aligned_cols=32  Identities=31%  Similarity=0.610  Sum_probs=29.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+|.|||+|..|.+.|..|+ .|.+|+++.|++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            36899999999999999999 999999998864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.84  E-value=0.0026  Score=43.86  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            58999999999999999999999999999854

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.81  E-value=0.0013  Score=43.02  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|..|...|..|.+.|++|+++++++
T Consensus        33 ~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           33 KITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            58999999999999999999999999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.80  E-value=0.0022  Score=39.12  Aligned_cols=33  Identities=33%  Similarity=0.522  Sum_probs=29.9

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++.||| +|..|...|..|.+.|++|.++++++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999 99999999999999999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.79  E-value=0.0014  Score=44.64  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=30.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~   35 (130)
                      +|+|||+|.+|+=+|..|.+.  +.+|+++++.+..
T Consensus       229 ~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          229 KIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             eEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            589999999999999999998  8999999987643

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.79  E-value=0.0055  Score=39.55  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..|.+.+.+|+++++.+..
T Consensus       156 ~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~  189 (332)
T 3lzw_A          156 RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKF  189 (332)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             EEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcC
Confidence            5899999999999999999999999999987654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.79  E-value=0.0018  Score=42.34  Aligned_cols=33  Identities=30%  Similarity=0.612  Sum_probs=29.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .+|.|||+|..|.+.|..|++.|+  +|+++|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            368999999999999999999999  999998863

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.79  E-value=0.0023  Score=40.80  Aligned_cols=31  Identities=16%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .++|+|+|..|.++|..|.+.|.+|+++.|+
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            4789999999999999999999999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.78  E-value=0.0016  Score=45.29  Aligned_cols=34  Identities=44%  Similarity=0.526  Sum_probs=31.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       357 ~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  390 (521)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCEEEEEEeCccc
Confidence            5899999999999999999999999999987654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.75  E-value=0.0025  Score=43.66  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~   34 (130)
                      +|+|||+|.+|+-+|..+.+.|. +|+++++.+.
T Consensus       266 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          266 HVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             EEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            58999999999999999999998 5999988654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.75  E-value=0.0022  Score=41.65  Aligned_cols=32  Identities=38%  Similarity=0.518  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|...|..|.+.|++|+++++++
T Consensus        11 ~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A           11 DVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.73  E-value=0.0019  Score=44.67  Aligned_cols=32  Identities=44%  Similarity=0.566  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus         7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999999999999864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.73  E-value=0.0026  Score=40.49  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.|.|||+|..|.+.|..|.+.|++|+++++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999999999999998864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.72  E-value=0.0016  Score=44.37  Aligned_cols=31  Identities=23%  Similarity=0.484  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|..|+..|..|++ |++|+++++++
T Consensus        38 kIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           38 KITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            58999999999999999998 99999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.72  E-value=0.0015  Score=43.03  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|..|+-.|..|.+.|.+|+++++.+.+
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            5899999999999999999999999999987654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=96.70  E-value=0.0024  Score=43.80  Aligned_cols=35  Identities=34%  Similarity=0.616  Sum_probs=31.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA-GVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~-g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..+.+. |.+|+++|+.+.+.
T Consensus       161 ~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l  196 (472)
T 3iwa_A          161 KAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIM  196 (472)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccc
Confidence            589999999999999999999 99999999876543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.70  E-value=0.0031  Score=41.05  Aligned_cols=32  Identities=31%  Similarity=0.584  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|..|...|..++..|+ +++++|.+.
T Consensus         4 kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            68999999999999999999997 899999754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.69  E-value=0.0021  Score=41.98  Aligned_cols=32  Identities=22%  Similarity=0.170  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      +|.|||.|.-|.+.|..|++.| ++|+++++++
T Consensus        26 ~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           26 TIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             eEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            5899999999999999999999 9999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.69  E-value=0.0022  Score=41.80  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .|.|||.|..|.+.|..|.+.|+  +|+++++++
T Consensus        35 kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           35 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            58999999999999999999999  999999865

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.69  E-value=0.0023  Score=42.60  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|...|..|.+.|++|+++++++
T Consensus        24 kIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           24 QIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.68  E-value=0.0026  Score=40.94  Aligned_cols=35  Identities=40%  Similarity=0.539  Sum_probs=31.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+-+|..|.+.|.+|+++++.+...
T Consensus       156 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~  190 (323)
T 3f8d_A          156 VVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK  190 (323)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC
Confidence            58999999999999999999999999999876543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.68  E-value=0.0025  Score=41.24  Aligned_cols=32  Identities=28%  Similarity=0.593  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus        38 ~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           38 AVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            58999999999999999999997 788998754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.68  E-value=0.003  Score=41.00  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|.|||+|..|...|..|.+.|++|+++++++.
T Consensus        32 ~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            589999999999999999999999999998643

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.67  E-value=0.0024  Score=42.76  Aligned_cols=31  Identities=32%  Similarity=0.446  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|+|+|.+|..+|..|...|. +|.++|+.
T Consensus       194 kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          194 KVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            58999999999999999999998 79999986

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.67  E-value=0.002  Score=41.73  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=29.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      ++|.|||+|..|.+.|..|+..+.  +++++|+++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            468999999999999999999988  899998754

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.67  E-value=0.0027  Score=40.75  Aligned_cols=33  Identities=33%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+|.|||.|..|...|..|.+.|++|+++++++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            368999999999999999999999999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.67  E-value=0.0016  Score=40.25  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEE-EecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVL-YEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v-~E~~~   33 (130)
                      +|.|||+|..|.+.|..|.+.|++|++ +++++
T Consensus        25 kI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           25 TYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            689999999999999999999999998 88764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.66  E-value=0.0033  Score=41.11  Aligned_cols=32  Identities=34%  Similarity=0.578  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|..|++.|+.|+..+.  +++++|.+.
T Consensus         9 KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            9 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            68999999999999999999987  899998754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.66  E-value=0.0028  Score=40.96  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.||| .|..|.+.|..|.+.|++|.++++++
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            589999 99999999999999999999999865

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.66  E-value=0.0035  Score=40.42  Aligned_cols=32  Identities=34%  Similarity=0.432  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||.|..|..+|..|...|.+|++++++.
T Consensus       157 ~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          157 NVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.65  E-value=0.004  Score=42.82  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +++|||+|..|+-.|..+++.|.+|+++++..
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            58999999999999999999999999999843

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.65  E-value=0.0035  Score=40.54  Aligned_cols=32  Identities=34%  Similarity=0.466  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||.|..|..+|..|...|.+|++++++.
T Consensus       159 ~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          159 QVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58899999999999999999999999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.64  E-value=0.0036  Score=41.07  Aligned_cols=32  Identities=31%  Similarity=0.559  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|+..|+ +++++|.++
T Consensus         9 kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            9 KIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            68999999999999999999998 999999865

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.64  E-value=0.0031  Score=41.60  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|||+|..|..+|..|+..|. +++++|.+.
T Consensus        36 ~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           36 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            58999999999999999999998 688888743

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.64  E-value=0.0026  Score=42.00  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|..|.+.|..|.+.|++|.++++++
T Consensus        10 kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A           10 PVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58899999999999999999999999999865

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.63  E-value=0.0034  Score=43.19  Aligned_cols=34  Identities=26%  Similarity=0.550  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..+.+.|.+|+++++.+.+
T Consensus       193 ~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          193 SIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            5899999999999999999999999999987654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.63  E-value=0.002  Score=43.52  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=29.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|||.|..|+..|..|++ |++|+++++++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            368999999999999999999 99999998854

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.63  E-value=0.0028  Score=40.62  Aligned_cols=34  Identities=35%  Similarity=0.577  Sum_probs=31.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..|.+.+.+|+++++.+..
T Consensus       149 ~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          149 EVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             EEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            5899999999999999999999999999987654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.62  E-value=0.0036  Score=42.83  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=31.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-.|..+.+.|.+|+++++.+.+
T Consensus       172 ~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~  205 (463)
T 4dna_A          172 SILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI  205 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            5899999999999999999999999999987654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.62  E-value=0.0027  Score=41.23  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC--CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG--VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|++.|  .+|++++++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6899999999999999999999  6899998864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.61  E-value=0.0025  Score=44.00  Aligned_cols=32  Identities=31%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|..|.++|..|+..|.+|++.|+++
T Consensus       267 tVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          267 VAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            47899999999999999999999999998864

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.61  E-value=0.0046  Score=37.66  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.|+|.|+ |..|...+..|.+.|++|+++.|++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            36899995 9999999999999999999998864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.61  E-value=0.0038  Score=43.85  Aligned_cols=34  Identities=29%  Similarity=0.452  Sum_probs=31.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|+|+|..|...|..|.+.|.+|+++|+++..
T Consensus       350 ~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          350 LIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            5899999999999999999999999999998754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.60  E-value=0.0031  Score=39.79  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=29.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      ..|.|||+|..|.+.|..|.+.| ++|.++++++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            36899999999999999999999 9999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.60  E-value=0.003  Score=40.91  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|||+|.+|.++|..|.+.|. +|+|+.|+.
T Consensus       143 ~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          143 RILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             EEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            48999999999999999999998 899998853

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.59  E-value=0.0033  Score=43.14  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|||+|..|...+..|.+.|.+|+|+++.
T Consensus        14 ~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           14 DCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            4899999999999999999999999999874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.59  E-value=0.0009  Score=41.60  Aligned_cols=32  Identities=31%  Similarity=0.273  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|+|..|...|..|.+.|+ |+++|+++.
T Consensus        11 ~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A           11 HVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             EEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             EEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            58999999999999999999999 999998653

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.58  E-value=0.0045  Score=39.20  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|||+|-+|.+++..|.+.|. +++|++|+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            47899999999999999999998 899998864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.58  E-value=0.0029  Score=42.99  Aligned_cols=32  Identities=31%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|.|..|..+|..|...|.+|+++|+++
T Consensus       222 tV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          222 QVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999999999999999999999999865

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.57  E-value=0.0054  Score=39.30  Aligned_cols=35  Identities=34%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      ++|+|.|| |..|...+..|.++|++|+++-|++..
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            47899997 999999999999999999999886544

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.57  E-value=0.0033  Score=41.06  Aligned_cols=31  Identities=45%  Similarity=0.767  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      +|.|||+|..|.+.|+.++..|+ +++++|.+
T Consensus        10 kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A           10 KVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            58999999999999999999999 99999986

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.56  E-value=0.0027  Score=40.52  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|+|.+|.++|..|.+.|.+|+|+.|+.
T Consensus       121 ~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          121 HVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             EEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999998863

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.55  E-value=0.0028  Score=43.91  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||.|..|..+|..+...|.+|+++|+++
T Consensus       276 tV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          276 KVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48999999999999999999999999999864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.54  E-value=0.0043  Score=39.57  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .|.|||.|..|.+.|..|.+.|+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            58999999999999999999998  899998864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.53  E-value=0.0033  Score=40.42  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|..|...|..|.+.|++|.++++++
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999999999999998864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.53  E-value=0.0059  Score=38.87  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|.|+|..|...+..|.+.|++|+++.|+..
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            589999999999999999999999999988643

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.52  E-value=0.0016  Score=43.21  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999999999999999999999998753

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.52  E-value=0.0048  Score=40.43  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|.|||+|..|.+.|..|+..++ +++++|.++
T Consensus         7 kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            7 KITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            58999999999999999999988 999998765

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.52  E-value=0.0034  Score=40.28  Aligned_cols=32  Identities=16%  Similarity=0.123  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|||+|.+|.+++..|.+.|. +|+|+.|+.
T Consensus       119 ~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          119 YILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            58999999999999999999998 899998864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.51  E-value=0.0041  Score=42.96  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|...|..|++.|++|+++++++
T Consensus         4 ~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            68999999999999999999999999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.50  E-value=0.0046  Score=39.61  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+ |..|.+.|..|.+.|++|+++++++
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            5889999 9999999999999999999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.50  E-value=0.0038  Score=39.92  Aligned_cols=32  Identities=28%  Similarity=0.550  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|||+|..|.+.|..|.+.|.+|++++|+.
T Consensus       131 ~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          131 SILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            58999999999999999999999999998863

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.49  E-value=0.0038  Score=40.65  Aligned_cols=31  Identities=32%  Similarity=0.419  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      +|.|||.|.-|...|..|.+.|+ +|++++++
T Consensus        26 ~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           26 KLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            58899999999999999999999 99999985

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.48  E-value=0.0027  Score=43.39  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|-.||..|..+++.|++|+.+|-++
T Consensus        23 ~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           23 SLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58899999999999999999999999998653

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.48  E-value=0.0035  Score=40.06  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|..|...|..|.+ |++|+++++++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            68999999999999999999 99999999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.0051  Score=42.70  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|.-|.+.|..|++.|++|+++++++
T Consensus        12 ~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           12 DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.48  E-value=0.0029  Score=45.88  Aligned_cols=32  Identities=38%  Similarity=0.561  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus       314 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             EEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            48999999999999999999999999999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.47  E-value=0.0037  Score=39.47  Aligned_cols=31  Identities=45%  Similarity=0.590  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|++.|. +++++|.+
T Consensus        30 ~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           30 QVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            58999999999999999999998 78888764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.46  E-value=0.0059  Score=37.30  Aligned_cols=33  Identities=27%  Similarity=0.447  Sum_probs=29.7

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.|+|.|+ |..|...+..|.+.|++|+++.|++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            36899997 9999999999999999999998863

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.46  E-value=0.0047  Score=42.71  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|.+.|..|.+.|++|+++++++
T Consensus         6 kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            6 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             EEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            68999999999999999999999999999865

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.45  E-value=0.0045  Score=40.44  Aligned_cols=33  Identities=39%  Similarity=0.591  Sum_probs=29.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +.|.|||+|..|.+.|+.++..+.  +++++|.++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            468999999999999999999887  899999865

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.44  E-value=0.0057  Score=40.29  Aligned_cols=32  Identities=41%  Similarity=0.517  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|..|.+.|..|.+.|++|+++++++
T Consensus        18 ~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           18 KVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             EEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            58999999999999999999999999998864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.44  E-value=0.0046  Score=42.70  Aligned_cols=32  Identities=28%  Similarity=0.535  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|...|..|++.|++|+++++++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            68999999999999999999999999999853

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.44  E-value=0.0032  Score=41.98  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-------CcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-------VDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-------~~v~v~E~~~~   34 (130)
                      .|.|||+|.-|.+.|..|++.|       ++|+++++++.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            5899999999999999999999       99999988654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.42  E-value=0.0047  Score=38.91  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC----CcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG----VDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g----~~v~v~E~~~~~   35 (130)
                      .|.|||+|.-|.+.|..|.+.|    ++|.++++++..
T Consensus         6 ~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            6 KLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            5899999999999999999999    799999987543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.42  E-value=0.0057  Score=39.97  Aligned_cols=31  Identities=19%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .++|+|+|-+|.++|..|++.|. +|+|+.|+
T Consensus       156 ~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          156 KMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             EEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            47999999999999999999998 89999886

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.41  E-value=0.0045  Score=41.11  Aligned_cols=31  Identities=26%  Similarity=0.620  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|++.|. +++++|.+
T Consensus       120 ~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          120 KVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            58999999999999999999998 78899875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.41  E-value=0.0052  Score=38.53  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC----cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV----DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~----~v~v~E~~~   33 (130)
                      .|.|||.|.-|.+.|..|.+.|+    +|.++++++
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            68999999999999999999998    999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.40  E-value=0.0037  Score=40.25  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|..|...|..|.+.|++|+++++++
T Consensus         6 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             EEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999999999999999999999999998854

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.38  E-value=0.0048  Score=39.22  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|.|+|..|...+..|.+.|++|+++.|++
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            58999999999999999999999999998865

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.34  E-value=0.0036  Score=43.25  Aligned_cols=31  Identities=19%  Similarity=0.402  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~   32 (130)
                      +|.|||.|..|+..|..|++.  |++|++++++
T Consensus        11 kI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            589999999999999999998  7999999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.34  E-value=0.0041  Score=42.96  Aligned_cols=32  Identities=22%  Similarity=0.458  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|.+.|..|++.|++|+++++++
T Consensus        17 ~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             eEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            68999999999999999999999999998863

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.34  E-value=0.0053  Score=39.90  Aligned_cols=32  Identities=28%  Similarity=0.693  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|..|...|+.+...|+  +++++|.+.
T Consensus        16 kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           16 KITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            58999999999999999999998  999999865

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.34  E-value=0.0035  Score=40.56  Aligned_cols=30  Identities=30%  Similarity=0.347  Sum_probs=28.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHC-----C-CcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKA-----G-VDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~-----g-~~v~v~E~   31 (130)
                      +|.|||+|..|.+.|..|++.     | ++|+++++
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            589999999999999999999     9 99999987

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.34  E-value=0.0075  Score=37.29  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=29.3

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|.|+ |..|...+..|.+.|++|+++.|++
T Consensus        23 ~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           23 RVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             eEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            5889997 9999999999999999999998864

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.33  E-value=0.0065  Score=39.68  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC----CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG----VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g----~~v~v~E~~~   33 (130)
                      +|.|||+|.-|.+.|..|.+.|    ++|+++++++
T Consensus        24 kI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           24 SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            5899999999999999999999    7999999865

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.33  E-value=0.0065  Score=39.11  Aligned_cols=32  Identities=28%  Similarity=0.451  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|+|+|-+|.+++..|.+.|. +|+|+.|+.
T Consensus       129 ~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            47999999999999999999998 699998853

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.33  E-value=0.007  Score=38.34  Aligned_cols=32  Identities=34%  Similarity=0.606  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|||+|..|.+.|..|.+.|.+|++++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999999999999999999998863

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.33  E-value=0.0028  Score=41.76  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC-------CcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG-------VDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g-------~~v~v~E~~~~   34 (130)
                      +|.|||+|.-|.+.|..|++.|       ++|+++++++.
T Consensus        10 kI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            5899999999999999999998       89999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.32  E-value=0.0052  Score=42.18  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHH--------------------HCCC-cEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLA--------------------KAGV-DVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~--------------------~~g~-~v~v~E~~~~   34 (130)
                      +++|||+|..|+-+|..|+                    +.|. +|+|+++...
T Consensus       147 ~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          147 TAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             EEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             EEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            5899999999999999999                    5677 7999998654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.32  E-value=0.0066  Score=40.47  Aligned_cols=31  Identities=26%  Similarity=0.249  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus       175 tV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          175 AVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5899999999999999999999999999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.32  E-value=0.0055  Score=40.26  Aligned_cols=32  Identities=34%  Similarity=0.676  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|..|+..|.  +++++|.+.
T Consensus         7 kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            7 KVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            58999999999999999999987  899998753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.31  E-value=0.0032  Score=40.05  Aligned_cols=32  Identities=16%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +++|||+|..|+-.|..|.+.| +|+++++.+.
T Consensus       143 ~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          143 KIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             EEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             EEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            5899999999999999999999 9999987543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.30  E-value=0.0057  Score=39.35  Aligned_cols=32  Identities=19%  Similarity=0.193  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|+|+|-+|.+++..|.+.|. +|+|+.|+.
T Consensus       124 ~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          124 ICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             EEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            58999999999999999999998 899998854

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.29  E-value=0.004  Score=42.83  Aligned_cols=32  Identities=22%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~   33 (130)
                      +|.|||.|..|+..|..|++.  |++|+++++++
T Consensus         7 kI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            589999999999999999999  89999998753

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.29  E-value=0.0055  Score=41.73  Aligned_cols=32  Identities=31%  Similarity=0.310  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||.|..|..+|..|...|.+|+++|+++
T Consensus       213 tVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          213 TACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            58999999999999999999999999999864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.28  E-value=0.0082  Score=39.51  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .+.|||.|..|...|..|...|.+|++++++..
T Consensus       152 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          152 TIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            488999999999999999999999999998653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.28  E-value=0.0054  Score=41.40  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|||+|..|..++..|...|. +|++++++.
T Consensus       169 ~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          169 TVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            48999999999999999999998 899998854

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.28  E-value=0.0089  Score=38.30  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC---cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV---DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~---~v~v~E~~~   33 (130)
                      .|.|||+|.-|.+.|..|.+.|+   +|.++++++
T Consensus         5 ~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            5 NITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            58999999999999999999998   999999865

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.27  E-value=0.0038  Score=45.22  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus       316 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          316 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.27  E-value=0.0068  Score=38.32  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~   33 (130)
                      .|.|||+|..|...|..|.+.|++ |.++++++
T Consensus        12 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            589999999999999999999998 88998864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.27  E-value=0.0041  Score=42.40  Aligned_cols=32  Identities=34%  Similarity=0.588  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.-|||.|--|+..|..|++.|++|+++|+++
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46799999999999999999999999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.26  E-value=0.0091  Score=35.86  Aligned_cols=33  Identities=27%  Similarity=0.551  Sum_probs=29.6

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|.|+ |..|...+..|.+.|++|+++.|++.
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            5899997 99999999999999999999988643

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.25  E-value=0.0081  Score=39.21  Aligned_cols=31  Identities=19%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .++|+|+|-+|.+++..|.+.|. +|+|+.|+
T Consensus       150 ~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          150 TMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            47999999999999999999998 79999886

