Citrus Sinensis ID: 037761

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750---
MHKLLLLKQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTGRVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGGLFIIVGIATLLALLISERYIWQKPVSLVNKYLTSQKSPSNE
cEEEEEEEcccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHccccccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHHcccEEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEEccEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccEEEcccccccccccEEEEEEccHHHHHHHHccccccEEEcEEEcccccccccccccHHHHHHHHHcccccEEEEcEEEEEEcEEEEEEccccccccEEEEEEccccccccEEEEEccccHHHHHHHHHHcccEEHHHHHHHHHHHHHcccccccccEEEEEccccccccHHHHHHccccEEEEccccHHHHHHHHcccccccccccccHHHHHHHHccccccccEEEEEEccHHHHHHHHHccccEEEEccccccccEEEEEccccccccHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccc
ccEEEEEEEcccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccEEEEEEcccHHHcccccHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccEccccEEEEEcccccccccEEEEEEEcccEEEEEEccccccccccccccccccccEEEcccccccccccEcccEEEEEEccccccEEEEEEcccccccccEEEEHHHHHHHHHHHccccccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEEEEEEEEEcEEEEEcccccccccEEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccEcccccHHHHHHHHHccccHHHccccccHHHHHHHHHccccccHHHEHHcHHHHHHHHHHHccccEEEEcccEcccccEEEcccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
MHKLLLLKQFKDCGKLILAVDLLKKFQVQaiigpqipaaaPFLVELgekaqvpiisffetspalsptehpffirvtqnDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELqendirishmskiptsaedFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSnslnvldsevidsmegvlgvrshlpkskelglfdrrwksklhsmkpnssvteinisglWAYDTIFALAKAVEKilspinpsivnpsnpsesttdfgslgfsRIGHILCNQILNtqfkglsgefhlvngqlesSVFEIVNVIGTGRVVGywtsekgltqtldltskndlkqiiwpgdstiaptgwaipslvvgtpvrlgfpqflsvredgdlnkttyTGFCMEIFNATLEIVEEKlgmkihpqlvpyedengemagtYDELLYQIKLKKfdavvgdisivasrtdyveftlpysesgvtmlvpvkrdnrhnmwiFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRteshfvgfqsgsfVEDFLVKQLNfsrnqtrplsnfgEYKEAlsngsrkggvsaifEEIPYIKVFLKKYSskyttagpiyrtdglgfafakdsplvshFSQAILLVRENQTRMDRIEkkyfgenvmtptlarsissessslraynfGGLFIIVGIATLLALLISERYIWQKPVSLVNKYltsqkspsne
MHKLLLLKQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMskiptsaedFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLgvrshlpkskelglFDRRWksklhsmkpnssvteiniSGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTGRVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTdyveftlpysesgvtMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFsrnqtrplsnfGEYKEALsngsrkggvsaIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEkkyfgenvmtptlARSISSESSSLRAYNFGGLFIIVGIATLLALLISERYIWQKPVSLVNkyltsqkspsne
MHKLLLLKQFKDCGKLILAVDLLKKFqvqaiigpqipaaapFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKilspinpsivnpsnpsESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTGRVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARsissesssLRAYNFGGLFIIVGIATLLALLISERYIWQKPVSLVNKYLTSQKSPSNE
***LLLLKQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHM***************LSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWK**********SVTEINISGLWAYDTIFALAKAVEKILSPIN***************FGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTGRVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSR**********************GGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTL**********LRAYNFGGLFIIVGIATLLALLISERYIWQKPVSLVNKYL*********
MHKLLLLKQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLH*******VTEINISGLWAYDTIFALAKAVEKILSP****************DFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTGRVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRP*************GSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFG***********************FGGLFIIVGIATLLALLISERYIWQKPVS***************
MHKLLLLKQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVN*********DFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTGRVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGGLFIIVGIATLLALLISERYIWQKPVSLVNKY**********
MHKLLLLKQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPS**********TTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTGRVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENV***************LRAYNFGGLFIIVGIATLLALLISERYIWQKPVSL**************
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MHKLLLLKQFKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTGRVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGGLFIIVGIATLLALLISERYIWQKPVSLVNKYLTSQKSPSNE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query753 2.2.26 [Sep-21-2011]
Q8LGN0952 Glutamate receptor 2.7 OS yes no 0.905 0.716 0.406 1e-146
Q9C5V5947 Glutamate receptor 2.8 OS no no 0.924 0.734 0.396 1e-143
O81078940 Glutamate receptor 2.9 OS no no 0.907 0.726 0.396 1e-142
Q9LFN8967 Glutamate receptor 2.6 OS no no 0.933 0.726 0.369 1e-142
Q9LFN5918 Glutamate receptor 2.5 OS no no 0.925 0.759 0.374 1e-141
Q9SHV1920 Glutamate receptor 2.2 OS no no 0.872 0.714 0.374 1e-137
Q9SHV2895 Glutamate receptor 2.3 OS no no 0.918 0.773 0.359 1e-136
O04660901 Glutamate receptor 2.1 OS no no 0.912 0.762 0.353 1e-129
O81776896 Glutamate receptor 2.4 OS no no 0.863 0.725 0.378 1e-127
Q9C8E7933 Glutamate receptor 3.3 OS no no 0.929 0.750 0.309 1e-104
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3 Back     alignment and function desciption
 Score =  520 bits (1338), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 314/772 (40%), Positives = 446/772 (57%), Gaps = 90/772 (11%)

Query: 19  AVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQN 78
           A+DL+K  QV AIIGP+    A F++ L +K+QVP I+F  T P L+    P+F+R T +
Sbjct: 95  ALDLIKNEQVSAIIGPRTSMQAEFMIRLADKSQVPTITFSATCPLLTSINSPYFVRATLD 154

Query: 79  DSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAED 138
           DS QVKAI+A++++F W  VV +Y D  +G G +  L D LQ+    + +   IP  A D
Sbjct: 155 DSSQVKAIAAIVKSFGWRNVVAIYVDNEFGEGILPLLTDALQDVQAFVVNRCLIPQEAND 214

Query: 139 FQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLD 198
            QI KEL KL TMQTRVF+VHM   L  R F    + GMM +GY W++T  + N L   +
Sbjct: 215 DQILKELYKLMTMQTRVFVVHMPPTLGFRFFQKAREIGMMEEGYVWLLTDGVMNLLKSNE 274

Query: 199 -SEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFA 257
               +++M+GVLGVRSH+PKSK+L  F  RW+ K+   K N    E+NI  L AYD+I A
Sbjct: 275 RGSSLENMQGVLGVRSHIPKSKKLKNFRLRWE-KMFPKKGNDE--EMNIFALRAYDSITA 331

Query: 258 LAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLV 317
           LA AVEK  +  +    +P     + T+ G+LG SR G  L   + N +F GL+GEF L+
Sbjct: 332 LAMAVEKT-NIKSLRYDHPIASGNNKTNLGTLGVSRYGPSLLKALSNVRFNGLAGEFELI 390

Query: 318 NGQLESSVFEIVNVIGT-GRVVGYWTSEKGLTQTLDLTSKND-------LKQIIWPGDST 369
           NGQLESSVF+++N+IG+  R++G W    G+   ++  SKN        L  +IWPG S 
Sbjct: 391 NGQLESSVFDVINIIGSEERIIGLWRPSNGI---VNAKSKNTTSVLGERLGPVIWPGKSK 447

Query: 370 IAPTGWAIPS----LVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEK 425
             P GW IP+    L VG PV+ GF +F+  + D   N  T TG+C+EIF A L    +K
Sbjct: 448 DVPKGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPISNAMTPTGYCIEIFEAVL----KK 503

Query: 426 LGMKIHPQLVPY--EDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPY 483
           L   + P+ + +   DEN      YDE++YQ+    +DAVVGD++IVA+R+ YV+FTLPY
Sbjct: 504 LPYSVIPKYIAFLSPDEN------YDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPY 557

Query: 484 SESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLAL-------------------------- 517
           +ESGV+M+VP+K DN+ N W+FL+PW+ DLW+                            
Sbjct: 558 TESGVSMMVPLK-DNK-NTWVFLRPWSLDLWVTTACFFVFIGFIVWILEHRVNTDFRGPP 615

Query: 518 ----------------------VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLE 555
                                 VV + ++FV+++W ++  +L+QSYTA+L+S  TV  L+
Sbjct: 616 HHQIGTSFWFAFSTMNFAHREKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQ 675

Query: 556 PTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPLSNFGEYKEALSNGSRKGG 615
           PT  + K L   +  +G+Q G+FV + L+K   F  +Q +P  +  E  E  SNG+    
Sbjct: 676 PTVTNWKDLIKFNKNIGYQRGTFVRE-LLKSQGFDESQLKPFGSAVECDELFSNGT---- 730

Query: 616 VSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQT 675
           ++A F+E+ YIKV L + SSKYT   P ++T G GF F K SPL    S+AIL V + + 
Sbjct: 731 ITASFDEVAYIKVILSQNSSKYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGE- 789

Query: 676 RMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGGLFIIVGIATLLALLI 727
            M  IE K+F +    P L  + S  S+ L   +F GLF+I GIA+ LALLI
Sbjct: 790 EMQHIENKWFKKPNNCPDL--NTSLSSNHLSLSSFWGLFLIAGIASFLALLI 839
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2 Back     alignment and function description
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFN8|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2 Back     alignment and function description
>sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1 Back     alignment and function description
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2 Back     alignment and function description
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8E7|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query753
449457227 859 PREDICTED: glutamate receptor 2.7-like [ 0.960 0.841 0.452 0.0
449524822829 PREDICTED: glutamate receptor 2.2-like [ 0.946 0.860 0.455 0.0
224142293853 glutamate-gated kainate-type ion channel 0.916 0.808 0.469 0.0
225464317 926 PREDICTED: glutamate receptor 2.7-like [ 0.936 0.761 0.456 1e-176
296083773 1727 unnamed protein product [Vitis vinifera] 0.949 0.414 0.439 1e-175
359476442 920 PREDICTED: glutamate receptor 2.7-like [ 0.949 0.777 0.439 1e-175
296083758 919 unnamed protein product [Vitis vinifera] 0.969 0.794 0.437 1e-174
225464311 916 PREDICTED: glutamate receptor 2.7-like [ 0.969 0.796 0.436 1e-174
224142049 883 glutamate-gated kainate-type ion channel 0.928 0.791 0.435 1e-172
359476446 983 PREDICTED: glutamate receptor 2.8-like [ 0.937 0.718 0.437 1e-172
>gi|449457227|ref|XP_004146350.1| PREDICTED: glutamate receptor 2.7-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/806 (45%), Positives = 503/806 (62%), Gaps = 83/806 (10%)

Query: 6   LLKQFKDCGKLILA----VDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETS 61
           L+  F+D   ++ A    VDL+K  +V AIIGP+    A F+++LGEKA VPI+SF  TS
Sbjct: 17  LVLHFRDSQDMVAATSAVVDLVKNEKVHAIIGPESSGEATFMIKLGEKAHVPIVSFSATS 76

Query: 62  PALSPTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQE 121
            ++SP+  PFF+R  QNDS QV+AI+ ++Q F WH++VL+YEDT YG G I FL D LQE
Sbjct: 77  LSISPSHSPFFVRTAQNDSSQVQAITTIVQGFGWHDLVLIYEDTEYGRGLIPFLTDALQE 136

Query: 122 NDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKG 181
           ++IR+S    IPTS + ++IS+ L K+   QTRVF+VH+ +   S LF LV K GMM++G
Sbjct: 137 SNIRVSFKYAIPTSMDPYEISQHLHKMKKRQTRVFLVHVTSPFGSALFPLVEKAGMMTEG 196

Query: 182 YTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSV 241
           Y W++T  LSN L+ +D  VI SMEGVLG+R H P S+ L  F RRWK          S 
Sbjct: 197 YAWLLTNTLSNCLDAMDPSVIKSMEGVLGIRPHFPASEALENFKRRWK---------WSA 247

Query: 242 TEINISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPS-ESTTDFGSLGFSRIGHILCN 300
            E+NI GLWAYDTI+ALA A E+I    N   +       E  TD  +L  S +G +L  
Sbjct: 248 PELNIYGLWAYDTIWALAMAAERIGDVSNLGFLKGRGSDVEGKTDIANLRVSEVGPMLLK 307

Query: 301 QILNTQFKGLSGEFHLVNGQLESSVFEIVNVIGTG-RVVGYWTSEKGLTQTLD------- 352
           ++LN +FKGLSG+FHLVNG L+ S FEI N+IG   R++GYW  E+G+ Q +        
Sbjct: 308 EMLNIKFKGLSGDFHLVNGHLQPSAFEIFNMIGRAERLIGYWNPEEGICQNIANKKPNEK 367

Query: 353 -LTSKNDLKQIIWPGDSTIAPTGWAIPS----LVVGTPVRLGFPQFLSVREDGDLNKTTY 407
             TS + LK+IIWPGDS  AP GWA+P+      +G P + GF +FL V  +    +  +
Sbjct: 368 YSTSVSKLKKIIWPGDSITAPRGWAVPADGEKFRIGVPKKQGFNEFLDVTRNPQTGELNF 427

Query: 408 TGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGEMAGTYDELLYQIKLK---KFDAVV 464
           TGFC+++F A    V + L   +  +   ++D+ G+ +  YD+LL+Q+  +   KFDAVV
Sbjct: 428 TGFCIDVFRA----VADALPFPLPYEFELFKDDAGDNSVIYDDLLHQLAEREKNKFDAVV 483

Query: 465 GDISIVASRTDYVEFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLA-------- 516
           GDI+IVASR + V+F+LPY++SGVTMLVP+K +   +MW+FLKP + DLWL         
Sbjct: 484 GDITIVASRANLVDFSLPYTDSGVTMLVPIKHNMHRSMWVFLKPLSLDLWLTTIAASIAT 543

Query: 517 ---------------------------------------LVVKDCSKFVLVIWLWLAFIL 537
                                                  +V    S+FVLV+WL+LAF+L
Sbjct: 544 GIVLLILEQNARRESLQPLELLCLILWFPFSSLVLPERQIVTNTRSRFVLVVWLFLAFVL 603

Query: 538 MQSYTASLSSILTVDQLEPTFADLKKLRTESHFVGFQSGSFVEDFLVKQLNFSRNQTRPL 597
           MQSYTASLSSIL  DQL+P +  + +L ++ ++VG+Q GSF +  L++QL F+ ++ +  
Sbjct: 604 MQSYTASLSSILMSDQLQPKYFSVNELISKGYYVGYQEGSFTKSMLIEQLKFNESKLKSY 663

Query: 598 SNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFAFAKDS 657
           +N  E+ +ALS GS+ GGV+AIF+EIPY+KVFL KY S +  AGPIYRTDG GFAF  +S
Sbjct: 664 ANVEEFHKALSKGSQNGGVAAIFDEIPYLKVFLTKYGSDFIRAGPIYRTDGFGFAFPLNS 723

Query: 658 PLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGGLFIIV 717
            LV + S+AIL V E + +M  IE KYFG        + + SS+   L   +FGGLFII 
Sbjct: 724 RLVPYVSRAILNVTEGE-KMVAIETKYFGAGNQN-QDSSNSSSDGPCLEVSSFGGLFIIT 781

Query: 718 GIATLLALLISERYIWQKPVSLVNKY 743
           GIA LLAL+ S+ +IW+KP S+   Y
Sbjct: 782 GIAFLLALIDSQTFIWRKPASVAKTY 807

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449524822|ref|XP_004169420.1| PREDICTED: glutamate receptor 2.2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224142293|ref|XP_002324493.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865927|gb|EEF03058.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225464317|ref|XP_002270975.1| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083773|emb|CBI23990.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476442|ref|XP_002271013.2| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083758|emb|CBI23975.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464311|ref|XP_002269290.1| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142049|ref|XP_002324371.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865805|gb|EEF02936.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476446|ref|XP_003631841.1| PREDICTED: glutamate receptor 2.8-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query753
TAIR|locus:2066107 952 GLR2.7 "glutamate receptor 2.7 0.656 0.518 0.421 9.4e-137
TAIR|locus:2066148 940 GLR2.9 "glutamate receptor 2.9 0.656 0.525 0.411 1.1e-135
TAIR|locus:2066086 947 GLR2.8 "glutamate receptor 2.8 0.658 0.523 0.409 2e-134
TAIR|locus:2047256920 GLR2.2 "glutamate receptor 2.2 0.654 0.535 0.403 1.3e-126
TAIR|locus:2047251895 GLR2.3 "glutamate receptor 2.3 0.665 0.559 0.381 2.1e-124
TAIR|locus:2181196901 GLR2.1 "glutamate receptor 2.1 0.621 0.519 0.385 2.2e-120
TAIR|locus:2207165 959 GLR3.4 "AT1G05200" [Arabidopsi 0.601 0.472 0.312 3.9e-94
TAIR|locus:2206095 933 GLR3.3 "glutamate receptor 3.3 0.626 0.505 0.292 2.6e-93
TAIR|locus:2081805903 GLR3.6 "glutamate receptor 3.6 0.594 0.496 0.319 8.7e-91
TAIR|locus:2062586 921 GLR5 "glutamate receptor 5" [A 0.613 0.501 0.288 3.4e-82
TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 995 (355.3 bits), Expect = 9.4e-137, Sum P(2) = 9.4e-137
 Identities = 222/527 (42%), Positives = 313/527 (59%)

Query:    19 AVDLLKKFXXXXXXXXXXXXXXXFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQN 78
             A+DL+K                 F++ L +K+QVP I+F  T P L+    P+F+R T +
Sbjct:    95 ALDLIKNEQVSAIIGPRTSMQAEFMIRLADKSQVPTITFSATCPLLTSINSPYFVRATLD 154

Query:    79 DSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAED 138
             DS QVKAI+A++++F W  VV +Y D  +G G +  L D LQ+    + +   IP  A D
Sbjct:   155 DSSQVKAIAAIVKSFGWRNVVAIYVDNEFGEGILPLLTDALQDVQAFVVNRCLIPQEAND 214

Query:   139 FQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLD 198
              QI KEL KL TMQTRVF+VHM   L  R F    + GMM +GY W++T  + N L   +
Sbjct:   215 DQILKELYKLMTMQTRVFVVHMPPTLGFRFFQKAREIGMMEEGYVWLLTDGVMNLLKSNE 274

Query:   199 -SEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFA 257
                 +++M+GVLGVRSH+PKSK+L  F  RW+ K+   K N    E+NI  L AYD+I A
Sbjct:   275 RGSSLENMQGVLGVRSHIPKSKKLKNFRLRWE-KMFPKKGNDE--EMNIFALRAYDSITA 331

Query:   258 LAKAVEKXXXXXXXXXXXXXXXXESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLV 317
             LA AVEK                 + T+ G+LG SR G  L   + N +F GL+GEF L+
Sbjct:   332 LAMAVEKTNIKSLRYDHPIASG-NNKTNLGTLGVSRYGPSLLKALSNVRFNGLAGEFELI 390

Query:   318 NGQLESSVFEIVNVIGTG-RVVGYWTSEKGLT--QTLDLTSK--NDLKQIIWPGDSTIAP 372
             NGQLESSVF+++N+IG+  R++G W    G+   ++ + TS     L  +IWPG S   P
Sbjct:   391 NGQLESSVFDVINIIGSEERIIGLWRPSNGIVNAKSKNTTSVLGERLGPVIWPGKSKDVP 450

Query:   373 TGWAIPS----LVVGTPVRLGFPQFLSVREDGDLNKTTYTGFCMEIFNATLEIVEEKLGM 428
              GW IP+    L VG PV+ GF +F+  + D   N  T TG+C+EIF A L+    KL  
Sbjct:   451 KGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPISNAMTPTGYCIEIFEAVLK----KLPY 506

Query:   429 KIHPQLVPY--EDENGEMAGTYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPYSES 486
              + P+ + +   DEN      YDE++YQ+    +DAVVGD++IVA+R+ YV+FTLPY+ES
Sbjct:   507 SVIPKYIAFLSPDEN------YDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTES 560

Query:   487 GVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVVKDCS-KFV-LVIWL 531
             GV+M+VP+K DN+ N W+FL+PW+ DLW   V   C   F+  ++W+
Sbjct:   561 GVSMMVPLK-DNK-NTWVFLRPWSLDLW---VTTACFFVFIGFIVWI 602
GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA
GO:0005215 "transporter activity" evidence=IEA
GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0006874 "cellular calcium ion homeostasis" evidence=NAS
GO:0009416 "response to light stimulus" evidence=NAS
GO:0005773 "vacuole" evidence=IDA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
TAIR|locus:2066148 GLR2.9 "glutamate receptor 2.9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062586 GLR5 "glutamate receptor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query753
cd06366350 cd06366, PBP1_GABAb_receptor, Ligand-binding domai 2e-91
pfam01094343 pfam01094, ANF_receptor, Receptor family ligand bi 2e-55
cd06350348 cd06350, PBP1_GPCR_family_C_like, Ligand-binding d 6e-51
cd06269298 cd06269, PBP1_glutamate_receptors_like, Family C G 3e-34
pfam00060268 pfam00060, Lig_chan, Ligand-gated ion channel 6e-34
smart00079133 smart00079, PBPe, Eukaryotic homologues of bacteri 9e-17
cd04509299 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family 1e-16
pfam00497220 pfam00497, SBP_bac_3, Bacterial extracellular solu 3e-16
cd06352389 cd06352, PBP1_NPR_GC_like, Ligand-binding domain o 2e-15
cd06268298 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas 9e-15
cd06362452 cd06362, PBP1_mGluR, Ligand binding domain of the 1e-14
cd06351328 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci 9e-14
cd06370404 cd06370, PBP1_Speract_GC_like, Ligand-binding doma 7e-12
cd01391269 cd01391, Periplasmic_Binding_Protein_Type_1, Type 9e-12
cd06374472 cd06374, PBP1_mGluR_groupI, Ligand binding domain 2e-09
cd00134218 cd00134, PBPb, Bacterial periplasmic transport sys 4e-09
COG0683366 COG0683, LivK, ABC-type branched-chain amino acid 6e-09
cd06368324 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc 1e-08
cd06363410 cd06363, PBP1_Taste_receptor, Ligand-binding domai 3e-08
cd06375458 cd06375, PBP1_mGluR_groupII, Ligand binding domain 5e-08
cd06380382 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole 5e-08
pfam13458343 pfam13458, Peripla_BP_6, Periplasmic binding prote 1e-07
cd06367362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole 2e-07
cd06376463 cd06376, PBP1_mGluR_groupIII, Ligand-binding domai 6e-07
smart00062219 smart00062, PBPb, Bacterial periplasmic substrate- 1e-06
cd06379377 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/i 1e-06
cd06364510 cd06364, PBP1_CaSR, Ligand-binding domain of the C 6e-06
COG0834275 COG0834, HisJ, ABC-type amino acid transport/signa 8e-06
cd06333312 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasm 1e-05
TIGR01096250 TIGR01096, 3A0103s03R, lysine-arginine-ornithine-b 3e-04
cd06361403 cd06361, PBP1_GPC6A_like, Ligand-binding domain of 0.002
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information 
 Score =  289 bits (743), Expect = 2e-91
 Identities = 128/341 (37%), Positives = 182/341 (53%), Gaps = 56/341 (16%)

Query: 19  AVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALS-PTEHPFFIRVTQ 77
           A+DLL+   V AIIGPQ  + A F+ E+  +  VP++SF  TSP+LS   ++P+F R T 
Sbjct: 58  ALDLLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTP 117

Query: 78  NDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAE 137
           +DS Q  AI+A+L+ F W  V  +YED +YG+G +  LVD LQE  I IS+ +  P SA 
Sbjct: 118 SDSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSAN 177

Query: 138 DFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSN----S 193
           D  I+  L KL    +RV +VH +  LA R+F    K GMM KGY WI+T  LS+    S
Sbjct: 178 DDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSS 237

Query: 194 LNVLDSEVIDSMEGVLGVRSHLPK-SKELGLFDRRWKSKLHSMKPNSSVTEINISGLWAY 252
            +  D E++++M+GV+GVRS++P  S  L  F  RW+ +  +  P   +TE +I  L+AY
Sbjct: 238 SDCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPE--LTEPSIYALYAY 295

Query: 253 DTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSG 312
           D ++A                                              +T F GLSG
Sbjct: 296 DAVWA----------------------------------------------STNFNGLSG 309

Query: 313 EFHLV-NGQLESSVFEIVNVIGTG-RVVGYWTSEKGLTQTL 351
                   +L S  FEI+N+IG G R +G+W+SE GL+  L
Sbjct: 310 PVQFDGGRRLASPAFEIINIIGKGYRKIGFWSSESGLSVFL 350