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.24  E-value=0.0062  Score=41.68  Aligned_cols=32  Identities=38%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|||.|..|..+|..+...|.+|+++|+++
T Consensus       249 TVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          249 VAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999999999999999999999998864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.22  E-value=0.0081  Score=38.43  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|+|+|-+|.+++..|.+.|. +|+|+.|+.
T Consensus       122 ~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          122 RVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            47899999999999999999996 899998753

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.22  E-value=0.0036  Score=46.78  Aligned_cols=34  Identities=24%  Similarity=0.192  Sum_probs=31.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||+|..|+-+|..|.+.|.+|+|+|+.+.+
T Consensus       286 ~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~  319 (965)
T 2gag_A          286 RIAVATTNDSAYELVRELAATGGVVAVIDARSSI  319 (965)
T ss_dssp             SEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC
T ss_pred             eEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc
Confidence            5899999999999999999999999999987654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.22  E-value=0.0059  Score=44.27  Aligned_cols=32  Identities=22%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             cEEEEc--cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG--GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG--~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|||  +|..|+-+|..|++.|.+|+++++.+
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             eEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            589999  99999999999999999999999865

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.21  E-value=0.007  Score=42.92  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus       328 rVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          328 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            58999999999999999999998 788998753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.20  E-value=0.0067  Score=45.66  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|+|||+|..|+=+|..+.+.|. +|+++++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            58999999999999999999997 899999865

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.20  E-value=0.008  Score=38.65  Aligned_cols=32  Identities=13%  Similarity=0.130  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|+|+|-+|.+++..|.+.|. +|+|+.|+.
T Consensus       128 ~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          128 TILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             EEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            47899999999999999999996 899998853

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=96.19  E-value=0.0056  Score=41.18  Aligned_cols=36  Identities=31%  Similarity=0.614  Sum_probs=31.6

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCC---cEEEEecCC-CCCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGV---DVVLYEKED-SLGG   37 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~---~v~v~E~~~-~~gg   37 (130)
                      .|+|||+ |.+|+.|+..+...|.   +|+++|.+. ..|+
T Consensus       216 kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~  256 (394)
T 2qrj_A          216 TVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGG  256 (394)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCS
T ss_pred             eEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCC
Confidence            5899999 9999999999999998   999999865 4455

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.19  E-value=0.009  Score=39.34  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|..|+.++..+...|.+|+++++++
T Consensus       179 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~  210 (348)
T 3two_A          179 KVGVAGFGGLGSMAVKYAVAMGAEVSVFARNE  210 (348)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            48899999999999999988999999988654

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.19  E-value=0.0094  Score=39.87  Aligned_cols=32  Identities=22%  Similarity=0.477  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|..|...+..+.+.|++|++++.++
T Consensus        16 ~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           16 TIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            48999999999999999999999999998754

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.18  E-value=0.0068  Score=39.56  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCC--CcEEEEecCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAG--VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g--~~v~v~E~~~   33 (130)
                      ++|+|||+ |..|.+.+..|+..+  .+++++|.+.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            46899998 999999999999888  5899998865

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.17  E-value=0.0073  Score=39.43  Aligned_cols=32  Identities=34%  Similarity=0.728  Sum_probs=28.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .|.|||+|..|.+.|+.+...+.  +++++|.+.
T Consensus         8 kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            58999999999999999998875  799998753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.17  E-value=0.0088  Score=41.34  Aligned_cols=33  Identities=30%  Similarity=0.546  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHH----CCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAK----AGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~----~g~~v~v~E~~~~   34 (130)
                      +++|||+|..|+-+|..|++    .|.+|+++++.+.
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~  218 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG  218 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence            58999999999999999987    4789999987643

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.17  E-value=0.0066  Score=42.96  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|++.|. +++++|.+
T Consensus       329 kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          329 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            58999999999999999999998 78899864

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.16  E-value=0.008  Score=39.13  Aligned_cols=32  Identities=28%  Similarity=0.593  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|..|.+.|+.++..++ +++++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999998888 699999764

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.16  E-value=0.0077  Score=39.64  Aligned_cols=32  Identities=22%  Similarity=0.426  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .|.|||+|..|.+.|+.++..|+  +++++|.+.
T Consensus        23 kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           23 KITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             EEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            58999999999999999999987  899998753

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.16  E-value=0.0075  Score=39.61  Aligned_cols=31  Identities=19%  Similarity=0.463  Sum_probs=28.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~   32 (130)
                      .|.|||+|..|.+.|+.|...+.  +++++|.+
T Consensus        11 kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A           11 KVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            58999999999999999999887  89999874

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=96.15  E-value=0.004  Score=41.85  Aligned_cols=29  Identities=31%  Similarity=0.423  Sum_probs=27.1

Q ss_pred             cEEEEccCHHHHHHHHHHHH-CCCcEEEEe
Q 037740            2 QVAVIGGGISGLASAFVLAK-AGVDVVLYE   30 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E   30 (130)
                      +|.|||+|..|.+.|..|++ .|++|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            58999999999999999988 599999998

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.14  E-value=0.0076  Score=39.37  Aligned_cols=31  Identities=29%  Similarity=0.605  Sum_probs=27.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~   32 (130)
                      +|.|||+|..|.+.|..|+..+.  +++++|.+
T Consensus         8 KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            8 KVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            68999999999999999998885  89999864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.14  E-value=0.0071  Score=38.18  Aligned_cols=30  Identities=33%  Similarity=0.295  Sum_probs=28.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .|.|||.|.-|.+.|..|.+.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            688999999999999999999999999876

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.13  E-value=0.011  Score=37.94  Aligned_cols=31  Identities=35%  Similarity=0.552  Sum_probs=28.6

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .++|+| +|.+|.+++..|.+.|.+|+++.|+
T Consensus       121 ~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          121 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            478999 9999999999999999999999885

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.13  E-value=0.008  Score=38.44  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .++|||+|-++.+++..|.+.|. +|+|+.|+
T Consensus       121 ~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          121 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             CEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            58999999999999999999997 79999885

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.10  E-value=0.0096  Score=40.65  Aligned_cols=31  Identities=29%  Similarity=0.364  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|+..|. +++|+|.+
T Consensus        42 ~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D   73 (434)
T 1tt5_B           42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   73 (434)
T ss_dssp             CEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            68999999999999999999998 78899864

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.09  E-value=0.0096  Score=41.05  Aligned_cols=32  Identities=22%  Similarity=0.436  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||.|.-|.+.|..|++.|++|+++++++
T Consensus         7 ~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            7 NFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            68999999999999999999999999998853

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.08  E-value=0.0016  Score=40.72  Aligned_cols=31  Identities=23%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +|.|||.|..|.+.|..|.++|++|+++++.
T Consensus         8 kI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            8 RVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             EEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            5899999999999999999999999999874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.05  E-value=0.0067  Score=39.51  Aligned_cols=30  Identities=27%  Similarity=0.427  Sum_probs=27.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +|+|||+|.+|+-+|..|++.+ +|+++.+.
T Consensus       165 ~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          165 RVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             EEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            5899999999999999999998 69999875

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.05  E-value=0.012  Score=38.80  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .+.|||.|..|...|..+...|.+|.+++++..
T Consensus       166 ~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~  198 (333)
T 3ba1_A          166 RVGIIGLGRIGLAVAERAEAFDCPISYFSRSKK  198 (333)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCch
Confidence            588999999999999999999999999998654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.05  E-value=0.0096  Score=39.66  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=28.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|..|+.++..+...|. +|+++++++
T Consensus       196 ~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~  228 (378)
T 3uko_A          196 NVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDS  228 (378)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSCT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            58999999999999999888898 799998644

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.04  E-value=0.0098  Score=39.08  Aligned_cols=32  Identities=38%  Similarity=0.418  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|..|...|..+...|++|++++++.
T Consensus       157 ~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          157 TVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            48899999999999999999999999999754

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.04  E-value=0.013  Score=39.17  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|||+|..|...+..+.+.|++|++++.++.
T Consensus        14 ~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           14 TIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            589999999999999999999999999987543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.04  E-value=0.011  Score=39.29  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|..|+.++..+...|.+|+++++++
T Consensus       190 ~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~  221 (366)
T 1yqd_A          190 HIGIVGLGGLGHVAVKFAKAFGSKVTVISTSP  221 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48899999999999999999999999888643

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.03  E-value=0.0066  Score=39.03  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=27.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .++|+|+|..|.++|..|++.| +|+++.|+
T Consensus       130 ~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          130 NIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            4789999999999999999999 99999875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.03  E-value=0.0082  Score=37.80  Aligned_cols=32  Identities=16%  Similarity=0.172  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|..|...|..|.+.|++|.++++++
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            58999999999999999999999999998864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.03  E-value=0.011  Score=38.84  Aligned_cols=32  Identities=22%  Similarity=0.462  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .|.|||+|..|.+.|+.+...|.  +++++|.+.
T Consensus        21 kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           21 KITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            58999999999999999999987  899998653

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.01  E-value=0.0077  Score=39.43  Aligned_cols=31  Identities=29%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             cEEEEccC-HHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGG-ISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .++|||+| +.|..+|..|...|.+|++.+++
T Consensus       179 ~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          179 KCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             EEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             EEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            58999999 67999999999999999988664

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.01  E-value=0.011  Score=39.17  Aligned_cols=32  Identities=16%  Similarity=0.349  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|..|+.++..+...|.+|+++++++
T Consensus       182 ~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~  213 (360)
T 1piw_A          182 KVGIVGLGGIGSMGTLISKAMGAETYVISRSS  213 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            48999999999999998888899999998754

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=95.99  E-value=0.007  Score=44.03  Aligned_cols=32  Identities=34%  Similarity=0.524  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|+.++..|++|+++|.++
T Consensus       318 ~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          318 SVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            47899999999999999999999999999754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.95  E-value=0.013  Score=39.06  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|..|+.++..+...|.+|+++++++
T Consensus       197 ~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~  228 (369)
T 1uuf_A          197 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE  228 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48999999999999998888999998888654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=95.93  E-value=0.01  Score=39.31  Aligned_cols=31  Identities=29%  Similarity=0.310  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|..+|..|+..|. +++|+|.+
T Consensus        38 ~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d   69 (346)
T 1y8q_A           38 RVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE   69 (346)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            58999999999999999999998 78899764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.92  E-value=0.011  Score=38.85  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||.|..|...|..+...|.+|.+++++..
T Consensus       148 ~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~  180 (333)
T 2d0i_A          148 KVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK  180 (333)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            478999999999999999999999999998653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.91  E-value=0.01  Score=39.39  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|+|+|..|++++..+...|.+|++++++
T Consensus       192 ~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~  222 (363)
T 3uog_A          192 RVVVQGTGGVALFGLQIAKATGAEVIVTSSS  222 (363)
T ss_dssp             EEEEESSBHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            4899999999999999999899999999864

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.89  E-value=0.011  Score=36.04  Aligned_cols=34  Identities=15%  Similarity=0.229  Sum_probs=30.1

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +.|+|.| +|..|...+..|.+.|++|+++.|++.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE   35 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGG
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            3689999 799999999999999999999988653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.88  E-value=0.012  Score=38.04  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      ++|.|||+|-.|.++|+.|...+.  +++++|.+.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            478999999999999999988765  799998754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=95.88  E-value=0.012  Score=41.14  Aligned_cols=33  Identities=27%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|||+|.+|+-.|..+++.+.+|+++++.+.
T Consensus       188 ~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             EEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            589999999999999999999999999998653

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=95.87  E-value=0.0074  Score=39.05  Aligned_cols=33  Identities=30%  Similarity=0.509  Sum_probs=27.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|.+||-|.-|...|..|.++|++|+++++++.
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            488999999999999999999999999998653

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=95.87  E-value=0.014  Score=39.90  Aligned_cols=29  Identities=38%  Similarity=0.670  Sum_probs=27.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC---cEEEEe
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV---DVVLYE   30 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~---~v~v~E   30 (130)
                      .++|+|+|-+|.+++..|.+.|.   ++.|++
T Consensus       188 rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          188 TLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            58999999999999999999998   899999

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.87  E-value=0.017  Score=37.09  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=29.6

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.|+|.|+ |..|...+..|.+.|++|+++.+.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   34 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLS   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            36899997 9999999999999999999998754

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=95.87  E-value=0.0073  Score=38.71  Aligned_cols=31  Identities=32%  Similarity=0.409  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||.|..|...|..|.+.|++|++++ ++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            58899999999999999999999999998 54

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.86  E-value=0.015  Score=38.63  Aligned_cols=31  Identities=29%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|+|.|..|..+|..|...|.+|++.|.+
T Consensus       177 tV~I~G~GnVG~~~A~~l~~~GakVvvsD~~  207 (355)
T 1c1d_A          177 TVLVQGLGAVGGSLASLAAEAGAQLLVADTD  207 (355)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999999999865

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.86  E-value=0.012  Score=38.76  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|..|++++..+...|. +|+++++++
T Consensus       170 ~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~  202 (348)
T 2d8a_A          170 SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD  202 (348)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            58999999999999999998999 899998653

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.85  E-value=0.014  Score=38.63  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|..|+.++..+...|.+|+++++++
T Consensus       183 ~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~  214 (357)
T 2cf5_A          183 RGGILGLGGVGHMGVKIAKAMGHHVTVISSSN  214 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESST
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCh
Confidence            48899999999999998888899999888753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.82  E-value=0.013  Score=38.27  Aligned_cols=31  Identities=29%  Similarity=0.622  Sum_probs=28.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~   32 (130)
                      +|.|||+|..|.+.|+.|...+.  +++++|.+
T Consensus         7 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            7 KVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            68999999999999999999876  89999874

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=95.81  E-value=0.017  Score=38.87  Aligned_cols=33  Identities=21%  Similarity=0.060  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|+|..+.+.|..++..|++|+|+|..+.
T Consensus       206 rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          206 RMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             EEEEECCSTHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEECCchh
Confidence            578999999999999999999999999997543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.81  E-value=0.014  Score=38.79  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=27.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|..|+.++..+...|. +|+++++++
T Consensus       198 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  230 (376)
T 1e3i_A          198 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING  230 (376)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            48999999999999999888999 788887643

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=95.80  E-value=0.019  Score=37.49  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||.|..|...|..|...|.+|+.+++++.
T Consensus       141 tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          141 SVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            588999999999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	5e-27
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	6e-24
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	6e-23
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-22
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	9e-20
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-18
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-14
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	3e-14
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	6e-14
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-13
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	5e-12
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-11
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	8e-11
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-10
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	4e-10
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	5e-10
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	5e-10
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	7e-10
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	1e-09
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	1e-09
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	2e-09
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	4e-09
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	5e-09
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	7e-09
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	7e-09
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	8e-09
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	1e-08
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	4e-08
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	7e-08
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-07
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	1e-07
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	1e-07
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-07
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	4e-07
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	6e-07
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	7e-07
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	9e-07
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-06
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	3e-06
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-06
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	4e-06
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	5e-06
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	7e-06
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	9e-06
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	9e-06
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	1e-05
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	2e-05
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	2e-05
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-05
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	2e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	3e-05
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	3e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	4e-05
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	4e-05
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	5e-05
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	7e-05
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	1e-04
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	1e-04
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	2e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	2e-04
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-04
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	6e-04
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	6e-04
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	0.001
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.001
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	0.001
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.002
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.003

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 5e-27
 Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 4/132 (3%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
           V +IG G+SGLA+A  L   G+DV L E  D +GG   T        DLG  +       
Sbjct: 8   VIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN 67

Query: 63  NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGT----RNGFSSLFAQKKNLLNPYFWQM 118
                   + +++        +    GQ             F+ L      L +   + +
Sbjct: 68  PMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNV 127

Query: 119 LWEINKFKDDAL 130
           L         AL
Sbjct: 128 LNNKPVSLGQAL 139

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (228), Expect = 6e-24
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATS 61
           V V+GGGISG+A+A +L  +G++VV+ E  D +GG   T+       +DLG +     T 
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ 60

Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWE 121
              +     LG++    +    +            R  F  ++     L +  FW+ + +
Sbjct: 61  NRILRLAKELGLETYKVNEVERLIHHVKGKSYPF-RGPFPPVWNPITYLDHNNFWRTMDD 119

Query: 122 INKFKDDAL 130
           + +      
Sbjct: 120 MGREIPSDA 128

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 89.4 bits (220), Expect = 6e-23
 Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
           M VAV+GGGISGLA A  L   G D VL E    LGG   T  + G  ++ G   F    
Sbjct: 1   MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF-LDR 59

Query: 61  SPNTMEFFD--SLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQM 118
            P T       +L   ++++D +        +G          +  A     L       
Sbjct: 60  EPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVA 119

Query: 119 LWEINKFKDDA 129
               ++   + 
Sbjct: 120 GELFSRRAPEG 130

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 89.1 bits (219), Expect = 1e-22
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
           VAVIG G+SGLA+A+ L   G++V ++E E   GG  ++++ DG+  D G       +  
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTM-TESEG 62

Query: 63  NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEI 122
           +     DSLG+  K             +               +   L      QML E 
Sbjct: 63  DVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEP 122

Query: 123 NKFKDDAL 130
             +K+  L
Sbjct: 123 ILWKNKKL 130

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 80.8 bits (197), Expect = 9e-20
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 3   VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V V+G G+SG+++A  L++AG+ D+++ E  D +GG        G++++LG         
Sbjct: 3   VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 62

Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWE 121
                 +  +   +K  +          Q         +   + QK+  L     +M  +
Sbjct: 63  GKMNPIWPIVNSTLKLRNFRSDFD-YLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 121

Query: 122 INKFKDDA 129
           ++     +
Sbjct: 122 LSATLHAS 129

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 77.9 bits (190), Expect = 1e-18
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 4/122 (3%)

Query: 2   QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID--GVDLDLGFTLFNHA 59
            V ++G G++GL++A+VLA AG  V + E  +  GG  +T   +  G   +LG       
Sbjct: 32  HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPM-RLPE 90

Query: 60  TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQML 119
                 E+     + +         +    +                 K  + P      
Sbjct: 91  KHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGE-VKKDPGLLKYPVKPSEAGKS 149

Query: 120 WE 121
             
Sbjct: 150 AG 151

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (157), Expect = 3e-14
 Identities = 16/78 (20%), Positives = 32/78 (41%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V V+G GI+    + +L+  G  V+  +K+D  GG A ++T+  +         +     
Sbjct: 8  VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 67

Query: 63 NTMEFFDSLGVDMKSSDM 80
          +         VD+    +
Sbjct: 68 SKFGKDRDWNVDLIPKFL 85

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 65.2 bits (158), Expect = 3e-14
 Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI---DGVDLDLGFTLFN 57
            ++ ++G G SG      LA+ G  V + ++ D +GG++        + +    G  +F 
Sbjct: 3   KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIF- 61

Query: 58  HATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRN-----GFSSLFAQKKNLLN 112
           H  +     + +     M   +   +    +                 +    + + L+ 
Sbjct: 62  HTDNETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIA 121

Query: 113 PYFWQMLWEINKFKDDAL 130
                 + +   F+++AL
Sbjct: 122 EKGDSTIADPQTFEEEAL 139

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 64.1 bits (155), Expect = 6e-14
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
            ++G G+ G   A  L K    V++ EK + +GG+A T   +G+ +        H    
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDK 63

Query: 63 NTMEFFDS 70
             ++ + 
Sbjct: 64 YIWDYVND 71

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.3 bits (152), Expect = 2e-13
 Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 4/123 (3%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT----LFNH 58
           V V+G G++    + +++  G  V+  ++    GG + +IT                   
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETM 68

Query: 59  ATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQM 118
               +         +      +   +  +  +  ++    G       K   +     + 
Sbjct: 69  GRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128

Query: 119 LWE 121
           L  
Sbjct: 129 LAS 131

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 59.0 bits (141), Expect = 5e-12
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 19/130 (14%)

Query: 1   MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHA 59
           + + + G GI GL+ A  L +AG+  V L E    +      I I               
Sbjct: 2   IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINI--------------- 46

Query: 60  TSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQML 119
             P  +E    LG+       + ++   + +  +      +S     +     P +    
Sbjct: 47  -QPAAVEALAELGLGPA--LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHR 103

Query: 120 WEINKFKDDA 129
            E+      A
Sbjct: 104 GELQMILLAA 113

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 57.3 bits (137), Expect = 2e-11
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 14/73 (19%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
          QVA+IG G SGL    +L KAG+D V+ E++       +                     
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAG--------------VLE 49

Query: 62 PNTMEFFDSLGVD 74
             ++     GVD
Sbjct: 50 QGMVDLLREAGVD 62

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 55.5 bits (132), Expect = 8e-11
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDS-LGGHAKTITIDG----VDLDLGFTLFN 57
          +AV+GG ISGL +A +L  AGVDV +YE+    L G    I +        L+ G  L +
Sbjct: 7  IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDS 66

Query: 58 HATSPNTMEFFDSLG 72
           +   ++ME+ D+L 
Sbjct: 67 ISVPSSSMEYVDALT 81

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 55.2 bits (132), Expect = 1e-10
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V V+G G SGL + + L + G  V + E    +GG        G   D+    + ++ S 
Sbjct: 10 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSE 69