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350
>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region Back     alignment and domain information
>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information
>gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 Back     alignment and domain information
>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>gnl|CDD|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane bound guanylyl cyclases Back     alignment and domain information
>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>gnl|CDD|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>gnl|CDD|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein Back     alignment and domain information
>gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>gnl|CDD|107374 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>gnl|CDD|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information
>gnl|CDD|233269 TIGR01096, 3A0103s03R, lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 753
KOG1054897 consensus Glutamate-gated AMPA-type ion channel re 100.0
KOG4440 993 consensus NMDA selective glutamate-gated ion chann 100.0
KOG1053 1258 consensus Glutamate-gated NMDA-type ion channel re 100.0
KOG1052656 consensus Glutamate-gated kainate-type ion channel 100.0
cd06365469 PBP1_Pheromone_receptor Ligand-binding domain of t 100.0
cd06364510 PBP1_CaSR Ligand-binding domain of the CaSR calciu 100.0
cd06361403 PBP1_GPC6A_like Ligand-binding domain of the promi 100.0
cd06375458 PBP1_mGluR_groupII Ligand binding domain of the gr 100.0
cd06362452 PBP1_mGluR Ligand binding domain of the metabotrop 100.0
cd06374472 PBP1_mGluR_groupI Ligand binding domain of the gro 100.0
cd06367362 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali 100.0
cd06376463 PBP1_mGluR_groupIII Ligand-binding domain of the g 100.0
cd06379377 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ 100.0
cd06390364 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin 100.0
cd06380382 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali 100.0
cd06363410 PBP1_Taste_receptor Ligand-binding domain of the T 100.0
cd06386387 PBP1_NPR_C_like Ligand-binding domain of type C na 100.0
cd06389370 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin 100.0
cd06388371 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin 100.0
cd06393384 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol 100.0
cd06372391 PBP1_GC_G_like Ligand-binding domain of membrane g 100.0
cd06366350 PBP1_GABAb_receptor Ligand-binding domain of GABAb 100.0
cd06352389 PBP1_NPR_GC_like Ligand-binding domain of membrane 100.0
cd06373396 PBP1_NPR_like Ligand binding domain of natriuretic 100.0
cd06385405 PBP1_NPR_A Ligand-binding domain of type A natriur 100.0
cd06387372 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin 100.0
cd06370404 PBP1_Speract_GC_like Ligand-binding domain of memb 100.0
cd06392400 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v 100.0
cd06384399 PBP1_NPR_B Ligand-binding domain of type B natriur 100.0
cd06371382 PBP1_sensory_GC_DEF_like Ligand-binding domain of 100.0
KOG1056878 consensus Glutamate-gated metabotropic ion channel 100.0
cd06391400 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v 100.0
PF01094348 ANF_receptor: Receptor family ligand binding regio 100.0
cd06378362 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ 100.0
cd06382327 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v 100.0
cd06342334 PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind 100.0
cd06338345 PBP1_ABC_ligand_binding_like_5 Type I periplasmic 100.0
PRK15404369 leucine ABC transporter subunit substrate-binding 99.98
cd06345344 PBP1_ABC_ligand_binding_like_10 Type I periplasmic 99.97
cd06346312 PBP1_ABC_ligand_binding_like_11 Type I periplasmic 99.97
cd06368324 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu 99.97
cd06381363 PBP1_iGluR_delta_like N-terminal leucine/isoleucin 99.97
cd06350348 PBP1_GPCR_family_C_like Ligand-binding domain of m 99.97
cd06348344 PBP1_ABC_ligand_binding_like_13 Type I periplasmic 99.97
cd06344332 PBP1_ABC_ligand_binding_like_9 Type I periplasmic 99.97
cd06340347 PBP1_ABC_ligand_binding_like_6 Type I periplasmic 99.97
cd06355348 PBP1_FmdD_like Periplasmic component (FmdD) of an 99.97
cd06327334 PBP1_SBP_like_1 Periplasmic solute-binding domain 99.97
COG0683366 LivK ABC-type branched-chain amino acid transport 99.97
cd06394333 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu 99.97
cd06360336 PBP1_alkylbenzenes_like Type I periplasmic binding 99.97
TIGR03669374 urea_ABC_arch urea ABC transporter, substrate-bind 99.96
cd06359333 PBP1_Nba_like Type I periplasmic binding component 99.96
cd06328333 PBP1_SBP_like_2 Periplasmic solute-binding domain 99.96
cd06329342 PBP1_SBP_like_3 Periplasmic solute-binding domain 99.96
cd06336347 PBP1_ABC_ligand_binding_like_3 Type I periplasmic 99.96
cd06347334 PBP1_ABC_ligand_binding_like_12 Type I periplasmic 99.96
cd06343362 PBP1_ABC_ligand_binding_like_8 Type I periplasmic 99.96
cd06383368 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine 99.96
cd06331333 PBP1_AmiC_like Type I periplasmic components of am 99.96
cd06349340 PBP1_ABC_ligand_binding_like_14 Type I periplasmic 99.96
TIGR03407359 urea_ABC_UrtA urea ABC transporter, urea binding p 99.96
cd06337357 PBP1_ABC_ligand_binding_like_4 Type I periplasmic 99.95
cd06330346 PBP1_Arsenic_SBP_like Periplasmic solute-binding d 99.95
cd06332333 PBP1_aromatic_compounds_like Type I periplasmic bi 99.95
cd06356334 PBP1_Amide_Urea_BP_like Periplasmic component (Fmd 99.95
cd06358333 PBP1_NHase Type I periplasmic-binding protein of t 99.95
cd06357360 PBP1_AmiC Periplasmic binding domain of amidase (A 99.95
cd06335347 PBP1_ABC_ligand_binding_like_2 Type I periplasmic 99.95
cd06334351 PBP1_ABC_ligand_binding_like_1 Type I periplasmic 99.95
PF13458343 Peripla_BP_6: Periplasmic binding protein; PDB: 4E 99.95
cd06351328 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc 99.95
cd06377382 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/ 99.93
TIGR03863347 PQQ_ABC_bind ABC transporter, substrate binding pr 99.93
cd06339336 PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin 99.93
PRK10797302 glutamate and aspartate transporter subunit; Provi 99.92
KOG1055865 consensus GABA-B ion channel receptor subunit GABA 99.92
cd06326336 PBP1_STKc_like Type I periplasmic binding domain o 99.91
PRK09495247 glnH glutamine ABC transporter periplasmic protein 99.91
PRK11260266 cystine transporter subunit; Provisional 99.9
PRK15010260 ABC transporter lysine/arginine/ornithine binding 99.89
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 99.89
PF13433363 Peripla_BP_5: Periplasmic binding protein domain; 99.89
PRK15007243 putative ABC transporter arginine-biding protein; 99.88
cd06341341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic 99.88
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 99.88
cd06333312 PBP1_ABC-type_HAAT_like Type I periplasmic binding 99.87
cd06269298 PBP1_glutamate_receptors_like Family C G-protein c 99.87
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 99.87
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 99.87
cd04509299 PBP1_ABC_transporter_GCPR_C_like Family C of G-pro 99.86
PRK15437259 histidine ABC transporter substrate-binding protei 99.86
cd06369380 PBP1_GC_C_enterotoxin_receptor Ligand-binding doma 99.85
cd06268298 PBP1_ABC_transporter_LIVBP_like Periplasmic bindin 99.83
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 99.81
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.81
TIGR03870246 ABC_MoxJ methanol oxidation system protein MoxJ. T 99.8
TIGR02285268 conserved hypothetical protein. Members of this fa 99.77
COG0834275 HisJ ABC-type amino acid transport/signal transduc 99.77
TIGR03871232 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa 99.76
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.76
cd00134218 PBPb Bacterial periplasmic transport systems use m 99.75
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 99.74
COG4623 473 Predicted soluble lytic transglycosylase fused to 99.49
cd01391269 Periplasmic_Binding_Protein_Type_1 Type 1 periplas 99.38
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 99.35
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 99.13
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 99.1
PF04348536 LppC: LppC putative lipoprotein; InterPro: IPR0074 98.95
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 98.89
PF1061365 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- 98.66
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 98.51
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 98.49
cd06267264 PBP1_LacI_sugar_binding_like Ligand binding domain 98.47
cd01536267 PBP1_ABC_sugar_binding_like Periplasmic sugar-bind 98.34
cd06282266 PBP1_GntR_like_2 Ligand-binding domain of putative 98.14
cd06300272 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi 98.14
cd06273268 PBP1_GntR_like_1 This group includes the ligand-bi 98.01
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 97.99
cd06320275 PBP1_allose_binding Periplasmic allose-binding dom 97.88
cd06323268 PBP1_ribose_binding Periplasmic sugar-binding doma 97.87
cd06319277 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b 97.84
COG3221299 PhnD ABC-type phosphate/phosphonate transport syst 97.78
cd06325281 PBP1_ABC_uncharacterized_transporter Type I peripl 97.77
PRK11553314 alkanesulfonate transporter substrate-binding subu 97.76
cd06298268 PBP1_CcpA_like Ligand-binding domain of the catabo 97.67
cd06317275 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi 97.58
cd01545270 PBP1_SalR Ligand-binding domain of DNA transcripti 97.58
cd06305273 PBP1_methylthioribose_binding_like Methylthioribos 97.56
COG3107604 LppC Putative lipoprotein [General function predic 97.49
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 97.47
cd06271268 PBP1_AglR_RafR_like Ligand-binding domain of DNA t 97.47
cd06289268 PBP1_MalI_like Ligand-binding domain of MalI, a tr 97.45
cd06301272 PBP1_rhizopine_binding_like Periplasmic binding pr 97.43
cd06309273 PBP1_YtfQ_like Periplasmic binding domain of ABC-t 97.43
TIGR01481329 ccpA catabolite control protein A. Catabolite cont 97.41
cd06312271 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi 97.4
cd06284267 PBP1_LacI_like_6 Ligand-binding domain of an uncha 97.33
PRK10653295 D-ribose transporter subunit RbsB; Provisional 97.29
PF13407257 Peripla_BP_4: Periplasmic binding protein domain; 97.23
cd01542259 PBP1_TreR_like Ligand-binding domain of DNA transc 97.21
cd01575268 PBP1_GntR Ligand-binding domain of DNA transcripti 97.21
cd06310273 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi 97.2
cd06275269 PBP1_PurR Ligand-binding domain of purine represso 97.17
cd06288269 PBP1_sucrose_transcription_regulator Ligand-bindin 97.15
cd06311274 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi 97.11
cd06294270 PBP1_ycjW_transcription_regulator_like Ligand-bind 97.1
cd06281269 PBP1_LacI_like_5 Ligand-binding domain of uncharac 97.08
PF00532279 Peripla_BP_1: Periplasmic binding proteins and sug 97.08
TIGR03427328 ABC_peri_uca ABC transporter periplasmic binding p 97.07
cd06274264 PBP1_FruR Ligand binding domain of DNA transcripti 97.06
PRK10703341 DNA-binding transcriptional repressor PurR; Provis 97.06
cd06283267 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of 97.04
cd06313272 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi 97.04
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 97.02
PRK10014342 DNA-binding transcriptional repressor MalI; Provis 97.02
cd06295275 PBP1_CelR Ligand binding domain of a transcription 96.98
cd01540289 PBP1_arabinose_binding Periplasmic L-arabinose-bin 96.98
cd06278266 PBP1_LacI_like_2 Ligand-binding domain of uncharac 96.94
COG2984322 ABC-type uncharacterized transport system, peripla 96.93
COG1609333 PurR Transcriptional regulators [Transcription] 96.91
cd06299265 PBP1_LacI_like_13 Ligand-binding domain of DNA-bin 96.91
cd06270268 PBP1_GalS_like Ligand binding domain of DNA transc 96.87
cd06293269 PBP1_LacI_like_11 Ligand-binding domain of unchara 96.87
cd06296270 PBP1_CatR_like Ligand-binding domain of a LacI-lik 96.87
cd06324305 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b 96.86
cd06308270 PBP1_sensor_kinase_like Periplasmic binding domain 96.85
cd06322267 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b 96.84
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 96.8
cd01574264 PBP1_LacI Ligand-binding domain of DNA transcripti 96.79
PRK11303328 DNA-binding transcriptional regulator FruR; Provis 96.77
cd06285265 PBP1_LacI_like_7 Ligand-binding domain of uncharac 96.73
PRK10423327 transcriptional repressor RbsR; Provisional 96.72
cd06290265 PBP1_LacI_like_9 Ligand-binding domain of uncharac 96.71
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 96.68
TIGR02122320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 96.68
cd06297269 PBP1_LacI_like_12 Ligand-binding domain of unchara 96.67
TIGR00363258 lipoprotein, YaeC family. This family of putative 96.66
cd06292273 PBP1_LacI_like_10 Ligand-binding domain of unchara 96.64
cd06303280 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot 96.64
cd01541273 PBP1_AraR Ligand-binding domain of DNA transcripti 96.52
cd06286260 PBP1_CcpB_like Ligand-binding domain of a novel tr 96.47
cd06291265 PBP1_Qymf_like Ligand binding domain of the lacI-l 96.44
cd01538288 PBP1_ABC_xylose_binding Periplasmic xylose-binding 96.44
TIGR02417327 fruct_sucro_rep D-fructose-responsive transcriptio 96.41
PRK10727343 DNA-binding transcriptional regulator GalR; Provis 96.41
cd06321271 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b 96.35
cd06318282 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi 96.35
cd06307275 PBP1_uncharacterized_sugar_binding Periplasmic sug 96.31
cd06306268 PBP1_TorT-like TorT-like proteins, a periplasmic b 96.3
cd01539303 PBP1_GGBP Periplasmic glucose/galactose-binding pr 96.24
cd06272261 PBP1_hexuronate_repressor_like Ligand-binding doma 96.18
cd06316294 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi 96.15
cd06354265 PBP1_BmpA_PnrA_like Periplasmic binding domain of 96.14
PRK09526342 lacI lac repressor; Reviewed 96.14
PRK09492315 treR trehalose repressor; Provisional 96.1
PF03466209 LysR_substrate: LysR substrate binding domain; Int 96.08
PRK11063271 metQ DL-methionine transporter substrate-binding s 96.07
TIGR02990239 ectoine_eutA ectoine utilization protein EutA. Mem 96.06
COG1879322 RbsB ABC-type sugar transport system, periplasmic 96.01
cd05466197 PBP2_LTTR_substrate The substrate binding domain o 95.98
PRK14987331 gluconate operon transcriptional regulator; Provis 95.92
cd06280263 PBP1_LacI_like_4 Ligand-binding domain of uncharac 95.91
PRK09701311 D-allose transporter subunit; Provisional 95.9
cd06279283 PBP1_LacI_like_3 Ligand-binding domain of uncharac 95.88
PRK10401346 DNA-binding transcriptional regulator GalS; Provis 95.84
PRK11480320 tauA taurine transporter substrate binding subunit 95.8
cd06277268 PBP1_LacI_like_1 Ligand-binding domain of uncharac 95.65
PF13531230 SBP_bac_11: Bacterial extracellular solute-binding 95.65
cd08418201 PBP2_TdcA The C-terminal substrate binding domain 95.61
PRK11041309 DNA-binding transcriptional regulator CytR; Provis 95.57
cd08468202 PBP2_Pa0477 The C-terminal substrate biniding doma 95.55
cd06314271 PBP1_tmGBP Periplasmic sugar-binding domain of The 95.53
PRK10936343 TMAO reductase system periplasmic protein TorT; Pr 95.51
cd06302298 PBP1_LsrB_Quorum_Sensing Periplasmic binding domai 95.51
PRK15408336 autoinducer 2-binding protein lsrB; Provisional 95.49
PF14503232 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B. 95.48
cd06287269 PBP1_LacI_like_8 Ligand-binding domain of uncharac 95.45
TIGR00787257 dctP tripartite ATP-independent periplasmic transp 95.38
cd06304260 PBP1_BmpA_like Periplasmic binding component of a 95.35
TIGR02405311 trehalos_R_Ecol trehalose operon repressor, proteo 95.34
PRK15395330 methyl-galactoside ABC transporter galactose-bindi 95.25
TIGR02634302 xylF D-xylose ABC transporter, substrate-binding p 95.21
cd08459201 PBP2_DntR_NahR_LinR_like The C-terminal substrate 95.17
cd08417200 PBP2_Nitroaromatics_like The C-terminal substrate 95.04
cd08421198 PBP2_LTTR_like_1 The C-terminal substrate binding 94.94
cd01543265 PBP1_XylR Ligand-binding domain of DNA transcripti 94.79
TIGR02955295 TMAO_TorT TMAO reductase system periplasmic protei 94.75
cd08411200 PBP2_OxyR The C-terminal substrate-binding domain 94.68
PF04392294 ABC_sub_bind: ABC transporter substrate binding pr 94.65
cd08438197 PBP2_CidR The C-terminal substrate binding domain 94.64
cd08426199 PBP2_LTTR_like_5 The C-terminal substrate binding 94.63
cd01544270 PBP1_GalR Ligand-binding domain of DNA transcripti 94.61
cd08433198 PBP2_Nac The C-teminal substrate binding domain of 94.6
PRK01686215 hisG ATP phosphoribosyltransferase catalytic subun 94.53
PRK11151305 DNA-binding transcriptional regulator OxyR; Provis 94.46
TIGR01256216 modA molybdenum ABC transporter, periplasmic molyb 94.45
cd08412198 PBP2_PAO1_like The C-terminal substrate-binding do 94.45
cd08442193 PBP2_YofA_SoxR_like The C-terminal substrate bindi 94.36
TIGR02637302 RhaS rhamnose ABC transporter, rhamnose-binding pr 94.36
cd08466200 PBP2_LeuO The C-terminal substrate binding domain 94.31
PLN02245403 ATP phosphoribosyl transferase 94.31
cd08463203 PBP2_DntR_like_4 The C-terminal substrate binding 94.25
PRK09861272 cytoplasmic membrane lipoprotein-28; Provisional 94.13
TIGR00035229 asp_race aspartate racemase. 94.08
PF12727193 PBP_like: PBP superfamily domain; InterPro: IPR024 94.07
PRK12679316 cbl transcriptional regulator Cbl; Reviewed 94.06
cd08419197 PBP2_CbbR_RubisCO_like The C-terminal substrate bi 94.02
PRK09791302 putative DNA-binding transcriptional regulator; Pr 94.0
cd08440197 PBP2_LTTR_like_4 TThe C-terminal substrate binding 93.95
cd08462200 PBP2_NodD The C-terminal substsrate binding domain 93.94
PF03401274 TctC: Tripartite tricarboxylate transporter family 93.86
cd08434195 PBP2_GltC_like The substrate binding domain of Lys 93.84
cd08435201 PBP2_GbpR The C-terminal substrate binding domain 93.74
PRK11233305 nitrogen assimilation transcriptional regulator; P 93.71
PF13377160 Peripla_BP_3: Periplasmic binding protein-like dom 93.71
cd08429204 PBP2_NhaR The C-terminal substrate binding domain 93.65
COG0715335 TauA ABC-type nitrate/sulfonate/bicarbonate transp 93.65
PRK12682309 transcriptional regulator CysB-like protein; Revie 93.62
cd08469221 PBP2_PnbR The C-terminal substrate binding domain 93.6
PF01634163 HisG: ATP phosphoribosyltransferase; InterPro: IPR 93.55
PF03480286 SBP_bac_7: Bacterial extracellular solute-binding 93.54
CHL00180305 rbcR LysR transcriptional regulator; Provisional 93.44
cd08460200 PBP2_DntR_like_1 The C-terminal substrate binding 93.43
PRK10355330 xylF D-xylose transporter subunit XylF; Provisiona 93.35
cd08413198 PBP2_CysB_like The C-terminal substrate domain of 93.33
PRK12684313 transcriptional regulator CysB-like protein; Revie 93.3
cd08461198 PBP2_DntR_like_3 The C-terminal substrate binding 93.26
COG2358321 Imp TRAP-type uncharacterized transport system, pe 93.23
cd08467200 PBP2_SyrM The C-terminal substrate binding of LysR 93.19
cd08420201 PBP2_CysL_like C-terminal substrate binding domain 93.16
COG1910223 Periplasmic molybdate-binding protein/domain [Inor 93.05
COG1794230 RacX Aspartate racemase [Cell envelope biogenesis, 92.93
cd08414197 PBP2_LTTR_aromatics_like The C-terminal substrate 92.9
PRK10339327 DNA-binding transcriptional repressor EbgR; Provis 92.89
cd08436194 PBP2_LTTR_like_3 The C-terminal substrate binding 92.84
PRK10200230 putative racemase; Provisional 92.84
cd08415196 PBP2_LysR_opines_like The C-terminal substrate-dom 92.77
cd08464200 PBP2_DntR_like_2 The C-terminal substrate binding 92.71
cd08444198 PBP2_Cbl The C-terminal substrate binding domain o 92.65
PRK11242296 DNA-binding transcriptional regulator CynR; Provis 92.6
PRK10341312 DNA-binding transcriptional activator TdcA; Provis 92.59
PRK09860383 putative alcohol dehydrogenase; Provisional 92.48
cd08437198 PBP2_MleR The substrate binding domain of LysR-typ 92.47
cd08441198 PBP2_MetR The C-terminal substrate binding domain 92.45
COG3473238 Maleate cis-trans isomerase [Secondary metabolites 92.42
TIGR02424300 TF_pcaQ pca operon transcription factor PcaQ. Memb 92.4
cd08448197 PBP2_LTTR_aromatics_like_2 The C-terminal substrat 92.26
PRK12683309 transcriptional regulator CysB-like protein; Revie 92.23
PRK10837290 putative DNA-binding transcriptional regulator; Pr 92.23
PRK13583228 hisG ATP phosphoribosyltransferase catalytic subun 92.21
cd08425197 PBP2_CynR The C-terminal substrate-binding domain 92.19
cd08430199 PBP2_IlvY The C-terminal substrate binding of LysR 92.17
cd08456196 PBP2_LysR The C-terminal substrate binding domain 91.97
COG1454377 EutG Alcohol dehydrogenase, class IV [Energy produ 91.94
TIGR00070182 hisG ATP phosphoribosyltransferase. Members of thi 91.81
cd08416199 PBP2_MdcR The C-terminal substrate-binding domian 91.78
cd08451199 PBP2_BudR The C-terminal substrate binding domain 91.74
COG0725258 ModA ABC-type molybdate transport system, periplas 91.7
cd08427195 PBP2_LTTR_like_2 The C-terminal substrate binding 91.68
cd08189374 Fe-ADH5 Iron-containing alcohol dehydrogenases-lik 91.56
COG1638332 DctP TRAP-type C4-dicarboxylate transport system, 91.55
cd06353258 PBP1_BmpA_Med_like Periplasmic binding domain of t 91.54
PRK15454395 ethanol dehydrogenase EutG; Provisional 91.49
cd08423200 PBP2_LTTR_like_6 The C-terminal substrate binding 91.48
cd08192370 Fe-ADH7 Iron-containing alcohol dehydrogenases-lik 91.26
cd08457196 PBP2_OccR The C-terminal substrate-domain of LysR- 91.19
cd06315280 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi 91.1
cd08458196 PBP2_NocR The C-terminal substrate-domain of LysR- 90.88
TIGR03339279 phn_lysR aminoethylphosphonate catabolism associat 90.82
cd08465200 PBP2_ToxR The C-terminal substrate binding domain 90.8
PRK10624382 L-1,2-propanediol oxidoreductase; Provisional 90.74
cd08190414 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv 90.73
PRK12681324 cysB transcriptional regulator CysB; Reviewed 90.73
cd08193376 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze 90.52
cd08551370 Fe-ADH iron-containing alcohol dehydrogenases (Fe- 90.41
cd08453200 PBP2_IlvR The C-terminal substrate binding domain 90.24
cd08450196 PBP2_HcaR The C-terminal substrate binding domain 90.19
cd08443198 PBP2_CysB The C-terminal substrate domain of LysR- 90.19
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 90.06
PRK09508314 leuO leucine transcriptional activator; Reviewed 89.81
PF00465366 Fe-ADH: Iron-containing alcohol dehydrogenase ; In 89.76
PRK15421317 DNA-binding transcriptional regulator MetR; Provis 89.7
PRK11013309 DNA-binding transcriptional regulator LysR; Provis 89.66
PF06506176 PrpR_N: Propionate catabolism activator; InterPro: 89.61
TIGR02638379 lactal_redase lactaldehyde reductase. This clade o 89.6
cd08194375 Fe-ADH6 Iron-containing alcohol dehydrogenases-lik 89.56
PRK12680327 transcriptional regulator CysB-like protein; Revie 89.2
cd06276247 PBP1_FucR_like Ligand-binding domain of a transcri 89.09
cd08449197 PBP2_XapR The C-terminal substrate binding domain 88.94
PRK11482317 putative DNA-binding transcriptional regulator; Pr 88.86
cd08185380 Fe-ADH1 Iron-containing alcohol dehydrogenases-lik 88.46
cd08446198 PBP2_Chlorocatechol The C-terminal substrate bindi 88.4
KOG3857465 consensus Alcohol dehydrogenase, class IV [Energy 88.25
PRK10677257 modA molybdate transporter periplasmic protein; Pr 88.02
cd08188377 Fe-ADH4 Iron-containing alcohol dehydrogenases-lik 87.75
cd08181357 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 87.65
COG0040290 HisG ATP phosphoribosyltransferase [Amino acid tra 87.53
cd08191386 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz 87.23
cd08176377 LPO Lactadehyde:propanediol oxidoreductase (LPO) c 87.12
cd06533171 Glyco_transf_WecG_TagA The glycosyltransferase Wec 86.86
PRK09906296 DNA-binding transcriptional regulator HcaR; Provis 86.54
cd08182367 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c 86.06
PRK10094308 DNA-binding transcriptional activator AllS; Provis 85.7
PF13685250 Fe-ADH_2: Iron-containing alcohol dehydrogenase; P 85.5
PRK11062296 nhaR transcriptional activator NhaR; Provisional 85.32
cd08445203 PBP2_BenM_CatM_CatR The C-terminal substrate bindi 85.21
cd08171345 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol 85.12
PRK14498633 putative molybdopterin biosynthesis protein MoeA/L 85.1
TIGR03414290 ABC_choline_bnd choline ABC transporter, periplasm 84.9
cd08187382 BDH Butanol dehydrogenase catalyzes the conversion 84.73
cd08170351 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox 84.6
PRK07475245 hypothetical protein; Provisional 84.54
cd08452197 PBP2_AlsR The C-terminal substrate binding domain 84.24
cd08186383 Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ 84.05
PRK11716269 DNA-binding transcriptional regulator IlvY; Provis 84.04
PRK13584204 hisG ATP phosphoribosyltransferase catalytic subun 83.75
TIGR00696177 wecB_tagA_cpsF bacterial polymer biosynthesis prot 83.58
PRK11074300 putative DNA-binding transcriptional regulator; Pr 83.57
cd07766332 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) 83.26
cd08486198 PBP2_CbnR The C-terminal substrate binding domain 83.0
PF13407257 Peripla_BP_4: Periplasmic binding protein domain; 82.23
PRK03692243 putative UDP-N-acetyl-D-mannosaminuronic acid tran 81.36
PRK13348294 chromosome replication initiation inhibitor protei 81.28
cd08183374 Fe-ADH2 Iron-containing alcohol dehydrogenases-lik 81.16
COG3181319 Uncharacterized protein conserved in bacteria [Fun 80.96
PRK09423366 gldA glycerol dehydrogenase; Provisional 80.23
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-70  Score=551.83  Aligned_cols=689  Identities=16%  Similarity=0.271  Sum_probs=557.5

Q ss_pred             CChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHHHHH
Q 037761           10 FKDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAISAV   89 (753)
Q Consensus        10 ~~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~~~~   89 (753)
                      .+.-.-..+.|.-.++ +|.|++|-+.-.....+..+++..++|.|+++.    -++...++..++.|.   ...+++.+
T Consensus        74 a~Sf~~tnafCsq~s~-Gv~Aifg~yd~ks~~~ltsfc~aLh~~~vtpsf----p~~~~~~Fviq~RP~---l~~al~s~  145 (897)
T KOG1054|consen   74 ANSFAVTNAFCSQFSR-GVYAIFGFYDKKSVNTLTSFCGALHVSFVTPSF----PTDGDNQFVIQMRPA---LKGALLSL  145 (897)
T ss_pred             hhhHHHHHHHHHHHhh-hHhhheecccccchhhhhhhccceeeeeecccC----CcCCCceEEEEeCch---HHHHHHHH
Confidence            4445566788888887 999999999999999999999999999999865    224556789999998   67899999


Q ss_pred             HHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCCCchhhHHHHHHHHhcCCccEEEEEeChHHHHHHH
Q 037761           90 LQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLF  169 (753)
Q Consensus        90 l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIi~~~~~~~~~~~~  169 (753)
                      +.|++|.++..+| |.+-|....+++.+.+.+++..|.....-. ..+..+++.+++.+.....+-|++-|..+-.-.++
T Consensus       146 i~hy~W~~fv~ly-D~~rg~s~Lqai~~~a~~~nw~VtA~~v~~-~~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il  223 (897)
T KOG1054|consen  146 IDHYKWEKFVYLY-DTDRGLSILQAIMEAAAQNNWQVTAINVGN-INDVKEYRMLFEMLDRRQENRVLIDCESERRNRIL  223 (897)
T ss_pred             HHhcccceEEEEE-cccchHHHHHHHHHHHHhcCceEEEEEcCC-cccHHHHHHHHHHHhccccceEEEEcccHHHHHHH
Confidence            9999999999999 566788889999999999999987664332 23456699999999887777777777777666666


Q ss_pred             HHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCCccccchhHH
Q 037761          170 ALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGL  249 (753)
Q Consensus       170 ~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~  249 (753)
                      .++.+.|-...+|++|.........+.  ........++.+|...+.+.|..++|.++|++.....+++....++..-++
T Consensus       224 ~q~i~~~k~~~~YHYvlaNl~f~d~dl--~~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~~~g~~~~~~k~tsA  301 (897)
T KOG1054|consen  224 LQVIELGKHVKGYHYVLANLGFTDIDL--ERFQHGGANITGFQIVNKNNPMVKKFIQRWKELDEREYPGASNDPIKYTSA  301 (897)
T ss_pred             HHHHHHhhhccceEEEEeeCCCchhhH--HHHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccccCCCCCCCcchhhh
Confidence            677776666689999998764433222  234455667889999999999999999999998888788777778888899


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC--CCccccchHHHHHHHHhcccccceeeEEe-eCCccceeEE
Q 037761          250 WAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFG--SLGFSRIGHILCNQILNTQFKGLSGEFHL-VNGQLESSVF  326 (753)
Q Consensus       250 ~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g~~~~~~y  326 (753)
                      .+|||+.++++|++.+..+......     .+..+||.  +..+|.+|..+..+++++.++|+||.|+| ..|.|.+...
T Consensus       302 lthDailV~~eaf~~~~~q~~~~~r-----RG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~  376 (897)
T KOG1054|consen  302 LTHDAILVMAEAFRSLRRQRIDISR-----RGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTI  376 (897)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhchhc-----cCCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCccccceE
Confidence            9999999999999988544322211     11234553  34578899999999999999999999999 8999988999


Q ss_pred             EEEEEeccc-eEEEEeecCCCcccccccCccCCCCceecCCCCCCCCCcccccceEEeeccCCCCcceEEEEEcCCCCcc
Q 037761          327 EIVNVIGTG-RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDLNKT  405 (753)
Q Consensus       327 ~i~~~~~~~-~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~  405 (753)
                      +|++++.++ .++|+|....++....         +.- +.+..+  ....+.+..|.+.-..||..+... .....++.
T Consensus       377 ~i~elk~~~~rk~~~W~e~~~fv~~~---------t~a-~~~~d~--~~~~n~tvvvttiL~spyvm~kkn-~~~~egn~  443 (897)
T KOG1054|consen  377 DIVELKSNGSRKVGYWNEGEGFVPGS---------TVA-QSRNDQ--ASKENRTVVVTTILESPYVMLKKN-HEQLEGNE  443 (897)
T ss_pred             EEEEeccCCcceeeeecccCceeecc---------ccc-cccccc--cccccceEEEEEecCCchhHHHhh-HHHhcCCc
Confidence            999999988 9999998887654311         111 111101  111222677777777777665442 23335788


Q ss_pred             eeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCC-CCC-ChHHHHHHHHcCcccEEEeeeeeecccceeeeccccc
Q 037761          406 TYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGE-MAG-TYDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPY  483 (753)
Q Consensus       406 ~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~~fs~p~  483 (753)
                      ++.|||+||+.+||+    +.++++++.++..+....+ ..+ -|+||++.|..|++|++++++++|.+|++.+|||.|+
T Consensus       444 ryEGyCvdLa~~iAk----hi~~~Y~l~iv~dgkyGardaD~k~WnGMvGeLv~grAdiavApLTIt~~REeviDFSKPf  519 (897)
T KOG1054|consen  444 RYEGYCVDLAAEIAK----HIGIKYKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPF  519 (897)
T ss_pred             ccceeHHHHHHHHHH----hcCceEEEEEecCCcccccCCCcccccchhHHHhcCccceEEeeeeeehhhhhhhccccch
Confidence            999999999999999    8888888877764332222 333 4999999999999999999999999999999999999


Q ss_pred             cccceEEEEecccCCCCceeEEEecCccccceee----------------------------------------------
Q 037761          484 SESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLAL----------------------------------------------  517 (753)
Q Consensus       484 ~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~i----------------------------------------------  517 (753)
                      +..++++++++|.+..+.++.|+.|..-.+|+||                                              
T Consensus       520 MslGISIMIKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~~~~~NeFgifNs  599 (897)
T KOG1054|consen  520 MSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTPSDPPNEFGIFNS  599 (897)
T ss_pred             hhcCeEEEEeCcccCCCCeeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCCCCCCccchhhHH
Confidence            9999999999999988999999999999999999                                              