Query: 63 NTMEFFD 69
            ++ ++
Sbjct: 70 EVLQEWN 76

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 53.3 bits (127), Expect = 4e-10
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
          M+V VIG G+ GL++A  + +    V+            
Sbjct: 1  MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF 39

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 53.6 bits (127), Expect = 5e-10
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 21/124 (16%)

Query: 2   QVAVIGGGISGLASAFVLA-----KAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLF 56
            V ++G G +GL +A VL+     K  + V + +K  +   + +   +            
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGL------------ 56

Query: 57  NHATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFW 116
                  T+E   +LG+  K    +  +S       +       +         ++ Y  
Sbjct: 57  ----QCRTLESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQ 112

Query: 117 QMLW 120
            +L 
Sbjct: 113 VVLH 116

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 53.2 bits (126), Expect = 5e-10
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
            VIGGGI G A A+ LAK   +  L+E    +GG  
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESGT-MGGRT 42

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 52.7 bits (125), Expect = 7e-10
 Identities = 20/116 (17%), Positives = 44/116 (37%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
           V VIGGG SGL +A   A+ G +V+L +K + LG           ++     L       
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64

Query: 63  NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQM 118
                F      + +++   +   + G   +         +  + +++++    ++
Sbjct: 65  PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRL 120

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
          V V+G G  G+A+ + LAK GV  +L +  D    + 
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNG 42

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 52.0 bits (123), Expect = 1e-09
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
          +V V+G G+ GL+SA +LA+ G  V +  ++      
Sbjct: 8  RVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS 44

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 3  VAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
          +A+IG G SGL +A  L        V L+E+  S GG     +     L +  T     T
Sbjct: 7  IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 66

Query: 61 SPNT 64
           P  
Sbjct: 67 EPIV 70

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.3 bits (119), Expect = 4e-09
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 3  VAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGG 37
          + V+G G +G  +A  L K      V +YEK+    G
Sbjct: 4  ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 40

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40
          V V+G G +G ++A     +G  V+L EKE  +GG+AK
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 50.4 bits (119), Expect = 7e-09
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40
          V +IG G +GLA+A     AG  V+L EKE   GG+ K
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.9 bits (118), Expect = 7e-09
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 3   VAVIGGGISGLASAFVLAK-AGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
           V V+G G +GL++A+ ++K   V V + E+  S GG A            G         
Sbjct: 36  VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA---------WLGGQLFSAMIVR 86

Query: 62  PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEW 94
                F D +GV     D    V          
Sbjct: 87  KPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTI 119

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.7 bits (117), Expect = 8e-09
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 3  VAVIGGGISGLASAFVLAKAG-------VDVVLYEKEDSLGGH 38
          +A++G G S   +A  L KA        + V + E   +  G 
Sbjct: 5  IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL 47

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
          V V+G G +G  ++    KAG +V+L +K    GG++
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS 58

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 16/65 (24%), Positives = 24/65 (36%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
          V +IGGG +G  +A   A+ G +    EK   LGG    +        L  +   H    
Sbjct: 8  VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHT 67

Query: 63 NTMEF 67
             + 
Sbjct: 68 EAQKR 72

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 47.2 bits (111), Expect = 7e-08
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
            +IG G +GL  A  LAK G  V +++    +G  
Sbjct: 7  NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK 42

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          V +IGGG  G  +A   A+ G      EK  +LGG
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGG 40

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 46.7 bits (109), Expect = 1e-07
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 3  VAVIGGGISGLASAFVLAKAGV-DVVLYEKED 33
          + +IG GI G   A  L   G  ++ + ++  
Sbjct: 4  IVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 46.7 bits (109), Expect = 1e-07
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
            VIGGG++GL +A    + G+  ++         H
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH 43

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
           V V+GGG  G ++AF  A  G+ V + E+  +LGG    +            L ++A   
Sbjct: 9   VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPS-----KALLHNAAVI 63

Query: 63  NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWE 121
           + +    + G+     ++   +      G       G + +   +K  +     Q L  
Sbjct: 64  DEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDP 122

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.7 bits (104), Expect = 4e-07
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGH 38
          +A++G G + ++ A  LA+ G  D+ ++EK++ +GG 
Sbjct: 7  IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL 43

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.1 bits (103), Expect = 6e-07
 Identities = 9/67 (13%), Positives = 23/67 (34%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
          ++ ++G G +   +A   A+A +  +L+E   +             D++           
Sbjct: 7  RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILG 66

Query: 62 PNTMEFF 68
              + F
Sbjct: 67 VELTDKF 73

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (104), Expect = 7e-07
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 3  VAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGH 38
          V ++G G SGL++A+V+AK    + V + E   + GG 
Sbjct: 53 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 90

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.1 bits (103), Expect = 9e-07
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 3  VAVIGGGISGLASAFVLAK------AGVDVVLYEKEDSLGGH 38
          V ++G G +GL++A  L +        + V L EK   +G H
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH 76

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
            VIG G +G+ +A  ++++G    L  K      H 
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT 46

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 42.3 bits (98), Expect = 3e-06
 Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 2/129 (1%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
           V VIG G  G  +A   A+ G+   L EK     G             +       ++  
Sbjct: 6   VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYK 65

Query: 63  NTMEF--FDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLW 120
                  F   G+      +     + +          G +SL       L     ++L 
Sbjct: 66  FHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLA 125

Query: 121 EINKFKDDA 129
                   A
Sbjct: 126 GKKVEVTAA 134

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (97), Expect = 4e-06
 Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 5/126 (3%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
              IGGG  G+AS    A  G    L E ++  G       +    +     +       
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREA---- 60

Query: 63  NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEI 122
               +    G D   +  ++   +     +       + ++  +    +   F + +   
Sbjct: 61  -IHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAK 119

Query: 123 NKFKDD 128
               + 
Sbjct: 120 TLEVNG 125

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 42.0 bits (97), Expect = 4e-06
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
          + VIGGG  G+A+A   A+    V L EK   LGG
Sbjct: 4  LIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGG 37

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (96), Expect = 5e-06
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID 45
          ++ ++G G +G  +A   A+A +  VL    +  G    T  ++
Sbjct: 7  KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVE 50

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 41.5 bits (96), Expect = 7e-06
 Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 4/96 (4%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI----TIDGVDLDLGFTLFNH 58
              IGGG +G   +  L   G   ++ ++   LGG              D      L   
Sbjct: 45  AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 104

Query: 59  ATSPNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEW 94
            +            V +K     F    +   G   
Sbjct: 105 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMN 140

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.5 bits (96), Expect = 9e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 3  VAVIGGGISGLASAFVLAK----AGVDVVLYEKEDSLGGHA 39
          + +IGGG SG  +A+  A      G+ V L EK       A
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA 64

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 9e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
          V +IG G +GL+ A  LA     V++  K     G 
Sbjct: 10 VLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS 44

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
          + +IGGG  G  +A    + G+  VL E   +LGG    
Sbjct: 8  LLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLN 45

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
          +AV+G G +GLA A   A  G  V L++    +GG 
Sbjct: 46 LAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ 81

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 3  VAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHA 39
          +A++G G +GL +A   A+A     + L  K   +  H 
Sbjct: 8  LAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT 46

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.8 bits (91), Expect = 2e-05
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 1  MQVAVIGGGISGLASAFVLAK--AGVDVVLYEKED 33
          M+V V+G    G  +   L       ++  YEK D
Sbjct: 1  MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 39.7 bits (91), Expect = 2e-05
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34
          V ++G G +G A+A   A+ G+   L  +   
Sbjct: 4  VLIVGSGPAGAAAAIYSARKGIRTGLMGERFG 35

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
            VIGGG  GLASA   A+ G    + E    LGG    +      +     + +     
Sbjct: 6  YLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNVGCVPKKVMWNTAVHSEFMHD 64

Query: 63 NTMEFFDSLGVDMKSSDM 80
          +    F S         +
Sbjct: 65 HADYGFPSCEGKFNWRVI 82

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
          + +IGGG  GLA+A   AK    V++ +           
Sbjct: 6  LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNW 44

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.1 bits (90), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
            V+G G  G  +A   A+ G  V + EK +  G
Sbjct: 6  TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG 39

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 38.7 bits (89), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
          Q AV+G GI G   A+  A  G  +++ +  +
Sbjct: 6  QAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 38.7 bits (89), Expect = 5e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS 34
             AV+G G  G A A  LA  G  V+ ++ +  
Sbjct: 2  KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ 35

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.1 bits (87), Expect = 7e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
          M V+++G G  G A +  L   G +V ++  E
Sbjct: 1  MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
          V VIGGG+ G   A V A  G  VVL ++ +
Sbjct: 7  VTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDG 46
          V ++G G SG  +AF LA+ GV V L  +               
Sbjct: 5  VLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPP 48

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLY 29
          M++ V+G G  G      L K G +V  +
Sbjct: 1  MKITVLGCGALGQLWLTALCKQGHEVQGW 29

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.0 bits (84), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 2  QVAVIGGGISGLASAFVLAKAGVD---VVLYEKEDSLGG 37
          ++ ++GGG +G  +A V A +  +   V + + +  +GG
Sbjct: 3  RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGG 40

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 7/125 (5%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
             VIG G     SA  L +AGV  ++ E     G        DG   ++   + N     
Sbjct: 5   AVVIGTGYGAAVSALRLGEAGVQTLMLEM----GQLWNQPGPDG---NIFCGMLNPDKRS 57

Query: 63  NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQMLWEI 122
           +  +      +         + ++D   G          S++  +           +   
Sbjct: 58  SWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVE 117

Query: 123 NKFKD 127
            K   
Sbjct: 118 PKRSY 122

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 35.6 bits (81), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
           +  V G G  G A A VL+K   +V ++   +
Sbjct: 8  NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.7 bits (81), Expect = 6e-04
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 1  MQVAVIGGGISGLASAFVLAKAGVDVVLYEK 31
          M++++ G G  G   A  L+  G +V+  + 
Sbjct: 1  MRISIFGLGYVGAVCAGCLSARGHEVIGVDV 31

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 4/122 (3%)

Query: 3   VAVIGGGISGLASAFVLAKAGVDVVLYE--KEDSLGGHAKTITIDGVDLDLGFTLFNHAT 60
             VIG G  G  +A  L +AG+   + E  +     G    I    ++ D         T
Sbjct: 10  ALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKT 69

Query: 61  SPNTMEF--FDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKKNLLNPYFWQM 118
                 F  F       +   +  S      + ++     G S +           +++ 
Sbjct: 70  DQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEE 129

Query: 119 LW 120
           + 
Sbjct: 130 IL 131

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
          V V+G G++ ++    L +AG   ++    D     
Sbjct: 6  VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP 41

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 1  MQVAVIGG--GISGLASAFVLAKAGVDVVLY 29
          M+VA++GG   + G   A  LA  G ++V+ 
Sbjct: 1  MRVALLGGTGNL-GKGLALRLATLGHEIVVG 30

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 3  VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
          V ++G G++G+  AF L  +G +  +    D
Sbjct: 6  VVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 3  VAVIGGGISGLASAFVLAKAG--VDVVLYEKED 33
          V V+GGG  G  +A  +  A   ++V L E   
Sbjct: 5  VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.83
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.76
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.75
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.75
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.71
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.69
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.68
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.67
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.66
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.57
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.47
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.47
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.46
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.45
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.45
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.43
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.43
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.43
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.41
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.4
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.39
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.39
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.38
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.38
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.37
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.37
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.37
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.36
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.35
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.34
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.32
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.32
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.32
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.29
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.28
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.28
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.28
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.27
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.27
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.25
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.25
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.25
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.25
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	99.24
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.23
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.22
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.21
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.18
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.15
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.15
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.14
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.13
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.13
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.11
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.11
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.04
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.01
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.99
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.99
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.93
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.76
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.75
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.75
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.72
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.64
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.63
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.57
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.56
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.55
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.52
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.52
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.47
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.45
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.43
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.42
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.39
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.38
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.31
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.31
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.3
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.27
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.26
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.25
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.22
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.2
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.17
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.15
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.13
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.09
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.08
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.06
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.03
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.02
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.93
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.92
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.89
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.89
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.88
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.8
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.77
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.68
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.55
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.52
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.51
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.5
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.49
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.47
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.44
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.44
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.43
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.4
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.36
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.35
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.25
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.2
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.2
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.19
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.18
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.15
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.13
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.13
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.12
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.09
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.08
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.07
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.05
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.04
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.03
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.02
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.01
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.01
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.01
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.95
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.94
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.93
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.93
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.92
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.91
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.9
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.85
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.85
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.83
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.82
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.82
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.81
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.81
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.81
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.72
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.7
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.69
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.67
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.62
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.56
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.54
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.53
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.49
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.45
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.43
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	96.32
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.25
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.24
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.24
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.24
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.24
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.17
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.16
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.15
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.1
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.08
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.05
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.0
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.96
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.95
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.93
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.81
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.77
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.76
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.7
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.63
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.57
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.43
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.28
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.26
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.2
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.13
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.06
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.98
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.92
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.87
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.85
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.84
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.84
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.77
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.67
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.61
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.6
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.53
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.53
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.48
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.45
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	94.45
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.38
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.3
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.28
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.28
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.25
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	94.21
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.21
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.18
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.11
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.1
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.07
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.06
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.99
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	93.98
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.96
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.96
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	93.93
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.92
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.9
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.88
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.87
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.86
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.85
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.84
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.83
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.83
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.74
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.72
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.72
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.63
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.62
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.58
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.58
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.54
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.52
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.51
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.49
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.47
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.41
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.36
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.35
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.31
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.24
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.23
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.22
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.22
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.21
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.19
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.18
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.15
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.14
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.07
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.04
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.97
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.88
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.8
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.79
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.76
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.72
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.71
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.69
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.64
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.58
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.37
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.35
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.35
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	92.35
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.31
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.27
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.22
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.19
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	92.18
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.14
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.08
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.87
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.8
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	91.75
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.7
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	91.7
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	91.53
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	91.33
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.24
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.18
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.07
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	91.06
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.03
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	91.02
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.0
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.7
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	90.53
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	90.51
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	90.49
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.39
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.29
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	90.11
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	90.07
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	89.9
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	89.88
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	89.73
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.48
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.44
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	88.81
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	88.64
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	88.64
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	88.6
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	88.59
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	88.44
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	88.26
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	88.01
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.87
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	87.83
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	87.61
d2r8oa3	136	Transketolase (TK), C-domain {Escherichia coli [Ta	87.48
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	87.07
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.34
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	86.2
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	85.67
d1umdb2	137	Branched-chain alpha-keto acid dehydrogenase {Ther	85.64
d1w85b2	132	Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d	85.48
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.4
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	85.37
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	85.03
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	84.78
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	84.5
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	84.32
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	84.15
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	84.04
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	83.94
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	83.84
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.71
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.4
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	83.36
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	83.27
d1itza3	136	Transketolase (TK), C-domain {Maize (Zea mays) [Ta	83.13
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	83.01
d2ozlb2	138	E1-beta subunit of pyruvate dehydrogenase, C-domai	82.52
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	82.4
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	82.21
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	81.75
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	81.67
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	81.5
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	81.32
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	81.2
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	80.87
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	80.71
d2gy9i1	126	Ribosomal protein S9 {Escherichia coli [TaxId: 562	80.51
d1jzta_	243	Hypothetical protein YNL200c (YNU0_YEAST) {Baker's	80.48

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.2e-21  Score=122.45  Aligned_cols=82  Identities=27%  Similarity=0.386  Sum_probs=72.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceeccce
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSDMS   81 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   81 (130)
                      +|+|||||++||+||+.|+++|++|+|+|+++.+||+++++..+|+.+|.|++++.......+.++++++|++....+..
T Consensus         7 kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~~~~~   86 (449)
T d2dw4a2           7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQK   86 (449)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEECCCC
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCcceecCCC
Confidence            69999999999999999999999999999999999999999999999999999987655666778999999876654433


Q ss_pred             ee
Q 037740           82 FS   83 (130)
Q Consensus        82 ~~   83 (130)
                      ..
T Consensus        87 ~~   88 (449)
T d2dw4a2          87 CP   88 (449)
T ss_dssp             CC
T ss_pred             ce
Confidence            33

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.4e-18  Score=111.47  Aligned_cols=76  Identities=33%  Similarity=0.533  Sum_probs=66.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc-cCcccccccccccCCCChhHHHHHHHcCCCceec
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI-DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSS   78 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~   78 (130)
                      ||+|||||++||+||+.|+++|++|+|||+++.+||++.+... ++..++.|++++.. ...++.++++++|++....
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~~   77 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQNRILRLAKELGLETYKV   77 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECT-TCHHHHHHHHHTTCCEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCC-CChHHHHHHHHcCCcceec
Confidence            8999999999999999999999999999999999999988775 56788999988865 3567888999999865543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.75  E-value=1.5e-18  Score=110.30  Aligned_cols=76  Identities=38%  Similarity=0.546  Sum_probs=67.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +||+|||||++||+||+.|+++|++|+|+|+++.+||++.++..+++.++.|++++.. .+....++++..++....
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~-~~~~~~~l~~~~~~~~~~   76 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD-REPATRALAAALNLEGRI   76 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEET-TCHHHHHHHHHTTCGGGE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCCEEEecCceEEec-CCHHHHHHHHHhcccccc
Confidence            5899999999999999999999999999999999999999999999999999988764 356677888888876543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.75  E-value=2.7e-18  Score=109.26  Aligned_cols=75  Identities=36%  Similarity=0.608  Sum_probs=67.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      .+|+|||||++||+||+.|+++|++|+|||+++.+||++.++..+++.++.|++++.. .+....++++++++...
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~-~~~~~~~~~~~~~~~~~   76 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE-SEGDVTFLIDSLGLREK   76 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC-CSHHHHHHHHHTTCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCCEEEecCceEEeC-CCHHHHHHHHHhCCccc
Confidence            4799999999999999999999999999999999999999999999999999998875 36777888898886544

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.71  E-value=6.6e-18  Score=105.62  Aligned_cols=58  Identities=31%  Similarity=0.654  Sum_probs=53.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCeeeecccCcccccccccccC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNH   58 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~   58 (130)
                      .||+|||||++||+||+.|+++|+ +|+|||+++.+||++++...+++.++.|++++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~   59 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEG   59 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEecCCeEEec
Confidence            589999999999999999999997 6999999999999999999999999999877643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.68  E-value=6.4e-17  Score=104.02  Aligned_cols=76  Identities=26%  Similarity=0.469  Sum_probs=64.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc--cCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI--DGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      .+|+|||||++||+||+.|+++|++|+|||+++.+||++.++..  .+..++.|++++.. ....+.++++++++....
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~-~~~~~~~l~~~~~~~~~~  108 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE-KHRIVREYIRKFDLRLNE  108 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET-TCHHHHHHHHHTTCCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecC-ccHHHHHHHHHhCCccce
Confidence            37999999999999999999999999999999999999988766  35788888887754 356677888998876543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.6e-17  Score=102.96  Aligned_cols=45  Identities=31%  Similarity=0.510  Sum_probs=42.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeeccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITID   45 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~   45 (130)
                      |||+|||+|++||+||+.|+++|++|+|+|+++.+||++++....
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~   50 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLS   50 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeecc
Confidence            799999999999999999999999999999999999999887653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.9e-17  Score=104.31  Aligned_cols=71  Identities=24%  Similarity=0.462  Sum_probs=60.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCccc-ccccccccCCCChhHHHHHHHcC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDL-DLGFTLFNHATSPNTMEFFDSLG   72 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g   72 (130)
                      |||+|||||++||++|..|++.|.+|+|+|+++.+||++.+....|..+ +.|++.++. ......+++..+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g~~~~~~G~h~f~t-~~~~v~~~~~~~~   73 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT-NDKYIWDYVNDLV   73 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE-SCHHHHHHHHTTS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCCEEEeecCcEEEEe-cchHHHHHhhccc
Confidence            6999999999999999999999999999999999999999988877665 678887753 3456667776654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.57  E-value=2.4e-15  Score=96.61  Aligned_cols=71  Identities=18%  Similarity=0.350  Sum_probs=58.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc---cCcccccccccccCCCChhHHHHHHHcC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI---DGVDLDLGFTLFNHATSPNTMEFFDSLG   72 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~g   72 (130)
                      .+|+|||||++||++|..|++.|++|+|+|+++.+||++.+...   ++..++.|.+.++. ......++++.+.
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t-~~~~v~~~~~~~~   76 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT-DNETVWNYVNKHA   76 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE-SCHHHHHHHHTTS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecC-ccHHHHHHHHHhh
Confidence            36899999999999999999999999999999999999988753   44567888887763 2456667777664

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.47  E-value=1.3e-14  Score=89.12  Aligned_cols=38  Identities=39%  Similarity=0.727  Sum_probs=36.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      |||+|||+||+||+||.++++.|.+|+|||+.+.+||.
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~   44 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV   44 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCe
Confidence            79999999999999999999999999999998888884