Q ss_pred             ----------------ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcCC-eEEEecCchHH
Q 037761          518 ----------------VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTESH-FVGFQSGSFVE  580 (753)
Q Consensus       518 ----------------p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~~-~~~~~~~~~~~  580 (753)
                                      |+|.++|++-.+||||+||++++|||||++|||..++.+||.|.|||+++.+ .+|+..+.+..
T Consensus       600 LWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTvErMvsPIESaEDLAkQteIaYGt~~~GSTk  679 (897)
T KOG1054|consen  600 LWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTK  679 (897)
T ss_pred             HHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhHHhhcCcchhHHHHhhcceeeeeecCCCchH
Confidence                            9999999999999999999999999999999999999999999999998776 78888888888


Q ss_pred             HHHHHhhC---------CCCCce-ecCCCHHHHHHHHhcCCCCCCeeEEEeccccHHHHHhcC-CCCcEEeCcccccCce
Q 037761          581 DFLVKQLN---------FSRNQT-RPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKY-SSKYTTAGPIYRTDGL  649 (753)
Q Consensus       581 ~~~~~~~~---------~~~~~~-~~~~~~~~~~~~l~~g~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~  649 (753)
                      +++++..-         ...+.. +-..+..|++.++++.+   |..|++.+...-+|.-++. | +-..++..+...+|
T Consensus       680 eFFr~Skiavy~kMW~yM~SaepsVFv~t~aeGv~rVRksK---GkyAfLLEsTmNey~eqRkPC-DTMKVGgNLds~GY  755 (897)
T KOG1054|consen  680 EFFRRSKIAVYEKMWTYMKSAEPSVFVRTTAEGVARVRKSK---GKYAFLLESTMNEYIEQRKPC-DTMKVGGNLDSKGY  755 (897)
T ss_pred             HHHhhhhHHHHHHHHHHHhcCCcceeeehhhhHHHHHHhcC---CceEeehHhhhhhhhhccCCc-cceecccccCCcce
Confidence            88884110         000111 23456789999998654   4588888888888877665 8 66677889999999


Q ss_pred             EEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCCCCCCCcccCCCccCcccccccchhhHHHHHHHHHHHHHHHH
Q 037761          650 GFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGGLFIIVGIATLLALLISE  729 (753)
Q Consensus       650 ~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~f~il~~g~~l~~~vf~  729 (753)
                      +++.||+|.|+..+|-+++.|.|.| .++++.+|||..+++|.......++....|++.+.+|+||||..|++||+++.+
T Consensus       756 GiATp~Gsslr~~vNLAvLkL~E~G-~LdKLkNKWWYDkGeC~sg~~ds~~ktsaLsLSnVAGvFYIL~gGl~laMlvAL  834 (897)
T KOG1054|consen  756 GIATPKGSSLRNAVNLAVLKLNEQG-LLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVAL  834 (897)
T ss_pred             eecCCCCcccccchhhhhhhhcccc-hHHHhhhhhcccccccCCCCCCCCcchhhcchhhccceeeeehhhHHHHHHHHH
Confidence            9999999999999999999999999 999999999999999988776655566799999999999999999999999998


Q ss_pred             HHHhccch
Q 037761          730 RYIWQKPV  737 (753)
Q Consensus       730 ~~~~~~~~  737 (753)
                      .+++-|.+
T Consensus       835 iEF~yksr  842 (897)
T KOG1054|consen  835 IEFCYKSR  842 (897)
T ss_pred             HHHHHHhh
Confidence            55554433

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor Back     alignment and domain information
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor Back     alignment and domain information
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor Back     alignment and domain information
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor Back     alignment and domain information
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G Back     alignment and domain information
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family Back     alignment and domain information
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor Back     alignment and domain information
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor Back     alignment and domain information
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases Back     alignment and domain information
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor Back     alignment and domain information
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues Back     alignment and domain information
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family Back     alignment and domain information
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] Back     alignment and domain information
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family Back     alignment and domain information
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors Back     alignment and domain information
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional Back     alignment and domain information
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 Back     alignment and domain information
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family Back     alignment and domain information
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor Back     alignment and domain information
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene Back     alignment and domain information
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type Back     alignment and domain information
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway Back     alignment and domain information
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria Back     alignment and domain information
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors Back     alignment and domain information
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) Back     alignment and domain information
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems Back     alignment and domain information
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein Back     alignment and domain information
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes Back     alignment and domain information
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides Back     alignment and domain information
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family Back     alignment and domain information
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A Back     alignment and domain information
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family Back     alignment and domain information
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C Back     alignment and domain information
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ Back     alignment and domain information
>TIGR02285 conserved hypothetical protein Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily Back     alignment and domain information
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily Back     alignment and domain information
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis Back     alignment and domain information
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs Back     alignment and domain information
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation Back     alignment and domain information
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>COG3107 LppC Putative lipoprotein [General function prediction only] Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria Back     alignment and domain information
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines Back     alignment and domain information
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems Back     alignment and domain information
>TIGR01481 ccpA catabolite control protein A Back     alignment and domain information
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria Back     alignment and domain information
>PRK10653 D-ribose transporter subunit RbsB; Provisional Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli Back     alignment and domain information
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors Back     alignment and domain information
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs Back     alignment and domain information
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional Back     alignment and domain information
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR Back     alignment and domain information
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional Back     alignment and domain information
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily Back     alignment and domain information
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>COG1609 PurR Transcriptional regulators [Transcription] Back     alignment and domain information
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia Back     alignment and domain information
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism Back     alignment and domain information
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation Back     alignment and domain information
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems Back     alignment and domain information
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional Back     alignment and domain information
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK10423 transcriptional repressor RbsR; Provisional Back     alignment and domain information
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs Back     alignment and domain information
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species Back     alignment and domain information
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs Back     alignment and domain information
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor Back     alignment and domain information
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional Back     alignment and domain information
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems Back     alignment and domain information
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria Back     alignment and domain information
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species Back     alignment and domain information
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea Back     alignment and domain information
>PRK09526 lacI lac repressor; Reviewed Back     alignment and domain information
>PRK09492 treR trehalose repressor; Provisional Back     alignment and domain information
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins [] Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>TIGR02990 ectoine_eutA ectoine utilization protein EutA Back     alignment and domain information
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd05466 PBP2_LTTR_substrate The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>PRK14987 gluconate operon transcriptional regulator; Provisional Back     alignment and domain information
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK09701 D-allose transporter subunit; Provisional Back     alignment and domain information
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A Back     alignment and domain information
>cd08418 PBP2_TdcA The C-terminal substrate binding domain of LysR-type transcriptional regulator TdcA, which is involved in the degradation of L-serine and L-threonine, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional Back     alignment and domain information
>cd08468 PBP2_Pa0477 The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs Back     alignment and domain information
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional Back     alignment and domain information
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs Back     alignment and domain information
>PRK15408 autoinducer 2-binding protein lsrB; Provisional Back     alignment and domain information
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B Back     alignment and domain information
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family Back     alignment and domain information
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria Back     alignment and domain information
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial Back     alignment and domain information
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional Back     alignment and domain information
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein Back     alignment and domain information
>cd08459 PBP2_DntR_NahR_LinR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08421 PBP2_LTTR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR) Back     alignment and domain information
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT Back     alignment and domain information
>cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>cd08438 PBP2_CidR The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08426 PBP2_LTTR_like_5 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism Back     alignment and domain information
>cd08433 PBP2_Nac The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed Back     alignment and domain information
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional Back     alignment and domain information
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein Back     alignment and domain information
>cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>cd08442 PBP2_YofA_SoxR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein Back     alignment and domain information
>cd08466 PBP2_LeuO The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PLN02245 ATP phosphoribosyl transferase Back     alignment and domain information
>cd08463 PBP2_DntR_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional Back     alignment and domain information
>TIGR00035 asp_race aspartate racemase Back     alignment and domain information
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily [] Back     alignment and domain information
>PRK12679 cbl transcriptional regulator Cbl; Reviewed Back     alignment and domain information
>cd08419 PBP2_CbbR_RubisCO_like The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK09791 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd08440 PBP2_LTTR_like_4 TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08462 PBP2_NodD The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth [] Back     alignment and domain information
>cd08434 PBP2_GltC_like The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08435 PBP2_GbpR The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional Back     alignment and domain information
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A Back     alignment and domain information
>cd08429 PBP2_NhaR The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold Back     alignment and domain information
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12682 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>cd08469 PBP2_PnbR The C-terminal substrate binding domain of LysR-type transcriptional regulator PnbR, which is involved in regulating the pnb genes encoding enzymes for 4-nitrobenzoate catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2 Back     alignment and domain information
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane Back     alignment and domain information
>CHL00180 rbcR LysR transcriptional regulator; Provisional Back     alignment and domain information
>cd08460 PBP2_DntR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional Back     alignment and domain information
>cd08413 PBP2_CysB_like The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold Back     alignment and domain information
>PRK12684 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>cd08461 PBP2_DntR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08420 PBP2_CysL_like C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold Back     alignment and domain information
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd08414 PBP2_LTTR_aromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold Back     alignment and domain information
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional Back     alignment and domain information
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK10200 putative racemase; Provisional Back     alignment and domain information
>cd08415 PBP2_LysR_opines_like The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08464 PBP2_DntR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08444 PBP2_Cbl The C-terminal substrate binding domain of LysR-type transcriptional regulator Cbl, which is required for expression of sulfate starvation-inducible (ssi) genes, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional Back     alignment and domain information
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional Back     alignment and domain information
>PRK09860 putative alcohol dehydrogenase; Provisional Back     alignment and domain information
>cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold Back     alignment and domain information
>cd08441 PBP2_MetR The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold Back     alignment and domain information
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ Back     alignment and domain information
>cd08448 PBP2_LTTR_aromatics_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold Back     alignment and domain information
>PRK12683 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>PRK10837 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information
>cd08425 PBP2_CynR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08430 PBP2_IlvY The C-terminal substrate binding of LysR-type transcriptional regulator IlvY, which activates the expression of ilvC gene that encoding acetohydroxy acid isomeroreductase for the biosynthesis of branched amino acids; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08456 PBP2_LysR The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold Back     alignment and domain information
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>TIGR00070 hisG ATP phosphoribosyltransferase Back     alignment and domain information
>cd08416 PBP2_MdcR The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08451 PBP2_BudR The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold Back     alignment and domain information
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd08427 PBP2_LTTR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea Back     alignment and domain information
>PRK15454 ethanol dehydrogenase EutG; Provisional Back     alignment and domain information
>cd08423 PBP2_LTTR_like_6 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway Back     alignment and domain information
>cd08457 PBP2_OccR The C-terminal substrate-domain of LysR-type transcriptional regulator, OccR, involved in the catabolism of octopine, contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd08458 PBP2_NocR The C-terminal substrate-domain of LysR-type transcriptional regulator, NocR, involved in the catabolism of nopaline, contains the type 2 periplasmic binding fold Back     alignment and domain information
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator Back     alignment and domain information
>cd08465 PBP2_ToxR The C-terminal substrate binding domain of LysR-type transcriptional regulator ToxR regulates the expression of the toxoflavin biosynthesis genes; contains the type 2 periplasmic bindinig fold Back     alignment and domain information
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional Back     alignment and domain information
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism Back     alignment and domain information
>PRK12681 cysB transcriptional regulator CysB; Reviewed Back     alignment and domain information
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor Back     alignment and domain information
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like Back     alignment and domain information
>cd08453 PBP2_IlvR The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold Back     alignment and domain information
>cd08450 PBP2_HcaR The C-terminal substrate binding domain of LysR-type transcriptional regulator HcaR in involved in 3-phenylpropionic acid catabolism, contains the type2 periplasmic binding fold Back     alignment and domain information
>cd08443 PBP2_CysB The C-terminal substrate domain of LysR-type transcriptional regulator CysB contains type 2 periplasmic binding fold Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>PRK09508 leuO leucine transcriptional activator; Reviewed Back     alignment and domain information
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 Back     alignment and domain information
>PRK15421 DNA-binding transcriptional regulator MetR; Provisional Back     alignment and domain information
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional Back     alignment and domain information
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>TIGR02638 lactal_redase lactaldehyde reductase Back     alignment and domain information
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PRK12680 transcriptional regulator CysB-like protein; Reviewed Back     alignment and domain information
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability Back     alignment and domain information
>cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11482 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08446 PBP2_Chlorocatechol The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>PRK10677 modA molybdate transporter periplasmic protein; Provisional Back     alignment and domain information
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD) Back     alignment and domain information
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate Back     alignment and domain information
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria Back     alignment and domain information
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins Back     alignment and domain information
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional Back     alignment and domain information
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) Back     alignment and domain information
>PRK10094 DNA-binding transcriptional activator AllS; Provisional Back     alignment and domain information
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C Back     alignment and domain information
>PRK11062 nhaR transcriptional activator NhaR; Provisional Back     alignment and domain information
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like Back     alignment and domain information
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional Back     alignment and domain information
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein Back     alignment and domain information
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process Back     alignment and domain information
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation Back     alignment and domain information
>PRK07475 hypothetical protein; Provisional Back     alignment and domain information
>cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase Back     alignment and domain information
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional Back     alignment and domain information
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional Back     alignment and domain information
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family Back     alignment and domain information
>PRK11074 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) Back     alignment and domain information
>cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional Back     alignment and domain information
>PRK13348 chromosome replication initiation inhibitor protein; Provisional Back     alignment and domain information
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK09423 gldA glycerol dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query753
4f11_A433 Crystal Structure Of The Extracellular Domain Of Hu 4e-11
3mq4_A481 Metabotropic Glutamate Receptor Mglur7 Complexed Wi 6e-07
2e4z_A501 Crystal Structure Of The Ligand-Binding Region Of T 8e-07
3kg2_A823 Ampa Subtype Ionotropic Glutamate Receptor In Compl 8e-06
3lmk_A492 Ligand Binding Domain Of Metabotropoc Glutamate Rec 9e-06
3sm9_A479 Crystal Structure Of Metabotropic Glutamate Recepto 7e-05
2e4u_A555 Crystal Structure Of The Extracellular Region Of Th 1e-04
3ks9_A496 Metabotropic Glutamate Receptor Mglur1 Complexed Wi 2e-04
1ewk_A490 Crystal Structure Of Metabotropic Glutamate Recepto 2e-04
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Gaba(B) Receptor Gbr2 Length = 433 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 38/286 (13%)
Query: 55  ISFFETSPALS-PTEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFIS 113
           +SF  T+P L+   ++P+F R   +D+    AI  +L+++ W  V  + +D    +   +
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRN 172
Query: 114 FLVDELQENDIRISHMSKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVA 173
            L   L   DI IS                 + KL     R+ +   +  +A+++F    
Sbjct: 173 DLTGVLYGEDIEISDTESFSNDP-----CTSVKKLKGNDVRIILGQFDQNMAAKVFCCAY 227
Query: 174 KNGMMSKGYTWIVTACL-----------SNSLNVLDSEVIDSMEGVLGVRSHLPKSKELG 222
           +  M    Y WI+               +NS   L   ++ +MEG +GV      SK++ 
Sbjct: 228 EENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIK 287
Query: 223 L--------FDRRWKSKLHSMKPNSSVTEINISGLWAYDTIFALAKAVEKXXXXXXXXXX 274
                    ++R + +K   + P+         G +AYD I+ +AK +++          
Sbjct: 288 TISGKTPQQYEREYNNKRSGVGPSK------FHG-YAYDGIWVIAKTLQRAMETLHASSR 340
Query: 275 XXXXXXESTTDFGSLGFSRIGHILCNQILNTQFKGLSGEFHLVNGQ 320
                  + TD        +G I+ N +  T F G++G+    NG+
Sbjct: 341 HQRIQDFNYTD------HTLGRIILNAMNETNFFGVTGQVVFRNGE 380
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With Ly3414 Antagonist Length = 481 Back     alignment and structure
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The Group Iii Metabotropic Glutamate Receptor Length = 501 Back     alignment and structure
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 Back     alignment and structure
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor Mglur5 Complexed With Glutamate Length = 492 Back     alignment and structure
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3 Precursor In Presence Of Ly341495 Antagonist Length = 479 Back     alignment and structure
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group Ii Metabotropic Glutamate Receptor Complexed With L-glutamate Length = 555 Back     alignment and structure
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With Ly341495 Antagonist Length = 496 Back     alignment and structure
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor Subtype 1 Complexed With Glutamate Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query753
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 1e-128
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 9e-74
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 8e-64
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 8e-59
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 3e-57
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 3e-57
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 4e-56
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 1e-51
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 1e-50
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 5e-49
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 3e-41
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 4e-23
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 6e-23
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 7e-22
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 1e-21
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 9e-20
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 1e-19
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 4e-19
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 1e-18
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 2e-18
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 1e-17
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 1e-17
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 2e-17
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 7e-17
3hv1_A268 Polar amino acid ABC uptake transporter substrate 7e-16
3del_B242 Arginine binding protein; alpha and beta protein ( 9e-16
3qax_A268 Probable ABC transporter arginine-binding protein; 1e-15
3k4u_A245 Binding component of ABC transporter; structural g 2e-15
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 2e-15
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 2e-15
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 1e-14
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 1e-14
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 2e-14
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 2e-14
3kzg_A237 Arginine 3RD transport system periplasmic binding 3e-14
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 8e-14
2o1m_A258 Probable amino-acid ABC transporter extracellular- 1e-13
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 1e-13
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 2e-13
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 2e-13
2yln_A283 Putative ABC transporter, periplasmic binding Pro 1e-12
4eq9_A246 ABC transporter substrate-binding protein-amino A 2e-12
3tql_A227 Arginine-binding protein; transport and binding pr 3e-12
3lop_A364 Substrate binding periplasmic protein; protein str 6e-12
2q88_A257 EHUB, putative ABC transporter amino acid-binding 6e-12
3sg0_A386 Extracellular ligand-binding receptor; structural 2e-10
3h5l_A419 Putative branched-chain amino acid ABC transporter 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
3hut_A358 Putative branched-chain amino acid ABC transporter 6e-10
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 2e-09
3lkb_A392 Probable branched-chain amino acid ABC transporter 2e-09
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 5e-09
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 4e-04
3snr_A362 Extracellular ligand-binding receptor; structural 6e-09
1usg_A346 Leucine-specific binding protein; leucine-binding 1e-08
3ipc_A356 ABC transporter, substrate binding protein (amino; 4e-08
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 1e-07
4evq_A375 Putative ABC transporter subunit, substrate-bindi 1e-07
3i45_A387 Twin-arginine translocation pathway signal protei; 2e-06
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 4e-06
3n0w_A379 ABC branched chain amino acid family transporter, 5e-06
4f06_A371 Extracellular ligand-binding receptor; PSI-biology 2e-05
3td9_A366 Branched chain amino acid ABC transporter, peripl 5e-05
1pea_A385 Amidase operon; gene regulator, receptor, binding 1e-04
3n0x_A374 Possible substrate binding protein of ABC transpo 1e-04
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 7e-04
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
 Score =  401 bits (1030), Expect = e-128
 Identities = 122/796 (15%), Positives = 266/796 (33%), Gaps = 118/796 (14%)