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.47  E-value=3.5e-14  Score=90.47  Aligned_cols=48  Identities=29%  Similarity=0.422  Sum_probs=42.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD   48 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~   48 (130)
                      +||+|||||++||++|..|.+.|++|+|||+++.+||.|....++|..
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~   55 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR   55 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCB
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCce
Confidence            489999999999999999999999999999999999988665555543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.3e-14  Score=89.34  Aligned_cols=52  Identities=25%  Similarity=0.370  Sum_probs=42.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGF   53 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~   53 (130)
                      |||+|||+||+|++||.++++.|++|+|+|+.+. +|.......+|.|++.+|
T Consensus         4 YDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~-~~~~~~~~~GG~c~~~g~   55 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP-TPLGTNWGLGGTCVNVGC   55 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC-CTTCCCCCTTHHHHHHSH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC-CCcccccccccccccccc
Confidence            7999999999999999999999999999998654 544444555566666665

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=2.2e-14  Score=88.08  Aligned_cols=40  Identities=35%  Similarity=0.572  Sum_probs=37.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+||+|++||..+++.|.+|+|+|+.+.+||.+.
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            7999999999999999999999999999999888898543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.45  E-value=5.2e-14  Score=85.82  Aligned_cols=40  Identities=35%  Similarity=0.556  Sum_probs=37.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||+|++|+++|..+++.|.+|+|+|+.+.+||.+.
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            8999999999999999999999999999999999999654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.43  E-value=1.9e-14  Score=89.98  Aligned_cols=36  Identities=44%  Similarity=0.671  Sum_probs=34.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      ||++|||+|++|++||..+++.|.+|+|+|+ ..+||
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GG   37 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGG   37 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCC
Confidence            8999999999999999999999999999999 45787

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=9.2e-14  Score=82.26  Aligned_cols=40  Identities=35%  Similarity=0.591  Sum_probs=37.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+||||||+||+||..|+++|++|+|||+.+.+||...
T Consensus        44 k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          44 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             cEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            4799999999999999999999999999999999999543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=1.4e-13  Score=86.85  Aligned_cols=41  Identities=37%  Similarity=0.579  Sum_probs=36.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHH-CCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAK-AGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~E~~~~~gg~~~~   41 (130)
                      +||+|||+|++||+||+.|++ .|++|+|+|+.+.+||.++.
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            589999999999999999987 59999999999889986643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.41  E-value=9.8e-14  Score=86.02  Aligned_cols=37  Identities=46%  Similarity=0.709  Sum_probs=35.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||+|++|++||+.|++.|++|+|+|+++.+|+
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~   39 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGR   39 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence            7999999999999999999999999999999888775

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=6.5e-14  Score=85.27  Aligned_cols=38  Identities=37%  Similarity=0.510  Sum_probs=35.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++|+++|..+++.|.+|+|+|++ .+||.|
T Consensus         3 yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc   40 (217)
T d1gesa1           3 YDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTC   40 (217)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeE
Confidence            79999999999999999999999999999994 688854

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.39  E-value=1.7e-13  Score=86.23  Aligned_cols=37  Identities=35%  Similarity=0.563  Sum_probs=33.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||||++|+++|++|+++|++|+|+|+.+..++
T Consensus         4 yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~   40 (281)
T d2gf3a1           4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHT   40 (281)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence            7999999999999999999999999999999765543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.39  E-value=2.4e-13  Score=83.01  Aligned_cols=37  Identities=35%  Similarity=0.497  Sum_probs=34.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||+||+||+||+++++.|.+|+|+|+....++
T Consensus         4 YDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~   40 (229)
T d3lada1           4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEG   40 (229)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCc
Confidence            8999999999999999999999999999998765544

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.38  E-value=8.6e-13  Score=82.64  Aligned_cols=60  Identities=30%  Similarity=0.547  Sum_probs=45.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCce
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMK   76 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   76 (130)
                      +||+|||||++||++|+.|++.|. +|+|+|+++.+.........                ..+.+++++.+++...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l----------------~~~~~~~l~~~~~~~~   62 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINI----------------QPAAVEALAELGLGPA   62 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEE----------------CHHHHHHHHHTTCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEE----------------CHHHHHHHHHcCchhh
Confidence            689999999999999999999996 89999998776543332222                3456667777776443

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-13  Score=83.61  Aligned_cols=36  Identities=44%  Similarity=0.616  Sum_probs=33.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      ||++|||+|++|+++|..+++.|.+|+|+|+ ...||
T Consensus         4 yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG   39 (221)
T d3grsa1           4 YDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGG   39 (221)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCC
Confidence            8999999999999999999999999999999 55676

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=3.3e-13  Score=84.00  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=34.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +||+|||+|++||+||+.|+++|.+|+|+|+++.+|
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            699999999999999999999999999999998876

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.37  E-value=3.3e-13  Score=86.03  Aligned_cols=39  Identities=38%  Similarity=0.703  Sum_probs=36.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||+|++||++|+.|++.|.+|+|+||.+..||..
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s   55 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA   55 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            799999999999999999999999999999988877743

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.37  E-value=2.9e-13  Score=84.92  Aligned_cols=39  Identities=41%  Similarity=0.705  Sum_probs=34.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~   40 (130)
                      |||+|||||++|+++|++|+++|.+|+|+|++. +++.++
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~-~~~gaS   43 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT-MGGRTT   43 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-TTTTHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-CCCCcc
Confidence            699999999999999999999999999999965 444343

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=4.6e-13  Score=87.87  Aligned_cols=37  Identities=32%  Similarity=0.558  Sum_probs=34.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHH------CCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK------AGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~------~g~~v~v~E~~~~~gg   37 (130)
                      |||+||||||||++||+.|++      .|++|+||||...+|.
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~   75 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA   75 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCC
Confidence            799999999999999999998      7999999999888765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.35  E-value=6.2e-13  Score=85.82  Aligned_cols=59  Identities=25%  Similarity=0.329  Sum_probs=44.0

Q ss_pred             CcEEEEccCHHHHHHHHHHH-----HCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCc
Q 037740            1 MQVAVIGGGISGLASAFVLA-----KAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDM   75 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~-----~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~   75 (130)
                      |||+|||||++||++|..|+     +.|++|+||||.+.+....+..            .    ..++.+++++.+|+..
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~------------~----l~~~~~~~L~~lGl~~   71 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQAD------------G----LQCRTLESLKNLGLAD   71 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCC------------E----ECHHHHHHHHTTTCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEE------------E----ECHHHHHHHHHcCChH
Confidence            79999999999999999997     4699999999977554311111            1    1356777888888743

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.34  E-value=4.3e-13  Score=81.68  Aligned_cols=38  Identities=34%  Similarity=0.552  Sum_probs=34.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      ||++|||+|++|++||..+++.|.+|+|+|+ ..+||.+
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk-~~~GG~~   41 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVC   41 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEec-CCCCcce
Confidence            7999999999999999999999999999999 4567743

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.32  E-value=3.1e-12  Score=79.50  Aligned_cols=61  Identities=36%  Similarity=0.626  Sum_probs=45.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      +|+|||||++||++|..|+++|++|+||||++.++...          ..+..     ...+..+.++.+|+..+.
T Consensus         6 kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~----------~~g~~-----~~~~~~~~l~~~g~~~~~   66 (265)
T d2voua1           6 RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF----------GTGIV-----VQPELVHYLLEQGVELDS   66 (265)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCC----------SCEEE-----CCHHHHHHHHHTTCCGGG
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC----------ceEEE-----ECccHHHHHHHcCcchhh
Confidence            69999999999999999999999999999976553211          11111     145677788888876554

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=3.8e-13  Score=82.67  Aligned_cols=40  Identities=28%  Similarity=0.321  Sum_probs=36.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-------CcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-------VDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-------~~v~v~E~~~~~gg~~~   40 (130)
                      ++|+|||+||+||+||++|+++|       ++|+|||+.+.+||.++
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            47999999999999999999987       57999999999999654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.32  E-value=4.8e-13  Score=81.57  Aligned_cols=37  Identities=35%  Similarity=0.640  Sum_probs=34.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      ||++|||+|++|+++|..+++.|.+|+|+|++ .+||.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~   42 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGT   42 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCc
Confidence            79999999999999999999999999999985 57773

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.29  E-value=1e-12  Score=80.66  Aligned_cols=52  Identities=23%  Similarity=0.367  Sum_probs=39.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCeeeecccCccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGF   53 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~~~~~~~~~~~~g~   53 (130)
                      ||++|||+||+|++||.++++.|. +|+|+|+. ..++......++|.|++.||
T Consensus         4 YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~-~~~~~~~~~~lGG~c~n~g~   56 (238)
T d1aoga1           4 FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ-MVHGPPFFSALGGTCVNVGC   56 (238)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTSCCCEEEEESC-SSSBTTTBCCTTHHHHHHSH
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEee-cccCcccccccccccccccc
Confidence            899999999999999999999876 68888874 34443444444556776666

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.28  E-value=1.3e-12  Score=84.08  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=34.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||+|++||+||+.++++|.+|+|+||.+..+|
T Consensus         6 ~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g   42 (336)
T d2bs2a2           6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS   42 (336)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            6999999999999999999999999999999765544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.28  E-value=2.7e-12  Score=79.51  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=32.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      .+|+|||||++||++|+.|+++|++|+|+||+...++
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            3799999999999999999999999999999764333

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.28  E-value=2e-12  Score=82.87  Aligned_cols=39  Identities=44%  Similarity=0.651  Sum_probs=36.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      .||+|||+|++||++|+.|++.|++|+|+||.+..||..
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s   62 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT   62 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTG
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            599999999999999999999999999999988877743

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.27  E-value=3.1e-12  Score=82.45  Aligned_cols=43  Identities=35%  Similarity=0.498  Sum_probs=38.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCeeeecc
Q 037740            2 QVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      +|+|||||++||++|..|.+.+  .+|+||||++.+||.|.....
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~   50 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTST   50 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSC
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCC
Confidence            6999999999999999998875  599999999999998865444

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.6e-12  Score=77.05  Aligned_cols=37  Identities=30%  Similarity=0.553  Sum_probs=33.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      |||+|||||++|++||+.+++.|.+|+|+|++  .||..
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~   38 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQI   38 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcc
Confidence            79999999999999999999999999999974  46643

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.25  E-value=3.1e-12  Score=79.90  Aligned_cols=39  Identities=26%  Similarity=0.401  Sum_probs=36.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      ||++|||+|++|+.+|..+++.|.+|+++|+.+.+||.+
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence            799999999999999999999999999999999999843

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=5.5e-12  Score=75.29  Aligned_cols=38  Identities=29%  Similarity=0.670  Sum_probs=35.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCCCCCCCe
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGHA   39 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~~~gg~~   39 (130)
                      +|+|||||++||+||..|++.|++ |+|||+.+.+||..
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~   44 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS   44 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchh
Confidence            699999999999999999999995 99999999988844

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.25  E-value=4.3e-12  Score=78.02  Aligned_cols=41  Identities=34%  Similarity=0.561  Sum_probs=37.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT   41 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~   41 (130)
                      .+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+..
T Consensus        50 k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          50 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             ceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            37999999999999999999999999999999999997654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.25  E-value=2.8e-12  Score=82.16  Aligned_cols=38  Identities=37%  Similarity=0.644  Sum_probs=35.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++||+||+.+++.|.+|+|+||.+..||.
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~   57 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN   57 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            48999999999999999999999999999998877764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=8.7e-12  Score=79.63  Aligned_cols=40  Identities=35%  Similarity=0.595  Sum_probs=36.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~   40 (130)
                      +||+|||+|++||+||+.|+++  |++|+|+|+++.+||..+
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW   92 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence            4899999999999999999964  999999999999998654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.23  E-value=4.9e-12  Score=77.44  Aligned_cols=40  Identities=33%  Similarity=0.397  Sum_probs=35.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCee
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAK   40 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~~~   40 (130)
                      .+|+|||+|++||+||..|.++  |++|+|||+.+.+||..+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceeh
Confidence            4799999999999999999876  789999999999998543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.22  E-value=2.2e-12  Score=79.53  Aligned_cols=52  Identities=21%  Similarity=0.387  Sum_probs=38.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCeeeecccCccccccc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLGF   53 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~~gg~~~~~~~~~~~~~~g~   53 (130)
                      |||+|||+||+|++||+++++.|. +|+|+|+.... +......++|.|++.+|
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~-~~~~~~~iGGtc~~~gc   56 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH-GPPHYAALGGTCVNVGC   56 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS-BTTTBSCTTCHHHHHSH
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC-Ccccccccccccccccc
Confidence            799999999999999999999885 68899985542 22222233456666666

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.21  E-value=8.9e-12  Score=78.62  Aligned_cols=63  Identities=30%  Similarity=0.376  Sum_probs=44.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCcee
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKS   77 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~   77 (130)
                      .||+|||||++||++|..|++.|++|+|+||.+..+.          .-+.+...    .....+++++.+|+....
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~----------~~~~~~~~----l~~~~~~~l~~lg~~~~l   65 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYV----------LGRIRAGV----LEQGMVDLLREAGVDRRM   65 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHH----------HTCCCCCE----ECHHHHHHHHHTTCCHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC----------CCCceEEE----ECHHHHHHHHHcCchHHH
Confidence            4899999999999999999999999999999763210          00001111    135667788888875543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=9.2e-12  Score=79.24  Aligned_cols=37  Identities=32%  Similarity=0.495  Sum_probs=32.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~   38 (130)
                      |||+|||+|++||+||+.+++.| +|+|+||.+..||.
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~   44 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS   44 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC--
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCc
Confidence            79999999999999999998888 99999998877664

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=2.9e-11  Score=73.79  Aligned_cols=33  Identities=42%  Similarity=0.611  Sum_probs=31.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |||+|||||+||+.||+.+++.|.++++++++-
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            899999999999999999999999999999863

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.4e-11  Score=73.45  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      .||+|||||++||+||+.+++.|.+|+|+|+....|
T Consensus         6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g   41 (190)
T d1trba1           6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG   41 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTG
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccc
Confidence            389999999999999999999999999999865533

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1e-11  Score=79.90  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      |||+|||+|++||+||+.++++|.+|+|+||.+..+|
T Consensus         8 ~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg   44 (330)
T d1neka2           8 FDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS   44 (330)
T ss_dssp             ESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            6999999999999999999999999999999776655

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.13  E-value=3.3e-11  Score=77.88  Aligned_cols=38  Identities=34%  Similarity=0.528  Sum_probs=33.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHH----CCCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAK----AGVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~----~g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|++||+||+.|++    .|.+|+|+||.+..||.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            599999999999999999986    59999999997766553

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.13  E-value=2.6e-11  Score=78.64  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=31.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      |||+|||+|++|+++|.+|+++|++|+|+|+...
T Consensus         5 yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           5 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence            7999999999999999999999999999998443

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.11  E-value=4.4e-11  Score=71.36  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +||+|||||++|++||+.|++.|.+|+|+|+...
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            5899999999999999999999999999997654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.11  E-value=4.8e-11  Score=75.67  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=30.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .||+|||||++|+++|++|+++|. +|+|+||++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            489999999999999999999996 699999975

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=5.5e-11  Score=72.96  Aligned_cols=35  Identities=31%  Similarity=0.684  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCC---CcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAG---VDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g---~~v~v~E~~~~~gg   37 (130)
                      +|+|||+||+|++||.++++.+   .+|+++|+ ..+||
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG   40 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGG   40 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCc
Confidence            6899999999999999998865   57999999 56787

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.4e-10  Score=73.94  Aligned_cols=38  Identities=29%  Similarity=0.487  Sum_probs=33.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGH   38 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~gg~   38 (130)
                      +||+|||+|+|||+||+.+++.  |.+|+|+||.+..+|.
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~   45 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence            5999999999999999999986  7799999997766554

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.99  E-value=1.7e-10  Score=74.89  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=30.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +||+|||+|++|+.+|.+|+++|++|+|+|+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            58999999999999999999999999999983

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.99  E-value=1.5e-10  Score=75.18  Aligned_cols=32  Identities=31%  Similarity=0.512  Sum_probs=30.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +||+|||+|++|+.+|.+|+++|++|+|+|+.
T Consensus         8 ~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           8 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            69999999999999999999999999999973

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.93  E-value=3.8e-10  Score=73.28  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=30.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      ||++|||+|.+|+.+|.+|++.|.+|+|+|+.
T Consensus         3 YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           3 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            79999999999999999999999999999985

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.79  E-value=2e-09  Score=70.59  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=30.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      ||++|||+|.+|+.+|.+|++.+ .+|+|+|+.+
T Consensus        25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            79999999999999999999987 7999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.1e-08  Score=54.93  Aligned_cols=61  Identities=25%  Similarity=0.321  Sum_probs=44.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceecc
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSD   79 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~   79 (130)
                      +++|||+|++|+-+|..|++.|.+|+++|+.+.+...        ...+         ......+.+++.|+......
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~--------~d~~---------~~~~~~~~l~~~GV~~~~~~   83 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS--------FDPM---------ISETLVEVMNAEGPQLHTNA   83 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT--------SCHH---------HHHHHHHHHHHHSCEEECSC
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh--------cchh---------hHHHHHHHHHHCCCEEEeCC
Confidence            5899999999999999999999999999998765431        1000         12334567777887766543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.75  E-value=2.5e-09  Score=69.91  Aligned_cols=33  Identities=27%  Similarity=0.556  Sum_probs=30.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      ||++|||+|.+|+..|.+|++.+ ++|+|+|+.+
T Consensus        18 yD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          18 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            79999999999999999999875 8999999853

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.75  E-value=5.3e-10  Score=68.40  Aligned_cols=31  Identities=32%  Similarity=0.480  Sum_probs=27.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ++|+|||+|++||++|+.|+++|++|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            4799999999999999999999987766665

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.72  E-value=2.4e-09  Score=69.30  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=29.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ||++|||+|.+|+.+|.+|++. ++|+|+|+.+
T Consensus        27 YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          27 YDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             ccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            7999999999999999999986 9999999854

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.64  E-value=2.9e-08  Score=54.37  Aligned_cols=36  Identities=28%  Similarity=0.448  Sum_probs=33.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||||+.|+-+|..+++.|.+|+++|+.+.+..
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~   59 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS   59 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEecceecc
Confidence            589999999999999999999999999999877643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.63  E-value=4.3e-08  Score=54.01  Aligned_cols=35  Identities=37%  Similarity=0.566  Sum_probs=32.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||||+.|+-+|..|++.|.+|+++|+.+.+.
T Consensus        32 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          32 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             eEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            58999999999999999999999999999987654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.57  E-value=6e-08  Score=53.48  Aligned_cols=35  Identities=37%  Similarity=0.474  Sum_probs=32.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||||++|+-+|..|++.|.+|+++|+.+.+.
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~   68 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL   68 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEecccccc
Confidence            58999999999999999999999999999977653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.56  E-value=8e-08  Score=53.06  Aligned_cols=35  Identities=37%  Similarity=0.451  Sum_probs=32.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|+.|+-+|..|++.|.+|+++|+.+.+-
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l   66 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL   66 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCccc
Confidence            58999999999999999999999999999977653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.55  E-value=5.7e-08  Score=53.03  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=32.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||||+.|+-+|..|++.|.+|+++|+.+.+.
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            58999999999999999999999999999987654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.52  E-value=1.1e-07  Score=53.25  Aligned_cols=36  Identities=33%  Similarity=0.465  Sum_probs=33.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||||++|+-+|..|++.|.+|+++|+.+.+..
T Consensus        37 ~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~   72 (133)
T d1q1ra2          37 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE   72 (133)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             EEEEECCchHHHHHHHHHHhhCcceeeeeecccccc
Confidence            589999999999999999999999999999877644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.52  E-value=7.9e-08  Score=52.61  Aligned_cols=34  Identities=15%  Similarity=0.519  Sum_probs=31.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +++|||||..|+-+|..|++.|.+|+++|+.+.+
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            5899999999999999999999999999997765

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.47  E-value=9.8e-08  Score=55.52  Aligned_cols=36  Identities=31%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC--CcEEEEecCCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG--VDVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g--~~v~v~E~~~~~g   36 (130)
                      .+|+|||||++|+.+|..|.+.+  .+|+++|+++...
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~   40 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYY   40 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEE
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccc
Confidence            36999999999999999999986  4799999977543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=1.9e-07  Score=51.46  Aligned_cols=36  Identities=33%  Similarity=0.625  Sum_probs=32.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      .++|||+|+.|+=.|..|++.|.+|+++|+.+.+..
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~   60 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA   60 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccccch
Confidence            589999999999999999999999999999876643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.43  E-value=2.5e-07  Score=50.70  Aligned_cols=35  Identities=34%  Similarity=0.546  Sum_probs=32.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+=.|..+++.|.+|+++|+.+.+.
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             eEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            58999999999999999999999999999977653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.3e-07  Score=51.30  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=32.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+=+|..|++.|.+|+++|+.+.+.
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            58999999999999999999999999999987653

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=2.4e-07  Score=61.94  Aligned_cols=44  Identities=23%  Similarity=0.381  Sum_probs=42.1