Query: 12  DCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPF 71
           +   +  A        V AI G     +   +        V  I+        +   HPF
Sbjct: 45  NSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITP----SFPTDGTHPF 100

Query: 72  FIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRIS--HM 129
            I++  +      A+ ++++ + W +   +Y+  + G   +  ++D   E   +++  ++
Sbjct: 101 VIQMRPD---LKGALLSLIEYYQWDKFAYLYDS-DRGLSTLQAVLDSAAEKKWQVTAINV 156

Query: 130 SKIPTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTAC 189
             I    +D         L   + R  I+       + +   V   G   KGY +I+   
Sbjct: 157 GNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANL 216

Query: 190 LSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEINISGL 249
                ++L  +       V G +        +  F  RW +      P +    I  +  
Sbjct: 217 GFTDGDLLKIQ--FGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSA 274

Query: 250 WAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKG 309
             YD +  + +A    L      I    N  +   +         G  +   +   Q +G
Sbjct: 275 LTYDAVQVMTEAFRN-LRKQRIEISRRGNAGDCLAN--PAVPWGQGVEIERALKQVQVEG 331

Query: 310 LSGEFHLV-NGQLESSVFEIVNVIGTG-RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGD 367
           LSG      NG+  +    I+ +   G R +GYW+    +  T D               
Sbjct: 332 LSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED-------DTSGLEQK 384

Query: 368 STIAPTGWAIPSLVVGTPVRLGFPQFLSVREDGDL--NKTTYTGFCMEIFNATLEIVEEK 425
           + +  T    P              ++ ++ +         Y G+C+++     +     
Sbjct: 385 TVVVTTILESP--------------YVMMKANHAALAGNERYEGYCVDLAAEIAKH---- 426

Query: 426 LGMKIHPQLVPYEDENGEMAGT--YDELLYQIKLKKFDAVVGDISIVASRTDYVEFTLPY 483
            G K    +V         A T  ++ ++ ++   K D  +  ++I   R + ++F+ P+
Sbjct: 427 CGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPF 486

Query: 484 SESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLALVV------------------------ 519
              G+++++   + ++  ++ FL P  +++W+ +V                         
Sbjct: 487 MSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEE 546

Query: 520 ----------KDCSKFVLVIWLWLAF-ILMQ----------------------------S 540
                     +  ++F +   LW +    MQ                            S
Sbjct: 547 FEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISS 606

Query: 541 YTASLSSILTVDQLEPTFADLKKLRTESHF-VGFQSGSFVEDFLVKQLNFSRNQ------ 593
           YTA+L++ LTV+++       + L  ++    G       ++F  +      ++      
Sbjct: 607 YTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMR 666

Query: 594 -TRPLSNFGEYKEALSNGSRKGGVSAIFEEIPYIKVFLKKYSSKYTTAGPIYRTDGLGFA 652
              P        E ++   +  G  A   E    +   ++        G    + G G A
Sbjct: 667 SAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIA 726

Query: 653 FAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGG 712
             K S L +  + A+L + E    +D+++ K++ +             ++S+L   N  G
Sbjct: 727 TPKGSSLGTPVNLAVLKLSEQ-GLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAG 785