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecc
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI   44 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~   44 (130)
                      |||+|+|.|+.=...|..|++.|.+|+-+|+++..||.+.+.++
T Consensus         7 ~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~   50 (491)
T d1vg0a1           7 FDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSF   50 (491)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH
T ss_pred             cCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeH
Confidence            79999999999999999999999999999999999999988876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=4.8e-07  Score=49.77  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +++|||||+.|+=.|..+++.|.+|++++++..
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~   54 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSIL   54 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechh
Confidence            589999999999999999999999999998643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=7e-07  Score=46.72  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=30.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|+|.|.+|+++|..|.+.|.+|.++|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            589999999999999999999999999997554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.31  E-value=3.7e-07  Score=53.30  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      ||+|||||++|+-+|..|++.|.+++|++..+..
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            7999999999999999999999998888765543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.30  E-value=3.4e-07  Score=50.43  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=32.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      +++|||+|..|+=.|..+++.|.+|+|+|+.+.+.
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            58899999999999999999999999999977653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.27  E-value=6.7e-07  Score=52.98  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~   35 (130)
                      ++|+|||||.+|+.+|..|.+.  +.+|+++|+++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            4799999999999999999987  5589999987654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.26  E-value=9.3e-07  Score=48.37  Aligned_cols=35  Identities=20%  Similarity=0.404  Sum_probs=31.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      .++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            58999999999999999999999999999976553

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.25  E-value=7.9e-07  Score=49.09  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=32.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      +++|||+|..|+=.|..+++.|.+|+++|+.+.+..
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~   63 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ   63 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc
Confidence            589999999999999999999999999999776544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.22  E-value=7.1e-07  Score=52.12  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||+|..|++.|..|+++|++|.++++++
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999863

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.20  E-value=8e-07  Score=51.59  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|||+|..|.++|..|.+.|++|+|++|+..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            589999999999999999999999999998643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.17  E-value=9.9e-07  Score=50.70  Aligned_cols=33  Identities=27%  Similarity=0.443  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|++|+-+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            68999999999999999865 7799999986543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.15  E-value=6.3e-06  Score=44.77  Aligned_cols=61  Identities=15%  Similarity=0.222  Sum_probs=41.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceec
Q 037740            2 QVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSS   78 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~   78 (130)
                      +++|||||+.|+-+|..+.+.   +.+|+++|+.+.+-..        +..         .......+.+++.|++....
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~--------~d~---------~~~~~l~~~l~~~GV~v~~~   84 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG--------FDH---------TLREELTKQLTANGIQILTK   84 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT--------SCH---------HHHHHHHHHHHHTTCEEEES
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc--------cch---------HHHHHHHHHHHhcCcEEEcC
Confidence            589999999999999887765   4579999997655320        000         01233446777888877654


Q ss_pred             c
Q 037740           79 D   79 (130)
Q Consensus        79 ~   79 (130)
                      .
T Consensus        85 ~   85 (117)
T d1aoga2          85 E   85 (117)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.13  E-value=1.8e-06  Score=47.94  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +.|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            4689999999999999999999999999999753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.09  E-value=1.2e-06  Score=51.22  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|||+|++|+.+|..|.+.|.++.+++..+.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            589999999999999999999988777665433

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=3.1e-06  Score=48.53  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      ++|+|||+|..|...|..|++.|++|+++.|++..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            47999999999999999999999999999987653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.4e-06  Score=51.24  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~   34 (130)
                      ++++|||+|++|+.+|..|.+.++  +|+++++.+.
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            468999999999999999998865  6999987544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.03  E-value=4.6e-06  Score=45.27  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHC---CCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA---GVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~---g~~v~v~E~~~~~g   36 (130)
                      +++|||||+.|+-+|..+++.   |.+|+++|+.+.+.
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            589999999999999877664   88999999977653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1e-05  Score=45.11  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             cEEEEccCHHHHHHHHHHHH----CCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAK----AGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~----~g~~v~v~E~~~~~g   36 (130)
                      +++|||||++|+-+|..|++    .|.+|+++|+++.+.
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            58999999999998888864    489999999977654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.93  E-value=6.2e-06  Score=45.70  Aligned_cols=33  Identities=30%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+++|+|.|..|...|..|.+.|++|+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            368999999999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6e-06  Score=48.75  Aligned_cols=32  Identities=44%  Similarity=0.663  Sum_probs=30.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999999865

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.89  E-value=1.1e-05  Score=47.00  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|.+|+.|+..+...|.+|.++|.+.
T Consensus        31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          31 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.89  E-value=1.1e-05  Score=46.27  Aligned_cols=32  Identities=25%  Similarity=0.548  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|||+|.+|+.|+..+.+.|.+|.++|.+.
T Consensus        34 ~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          34 KVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            58999999999999999999999999999853

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.88  E-value=5.9e-06  Score=48.54  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||+|.-|...|..+++.|++|+++|+++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999865

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.80  E-value=1.3e-05  Score=47.60  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.|.|||.|-.|++.|..|++.|++|+++|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            468999999999999999999999999999753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.77  E-value=2.5e-05  Score=44.34  Aligned_cols=59  Identities=20%  Similarity=0.129  Sum_probs=42.0

Q ss_pred             EEEE--ccCHHHHHHHHHHHHCCCcEEEEecCCCCCCCeeeecccCcccccccccccCCCChhHHHHHHHcCCCceec
Q 037740            3 VAVI--GGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSS   78 (130)
Q Consensus         3 v~Ii--G~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~   78 (130)
                      ++|+  |+|..|+.+|..|++.|.+|+++|+.+.++..                 +.........+.+++.|+.....
T Consensus        42 vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-----------------~~~~~~~~~~~~l~~~GV~i~~~  102 (156)
T d1djqa2          42 VVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-----------------HFTLEYPNMMRRLHELHVEELGD  102 (156)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-----------------HHTTCHHHHHHHHHHTTCEEEET
T ss_pred             eEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-----------------cchhHHHHHHHHHhhccceEEec
Confidence            4554  99999999999999999999999997655320                 01112345566777788766543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.68  E-value=3.5e-05  Score=44.10  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|||.|.-|.+.|..|.+.|++|+++++++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            468999999999999999999999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.55  E-value=5.6e-05  Score=43.37  Aligned_cols=32  Identities=34%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|+.|+.+++.+...|.+|+++|+++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            47899999999999999999999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.52  E-value=0.00011  Score=39.44  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|||+|..|...|..|.+.|.+|+|+...
T Consensus        14 ~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          14 DCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.51  E-value=3e-05  Score=45.56  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=29.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|||+|.-|.+.|..|++.|++|.++.+++
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            58999999999999999999999999998753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.50  E-value=6.9e-05  Score=43.59  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=28.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ++|.|||+|.-|.+.|..|++.|.+|.++.|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            4789999999999999999999999999865

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.49  E-value=6.5e-05  Score=43.65  Aligned_cols=33  Identities=33%  Similarity=0.522  Sum_probs=29.9

Q ss_pred             CcEEEE-ccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVI-GGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~Ii-G~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|+|| |+|.-|.+.|..|++.|++|++..|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999 679999999999999999999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=5.2e-05  Score=42.74  Aligned_cols=30  Identities=30%  Similarity=0.592  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .++|||||..|+..|..|.+.|.+|+|+.+
T Consensus        15 rvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            589999999999999999999999999954

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.44  E-value=0.00011  Score=41.39  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.||| .|.-|.+.|..|.++|++|.+++++.
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            589999 69999999999999999999999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=9.6e-05  Score=42.48  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=28.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|+.|+.+++.+...|. +|+++|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            47899999999999999999998 688998764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.43  E-value=0.00013  Score=41.32  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=27.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~   33 (130)
                      +|+|||||-+++=+|..+.+.|.+ |+++.|.+
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            589999999999999999999875 77887754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00015  Score=41.73  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=29.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|+|+|-++.++++.|.+.|.++.|+.|+.
T Consensus        20 ~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          20 RILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            68999999999999999999999999998853

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.36  E-value=0.00014  Score=41.55  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|+.|+.++..+...|.+|+++++++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            47899999999999999988999999998754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.00016  Score=41.36  Aligned_cols=33  Identities=15%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|+|+|+.|+.++..+...|.+|+++++++.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            478999999999999888888999999998653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00018  Score=41.70  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|+.|+.+...+...|. +|+++++++
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             EEEEECCCccchhheeccccccccccccccccc
Confidence            47899999999999999999998 688998754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.20  E-value=0.00019  Score=40.80  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=30.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|.|||-|.-|...|..|.++|++|.++++++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            4689999999999999999999999999998643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00033  Score=40.05  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|+.|+.+...+...|.++++++.++
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            48899999999999999988999999888654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.19  E-value=0.00042  Score=38.60  Aligned_cols=33  Identities=36%  Similarity=0.641  Sum_probs=29.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .+|.|||+|-.|.+.|+.|...+.  +++++|.++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            478999999999999999999874  899999765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00043  Score=38.92  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|.|..|...+..|.+.|.+++++|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            38999999999999999999999999999865

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.15  E-value=0.00042  Score=39.92  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|.|||-|.-|...|..|.++|++|.++++++
T Consensus         4 nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             cEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            58899999999999999999999999999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00058  Score=36.44  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|.|+|||=-|...|..+.+.|+++.++|+++.
T Consensus        13 kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          13 RVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             EEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             EEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            589999999999999999999999999998653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.13  E-value=0.00038  Score=39.36  Aligned_cols=32  Identities=38%  Similarity=0.606  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|+..++ +++++|.++
T Consensus         9 KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           9 KVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            68999999999999999998876 789998754

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.12  E-value=0.00036  Score=39.10  Aligned_cols=32  Identities=28%  Similarity=0.608  Sum_probs=28.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|+..+.  +++++|.+.
T Consensus         7 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           7 KVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            68999999999999999999874  899999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.09  E-value=0.00032  Score=40.43  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|+.|++++..+...|. +|+++++++
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            58999999999999999998897 688888754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.08  E-value=0.00023  Score=41.77  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=28.0

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +.|.|||.|-.||..|..++ .|++|+.+|-++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            46899999999999998776 699999999764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=0.00042  Score=39.66  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|+|+|+|-++.++++.|.+.|. ++.|+.|+.
T Consensus        19 ~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          19 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             CEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            58999999999999999999997 789998753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.05  E-value=0.00052  Score=39.53  Aligned_cols=33  Identities=30%  Similarity=0.562  Sum_probs=30.2

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|||-|.-|...|..|.++|++|.++++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            368899999999999999999999999998853

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.04  E-value=0.00062  Score=37.93  Aligned_cols=33  Identities=33%  Similarity=0.562  Sum_probs=28.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~~   34 (130)
                      +|.|||+|-.|.++|+.+...+.  +++++|.+..
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            68999999999999999999876  7999997653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.03  E-value=0.00045  Score=40.55  Aligned_cols=32  Identities=31%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|+|+|+|+.|++++..+...|. +|++++.++
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            58899999999999999888776 677888754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.02  E-value=0.00055  Score=39.44  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=27.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~   33 (130)
                      .|+|+|+|+.|++++..+...|.+ |++.|.++
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            489999999999999999999985 66777654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.00042  Score=38.92  Aligned_cols=32  Identities=34%  Similarity=0.728  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|...+.  +++++|.++
T Consensus         8 KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            58999999999999999999876  799998754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.01  E-value=0.00055  Score=38.17  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=28.7

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      ++|.|||+|-.|.++|+.+...+.  +++++|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            478999999999999999998875  699998754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.01  E-value=0.00051  Score=38.35  Aligned_cols=32  Identities=38%  Similarity=0.635  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.+...+.  +++++|.++
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            68999999999999999999976  799998754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.95  E-value=0.00068  Score=37.92  Aligned_cols=33  Identities=45%  Similarity=0.697  Sum_probs=28.7

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .+|.|||+ |..|.++|+.|...+.  +++++|.++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            47899995 9999999999999885  899998753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.94  E-value=0.00073  Score=37.62  Aligned_cols=32  Identities=31%  Similarity=0.584  Sum_probs=27.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|+..+. +++++|.++
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            58999999999999999998876 888898654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00071  Score=37.59  Aligned_cols=33  Identities=30%  Similarity=0.612  Sum_probs=28.4

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .+|.|||+|-.|.++|+.+...+.  +++++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            478999999999999999998865  799998753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0007  Score=38.54  Aligned_cols=32  Identities=28%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|+|-|..|..+|..+...|.+|++.|.++
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            57899999999999999999999999999876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.92  E-value=0.00074  Score=38.91  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             EEEEccCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGV-DVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~   34 (130)
                      |+|+|+|+.|+.+...+...|. +|+++|.++.
T Consensus        33 VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          33 CVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            8899999999999999999985 7999997653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.91  E-value=0.00064  Score=38.62  Aligned_cols=32  Identities=34%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|||-|.-|...|..|.++|++|.++++++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            58899999999999999999999999999863

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.90  E-value=0.00079  Score=37.68  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=28.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|...|.  +++++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999999998875  788998753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.85  E-value=0.0009  Score=37.53  Aligned_cols=33  Identities=30%  Similarity=0.285  Sum_probs=29.8

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|||.|.-|.+.|..|.+.|++++++++.+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            468999999999999999999999999997654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.85  E-value=0.001  Score=37.77  Aligned_cols=32  Identities=22%  Similarity=0.456  Sum_probs=29.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|...|.  +++++|.+.
T Consensus        22 KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          22 KITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            58999999999999999999987  899999753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.83  E-value=0.00084  Score=37.48  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=27.8

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+ |..|.++|+.|...+.  +++++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6899995 9999999999999876  688998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00074  Score=40.96  Aligned_cols=31  Identities=35%  Similarity=0.507  Sum_probs=28.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||.|..|..+|..|++.|. +++++|.+
T Consensus        32 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          32 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            58999999999999999999998 78888864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.82  E-value=0.00074  Score=38.34  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|-|..|-.+|..|...|.+|+|.|.+|.
T Consensus        25 ~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          25 IVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             EEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            589999999999999999999999999999764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.81  E-value=0.00066  Score=38.55  Aligned_cols=32  Identities=28%  Similarity=0.281  Sum_probs=28.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|+.|+.++..+...|.+|.+++.++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            47899999999999999999999999998643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.81  E-value=0.0011  Score=37.75  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=28.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .|.|||.|.-|.+.|..|.+.|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            48999999999999999999986  677788864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00095  Score=37.89  Aligned_cols=32  Identities=25%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.|...++  +++++|.+.
T Consensus        21 KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          21 KITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            58999999999999999999876  799998753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.72  E-value=0.0016  Score=36.52  Aligned_cols=32  Identities=25%  Similarity=0.551  Sum_probs=27.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|.|||+|-.|.++|+.+...+. +++++|.++
T Consensus         5 KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           5 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            68999999999999998888865 788998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.70  E-value=0.001  Score=38.11  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|+|-++.++++.|.+.+.++.|+.|+.
T Consensus        20 ~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          20 HVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             EEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            58999999999999999999888999998864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0012  Score=32.74  Aligned_cols=32  Identities=25%  Similarity=0.221  Sum_probs=29.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|.|+|+|=-|...+....+.|+++.+++.++
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            57899999999999999999999999998754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.67  E-value=0.0012  Score=34.79  Aligned_cols=32  Identities=19%  Similarity=0.098  Sum_probs=27.3

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .+|+|||+|.+|.=.|..|++...+++++-+.
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            37999999999999999999888887766553

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0024  Score=36.83  Aligned_cols=33  Identities=21%  Similarity=0.399  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~~   34 (130)
                      +|+|||+|-++.++++.|.+.|. +++|+.|+..
T Consensus        20 ~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          20 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             EEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            58999999999999999999987 6789888643

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0023  Score=34.72  Aligned_cols=33  Identities=45%  Similarity=0.514  Sum_probs=29.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      +|+|||+|-+.+-.|..|++...+|+++-|.+.
T Consensus        32 ~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          32 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             eEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            699999999999999999999889999977554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.54  E-value=0.0017  Score=37.27  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=27.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|+.|+++...+...|. +|.+++.++
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            47999999999999999999986 677887754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.53  E-value=0.0013  Score=37.77  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=26.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +|+|||+|-++-++++.|.+.| ++.|+.|+
T Consensus        20 ~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          20 NIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             EEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            5899999999999999998777 89999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.49  E-value=0.0017  Score=37.15  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEE-EEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVV-LYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~-v~E~~~   33 (130)
                      +|+|+|+|+.|++++..+...|.+++ +.++++
T Consensus        31 ~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          31 SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             EEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            58999999999999999988888665 556543

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0023  Score=34.74  Aligned_cols=34  Identities=35%  Similarity=0.604  Sum_probs=30.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|-+.+-.|..|++...+|+++-|.+..
T Consensus        29 ~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          29 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            6999999999999999999999999999876543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.43  E-value=0.0021  Score=36.04  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +++.|||+|--|.+.|..|.+.++++.+.+++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            468999999999999999999999999998853

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0032  Score=33.86  Aligned_cols=33  Identities=18%  Similarity=0.471  Sum_probs=28.4

Q ss_pred             cEEEEccCH-----------HHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGI-----------SGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~-----------~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|||+|+           ++..|+..|.+.|++++++..|+.
T Consensus         6 kvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           6 KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             EEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             EEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            589999996           488888899999999999987764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.25  E-value=0.0039  Score=35.57  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=27.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|..|++++..+...|. +|++++.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            37999999999999999999975 788887754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.24  E-value=0.0035  Score=34.21  Aligned_cols=34  Identities=38%  Similarity=0.588  Sum_probs=30.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|-+.+-.|..|++...+|+++-|.+..
T Consensus        36 ~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          36 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             EEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            7999999999999999999999999999876654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.24  E-value=6.2e-05  Score=45.39  Aligned_cols=35  Identities=11%  Similarity=0.178  Sum_probs=31.3

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG   36 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~g   36 (130)
                      .++|||+|..|+-+|..|++.|.+|+++++.+...
T Consensus       182 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         182 PRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             CCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             ceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            47899999999999999999999999999876654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0044  Score=36.17  Aligned_cols=32  Identities=25%  Similarity=0.529  Sum_probs=29.1

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|+| +|..|...+..|.++|++|+++.|++
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            589999 59999999999999999999998754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.24  E-value=0.0035  Score=38.25  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .+|+|+|| |..|...+..|.+.|++|.++.|++.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            36899996 99999999999999999999998643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.17  E-value=0.0033  Score=35.09  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=28.9

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCC-CcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLAKAG-VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g-~~v~v~E~~~   33 (130)
                      +++.+||+|--|.+.|..|.+.| +++.+++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            46899999999999999888876 8999999864

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.16  E-value=0.0056  Score=35.50  Aligned_cols=32  Identities=34%  Similarity=0.494  Sum_probs=28.5

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|.| +|..|..+|..|++.|.+|+++.|+.
T Consensus        25 ~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            477888 68999999999999999999998864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.15  E-value=0.0034  Score=35.73  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=26.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|+.|+.++..+...|. .|++.++++
T Consensus        35 ~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          35 YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            47899999999999999888776 566777754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.10  E-value=0.0052  Score=34.95  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=26.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+|+|+.|++++..++..+. +|+++++++
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            37899999999999999999866 577887754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.08  E-value=0.0054  Score=33.99  Aligned_cols=30  Identities=30%  Similarity=0.596  Sum_probs=26.7

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCC--cEEEEec
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGV--DVVLYEK   31 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~--~v~v~E~   31 (130)
                      +|.||| +|-.|.++|+.+...+.  +++++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            589999 69999999999999976  7888885

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0022  Score=36.12  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=22.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcE
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDV   26 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v   26 (130)
                      +|+|||+|..|+-+|..+.+.|.++
T Consensus        31 rVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          31 KVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             EEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ceEEEcCchhHHHHHHHHHHcCCcc
Confidence            6899999999999999999998754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0063  Score=33.82  Aligned_cols=33  Identities=39%  Similarity=0.617  Sum_probs=26.4

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHC---CCcEEEEecCC
Q 037740            1 MQVAVIG-GGISGLASAFVLAKA---GVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~---g~~v~v~E~~~   33 (130)
                      .+|.||| +|-.|.++|+.|...   ..+++++|.++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4789999 599999999988643   45899998643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.96  E-value=0.0059  Score=34.47  Aligned_cols=31  Identities=32%  Similarity=0.458  Sum_probs=27.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .++|||+|-.|...+..|...|. +++|.-|.
T Consensus        26 ~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          26 TVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            48999999999999999999998 58888774

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.95  E-value=0.0054  Score=37.62  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=29.0

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|+|+|| |..|...+..|.+.|++|+++.|+.
T Consensus         5 KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           5 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            6899995 9999999999999999999998754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0045  Score=33.60  Aligned_cols=33  Identities=21%  Similarity=0.399  Sum_probs=28.0

Q ss_pred             cEEEEccCH-----------HHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGI-----------SGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~-----------~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|||+|+           ++..+...|.+.|++++++..++.
T Consensus         9 kvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           9 SILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             EEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             EEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            589999997           477888888889999999987764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.81  E-value=0.0059  Score=34.58  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=26.8

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .|+|+| +|+.|+.++..+...|. +|++.++++
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccch
Confidence            489999 59999999999888885 788888754

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.77  E-value=0.012  Score=33.90  Aligned_cols=36  Identities=31%  Similarity=0.378  Sum_probs=31.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      .|.|||.|..|...|..+...|.+|.++++...-+.
T Consensus        44 ~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~   79 (181)
T d1qp8a1          44 KVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP   79 (181)
T ss_dssp             EEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             eEEEeccccccccceeeeeccccccccccccccccc
Confidence            488999999999999999999999999998665443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.76  E-value=0.0059  Score=31.45  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=26.7

Q ss_pred             cEEEEccCHHHHHH-HHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLAS-AFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~-a~~l~~~g~~v~v~E~~   32 (130)
                      .+-+||-|-+|+++ |..|.+.|++|..-|..
T Consensus        10 ~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1          10 QIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             EEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46789988888888 99999999999999874

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.70  E-value=0.011  Score=34.72  Aligned_cols=31  Identities=29%  Similarity=0.371  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|.|.|-.|..+|..|.+.|.+|++.|.+
T Consensus        29 ~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          29 TVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            5899999999999999999999999999864

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.63  E-value=0.0028  Score=34.44  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=25.0

Q ss_pred             cEEEEccCHHHHHHHHHHHH-CCCcEE-EEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAK-AGVDVV-LYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~-~g~~v~-v~E~~~~~   35 (130)
                      .|+|+|+|-+|.+.+..+.+ .+++++ .+|-++..
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            58999999999988876654 377765 55655444

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.57  E-value=0.0047  Score=37.49  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=29.6

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|+|.|| |..|...+..|.+.|++|+.++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            36899997 9999999999999999999998753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0082  Score=39.31  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      +|+|||+|..|..+|..|+..|. +++++|.+.
T Consensus        39 kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          39 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            69999999999999999999998 789998743

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.43  E-value=0.018  Score=33.61  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=29.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|.|||.|-.|...|..|...|.+|..+++...
T Consensus        47 tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          47 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eeeeeecccccccccccccccceeeeccCCccc
Confidence            488999999999999999999999999998544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.28  E-value=0.013  Score=33.17  Aligned_cols=32  Identities=28%  Similarity=0.281  Sum_probs=25.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCc-EEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVD-VVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~-v~v~E~~~   33 (130)
                      .|+|+|+|..|+.+...+...|.+ |++.++++
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            378999999999999999999865 55666543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.016  Score=36.30  Aligned_cols=31  Identities=32%  Similarity=0.563  Sum_probs=28.3

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ++|+|+| +|..|...+..|.+.|++|+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            4689999 799999999999999999999986

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.016  Score=32.81  Aligned_cols=31  Identities=26%  Similarity=0.311  Sum_probs=26.4

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|+|+ |..|+++...+...|.+|++...+
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeccccccccccccccccCccccccccc
Confidence            3789995 999999988888889999888654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.13  E-value=0.018  Score=33.79  Aligned_cols=31  Identities=29%  Similarity=0.571  Sum_probs=27.5

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .+|+|||+|-+|.=+|..+++.+.+++++=+
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            3699999999999999999999988877754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.06  E-value=0.026  Score=32.91  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|.|||-|-.|...|..|...|.+|..+++.
T Consensus        45 ~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          45 VVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             eEEEecccccchhHHHhHhhhcccccccCcc
Confidence            5789999999999999999999999999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.98  E-value=0.027  Score=33.72  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=25.8

Q ss_pred             cE-EEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QV-AVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv-~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +| +|.|+ +-.|+++|..|++.|++|++.+++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            45 45564 5579999999999999999998754

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.92  E-value=0.021  Score=34.03  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=27.8

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|.|+ +-.|.+.|..|++.|++|.+++++..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4788885 45599999999999999999988653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.87  E-value=0.028  Score=35.39  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +.|+|.| +|..|...+..|.++|++|+++++.
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            3688998 8999999999999999999999864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.85  E-value=0.029  Score=35.10  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=29.1

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|.| +|..|...+..|.+.|++|.++++..
T Consensus        10 kILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_          10 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            589999 78999999999999999999998754

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.84  E-value=0.032  Score=35.00  Aligned_cols=32  Identities=28%  Similarity=0.262  Sum_probs=28.6

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+| +|..|...+..|.+.|++|+++-|++
T Consensus         5 tIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             EEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            589999 59999999999999999999997753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.84  E-value=0.018  Score=32.67  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|.|+ |+.|+.+...+...|.+|+..++++
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEEeccccchhhhhhhhcccccccccccccc
Confidence            3678895 9999999988888899998887643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.77  E-value=0.015  Score=31.27  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=26.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|+|.|..|...+..|.  +..+.++|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            6899999999999999884  667888988654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.03  Score=33.49  Aligned_cols=32  Identities=34%  Similarity=0.475  Sum_probs=26.4

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|.||+. .|.+.|..|++.|++|++.+++..
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            46777544 599999999999999999998653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.028  Score=34.02  Aligned_cols=31  Identities=29%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|++ -.|.++|..|++.|++|++.+++.
T Consensus        13 ~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6788854 459999999999999999998764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.60  E-value=0.035  Score=32.23  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=29.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||.|-.|...|..|...|.+|..+++..
T Consensus        51 tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          51 TLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eEEEeccccccccceeeeeccccceeeccCcc
Confidence            47899999999999999999999999998753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.53  E-value=0.047  Score=27.50  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=24.8

Q ss_pred             cEEEEccCHHHHHH-HHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLAS-AFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~-a~~l~~~g~~v~v~E~~   32 (130)
                      +|-+||-|-+|+++ |..|.+.|+.|..-|..
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~   34 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIE   34 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            56688977777755 88888999999999864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.53  E-value=0.036  Score=34.05  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=26.2

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.| ++-.|.++|..|++.|++|++.+++.
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            45666 66779999999999999999999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.48  E-value=0.034  Score=32.93  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=26.3

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|-|+ +-.|.+.|..|++.|++|++.+++..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            455564 56799999999999999999998654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.45  E-value=0.033  Score=33.78  Aligned_cols=33  Identities=12%  Similarity=0.081  Sum_probs=27.6

Q ss_pred             cEEEEcc-C--HHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGG-G--ISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~-G--~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|.|+ |  -.|.++|..|++.|++|++..+++.
T Consensus         7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3678885 3  4899999999999999999998653

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.45  E-value=0.038  Score=31.57  Aligned_cols=30  Identities=43%  Similarity=0.548  Sum_probs=27.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .|+|||-|+-|-+-|..|...|.+|+|==|
T Consensus        18 ~IaViGYGsQG~AhAlNLrDSG~~V~VGLr   47 (182)
T d1np3a2          18 KVAIIGYGSQGHAHACNLKDSGVDVTVGLR   47 (182)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             EEEEEeeCcHhHHHHhhhhhcCCCEEEEcC
Confidence            589999999999999999999999988544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.38  E-value=0.034  Score=33.81  Aligned_cols=31  Identities=29%  Similarity=0.481  Sum_probs=25.5

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|+ +-.|.+.|..|++.|.+|++.+++.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           9 AIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            566674 4469999999999999999998864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.037  Score=33.20  Aligned_cols=31  Identities=29%  Similarity=0.371  Sum_probs=26.0

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|++ -.|.+.|..|++.|++|++.+++.
T Consensus        10 ~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_          10 VLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5677854 459999999999999999998864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.037  Score=33.23  Aligned_cols=31  Identities=29%  Similarity=0.483  Sum_probs=25.8

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-||+. .|...|..|++.|.+|++.+++.
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45667555 59999999999999999999864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.28  E-value=0.032  Score=33.75  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=26.6

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|.||+- .|.++|..|++.|++|++.+++..
T Consensus        12 alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_          12 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56777554 699999999999999999998653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.25  E-value=0.038  Score=33.47  Aligned_cols=31  Identities=35%  Similarity=0.545  Sum_probs=25.9

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|++ -.|.++|..|++.|.+|++.+++.
T Consensus         8 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           8 CLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5677864 469999999999999999998863

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.21  E-value=0.048  Score=32.43  Aligned_cols=33  Identities=21%  Similarity=0.217  Sum_probs=27.8

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|.|+ +-.|.+.|..|+++|++|.+++++..
T Consensus         4 ~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4788996 45699999999999999999987543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.21  E-value=0.037  Score=33.30  Aligned_cols=32  Identities=31%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             EEEEccC---HHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIGGG---ISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG~G---~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|.|+.   -.|.+.|..|++.|.+|++..+++.
T Consensus        11 alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_          11 ALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            6788853   3799999999999999998887643

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.18  E-value=0.056  Score=33.26  Aligned_cols=33  Identities=27%  Similarity=0.208  Sum_probs=29.2

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+|.| +|..|...+..|.++|++|..+++...
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            588999 699999999999999999999988543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.11  E-value=0.042  Score=33.10  Aligned_cols=31  Identities=35%  Similarity=0.386  Sum_probs=26.0

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|++ -.|.+.|..|++.|.+|++.+++.
T Consensus         8 ~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           8 ALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5677854 469999999999999999998863

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.10  E-value=0.056  Score=32.55  Aligned_cols=32  Identities=38%  Similarity=0.471  Sum_probs=26.2

Q ss_pred             cE-EEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QV-AVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv-~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +| +|-|++ -.|.+.|..|++.|.+|++.+++.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56 555754 469999999999999999999864

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.044  Score=32.83  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|++ -.|.++|..|++.|++|++.+++.
T Consensus         8 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           8 ALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5777854 469999999999999999998853

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.064  Score=30.85  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=29.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .+.|||.|..|...|..+...|.+|..+++...
T Consensus        46 ~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          46 KLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEeecccchhhhhhhcccccceEeecccccc
Confidence            478999999999999999999999999987543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.99  E-value=0.046  Score=34.82  Aligned_cols=30  Identities=37%  Similarity=0.587  Sum_probs=27.3

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcEEEEe
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDVVLYE   30 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E   30 (130)
                      .+|+|.| +|..|...+..|.+.|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            3688998 79999999999999999999996

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.047  Score=32.90  Aligned_cols=31  Identities=29%  Similarity=0.154  Sum_probs=25.7

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|+ +-.|.++|..|++.|.+|++.+++.
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456675 4469999999999999999998864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.96  E-value=0.06  Score=32.13  Aligned_cols=37  Identities=32%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCCCCCCCe
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKEDSLGGHA   39 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~~~gg~~   39 (130)
                      ++|-|++ -.|.++|..|++.|.+|++.+++.......
T Consensus        10 ~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   47 (237)
T d1uzma1          10 VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL   47 (237)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCc
Confidence            5666754 469999999999999999999976655433

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=93.93  E-value=0.054  Score=32.54  Aligned_cols=32  Identities=31%  Similarity=0.283  Sum_probs=26.3

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|-| ++-.|.+.|..|++.|.+|++.++++.
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           8 VLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56667 455699999999999999999998653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.031  Score=33.96  Aligned_cols=31  Identities=35%  Similarity=0.470  Sum_probs=26.2

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.||.. .|.+.|..|++.|.+|++..|+.
T Consensus        17 alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          17 VIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            66778555 59999999999999999998854

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.061  Score=32.21  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=25.3

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.| ++-.|.+.|..|++.|++|++.++++
T Consensus         9 alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           9 IILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            34444 66679999999999999999998864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.88  E-value=0.05  Score=32.88  Aligned_cols=31  Identities=35%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|++. .|.+.|..|++.|.+|++.+++.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           8 VIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57788654 59999999999999999998854

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.045  Score=32.81  Aligned_cols=33  Identities=15%  Similarity=0.265  Sum_probs=26.6

Q ss_pred             cEEEEccCH---HHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGI---SGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~---~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .++|.|++.   .|.++|..|++.|++|++..+++.
T Consensus         7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            366777653   688999999999999999988654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.86  E-value=0.051  Score=32.25  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=27.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~~   33 (130)
                      .++|.|+|.+|+..|..+.+.+. ++.++|+..
T Consensus        28 riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          28 KVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             EEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            58999999999999999988876 678888853

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.85  E-value=0.05  Score=32.89  Aligned_cols=31  Identities=35%  Similarity=0.517  Sum_probs=25.9

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|++. .|.++|..|++.|.+|++.+++.
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           7 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56677554 59999999999999999999864

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.84  E-value=0.053  Score=31.21  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=28.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||.|..|...|..|...|.+|..+++..
T Consensus        46 ~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          46 HVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             ceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            47899999999999999998999999998754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.83  E-value=0.055  Score=32.46  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=25.8

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|++ -.|.+.|..|++.|++|++.++++
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           8 AVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            4667754 469999999999999999998864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.83  E-value=0.046  Score=32.94  Aligned_cols=31  Identities=23%  Similarity=0.174  Sum_probs=25.4

Q ss_pred             cEEEEcc-CH--HHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGG-GI--SGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~-G~--~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .++|.|+ |.  .|.++|..|++.|.+|++..++
T Consensus         8 ~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3678884 43  7999999999999999988764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.74  E-value=0.041  Score=33.20  Aligned_cols=31  Identities=19%  Similarity=0.158  Sum_probs=26.2

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|+ +-.|.++|..|++.|.+|++.+++.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           8 ALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            567785 5569999999999999999999863

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.72  E-value=0.068  Score=30.65  Aligned_cols=32  Identities=34%  Similarity=0.334  Sum_probs=28.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||.|..|...|..+...|.+|..+++..
T Consensus        46 ~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1          46 TVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            47899999999999999998999999998743

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.72  E-value=0.05  Score=30.85  Aligned_cols=33  Identities=27%  Similarity=0.570  Sum_probs=23.7

Q ss_pred             CcEEEEccCHHHHHHHHH--HHHC----CCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFV--LAKA----GVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~--l~~~----g~~v~v~E~~~   33 (130)
                      +++.|||+|..|.+.++.  +...    +.+++++|.++
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            468999999999876542  2322    35899998864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.63  E-value=0.057  Score=32.95  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=26.3

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|| +-.|.++|..|++.|.+|++.+++.
T Consensus         8 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           8 VLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            567785 4569999999999999999998864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.056  Score=33.41  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.||+ -.|.++|..|++.|++|++..++.
T Consensus        15 alITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          15 AIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5677754 469999999999999999998853

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.061  Score=31.95  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=27.0

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|.|+ +-.|.+.|..|++.|++|++.+++.
T Consensus         6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3678885 4569999999999999999998864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.58  E-value=0.061  Score=32.18  Aligned_cols=31  Identities=29%  Similarity=0.362  Sum_probs=26.1

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|+ +-.|.+.|..|++.|++|++.+++.
T Consensus         8 ~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           8 VLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            567775 4579999999999999999998864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.54  E-value=0.039  Score=33.21  Aligned_cols=31  Identities=26%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|| +-.|.++|..|++.|.+|++.+++.
T Consensus        13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            456675 4569999999999999999999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.52  E-value=0.062  Score=32.49  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=26.1

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|++ -.|.+.|..|++.|.+|++.+++.
T Consensus        11 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_          11 ALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5677865 469999999999999999998864

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.51  E-value=0.021  Score=31.85  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=23.4

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCC-------cEEEEec
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGV-------DVVLYEK   31 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~-------~v~v~E~   31 (130)
                      +|.|||| |..|.++|+.|...+.       ..++++.
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~   42 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI   42 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC
Confidence            6899995 9999999999987532       3556654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.07  Score=32.92  Aligned_cols=30  Identities=20%  Similarity=0.358  Sum_probs=27.3

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .|+|.| +|..|...+..|.+.|++|+.+++
T Consensus         3 KIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           3 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            588998 788999999999999999999975

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.47  E-value=0.078  Score=31.97  Aligned_cols=31  Identities=39%  Similarity=0.429  Sum_probs=24.5

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|+ +-.|.+.|..|++.|.+|++..+++
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            344454 4469999999999999999998753

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.066  Score=32.20  Aligned_cols=31  Identities=29%  Similarity=0.475  Sum_probs=26.2

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|+ +-.|.+.|..|++.|.+|++.+++.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           9 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            567775 4569999999999999999999864

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.36  E-value=0.085  Score=31.46  Aligned_cols=31  Identities=26%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+|-|.|-.|..+|..|.+.|.++++.+-+
T Consensus        41 ~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          41 AVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            5899999999999999999999999998754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.35  E-value=0.066  Score=31.67  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=26.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--------------------C-CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--------------------G-VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--------------------g-~~v~v~E~~~   33 (130)
                      +|+|||+|-.++=+|..|.+.                    | .+|.++.|..
T Consensus        41 ~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          41 TAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             EEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             eEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            589999999999999999883                    4 3788997754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.31  E-value=0.088  Score=31.67  Aligned_cols=30  Identities=30%  Similarity=0.379  Sum_probs=24.5

Q ss_pred             EEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            4 AVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         4 ~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|-|+ +-.|.+.|..|++.|++|++.+++.
T Consensus         6 lITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           6 LVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             EEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45564 4469999999999999999998863

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.24  E-value=0.076  Score=31.15  Aligned_cols=19  Identities=37%  Similarity=0.478  Sum_probs=17.4

Q ss_pred             cEEEEccCHHHHHHHHHHH
Q 037740            2 QVAVIGGGISGLASAFVLA   20 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~   20 (130)
                      +|+|||+|-+++=+|..|.
T Consensus        41 ~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          41 RAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             EEEEECCSHHHHHHHHHHH
T ss_pred             eEEEECCCchhHhhhhhhc
Confidence            5899999999999998887

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.23  E-value=0.093  Score=31.65  Aligned_cols=31  Identities=26%  Similarity=0.220  Sum_probs=27.0

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.| ++-.|.++|..|++.|.+|++..+++
T Consensus         9 alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           9 ALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            67888 55579999999999999999999864

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.22  E-value=0.093  Score=31.77  Aligned_cols=31  Identities=29%  Similarity=0.243  Sum_probs=24.8

Q ss_pred             cEEEE-cc-CHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVI-GG-GISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~Ii-G~-G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      -|+|| |+ +-.|.+.|..|++.|.+|++..+.
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            36666 54 567999999999999999987654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.095  Score=32.54  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=28.1

Q ss_pred             cE-EEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QV-AVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv-~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .| +|.| +|..|.....+|.++|++|+.+++.+
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            57 6888 68999999999999999999999854

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.07  Score=33.60  Aligned_cols=31  Identities=23%  Similarity=0.249  Sum_probs=26.7

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      |+|.| +|..|..++.+|.+.|++|+++++..
T Consensus         4 vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            45888 89999999999999999999999843

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.19  E-value=0.028  Score=31.62  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             CcEEEEccCHHHHHHHHHHH--HC----CCcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASAFVLA--KA----GVDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~--~~----g~~v~v~E~~~   33 (130)
                      .+|.|||+|..|.+.++...  ..    .-+++++|.++
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~   39 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE   39 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence            36899999988877665432  22    34799998754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.18  E-value=0.08  Score=30.15  Aligned_cols=30  Identities=30%  Similarity=0.374  Sum_probs=23.6

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCC-------cEEEEec
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGV-------DVVLYEK   31 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~-------~v~v~E~   31 (130)
                      .|.|+|| |..|.++++.|++...       .+.++|.
T Consensus        26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di   63 (175)
T d7mdha1          26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS   63 (175)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecC
Confidence            5899996 9999999999998532       4556665

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.15  E-value=0.078  Score=31.77  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=25.8

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|+ +-.|.+.|..|++.|++|++.++++
T Consensus         9 alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           9 ALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456675 4469999999999999999998864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.053  Score=32.48  Aligned_cols=31  Identities=29%  Similarity=0.225  Sum_probs=25.0

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|+ +-.|.+.|..|++.|++|++.+++.
T Consensus         7 alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            445574 4459999999999999999999864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.07  E-value=0.056  Score=31.43  Aligned_cols=28  Identities=25%  Similarity=0.207  Sum_probs=24.3

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEE
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLY   29 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~   29 (130)
                      .|+|.| +|..|...+..|.+.|+++.|+
T Consensus         5 tVlVtGatG~iG~~l~~~Ll~~g~~v~v~   33 (252)
T d2q46a1           5 TVLVTGASGRTGQIVYKKLKEGSDKFVAK   33 (252)
T ss_dssp             EEEEESTTSTTHHHHHHHHHHTTTTCEEE
T ss_pred             EEEEECCccHHHHHHHHHHHHCCCcEEEE
Confidence            588999 6999999999999999876554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.04  E-value=0.1  Score=30.11  Aligned_cols=32  Identities=19%  Similarity=0.224  Sum_probs=28.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+.|||.|-.|...|..+...|.++..+++..
T Consensus        49 tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          49 TLGIYGFGSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ceEEeecccchHHHHHHHHhhccccccccccc
Confidence            47899999999999999999999999998743

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.97  E-value=0.051  Score=33.07  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=25.3

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|+ +-.|.+.|..|++.|.+|++.+++.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           8 VIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            556674 4459999999999999999998864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.88  E-value=0.053  Score=33.04  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=25.0

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|++ -.|.+.|..|++.|.+|++.+++.
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4566643 459999999999999999998864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.80  E-value=0.057  Score=32.66  Aligned_cols=31  Identities=26%  Similarity=0.225  Sum_probs=25.1