Query: 713 LFIIVGIATLLALLIS 728
           +F I+     LA+L++
Sbjct: 786 VFYILVGGLGLAMLVA 801
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433 Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395 Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393 Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384 Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376 Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389 Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364 Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384 Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479 Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Length = 268 Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} Length = 242 Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Length = 268 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245 Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Length = 234 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Length = 226 Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Length = 229 Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Length = 237 Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Length = 271 Back     alignment and structure
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Length = 258 Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Length = 239 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Length = 267 Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239 Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Length = 283 Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Length = 246 Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} Length = 227 Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364 Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Length = 257 Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386 Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Length = 419 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Length = 368 Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Length = 392 Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Length = 232 Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Length = 232 Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Length = 346 Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Length = 356 Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Length = 391 Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Length = 375 Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Length = 387 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Length = 291 Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Length = 379 Back     alignment and structure
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Length = 371 Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Length = 366 Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Length = 385 Back     alignment and structure
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Length = 374 Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Length = 375 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query753
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 100.0
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 100.0
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 100.0
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 100.0
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 100.0
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 100.0
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 100.0
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 100.0
4gpa_A389 Glutamate receptor 4; PBP fold, ligand-gated ION c 100.0
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 100.0
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 100.0
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 100.0
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 100.0
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 100.0
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 100.0
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 100.0
4f06_A371 Extracellular ligand-binding receptor; PSI-biology 100.0
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 100.0
3td9_A366 Branched chain amino acid ABC transporter, peripl 100.0
3h5l_A419 Putative branched-chain amino acid ABC transporter 100.0
3n0w_A379 ABC branched chain amino acid family transporter, 100.0
3i45_A387 Twin-arginine translocation pathway signal protei; 100.0
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 99.98
4evq_A375 Putative ABC transporter subunit, substrate-bindi 99.97
3hut_A358 Putative branched-chain amino acid ABC transporter 99.97
3ipc_A356 ABC transporter, substrate binding protein (amino; 99.97
1usg_A346 Leucine-specific binding protein; leucine-binding 99.97
4gnr_A353 ABC transporter substrate-binding protein-branche 99.97
3n0x_A374 Possible substrate binding protein of ABC transpo 99.97
3lop_A364 Substrate binding periplasmic protein; protein str 99.97
3lkb_A392 Probable branched-chain amino acid ABC transporter 99.97
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 99.96
3sg0_A386 Extracellular ligand-binding receptor; structural 99.96
3snr_A362 Extracellular ligand-binding receptor; structural 99.96
1pea_A385 Amidase operon; gene regulator, receptor, binding 99.95
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 99.94
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 99.94
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 99.93
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 99.92
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 99.92
3k4u_A245 Binding component of ABC transporter; structural g 99.92
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 99.91
2h4a_A325 YRAM (HI1655); perplasmic binding protein, lipopro 99.91
3kzg_A237 Arginine 3RD transport system periplasmic binding 99.91
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 99.91
3ckm_A327 YRAM (HI1655), LPOA; periplasmic-binding protein, 99.91
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 99.91
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 99.9
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 99.9
3hv1_A268 Polar amino acid ABC uptake transporter substrate 99.9
3del_B242 Arginine binding protein; alpha and beta protein ( 99.9
3tql_A227 Arginine-binding protein; transport and binding pr 99.89
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 99.89
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 99.89
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 99.89
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 99.89
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 99.89
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 99.89
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 99.89
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 99.88
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 99.88
4eq9_A246 ABC transporter substrate-binding protein-amino A 99.88
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 99.87
2vha_A287 Periplasmic binding transport protein; periplasmic 99.87
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 99.86
2q88_A257 EHUB, putative ABC transporter amino acid-binding 99.86
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 99.86
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 99.85
2yln_A283 Putative ABC transporter, periplasmic binding Pro 99.85
3qax_A268 Probable ABC transporter arginine-binding protein; 99.85
1xt8_A292 Putative amino-acid transporter periplasmic solut 99.85
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 99.85
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 99.73
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 98.91
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 98.87
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 98.83
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 98.23
3uif_A348 Sulfonate ABC transporter, periplasmic sulfonate- 98.06
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 98.06
3qsl_A346 Putative exported protein; unknown, structural gen 97.95
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 97.89
3brq_A296 HTH-type transcriptional regulator ASCG; transcrip 97.89
2qu7_A288 Putative transcriptional regulator; structural gen 97.88
2h3h_A313 Sugar ABC transporter, periplasmic sugar-binding p 97.87
1dbq_A289 Purine repressor; transcription regulation, DNA-bi 97.84
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 97.82
2f5x_A312 BUGD; periplasmic binding protein, transport prote 97.8
2h0a_A276 TTHA0807, transcriptional regulator; repressor, st 97.77
3rot_A297 ABC sugar transporter, periplasmic sugar binding; 97.72
3ksm_A276 ABC-type sugar transport system, periplasmic COMP; 97.72
2qpq_A301 Protein BUG27; alpha/beta domain, venus flytrap, t 97.68
2dvz_A314 BUGE, putative exported protein; periplamsic bindi 97.68
2rjo_A332 Twin-arginine translocation pathway signal protei; 97.65
3h75_A350 Periplasmic sugar-binding domain protein; protein 97.64
3dbi_A338 Sugar-binding transcriptional regulator, LACI FAM; 97.63
3gv0_A288 Transcriptional regulator, LACI family; transcript 97.61
2o20_A332 Catabolite control protein A; CCPA, transcriptiona 97.6
3d8u_A275 PURR transcriptional regulator; APC91343.1, vibrio 97.6
2fep_A289 Catabolite control protein A; CCPA, transcriptiona 97.59
1tjy_A316 Sugar transport protein; protein-ligand complex, s 97.59
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 97.59
2iks_A293 DNA-binding transcriptional dual regulator; escher 97.56
3brs_A289 Periplasmic binding protein/LACI transcriptional; 97.56
3k4h_A292 Putative transcriptional regulator; structural gen 97.56
3o74_A272 Fructose transport system repressor FRUR; dual tra 97.54
2rgy_A290 Transcriptional regulator, LACI family; 11011J, NY 97.54
3l49_A291 ABC sugar (ribose) transporter, periplasmic substr 97.53
2fn9_A290 Ribose ABC transporter, periplasmic ribose-bindin; 97.53
3c3k_A285 Alanine racemase; structural genomics, protein str 97.51
3d02_A303 Putative LACI-type transcriptional regulator; peri 97.51
2fvy_A309 D-galactose-binding periplasmic protein; periplasm 97.48
3hcw_A295 Maltose operon transcriptional repressor; RNA-bind 97.48
3egc_A291 Putative ribose operon repressor; structural genom 97.48
2hsg_A332 Glucose-resistance amylase regulator; CCPA, transc 97.44
3clk_A290 Transcription regulator; 11017J, PSI-II, NYSGXRC, 97.43
3ctp_A330 Periplasmic binding protein/LACI transcriptional; 97.42
1qpz_A340 PURA, protein (purine nucleotide synthesis repress 97.42
3bbl_A287 Regulatory protein of LACI family; protein structu 97.42
2vk2_A306 YTFQ, ABC transporter periplasmic-binding protein 97.41
2x7x_A325 Sensor protein; transferase, sensor histidine kina 97.39
2ioy_A283 Periplasmic sugar-binding protein; ribose binding 97.39
3l6u_A293 ABC-type sugar transport system periplasmic compo; 97.39
3kke_A303 LACI family transcriptional regulator; structural 97.37
3o1i_D304 Periplasmic protein TORT; ligand free, two compone 97.34
3gyb_A280 Transcriptional regulators (LACI-family transcript 97.29
4ddd_A327 Immunogenic protein; ssgcid, structural genomics, 97.23
3qk7_A294 Transcriptional regulators; structural genomics, N 97.2
3k9c_A289 Transcriptional regulator, LACI family protein; PS 97.19
3e3m_A355 Transcriptional regulator, LACI family; structural 97.16
3kjx_A344 Transcriptional regulator, LACI family; LACL famil 97.15
3gbv_A304 Putative LACI-family transcriptional regulator; NY 97.14
8abp_A306 L-arabinose-binding protein; binding proteins; HET 97.13
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 97.11
3tb6_A298 Arabinose metabolism transcriptional repressor; tr 97.11
3jy6_A276 Transcriptional regulator, LACI family; NYSGXRC, P 97.1
3lft_A295 Uncharacterized protein; ABC, ATPase, cassette, L- 97.1
3m9w_A313 D-xylose-binding periplasmic protein; xylose bindi 97.04
2qh8_A302 Uncharacterized protein; conserved domain protein, 96.99
3bil_A348 Probable LACI-family transcriptional regulator; st 96.96
1jx6_A342 LUXP protein; protein-ligand complex, signaling pr 96.96
3cs3_A277 Sugar-binding transcriptional regulator, LACI FAM; 96.95
3h5o_A339 Transcriptional regulator GNTR; transcription regu 96.88
3g85_A289 Transcriptional regulator (LACI family); transcrip 96.88
3hs3_A277 Ribose operon repressor; PSI-II, NYSGXRC, periplas 96.88
1zbm_A280 Hypothetical protein AF1704; alpha-beta protein, s 96.8
1byk_A255 Protein (trehalose operon repressor); LACI family, 96.79
2dri_A271 D-ribose-binding protein; sugar transport; HET: RI 96.77
3huu_A305 Transcription regulator like protein; PSI-II, NYSG 96.76
3ixl_A240 Amdase, arylmalonate decarboxylase; enantioselecti 96.73
2g29_A417 Nitrate transport protein NRTA; solute-binding pro 96.73
3e61_A277 Putative transcriptional repressor of ribose OPER; 96.7
1gud_A288 ALBP, D-allose-binding periplasmic protein; peripl 96.62
3jvd_A333 Transcriptional regulators; structural genomics, P 96.51
2fqx_A318 Membrane lipoprotein TMPC; ABC transport system, l 96.49
3uug_A330 Multiple sugar-binding periplasmic receptor CHVE; 96.38
3miz_A301 Putative transcriptional regulator protein, LACI f 96.35
1jye_A349 Lactose operon repressor; gene regulation, protein 96.34
2zzv_A361 ABC transporter, solute-binding protein; periplasm 96.23
1us5_A314 Putative GLUR0 ligand binding core; receptor, memb 96.15
3ho7_A232 OXYR; beta-alpha-barrels, DNA-binding, transcripti 95.93
3lkv_A302 Uncharacterized conserved domain protein; ATPase b 95.9
3jv9_A219 OXYR, transcriptional regulator, LYSR family; LYSR 95.9
4ab5_A222 Transcriptional regulator, LYSR family; transcript 95.78
4fe7_A412 Xylose operon regulatory protein; HTH_ARAC, helix- 95.68
3h5t_A366 Transcriptional regulator, LACI family; DNA-depend 95.55
2pfz_A301 Putative exported protein; extracytoplasmic solute 95.45
2pfy_A301 Putative exported protein; extracytoplasmic solute 95.34
3oxn_A241 Putative transcriptional regulator, LYSR family; s 95.27
1atg_A231 MODA, periplasmic molybdate-binding protein; tungs 95.25
1nh8_A304 ATP phosphoribosyltransferase; prtase, de novo His 95.04
2hqb_A296 Transcriptional activator of COMK gene; berkeley s 95.04
2xed_A273 Putative maleate isomerase; nicotinic acid catabol 94.92
3r26_A237 Molybdate-binding periplasmic protein; protein bin 94.89
2hzl_A365 Trap-T family sorbitol/mannitol transporter, perip 94.79
3fzv_A306 Probable transcriptional regulator; LYSR, structur 94.77
2i49_A429 Bicarbonate transporter; alpha-beta protein, C-cla 94.76
4esw_A342 Pyrimidine biosynthesis enzyme THI13; thiamin pyri 94.51
2dgd_A223 223AA long hypothetical arylmalonate decarboxylas; 94.42
3gzg_A253 Molybdate-binding periplasmic protein; permease; m 94.41
2hxr_A238 HTH-type transcriptional regulator CYNR; CYNR tran 94.39
1xs5_A241 29 kDa protein, membrane lipoprotein TPN32; peripl 94.35
2ql3_A209 Probable transcriptional regulator, LYSR family P; 94.25
1sw5_A275 Osmoprotection protein (PROX); binding-protein, co 94.06
2esn_A310 Probable transcriptional regulator; PA0477, APC582 93.98
3fxq_A305 LYSR type regulator of TSAMBCD; transcriptional re 93.9
2y7p_A218 LYSR-type regulatory protein; transcription regula 93.62
2fyi_A228 HTH-type transcriptional regulator CBL; Lys-R fami 93.61
1al3_A324 Cys regulon transcriptional activator CYSB; LYSR f 93.17
3s99_A356 Basic membrane lipoprotein; ssgcid, structural gen 93.05
3qi7_A371 Putative transcriptional regulator; periplasmic bi 92.99
1h3d_A299 ATP-phosphoribosyltransferase; hisitidine biosynth 92.87
4ef1_A246 Pheromone COB1/lipoprotein, YAEC family; periplasm 92.01
2h9b_A312 HTH-type transcriptional regulator BENM; LTTR, tra 91.54
2xwv_A312 Sialic acid-binding periplasmic protein SIAP; tran 91.41
3ox4_A383 Alcohol dehydrogenase 2; iron, NAD, oxidoreductase 91.37
2vd3_A289 ATP phosphoribosyltransferase; metal-binding, glyc 91.23
1ixc_A294 CBNR, LYSR-type regulatory protein; long alpha hel 91.23
2de3_A365 Dibenzothiophene desulfurization enzyme B; alpha-b 91.11
2h98_A313 HTH-type transcriptional regulator CATM; BENM, LTT 91.09
1i6a_A219 OXYR, hydrogen peroxide-inducible genes activator; 91.0
3bfj_A387 1,3-propanediol oxidoreductase; opportunistic path 90.77
1uth_A315 LYSR-type regulatory protein; transcription regula 90.59
3kos_A219 HTH-type transcriptional activator AMPR; alpha-bet 89.79
1twy_A290 ABC transporter, periplasmic substrate-binding PR; 89.65
3l6g_A256 Betaine ABC transporter permease and substrate BI 89.25
1p99_A295 Hypothetical protein PG110; structural genomics, P 89.22
3onm_A238 Transcriptional regulator LRHA; LYSR, ROVM, transc 89.19
2rin_A298 Putative glycine betaine-binding ABC transporter p 88.8
1r9l_A309 Glycine betaine-binding periplasmic protein; perip 88.38
3k6v_A354 Solute-binding protein MA_0280; MODA, molybdate, p 88.24
2hpg_A327 ABC transporter, periplasmic substrate-binding pro 88.1
3hn0_A283 Nitrate transport protein; ABC transporter, struct 87.83
1ryo_A327 Serotransferrin; iron transport, metal transport; 87.74
1rrm_A386 Lactaldehyde reductase; structural genomics, dehyd 87.71
1jfl_A228 Aspartate racemase; alpha-beta structure, HOMO-dim 87.32
1vlj_A407 NADH-dependent butanol dehydrogenase; TM0820, stru 86.99
3tmg_A280 Glycine betaine, L-proline ABC transporter, glycin 86.81
2zsk_A226 PH1733, 226AA long hypothetical aspartate racemase 86.56
2czl_A272 Hypothetical protein TTHA1568; conserved hypotheti 86.37
2q5c_A196 NTRC family transcriptional regulator; structural 86.37
1o2d_A371 Alcohol dehydrogenase, iron-containing; TM0920, st 86.17
2pju_A225 Propionate catabolism operon regulatory protein; s 85.94
2eq5_A228 228AA long hypothetical hydantoin racemase; struct 85.86
3cij_A295 UPF0100 protein AF_0094; archaeal periplasmic bind 85.42
3r6u_A284 Choline-binding protein; substrate binding protein 85.3
2vpn_A316 Periplasmic substrate binding protein; ectoine, hy 84.88
3cfx_A296 UPF0100 protein MA_0280; ABC transporter, binding 84.33
1z7m_E208 ATP phosphoribosyltransferase; ATP-PRT, histidine 83.66
2gzm_A267 Glutamate racemase; enzyme, isomerase; HET: DGL; 1 83.39
2xxp_A 398 CPS2A; replication, peptidoglycan, LCP, LYTR; HET: 83.06
3uhj_A387 Probable glycerol dehydrogenase; structural genomi 83.04
3tqw_A240 Methionine-binding protein; transport and binding 82.73
3hhf_B213 Transcriptional regulator, LYSR family; transcript 82.72
3cfz_A292 UPF0100 protein MJ1186; ABC transporter, binding p 82.29
3k2d_A237 ABC-type metal ION transport system, periplasmic; 81.79
2jfn_A285 Glutamate racemase; cell WALL, isomerase, cell sha 81.12
3isp_A303 HTH-type transcriptional regulator RV1985C/MT2039; 80.31
3ce9_A354 Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin 80.09
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=9e-83  Score=757.21  Aligned_cols=683  Identities=17%  Similarity=0.282  Sum_probs=564.8

Q ss_pred             CCC-ChHHHHHHHHHHHhcCCeEEEEcCCCCCcHHHHHHhhccCCccEEeecCCCCCCCCCCCCceEEEecCcHHHHHHH
Q 037761            8 KQF-KDCGKLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSPTEHPFFIRVTQNDSLQVKAI   86 (753)
Q Consensus         8 d~~-~~~~a~~~a~~Li~~~~V~aviG~~~s~~~~av~~i~~~~~vP~is~~a~~~~l~~~~~~~~fr~~p~~~~~~~a~   86 (753)
                      +++ ++..|+.++|+++++ +|.|||||.+|+++.+++++++.+++|+|+++  ++..  ..++|+||+.|+   ++.++
T Consensus        41 ~~~~~~~~a~~~~~~l~~~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~  112 (823)
T 3kg2_A           41 LEVANSFAVTNAFCSQFSR-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGAL  112 (823)
T ss_dssp             ECTTCHHHHHHHHHHHHHT-TCSEEEECCCTTTHHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHH
T ss_pred             cCCCChHHHHHHHHHHHhc-CcEEEEcCCChhHHHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHH
Confidence            677 899999999999987 89999999999999999999999999999973  3322  467899999999   88999


Q ss_pred             HHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC--CchhhHHHHHHHHhcCCccEEEEEeChHH
Q 037761           87 SAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS--AEDFQISKELSKLSTMQTRVFIVHMNTAL  164 (753)
Q Consensus        87 ~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~vIi~~~~~~~  164 (753)
                      +++++++||+||++|+ |+++|.+..+.+.+++++.|+||+..+.++.+  .++.|++.++.+|+++++|+|+++++.++
T Consensus       113 ~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~  191 (823)
T 3kg2_A          113 LSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDK  191 (823)
T ss_dssp             HHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHH
T ss_pred             HHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHH
Confidence            9999999999999999 78899999999999999999999999877654  23679999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEEeCCCChhhhHHHHHHHHhhCCCCCCCCcccc
Q 037761          165 ASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTEI  244 (753)
Q Consensus       165 ~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~  244 (753)
                      +..++++|+++||..++++||.++.+......  ....+...|++++..+.++.|.+++|.++|++++++.++......+
T Consensus       192 ~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  269 (823)
T 3kg2_A          192 VNDIVDQVITIGKHVKGYHYIIANLGFTDGDL--LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATI  269 (823)
T ss_dssp             HHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC--SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCC
T ss_pred             HHHHHHHHHHcCcCCCCeEEEEecccccccch--HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCcccc
Confidence            99999999999998889999999864433222  1222345568888888888999999999999999987665555568


Q ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC--ccccchHHHHHHHHhcccccceeeEEe-eCCcc
Q 037761          245 NISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSL--GFSRIGHILCNQILNTQFKGLSGEFHL-VNGQL  321 (753)
Q Consensus       245 ~~~~~~~ydAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~g~~G~v~f-~~g~~  321 (753)
                      +.+++++||||+++|+|++++.... .....    .....+|...  ..+.+|.+|.++|++++|+|++|.+.| ++|++
T Consensus       270 ~~~a~~~YDAv~~la~Al~~~~~~~-~~~~~----~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~  344 (823)
T 3kg2_A          270 KYTSALTYDAVQVMTEAFRNLRKQR-IEISR----RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKR  344 (823)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTT-CCCCC----SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCB
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhhc-ccccc----CCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcc
Confidence            8899999999999999999984322 11100    0012223322  356789999999999999999999999 89999


Q ss_pred             ceeEEEEEEEeccc-eEEEEeecCCCcccccccCccCCCCceecCCCCCCCCCcccccceEEeeccCCCCcceEEEEEcC
Q 037761          322 ESSVFEIVNVIGTG-RVVGYWTSEKGLTQTLDLTSKNDLKQIIWPGDSTIAPTGWAIPSLVVGTPVRLGFPQFLSVREDG  400 (753)
Q Consensus       322 ~~~~y~i~~~~~~~-~~vg~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~l~v~~~~~~~~~~~~~~~~~~  400 (753)
                      ....|+|+++++++ .+||.|++..++....             +     ......+.+++|++...+||..+.. ..+.
T Consensus       345 ~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~-------------~-----~~~~~~~~~l~v~~~~~~P~~~~~~-~~~~  405 (823)
T 3kg2_A          345 INYTINIMELKTNGPRKIGYWSEVDKMVLTE-------------D-----DTSGLEQKTVVVTTILESPYVMMKA-NHAA  405 (823)
T ss_dssp             CSCEEEEEEECSSCEEEEEEEETTTEEEECC-------------C-----CCSSCCCCCEEEEECCCTTTSEECT-TGGG
T ss_pred             cccEEEEEEEcCCCCeeEEEEcCCCCceecc-------------C-----cccccCCCEEEEEEecCCCcEEEec-Cccc
Confidence            88899999999888 9999999887654321             0     0112223489999976666553311 1122