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|++ -.|.++|..|++.|.+|++.+++.
T Consensus        11 alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_          11 VLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4566644 359999999999999999998864

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.79  E-value=0.095  Score=31.26  Aligned_cols=32  Identities=25%  Similarity=0.432  Sum_probs=26.7

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      ++|.|++- .|.+.|..|++.|++|.+..|+..
T Consensus         8 alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           8 ILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56778655 699999999999999999988643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.76  E-value=0.12  Score=31.26  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=25.0

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.| ++-.|.+.|..|++.|.+|++.+++.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           8 AIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34555 45569999999999999999998864

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.058  Score=36.19  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC-cEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~-~v~v~E~~   32 (130)
                      .|+|||+|..|.-+|..|+..|. +++++|.+
T Consensus        27 ~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          27 HVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             EEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            58999999999999999999997 78898763

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.14  Score=31.85  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=28.0

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +|+|.| +|..|...+..|.+.|++|+++++.
T Consensus         4 KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             eEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            488888 7999999999999999999999863

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.69  E-value=0.1  Score=31.34  Aligned_cols=31  Identities=16%  Similarity=0.083  Sum_probs=25.0

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.||. -.|+++|..|++.|.+|+++-+..
T Consensus         8 vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             EEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            6777755 469999999999999998886543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.64  E-value=0.082  Score=32.26  Aligned_cols=30  Identities=27%  Similarity=0.225  Sum_probs=25.8

Q ss_pred             cEEEEccC---HHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIGGG---ISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G---~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .++|.|++   -.|.+.|..|++.|.+|++..+
T Consensus        10 ~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_          10 RAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             EEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            36788875   5899999999999999998865

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.58  E-value=0.067  Score=32.38  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.| ++-.|.+.|..|++.|.+|++..++.
T Consensus        10 alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_          10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45556 45569999999999999999998864

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.37  E-value=0.11  Score=31.09  Aligned_cols=29  Identities=34%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEe
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYE   30 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E   30 (130)
                      .|+|-|.|-.|..+|..|.+.|.+|+.+.
T Consensus        33 ~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          33 TVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            58999999999999999999999987664

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.35  E-value=0.086  Score=32.64  Aligned_cols=35  Identities=34%  Similarity=0.423  Sum_probs=26.8

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCCCCCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKEDSLGG   37 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~~~gg   37 (130)
                      ++|-|++. .|.+.|..|++.|.+|++.+++....+
T Consensus        10 alITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~   45 (302)
T d1gz6a_          10 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKG   45 (302)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhh
Confidence            45557444 499999999999999999987654433

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.35  E-value=0.14  Score=31.86  Aligned_cols=29  Identities=31%  Similarity=0.467  Sum_probs=25.3

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      |+|.| +|..|......|.+.|++|+++++
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            45666 789999999999999999999975

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.35  E-value=0.041  Score=30.59  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.9

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCC
Q 037740            2 QVAVIGG-GISGLASAFVLAKAG   23 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g   23 (130)
                      +|.|||| |..|.++|+.|....
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcc
Confidence            6899996 999999999999874

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.31  E-value=0.16  Score=31.17  Aligned_cols=30  Identities=20%  Similarity=0.486  Sum_probs=26.9

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      +|+|.| +|..|......|.++|++|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            577887 799999999999999999999975

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.27  E-value=0.12  Score=31.86  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=27.8

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .++|.| +|..|...+..|.+.|++|+.+++..
T Consensus         3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            356777 79999999999999999999999743

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.064  Score=32.34  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=25.0

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|-|+ +-.|.+.|..|++.|.+|++..++.
T Consensus        14 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          14 AIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             EEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455554 4569999999999999999998854

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.19  E-value=0.077  Score=31.89  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|+ +-.|.+.|..|++.|.+|++.+++.
T Consensus         9 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455564 4469999999999999999998854

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.057  Score=33.43  Aligned_cols=32  Identities=19%  Similarity=0.479  Sum_probs=26.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHC----CC-------cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA----GV-------DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~----g~-------~v~v~E~~~   33 (130)
                      .++|.|+|.+|..+|..+...    |.       ++.++|+..
T Consensus        27 kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          27 KILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred             EEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence            589999999999999887654    43       599998854

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.14  E-value=0.071  Score=32.09  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=24.8

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.|+ +-.|.+.|..|++.|.+|++.+++.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           9 ALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455564 3468999999999999999998854

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.16  Score=28.81  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=27.5

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .+++|||. ...|.-.|..|.+.|.+|+++...
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~   72 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK   72 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence            36899995 568999999999999999999764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.90  E-value=0.07  Score=30.18  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=24.8

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |+|.|+ |..|+.+...+...|.++.+..++
T Consensus        29 VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          29 VLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             EEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             EEEECCCCCcccccchhhccccccceeeecc
Confidence            667785 999999999888889999877553

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.062  Score=30.33  Aligned_cols=32  Identities=13%  Similarity=0.012  Sum_probs=24.4

Q ss_pred             cEEEEccC-HHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGG-ISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G-~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+|+|++ ..|+.+...+...|.+|++.++++
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~   63 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA   63 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             EEEEEccccccchHHHHHHHHhCCeEeecccch
Confidence            36788554 478888877777899999997754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=91.80  E-value=0.15  Score=28.72  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             CcEEEEccCH-HHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGI-SGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .+++|||.+. .|...|..|.+.|.+|++...
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~   69 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHR   69 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred             ceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence            3689999554 799999999999999999865

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=91.75  E-value=0.17  Score=31.45  Aligned_cols=30  Identities=23%  Similarity=0.172  Sum_probs=26.1

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .|+|.| +|..|...+..|.++|++|..+-|
T Consensus        13 ~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR   43 (342)
T d1y1pa1          13 LVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence            488888 788999999999999999987654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.70  E-value=0.16  Score=31.36  Aligned_cols=28  Identities=36%  Similarity=0.324  Sum_probs=25.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEE
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLY   29 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~   29 (130)
                      .|+|-|.|-.|..+|..|.+.|.+|+-+
T Consensus        38 tvaIqGfGnVG~~~A~~L~e~Gakvv~v   65 (293)
T d1hwxa1          38 TFAVQGFGNVGLHSMRYLHRFGAKCVAV   65 (293)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            5899999999999999999999998755

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=91.70  E-value=0.034  Score=34.77  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=23.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|.++++....-.....+|+++|-++.+
T Consensus        80 ~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~V  113 (312)
T d1uira_          80 RVLIVGGGEGATLREVLKHPTVEKAVMVDIDGEL  113 (312)
T ss_dssp             EEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHH
T ss_pred             eEEEeCCCchHHHHHHHhcCCcceEEEecCCHHH
Confidence            6899999987666544322235689999987543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.2  Score=30.99  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=27.2

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCC-CcEEEEecC
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAG-VDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g-~~v~v~E~~   32 (130)
                      ++|+|.| +|..|...+..|.+.| .+|.++++.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~   34 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4689999 6899999999999998 589998763

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=91.33  E-value=0.086  Score=32.80  Aligned_cols=32  Identities=16%  Similarity=0.357  Sum_probs=25.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHC----CC-------cEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA----GV-------DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~----g~-------~v~v~E~~~   33 (130)
                      .++|.|+|.+|+..|..+...    |.       ++.++|+..
T Consensus        27 kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~G   69 (308)
T d1o0sa1          27 KYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDG   69 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCC
Confidence            589999999999999888764    43       588998753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.24  E-value=0.14  Score=30.98  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=25.1

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      ++|.| ++-.|.+.|..|++.|.+|++..++.
T Consensus        21 ~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          21 ALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            56666 45568999999999999999988753

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.18  E-value=0.2  Score=31.05  Aligned_cols=30  Identities=23%  Similarity=0.190  Sum_probs=26.9

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      .++|.| +|..|...+.+|.+.|++|.++++
T Consensus        18 ~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            467777 799999999999999999999986

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.07  E-value=0.22  Score=31.30  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=26.3

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcE-EEEecC
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDV-VLYEKE   32 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v-~v~E~~   32 (130)
                      +.|+|.| +|..|...+..|.+.|+.+ +.++..
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4689998 7889999999999999974 556653

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.06  E-value=0.13  Score=30.75  Aligned_cols=28  Identities=36%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             EEEc-cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            4 AVIG-GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         4 ~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      +|-| ++-.|.+.|..|++.|++|++...
T Consensus         5 lITGas~GIG~a~a~~la~~Ga~V~i~~~   33 (244)
T d1edoa_           5 VVTGASRGIGKAIALSLGKAGCKVLVNYA   33 (244)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3445 344599999999999999988654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.03  E-value=0.17  Score=28.65  Aligned_cols=30  Identities=30%  Similarity=0.327  Sum_probs=26.4

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      +++||| +-+.|...|..|.++|..|++...
T Consensus        31 ~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~   61 (171)
T d1edza1          31 KCIVINRSEIVGRPLAALLANDGATVYSVDV   61 (171)
T ss_dssp             EEEEECCCTTTHHHHHHHHHTTSCEEEEECS
T ss_pred             EEEEECCccccHHHHHHHHHHCCCEEEEecc
Confidence            689999 557799999999999999998864

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.02  E-value=0.092  Score=29.65  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=20.4

Q ss_pred             cEEEEccCHHHHH--HHHHHHHC-C---CcEEEEecCC
Q 037740            2 QVAVIGGGISGLA--SAFVLAKA-G---VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~--~a~~l~~~-g---~~v~v~E~~~   33 (130)
                      +|+|||+|..|..  .+..+... .   -+++++|.++
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e   40 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE   40 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc
Confidence            6899999977643  33333332 2   3788888754

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.00  E-value=0.16  Score=30.43  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=24.2

Q ss_pred             cEEEE-ccC-HHHHHHHHHHHH---CCCcEEEEecCC
Q 037740            2 QVAVI-GGG-ISGLASAFVLAK---AGVDVVLYEKED   33 (130)
Q Consensus         2 dv~Ii-G~G-~~Gl~~a~~l~~---~g~~v~v~E~~~   33 (130)
                      +|+|| |++ -.|.+.|..|++   .|++|++..|+.
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            35666 543 458899999987   599999998864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.70  E-value=0.14  Score=30.72  Aligned_cols=29  Identities=24%  Similarity=0.231  Sum_probs=23.0

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEec
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ++|.|| +-.|...|..|++.|++|++..+
T Consensus         9 alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           9 ALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            456664 44699999999999999988644

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.21  Score=30.04  Aligned_cols=29  Identities=24%  Similarity=0.513  Sum_probs=24.7

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCC-cEEEEec
Q 037740            3 VAVIG-GGISGLASAFVLAKAGV-DVVLYEK   31 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~-~v~v~E~   31 (130)
                      |+|.| +|..|......|.+.|+ +|++++.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            56777 78899999999999996 7999874

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.51  E-value=0.27  Score=23.84  Aligned_cols=29  Identities=31%  Similarity=0.406  Sum_probs=21.6

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEec
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      |+|.|+ |-.|..+-..+...|.+|+..-+
T Consensus        35 vlI~gasGgVG~~aiQlak~~G~~Vi~~t~   64 (77)
T d1o8ca2          35 IVVTGASGGVGSTAVALLHKLGYQVVAVSG   64 (77)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEeCCCcHHHHHHHHHHHcCCeEEEEEC
Confidence            667665 77788777777777888887754

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.49  E-value=0.079  Score=31.82  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=25.2

Q ss_pred             EEEEccCH-HHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGI-SGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~-~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .+|-|++- .|.++|..|++.|++|++.+++.
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~   34 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESF   34 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45666544 69999999999999999988754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.39  E-value=0.21  Score=28.70  Aligned_cols=30  Identities=17%  Similarity=0.239  Sum_probs=24.9

Q ss_pred             cEEEEcc-CHHHHHHHHHHHHCCC--cEEEEec
Q 037740            2 QVAVIGG-GISGLASAFVLAKAGV--DVVLYEK   31 (130)
Q Consensus         2 dv~IiG~-G~~Gl~~a~~l~~~g~--~v~v~E~   31 (130)
                      +|+|.|| |..|.....+|.+.|+  +|+++-|
T Consensus         4 kIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r   36 (212)
T d2a35a1           4 RVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR   36 (212)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHCTTCCEEECCBS
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeC
Confidence            6899997 9999999999999997  4555444

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.29  E-value=0.15  Score=31.73  Aligned_cols=31  Identities=23%  Similarity=0.327  Sum_probs=25.4

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcE--EEEec
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDV--VLYEK   31 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v--~v~E~   31 (130)
                      +.|+|.| +|..|...+..|.+.|++|  +++++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            3689999 8999999999999998865  44554

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.11  E-value=0.54  Score=23.52  Aligned_cols=31  Identities=29%  Similarity=0.515  Sum_probs=26.6

Q ss_pred             CcEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ++|+|||+|-=--+.|..|.+...++.++-.
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pG   31 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPG   31 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecC
Confidence            4799999999999999999998888877743

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.07  E-value=0.057  Score=33.48  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=22.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~~   35 (130)
                      +|+|||+|-++.+.  .+.+.  ..+|+++|-++.+
T Consensus        92 ~VLiiGgG~G~~~r--~~l~~~~~~~i~~VEIDp~V  125 (295)
T d1inla_          92 KVLIIGGGDGGTLR--EVLKHDSVEKAILCEVDGLV  125 (295)
T ss_dssp             EEEEEECTTCHHHH--HHTTSTTCSEEEEEESCHHH
T ss_pred             eEEEecCCchHHHH--HHHhcCCCceEEEecCCHHH
Confidence            68999999886644  33443  4579999987543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.90  E-value=0.062  Score=32.91  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=23.0

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|-++.+....-.....+|+++|-++.+
T Consensus        78 ~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~V  111 (274)
T d1iy9a_          78 HVLVVGGGDGGVIREILKHPSVKKATLVDIDGKV  111 (274)
T ss_dssp             EEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHH
T ss_pred             eEEecCCCCcHHHHHHHhcCCcceEEEecCCHHH
Confidence            5899999987766544322224589999976543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.88  E-value=0.23  Score=29.52  Aligned_cols=31  Identities=29%  Similarity=0.420  Sum_probs=23.4

Q ss_pred             cE-EEEccC-HHHHHHHHHHHHCCCc-------EEEEecC
Q 037740            2 QV-AVIGGG-ISGLASAFVLAKAGVD-------VVLYEKE   32 (130)
Q Consensus         2 dv-~IiG~G-~~Gl~~a~~l~~~g~~-------v~v~E~~   32 (130)
                      .| +|-|++ -.|.+.|..|++.|.+       |++..++
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~   41 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   41 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC
Confidence            44 455754 4599999999999997       7777765

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=89.73  E-value=0.19  Score=30.39  Aligned_cols=28  Identities=32%  Similarity=0.306  Sum_probs=25.5

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEE
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLY   29 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~   29 (130)
                      +|+|-|.|-.|..+|..|.+.|.+|+.+
T Consensus        38 ~v~IQGfGnVG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          38 TVALAGFGNVAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            5899999999999999999999998744

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.32  Score=29.32  Aligned_cols=32  Identities=34%  Similarity=0.375  Sum_probs=24.9

Q ss_pred             cEEEE--ccCHHHHHHHHHHHHC-CCcEEEEecCC
Q 037740            2 QVAVI--GGGISGLASAFVLAKA-GVDVVLYEKED   33 (130)
Q Consensus         2 dv~Ii--G~G~~Gl~~a~~l~~~-g~~v~v~E~~~   33 (130)
                      .|+||  |++-.|+.+|..|++. |.+|++..|+.
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~   38 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV   38 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            57666  3455588999999886 89999998864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.44  E-value=0.11  Score=29.26  Aligned_cols=33  Identities=18%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             CcEEEEccCHHHHHHH--HHHHH-CC---CcEEEEecCC
Q 037740            1 MQVAVIGGGISGLASA--FVLAK-AG---VDVVLYEKED   33 (130)
Q Consensus         1 ~dv~IiG~G~~Gl~~a--~~l~~-~g---~~v~v~E~~~   33 (130)
                      ++|+|||||..|...+  ..+.+ ..   -+++++|.+.
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~   42 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK   42 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh
Confidence            3689999998765433  22332 23   3788998754

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=88.81  E-value=0.26  Score=30.43  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=26.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHC----C-------CcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA----G-------VDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~----g-------~~v~v~E~~~~   34 (130)
                      .++|.|+|.+|..+|..+...    |       .++.++|+...
T Consensus        27 kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          27 TVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             EEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            589999999999999888754    3       27889987543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=88.64  E-value=0.12  Score=29.19  Aligned_cols=29  Identities=31%  Similarity=0.063  Sum_probs=23.7

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+.||+|.+-.  |..|+++|++|+.+|.+
T Consensus        23 rvLd~GCG~G~~--a~~la~~G~~V~gvD~S   51 (201)
T d1pjza_          23 RVLVPLCGKSQD--MSWLSGQGYHVVGAELS   51 (201)
T ss_dssp             EEEETTTCCSHH--HHHHHHHCCEEEEEEEC
T ss_pred             EEEEecCcCCHH--HHHHHHcCCceEeeccc
Confidence            588999999864  44778889999999854

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.64  E-value=0.31  Score=28.98  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             EEEcc-CHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            4 AVIGG-GISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         4 ~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +|-|+ +-.|.+.|..|++.|.+|++..++.
T Consensus         5 lVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            45554 4469999999999999999999864

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.60  E-value=0.11  Score=31.84  Aligned_cols=33  Identities=30%  Similarity=0.514  Sum_probs=22.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL   35 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~~   35 (130)
                      +|+|||+|.++.+... +.....+|+++|-++.+
T Consensus        75 ~vLiiG~G~G~~~~~~-l~~~~~~v~~VEiD~~V  107 (276)
T d1mjfa_          75 RVLVIGGGDGGTVREV-LQHDVDEVIMVEIDEDV  107 (276)
T ss_dssp             EEEEEECTTSHHHHHH-TTSCCSEEEEEESCHHH
T ss_pred             eEEEecCCchHHHHHH-HHhCCceEEEecCCHHH
Confidence            6899999988666443 23334578999976543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.59  E-value=0.18  Score=27.76  Aligned_cols=29  Identities=31%  Similarity=0.363  Sum_probs=24.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      +|.+||-|.-|...|..|.+.|+.+ ++.+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~   30 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNR   30 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeC
Confidence            5789999999999999999999866 4544

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=88.44  E-value=0.5  Score=26.78  Aligned_cols=28  Identities=7%  Similarity=0.000  Sum_probs=21.1

Q ss_pred             cEEEE--ccCHHHHHHHHHHHHCCCcEEEE
Q 037740            2 QVAVI--GGGISGLASAFVLAKAGVDVVLY   29 (130)
Q Consensus         2 dv~Ii--G~G~~Gl~~a~~l~~~g~~v~v~   29 (130)
                      +|+|+  |+|..|+++...+...|.+|+..
T Consensus        31 ~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~   60 (189)
T d1gu7a2          31 DWFIQNGGTSAVGKYASQIGKLLNFNSISV   60 (189)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEEEeCCCchHHHHHHHHHhhcCCeEEEE
Confidence            58888  45777887777776779998765

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=88.26  E-value=0.34  Score=28.86  Aligned_cols=29  Identities=34%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCc-EEEEec
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVD-VVLYEK   31 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~-v~v~E~   31 (130)
                      ++|.| +|-.|...|..|++.|.+ ++++-|
T Consensus        12 ~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R   42 (259)
T d2fr1a1          12 VLVTGGTGGVGGQIARWLARRGAPHLLLVSR   42 (259)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            67888 466799999999999996 566654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.01  E-value=0.096  Score=32.69  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=22.4

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~   34 (130)
                      +|+|||+|-++.+...  .+.  ..+|+++|-++.
T Consensus       109 ~VLIiGgG~G~~~rel--lk~~~v~~v~~VEID~~  141 (312)
T d2b2ca1         109 RVLIIGGGDGGILREV--LKHESVEKVTMCEIDEM  141 (312)
T ss_dssp             EEEEESCTTSHHHHHH--TTCTTCCEEEEECSCHH
T ss_pred             eEEEeCCCchHHHHHH--HHcCCcceEEEEcccHH
Confidence            5899999988776544  343  358999997654

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.87  E-value=0.5  Score=29.70  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHH-CCCcEEEEec
Q 037740            1 MQVAVIG-GGISGLASAFVLAK-AGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~-~g~~v~v~E~   31 (130)
                      +.|+|.| +|..|.....+|.+ .|++|+++|+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            3688888 68999999988865 6999999984

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=0.28  Score=29.91  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +|+|.| +|..|...+..|.++|+.+++++..
T Consensus         4 kIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            588998 7999999999999999999887643

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.61  E-value=0.51  Score=27.55  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=27.7

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      .|+|.| .|..|.....+|.+.|.  +|.++.|++
T Consensus        16 ~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          16 SVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            488888 79999999999999885  899998854

>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Escherichia coli [TaxId: 562]

Probab=87.48  E-value=0.53  Score=25.26  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=26.0

Q ss_pred             CcEEEEccCHH---HHHHHHHHHHCCCcEEEEecC
Q 037740            1 MQVAVIGGGIS---GLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         1 ~dv~IiG~G~~---Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .|+.||+.|..   .+-||..|.+.|.++.|+...
T Consensus        23 ~dv~iiasGs~v~~aleAa~~L~~~gI~~~Vi~~~   57 (136)
T d2r8oa3          23 PELIFIATGSEVELAVAAYEKLTAEGVKARVVSMP   57 (136)
T ss_dssp             CSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEEeeccchHHHHHHHHHHHhcCCCceEeech
Confidence            38999999987   455777888889999999763

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.07  E-value=0.14  Score=31.51  Aligned_cols=31  Identities=32%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHC--CCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~--g~~v~v~E~~~~   34 (130)
                      +|+|||+|-++.+-..  .+.  ..+++++|=++.
T Consensus        81 ~vLiiGgG~G~~~~~~--l~~~~~~~v~~vEiD~~  113 (285)
T d2o07a1          81 KVLIIGGGDGGVLREV--VKHPSVESVVQCEIDED  113 (285)
T ss_dssp             EEEEEECTTSHHHHHH--TTCTTCCEEEEEESCHH
T ss_pred             eEEEeCCCchHHHHHH--HHcCCcceeeeccCCHH
Confidence            5899999987665443  343  568999987643

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.34  E-value=0.45  Score=26.76  Aligned_cols=30  Identities=23%  Similarity=0.185  Sum_probs=22.0

Q ss_pred             EEEEcc-CHHHHHHHHHHHHCCCcEEEEecC
Q 037740            3 VAVIGG-GISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         3 v~IiG~-G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |+|.|+ |..|+.+...+...|.+|..+.++
T Consensus        33 VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~   63 (182)
T d1v3va2          33 VLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS   63 (182)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCchhHHHHHHHHccCCEEEEeCCC
Confidence            677787 556777777767779999887654

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=86.20  E-value=0.51  Score=29.18  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=25.8

Q ss_pred             CcEEEEccCH-----HHHHHHHHHHHCCCcEEEEe
Q 037740            1 MQVAVIGGGI-----SGLASAFVLAKAGVDVVLYE   30 (130)
Q Consensus         1 ~dv~IiG~G~-----~Gl~~a~~l~~~g~~v~v~E   30 (130)
                      ++|+|.+.|.     -.++.|..|.++|++|+++-
T Consensus         1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~   35 (401)
T d1iira_           1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCA   35 (401)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence            4688888886     47899999999999999985

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.67  E-value=0.17  Score=31.11  Aligned_cols=30  Identities=30%  Similarity=0.525  Sum_probs=21.2

Q ss_pred             cEEEEccCHHHHHHHHHHHHC-C-CcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA-G-VDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~-g-~~v~v~E~~~   33 (130)
                      +|+|||+|-++.+-.  +.+. + .+++++|-++
T Consensus        83 ~VLiiGgG~G~~~r~--~l~~~~~~~i~~VEiD~  114 (290)
T d1xj5a_          83 KVLVIGGGDGGVLRE--VARHASIEQIDMCEIDK  114 (290)
T ss_dssp             EEEEETCSSSHHHHH--HTTCTTCCEEEEEESCH
T ss_pred             ceEEecCCchHHHHH--HHhcccceeeEEecCCH
Confidence            689999998776653  3443 3 4789998754

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.64  E-value=0.83  Score=24.47  Aligned_cols=31  Identities=32%  Similarity=0.339  Sum_probs=25.2

Q ss_pred             cEEEEccCHH---HHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGIS---GLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~---Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |+.||..|..   .+-||..|.+.|.++.|++..
T Consensus        17 dvtiis~G~~~~~al~aa~~L~~~gi~~~vid~~   50 (137)
T d1umdb2          17 DLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLR   50 (137)
T ss_dssp             SEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEEcchhhhhhhhhhhcccccCcceEEEeec
Confidence            7889998866   566777788889999999874

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.48  E-value=0.91  Score=24.12  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=24.8

Q ss_pred             cEEEEccCHH---HHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGIS---GLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~---Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |+.||..|..   .+-||-.|.+.|.++.|++..
T Consensus        11 dvtIis~G~~~~~al~Aa~~L~~~gi~~~vid~~   44 (132)
T d1w85b2          11 DITIIAYGAMVHESLKAAAELEKEGISAEVVDLR   44 (132)
T ss_dssp             SEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CEEEEEChHHHHHHHHHHHHHHhcCCCeEEEeee
Confidence            7889998866   455677777889999999864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.40  E-value=0.38  Score=28.74  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=22.1

Q ss_pred             EEEEc-cCHHHHH----HHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIG-GGISGLA----SAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG-~G~~Gl~----~a~~l~~~g~~v~v~E~~~~   34 (130)
                      |+|.| ||.+=.+    .|+.|++.|++|+++|-++.
T Consensus         4 Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            66888 4444333    35566778999999998653

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.37  E-value=1.1  Score=24.38  Aligned_cols=31  Identities=13%  Similarity=0.167  Sum_probs=25.7

Q ss_pred             CcEEEEccCHHH---HHHHHHHHHCCCcEEEEec
Q 037740            1 MQVAVIGGGISG---LASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         1 ~dv~IiG~G~~G---l~~a~~l~~~g~~v~v~E~   31 (130)
                      .|+.||++|.--   +-||..|.+.|.++.|+.-
T Consensus        21 pdvtiiAsGsev~~AleAa~~L~~~GI~v~Vvs~   54 (146)
T d1gpua3          21 PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSL   54 (146)
T ss_dssp             CSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCEEEEEeCHHHHHHHHHHHHHHhhccCccEEEe
Confidence            489999999863   6677788888999999976

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=85.03  E-value=0.54  Score=29.08  Aligned_cols=30  Identities=30%  Similarity=0.312  Sum_probs=25.4

Q ss_pred             CcEEEEccCHH-----HHHHHHHHHHCCCcEEEEe
Q 037740            1 MQVAVIGGGIS-----GLASAFVLAKAGVDVVLYE   30 (130)
Q Consensus         1 ~dv~IiG~G~~-----Gl~~a~~l~~~g~~v~v~E   30 (130)
                      ++|+|.++|..     -+..|..|+++|++|+++-
T Consensus         1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~   35 (391)
T d1pn3a_           1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCL   35 (391)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEEE
Confidence            47888888874     6888999999999999984

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.78  E-value=0.4  Score=28.07  Aligned_cols=32  Identities=19%  Similarity=0.200  Sum_probs=21.9

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~~   34 (130)
                      .|+-||+|.+-+++ ....-.|-+|+.+|.++.
T Consensus        81 ~VLeIGsGsGY~ta-ila~l~g~~V~~ie~~~~  112 (215)
T d1jg1a_          81 NILEVGTGSGWNAA-LISEIVKTDVYTIERIPE  112 (215)
T ss_dssp             CEEEECCTTSHHHH-HHHHHHCSCEEEEESCHH
T ss_pred             eEEEecCCCChhHH-HHHHhhCceeEEEeccHH
Confidence            48899999766554 333334777999998653

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.50  E-value=0.74  Score=28.52  Aligned_cols=28  Identities=25%  Similarity=0.170  Sum_probs=23.0

Q ss_pred             EEEccC---HHHHHHHHHHHHCCCcEEEEec
Q 037740            4 AVIGGG---ISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         4 ~IiG~G---~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      +|-|+|   -.|.+.|..|++.|.+|.+..+
T Consensus         6 lITGaa~s~GIG~aiA~~la~~GA~V~i~~~   36 (329)
T d1uh5a_           6 FIAGIGDTNGYGWGIAKELSKRNVKIIFGIW   36 (329)
T ss_dssp             EEECCSSSSSHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEeCCCCCChHHHHHHHHHHHcCCEEEEEeC
Confidence            466755   5899999999999999998643

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.32  E-value=0.88  Score=26.94  Aligned_cols=28  Identities=36%  Similarity=0.433  Sum_probs=24.4

Q ss_pred             cEEEEccCHHHHHHHHHHHH-CCCcEEEE
Q 037740            2 QVAVIGGGISGLASAFVLAK-AGVDVVLY   29 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~   29 (130)
                      .|+|-|.|-.|..+|..|.+ .|.+++.+
T Consensus        33 ~vaIqG~GnVG~~~a~~L~~e~Ga~vv~v   61 (234)
T d1b26a1          33 TVAVQGFGNVGQFAALLISQELGSKVVAV   61 (234)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcCCceEEe
Confidence            58999999999999999975 59988755

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.15  E-value=1  Score=26.72  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=23.8

Q ss_pred             cEEEEccCHHHHHHHHHHHH-CCCcEEEE
Q 037740            2 QVAVIGGGISGLASAFVLAK-AGVDVVLY   29 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~-~g~~v~v~   29 (130)
                      .|+|-|.|-.|..+|..|.+ .|.+|+-+
T Consensus        34 ~v~IqGfGnVG~~~a~~L~~~~G~kvv~v   62 (239)
T d1gtma1          34 TIAIQGYGNAGYYLAKIMSEDFGMKVVAV   62 (239)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcCcceeec
Confidence            58999999999999999976 58887644

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=84.04  E-value=0.59  Score=27.47  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=22.4

Q ss_pred             cCHHHHHHHHHHHHCCCcEEEEec
Q 037740            8 GGISGLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         8 ~G~~Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      +|-.|.+.|..+.++|++|+++-.
T Consensus        31 SGk~G~aiA~~~~~~Ga~V~li~g   54 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGANVTLVSG   54 (223)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHcCCchhhhhc
Confidence            788999999999999999999965

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.94  E-value=2  Score=23.16  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=27.3

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHC---CCcEEEEecCCCCCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKA---GVDVVLYEKEDSLGG   37 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~---g~~v~v~E~~~~~gg   37 (130)
                      ..|.|||+ |.+|.-.-..|.++   ..++..+-.....|-
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk   43 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ   43 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc
Confidence            36899996 99999999999865   447777755444443

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=83.84  E-value=0.34  Score=28.97  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=23.5

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCCcEEEE
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGVDVVLY   29 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~~v~v~   29 (130)
                      ++|+|.|| |..|......|.+.|..|.+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~   30 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALD   30 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence            46899995 999999999999888755443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.71  E-value=0.59  Score=28.22  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=22.2

Q ss_pred             EEEEc-cCHHHHH----HHHHHHHCCCcEEEEecCCC
Q 037740            3 VAVIG-GGISGLA----SAFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~IiG-~G~~Gl~----~a~~l~~~g~~v~v~E~~~~   34 (130)
                      |+|.| ||.+-.+    .|+.|++.|++|+++|-++.
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            56667 5544333    35667778999999998754

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.40  E-value=0.81  Score=25.99  Aligned_cols=31  Identities=19%  Similarity=0.090  Sum_probs=22.4

Q ss_pred             cEEEEccC-H-----HHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGG-I-----SGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G-~-----~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      .+.|.|.| -     .-+..|..|+++|++|.+++.+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            45788876 2     2345567778889999999864

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=83.36  E-value=0.18  Score=27.56  Aligned_cols=31  Identities=10%  Similarity=-0.082  Sum_probs=21.8

Q ss_pred             EEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      +-+||.|--|.+.|..|.+.+..+.|+.|+.
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~   32 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSI   32 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSH
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            3589999999999988866555556887754

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=83.27  E-value=0.25  Score=30.31  Aligned_cols=26  Identities=23%  Similarity=0.221  Sum_probs=22.2

Q ss_pred             CcEEEEc-cCHHHHHHHHHHHHCCCcE
Q 037740            1 MQVAVIG-GGISGLASAFVLAKAGVDV   26 (130)
Q Consensus         1 ~dv~IiG-~G~~Gl~~a~~l~~~g~~v   26 (130)
                      +.|+|.| +|..|...+..|.+.|+.|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v   27 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPD   27 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence            4688998 7999999999999998743

>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=83.13  E-value=1.1  Score=23.98  Aligned_cols=30  Identities=27%  Similarity=0.277  Sum_probs=25.9

Q ss_pred             cEEEEccCHH---HHHHHHHHHHCCCcEEEEec
Q 037740            2 QVAVIGGGIS---GLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         2 dv~IiG~G~~---Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ||.|++.|.-   .+-||..|.+.|.++.|+..
T Consensus        25 dv~liasGs~v~~al~Aa~~L~~~gi~~~Vvs~   57 (136)
T d1itza3          25 DLIVMGTGSELEIAAKAADELRKEGKTVRVVSF   57 (136)
T ss_dssp             SEEEEECGGGHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEEecHHHHHHHHHHHHHHhcccccccccc
Confidence            7999999987   57888899999999999854

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=83.01  E-value=0.96  Score=26.62  Aligned_cols=23  Identities=35%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGV   24 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~   24 (130)
                      .|+|||-|+-|-+-|+.|...|.
T Consensus        46 kIaViGYGsQG~AhAlNLrDSG~   68 (226)
T d1qmga2          46 QIGVIGWGSQAPAQAQNLKDSLT   68 (226)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccHHHHHHHhChhhcc
Confidence            58999999999999999999653

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.52  E-value=1.2  Score=23.92  Aligned_cols=31  Identities=26%  Similarity=0.383  Sum_probs=24.7

Q ss_pred             cEEEEccCHH---HHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIGGGIS---GLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG~G~~---Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |+.||..|..   .+-||-.|.+.|.++.|++..
T Consensus        15 ditiis~G~~~~~al~aa~~L~~~gi~~~vid~~   48 (138)
T d2ozlb2          15 HITVVSHSRPVGHCLEAAAVLSKEGVECEVINMR   48 (138)
T ss_dssp             SEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CEEEEEccHHHHhHHHHhhhhcccCcceEEEEec
Confidence            7899998864   555677787789999999864

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.40  E-value=0.96  Score=24.76  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=25.8

Q ss_pred             CcEEEEcc-CHHHHHHHHHHHHCCC---cEEEEecCCCCC
Q 037740            1 MQVAVIGG-GISGLASAFVLAKAGV---DVVLYEKEDSLG   36 (130)
Q Consensus         1 ~dv~IiG~-G~~Gl~~a~~l~~~g~---~v~v~E~~~~~g   36 (130)
                      |.|.|||+ |.+|.-.-..|.++.+   ++..+-.+...|
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G   41 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG   41 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc
Confidence            57999996 9999999888888754   444554433333

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.21  E-value=0.83  Score=26.54  Aligned_cols=29  Identities=28%  Similarity=0.307  Sum_probs=23.2

Q ss_pred             EEEEccCHH---HHHHHHHHHHCCCcEEEEec
Q 037740            3 VAVIGGGIS---GLASAFVLAKAGVDVVLYEK   31 (130)
Q Consensus         3 v~IiG~G~~---Gl~~a~~l~~~g~~v~v~E~   31 (130)
                      ++++|.|--   |+.+|.+|...|++|.++-.
T Consensus        44 lvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~   75 (211)
T d2ax3a2          44 LVLCGGGNNGGDGFVVARNLLGVVKDVLVVFL   75 (211)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             EEEECCCCCchhHHHHHHHHHhcCCeeEEEec
Confidence            356676653   89999999999999998854

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=0.36  Score=28.22  Aligned_cols=30  Identities=23%  Similarity=0.021  Sum_probs=24.1

Q ss_pred             cEEEEccCHHHHHHHHHHHHCCCcEEEEecCC
Q 037740            2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKED   33 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~g~~v~v~E~~~   33 (130)
                      .|+.+|+|.+-.  +..|++.|++|+-+|-++
T Consensus        48 rvLd~GCG~G~~--a~~LA~~G~~V~gvD~S~   77 (229)
T d2bzga1          48 RVFFPLCGKAVE--MKWFADRGHSVVGVEISE   77 (229)
T ss_dssp             EEEETTCTTCTH--HHHHHHTTCEEEEECSCH
T ss_pred             EEEEeCCCCcHH--HHHHHhCCCcEEEEeCCH
Confidence            588999998744  667789999999998643

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=81.67  E-value=1  Score=24.99  Aligned_cols=36  Identities=28%  Similarity=0.519  Sum_probs=25.8

Q ss_pred             cEEEEccCHHHHHHHHHHHHC-CCcEE-EEecCCCCCC
Q 037740            2 QVAVIGGGISGLASAFVLAKA-GVDVV-LYEKEDSLGG   37 (130)
Q Consensus         2 dv~IiG~G~~Gl~~a~~l~~~-g~~v~-v~E~~~~~gg   37 (130)
                      +|.|||.|..|...+..+.+. +++++ |+++++....
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~   42 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT   42 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS
T ss_pred             eEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc
Confidence            579999999998777766654 66654 7777655443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=81.50  E-value=1.2  Score=25.06  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=23.2

Q ss_pred             EEEEc-cCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            3 VAVIG-GGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         3 v~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      |+|.| +|..|..+-..+...|.+|+.+-++
T Consensus        35 vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~   65 (177)
T d1o89a2          35 IVVTGASGGVGSTAVALLHKLGYQVVAVSGR   65 (177)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEEccccchHHHHHHHHHcCCCeEEEecc
Confidence            56655 5888988888888889999877654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.32  E-value=0.96  Score=26.95  Aligned_cols=32  Identities=31%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             EEEE-ccCHHHHHH-----HHHHHHCCCcEEEEecCCC
Q 037740            3 VAVI-GGGISGLAS-----AFVLAKAGVDVVLYEKEDS   34 (130)
Q Consensus         3 v~Ii-G~G~~Gl~~-----a~~l~~~g~~v~v~E~~~~   34 (130)
                      |+|+ |=|-.|-++     |..|++.|++|+++|-++.
T Consensus        22 iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          22 LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4444 544444443     7777888999999998754

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=81.20  E-value=1.9  Score=23.84  Aligned_cols=31  Identities=35%  Similarity=0.357  Sum_probs=24.8

Q ss_pred             cEEEEc-cCHHHHHHHHHHHHCCCcEEEEecC
Q 037740            2 QVAVIG-GGISGLASAFVLAKAGVDVVLYEKE   32 (130)
Q Consensus         2 dv~IiG-~G~~Gl~~a~~l~~~g~~v~v~E~~   32 (130)
                      +|+|-| +|..|..+...+...|.+|+..-++
T Consensus        26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s   57 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGN   57 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             EEEEeCCcchHHHHHHHHHHHcCCceEEEecC
Confidence            488888 5888988888877789999877654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.87  E-value=0.56  Score=27.77  Aligned_cols=31  Identities=23%  Similarity=0.241  Sum_probs=21.8

Q ss_pred             EEEEccC-HHHHHHHHHHHHCCC--cEEEEecCC
Q 037740            3 VAVIGGG-ISGLASAFVLAKAGV--DVVLYEKED   33 (130)
Q Consensus         3 v~IiG~G-~~Gl~~a~~l~~~g~--~v~v~E~~~   33 (130)
                      |+|-||. -.|.+.|..|++.|.  .|++..|+.
T Consensus         6 ilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~   39 (250)
T d1yo6a1           6 VVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             EEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            5566744 448899999999996  455556543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.71  E-value=0.64  Score=27.47  Aligned_cols=33  Identities=12%  Similarity=0.103  Sum_probs=24.8

Q ss_pred             cEEEEccC-HHHHHHHHHHH---HCCCcEEEEecCCC
Q 037740            2 QVAVIGGG-ISGLASAFVLA---KAGVDVVLYEKEDS   34 (130)
Q Consensus         2 dv~IiG~G-~~Gl~~a~~l~---~~g~~v~v~E~~~~   34 (130)
                      .|+|-|+. -.|+++|..|.   +.|++|.+..|+..
T Consensus         4 tilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~   40 (248)
T d1snya_           4 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNRE   40 (248)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            47788864 45888887775   46999999988654

>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Escherichia coli [TaxId: 562]

Probab=80.51  E-value=0.9  Score=24.22  Aligned_cols=20  Identities=45%  Similarity=0.622  Sum_probs=16.7

Q ss_pred             EEEEccCHHHHHHHHHHHHC
Q 037740            3 VAVIGGGISGLASAFVLAKA   22 (130)
Q Consensus         3 v~IiG~G~~Gl~~a~~l~~~   22 (130)
                      +-|-|||++|.+-|..++-.
T Consensus        61 v~V~GGG~sgQa~Air~aIa   80 (126)
T d2gy9i1          61 ITVKGGGISGQAGAIRHGIT   80 (126)
T ss_dssp             EEEESSCHHHHHHHHHHHHH
T ss_pred             EEEecCCchhHHHHHHHHHH
Confidence            46899999999999887743

>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein YNL200c (YNU0 YEAST)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.48  E-value=1.6  Score=25.87  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             EEEccCHH---HHHHHHHHHHCCCcEEEE
Q 037740            4 AVIGGGIS---GLASAFVLAKAGVDVVLY   29 (130)
Q Consensus         4 ~IiG~G~~---Gl~~a~~l~~~g~~v~v~   29 (130)
                      +++|.|--   |+++|.+|.+.|++|.++
T Consensus        60 il~G~GNNGGDGl~~Ar~L~~~G~~V~v~   88 (243)
T d1jzta_          60 VIAGPGNNGGDGLVCARHLKLFGYNPVVF   88 (243)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEECCCCccHHHHHHHHHHHhcCCeeEEE
Confidence            34564443   899999999999999887