Q ss_pred             CCCcceeeeeehHHHHHHHHHHHHhcCCccceEEEecCCCCCC---CCCChHHHHHHHHcCcccEEEeeeeeecccceee
Q 037761          401 DLNKTTYTGFCMEIFNATLEIVEEKLGMKIHPQLVPYEDENGE---MAGTYDELLYQIKLKKFDAVVGDISIVASRTDYV  477 (753)
Q Consensus       401 ~~~~~~~~G~~~dll~~ia~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~Di~~~~~~~t~~r~~~~  477 (753)
                      .++++++.|+++||++++++    ++||+++++.++. ..+|.   .|++|++++++|.+|++|++++++++|++|.+.+
T Consensus       406 ~~~~~~~~G~~~dl~~~~a~----~l~~~~~~~~~~~-~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~  480 (823)
T 3kg2_A          406 LAGNERYEGYCVDLAAEIAK----HCGFKYKLTIVGD-GKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVI  480 (823)
T ss_dssp             CCGGGGEESHHHHHHHHHHH----HHTCCEEEEECSS-CCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTE
T ss_pred             cCCCCceEEEHHHHHHHHHH----HcCCcEEEEEccC-CcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeE
Confidence            35788999999999999999    9998877766653 23443   5788999999999999999999999999999999


Q ss_pred             eccccccccceEEEEecccCCCCceeEEEecCccccceee----------------------------------------
Q 037761          478 EFTLPYSESGVTMLVPVKRDNRHNMWIFLKPWTWDLWLAL----------------------------------------  517 (753)
Q Consensus       478 ~fs~p~~~~~~~~~v~~~~~~~~~~~~~~~PF~~~~W~~i----------------------------------------  517 (753)
                      +||.||+.++.++++|++....++++.|++||++.+|+++                                        
T Consensus       481 dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~  560 (823)
T 3kg2_A          481 DFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTN  560 (823)
T ss_dssp             EECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CH
T ss_pred             EeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccc
Confidence            9999999999999999997767789999999999999865                                        


Q ss_pred             -----------------------ccccchhhHHHHHHHHHHHhhhceeeeeeeeEEeeccCCCcCChhHhhhcC-CeEEE
Q 037761          518 -----------------------VVKDCSKFVLVIWLWLAFILMQSYTASLSSILTVDQLEPTFADLKKLRTES-HFVGF  573 (753)
Q Consensus       518 -----------------------p~s~~~R~~~~~w~l~~lvl~~~Y~a~L~s~lt~~~~~~~i~s~~dL~~~~-~~~~~  573 (753)
                                             |++.++|+++++|||++||++++|||+|+|+||.+++.++|+|++||.+++ .++++
T Consensus       561 ~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~  640 (823)
T 3kg2_A          561 EFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGT  640 (823)
T ss_dssp             HHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEEC
T ss_pred             cccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEE
Confidence                                   467789999999999999999999999999999999999999999998754 36788


Q ss_pred             ecCchHHHHHHHhhCCCC-----------CceecCCCHHHHHHHHh-cCCCCCCeeEEEeccccHHHHHhcC-CCCcEEe
Q 037761          574 QSGSFVEDFLVKQLNFSR-----------NQTRPLSNFGEYKEALS-NGSRKGGVSAIFEEIPYIKVFLKKY-SSKYTTA  640 (753)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~-~g~~~~~~~a~~~~~~~~~~~~~~~-~~~l~~~  640 (753)
                      ..++...+++.+ ...+.           .....+.+.+++++++. ++.    .+|++.+...++|+.++. | +++.+
T Consensus       641 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c-~l~~v  714 (823)
T 3kg2_A          641 LDSGSTKEFFRR-SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG----KYAYLLESTMNEYIEQRKPC-DTMKV  714 (823)
T ss_dssp             BSSSHHHHHHHH-CCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTT----SEEEEEEHHHHHHHHTSTTC-CEEEE
T ss_pred             EeCCcHHHHHHh-ccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCC----ceEEEechHHHHHHHhcCCC-ceEEc
Confidence            878888888874 11110           01123468899999996 343    689999999999888877 8 89999


Q ss_pred             CcccccCceEEEEcCCCCCchHhHHHHHHhhhcchHHHHHHHhhcCCCCCCCCcccCCCccCcccccccchhhHHHHHHH
Q 037761          641 GPIYRTDGLGFAFAKDSPLVSHFSQAILLVRENQTRMDRIEKKYFGENVMTPTLARSISSESSSLRAYNFGGLFIIVGIA  720 (753)
Q Consensus       641 ~~~~~~~~~~~~~~k~s~l~~~~n~~i~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~f~il~~g  720 (753)
                      ++.+...++++++||+|||++.||+.|++|+|+| ++++|.++|+.....|............+|+++++.|+|+++++|
T Consensus       715 ~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G-~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g  793 (823)
T 3kg2_A          715 GGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQG-LLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGG  793 (823)
T ss_dssp             SCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTT-HHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHH
T ss_pred             cccccccceeEeecCCChHHHHHHHHHHHHHhCC-cHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999 999999999988788887654332356799999999999999999


Q ss_pred             HHHHHHHHHHHH-hccch
Q 037761          721 TLLALLISERYI-WQKPV  737 (753)
Q Consensus       721 ~~l~~~vf~~~~-~~~~~  737 (753)
                      +++|+++|+.|+ |+++.
T Consensus       794 ~~la~~vf~~E~~~~~~~  811 (823)
T 3kg2_A          794 LGLAMLVALIEFCYKSRA  811 (823)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHcch
Confidence            999999999544 44443
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Back     alignment and structure
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Back     alignment and structure
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus} Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A* Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Back     alignment and structure
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Back     alignment and structure
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae} Back     alignment and structure
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} Back     alignment and structure
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Back     alignment and structure
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Back     alignment and structure
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp} Back     alignment and structure
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis} Back     alignment and structure
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Back     alignment and structure
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Back     alignment and structure
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans} Back     alignment and structure
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis} Back     alignment and structure
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus} Back     alignment and structure
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* Back     alignment and structure
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A* Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli} Back     alignment and structure
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans} Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A* Back     alignment and structure
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum} Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A* Back     alignment and structure
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes} Back     alignment and structure
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Back     alignment and structure
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Back     alignment and structure
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} Back     alignment and structure
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A* Back     alignment and structure
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens} Back     alignment and structure
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Back     alignment and structure
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans} Back     alignment and structure
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Back     alignment and structure
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum} Back     alignment and structure
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Back     alignment and structure
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C Back     alignment and structure
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii} Back     alignment and structure
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Back     alignment and structure
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Back     alignment and structure
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis} Back     alignment and structure
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis} Back     alignment and structure
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* Back     alignment and structure
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis} Back     alignment and structure
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} Back     alignment and structure
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 Back     alignment and structure
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 Back     alignment and structure
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* Back     alignment and structure
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus} Back     alignment and structure
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* Back     alignment and structure
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Back     alignment and structure
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* Back     alignment and structure
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* Back     alignment and structure
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A* Back     alignment and structure
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} Back     alignment and structure
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Back     alignment and structure
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A Back     alignment and structure
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Back     alignment and structure
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis} Back     alignment and structure
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae} Back     alignment and structure
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis} Back     alignment and structure
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A Back     alignment and structure
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A Back     alignment and structure
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Back     alignment and structure
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Back     alignment and structure
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Back     alignment and structure
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A* Back     alignment and structure
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} Back     alignment and structure
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A Back     alignment and structure
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A Back     alignment and structure
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A Back     alignment and structure
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A Back     alignment and structure
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A* Back     alignment and structure
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} Back     alignment and structure
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Back     alignment and structure
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A Back     alignment and structure
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Back     alignment and structure
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP} Back     alignment and structure
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A* Back     alignment and structure
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 Back     alignment and structure
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* Back     alignment and structure
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A Back     alignment and structure
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1 Back     alignment and structure
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1 Back     alignment and structure
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus} Back     alignment and structure
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile} Back     alignment and structure
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A* Back     alignment and structure
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A* Back     alignment and structure
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A* Back     alignment and structure
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A Back     alignment and structure
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* Back     alignment and structure
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum} Back     alignment and structure
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A Back     alignment and structure
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A Back     alignment and structure
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A Back     alignment and structure
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A Back     alignment and structure
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Back     alignment and structure
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A Back     alignment and structure
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A Back     alignment and structure
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1 Back     alignment and structure
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A Back     alignment and structure
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Back     alignment and structure
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis} Back     alignment and structure
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A Back     alignment and structure
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A* Back     alignment and structure
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A Back     alignment and structure
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} Back     alignment and structure
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis} Back     alignment and structure
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Back     alignment and structure
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Back     alignment and structure
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A Back     alignment and structure
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 Back     alignment and structure
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi} Back     alignment and structure
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} Back     alignment and structure
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Back     alignment and structure
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Back     alignment and structure
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Back     alignment and structure
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A Back     alignment and structure
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A* Back     alignment and structure
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A Back     alignment and structure
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans} Back     alignment and structure
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E* Back     alignment and structure
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} Back     alignment and structure
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A* Back     alignment and structure
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Back     alignment and structure
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii} Back     alignment and structure
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus} Back     alignment and structure
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} Back     alignment and structure
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis} Back     alignment and structure
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 753
d1jdpa_401 c.93.1.1 (A:) Hormone binding domain of the atrial 4e-28
d1ewka_477 c.93.1.1 (A:) Metabotropic glutamate receptor subt 6e-28
d1dp4a_425 c.93.1.1 (A:) Hormone binding domain of the atrial 2e-27
d1mqia_260 c.94.1.1 (A:) Glutamate receptor ligand binding co 4e-18
d2a5sa1277 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate 3e-15
d1pb7a_289 c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni 2e-14
d2f34a1246 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li 4e-11
d1qo0a_373 c.93.1.1 (A:) Amide receptor/negative regulator of 3e-10
d1ii5a_226 c.94.1.1 (A:) Glutamate receptor ligand binding co 3e-06
d1lsta_238 c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding 3e-05
d1xt8a1248 c.94.1.1 (A:10-257) Putative amino-acid transporte 2e-04
d1wdna_223 c.94.1.1 (A:) Glutamine-binding protein {Escherich 3e-04
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 4e-28
 Identities = 55/348 (15%), Positives = 112/348 (32%), Gaps = 38/348 (10%)

Query: 15  KLILAVDLLKKFQVQAIIGPQIPAAAPFLVELGEKAQVPIISFFETSPALSP--TEHPFF 72
            L+  V   +  +   I+GP    AA  +  L     +P++S    +       +E+   
Sbjct: 70  SLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHL 129

Query: 73  IRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKI 132
            RV    +   + + A+ ++  W    L+Y D          L    +       H S  
Sbjct: 130 TRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIY 189

Query: 133 PTSAEDFQISKELSKLSTMQTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSN 192
                     +++ +      RV I+  ++     +  +  ++GM S  Y +      ++
Sbjct: 190 SFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNS 249

Query: 193 ---------SLNVLDSEVIDSMEGVLGVRSHLPKSKELGLFDRRWKSKLHSMKPNSSVTE 243
                      +  D E   +   +  V        E   F    KS +     N     
Sbjct: 250 SSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNME-DY 308

Query: 244 INISGLWAYDTIFALAKAVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQIL 303
           +N+     +D I     A+ ++L     S  +                      +  Q  
Sbjct: 309 VNMFVEGFHDAILLYVLALHEVLRA-GYSKKDGGK-------------------IIQQTW 348

Query: 304 NTQFKGLSGEFHLV-NGQLESSVFEIVNVI----GTGRVVGYWTSEKG 346
           N  F+G++G+  +  NG      F ++ +     GT  V+G +  ++G
Sbjct: 349 NRTFEGIAGQVSIDANGDRYGD-FSVIAMTDVEAGTQEVIGDYFGKEG 395
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477 Back     information, alignment and structure
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425 Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Length = 373 Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Length = 226 Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Length = 238 Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Length = 248 Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Length = 223 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query753
d1ewka_477 Metabotropic glutamate receptor subtype 1 {Rat (Ra 100.0
d1dp4a_425 Hormone binding domain of the atrial natriuretic p 100.0
d1jdpa_401 Hormone binding domain of the atrial natriuretic p 100.0
d1usga_346 Leucine-binding protein {Escherichia coli [TaxId: 99.97
d1qo0a_373 Amide receptor/negative regulator of the amidase o 99.97
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.94
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 99.93
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.93
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 99.92
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 99.91
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 99.9
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 99.89
d3ckma1317 YraM C-terminal domain {Haemophilus influenzae [Ta 99.88
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 99.84
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 98.37
d1jyea_271 Lac-repressor (lacR) core (C-terminal domain) {Esc 97.28
d1dbqa_282 Purine repressor (PurR), C-terminal domain {Escher 96.98
d2nzug1275 Glucose-resistance amylase regulator CcpA, C-termi 96.78
d1byka_255 Trehalose repressor, C-terminal domain {Escherichi 96.69
d8abpa_305 L-arabinose-binding protein {Escherichia coli [Tax 96.62
d1jx6a_338 Quorum-sensing signal (autoinducer-2) binding prot 96.62
d2fvya1305 Galactose/glucose-binding protein {Escherichia col 96.53
d1al3a_237 Cofactor-binding fragment of LysR-type protein Cys 96.5
d2dria_271 D-ribose-binding protein {Escherichia coli, strain 96.18
d2fyia1220 LysR-type regulatory protein Cbl {Escherichia coli 95.8
d1us5a_298 Putative GluR0 ligand binding core {Thermus thermo 95.53
d1xs5a_240 Putative lipoprotein (NlpA family) {Treponema pall 95.44
d1guda_288 D-allose-binding protein {Escherichia coli [TaxId: 95.37
d1tjya_316 AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370 93.23
d1vlja_398 NADH-dependent butanol dehydrogenase A (TM0820) {T 92.81
d1rrma_385 Lactaldehyde reductase FucO {Escherichia coli [Tax 91.98
d1h3da1220 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 91.53
d2esna2212 Probable LysR-type transcriptional regulator PA047 91.42
d1o2da_359 Alcohol dehydrogenase TM0920 {Thermotoga maritima 90.88
d1nh8a1210 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 90.4
d1i6aa_212 Hydrogen peroxide-inducible genes LysR-type activa 89.96
d1p99a_255 Putative lipoprotein (NlpA family) {Staphylococcus 88.96
d1utha_219 LysR-type regulatory protein DntR {Burkholderia sp 87.24
d2pjua1186 Propionate catabolism operon regulatory protein Pr 85.54
d1z7me1204 ATP phosphoribosyltransferase (ATP-PRTase, HisG), 83.14
d1jq5a_366 Glycerol dehydrogenase {Bacillus stearothermophilu 81.51
d2qy9a2211 GTPase domain of the signal recognition particle r 81.39
d1sbpa_309 Sulphate-binding protein {Salmonella typhimurium [ 81.34
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.4e-39  Score=351.95  Aligned_cols=327  Identities=19%  Similarity=0.326  Sum_probs=269.5

Q ss_pred             eecCCCChHHHHHHHHHHHh----------------------------cCCeEEEEcCCCCCcHHHHHHhhccCCccEEe
Q 037761            5 LLLKQFKDCGKLILAVDLLK----------------------------KFQVQAIIGPQIPAAAPFLVELGEKAQVPIIS   56 (753)
Q Consensus         5 ~~~d~~~~~~a~~~a~~Li~----------------------------~~~V~aviG~~~s~~~~av~~i~~~~~vP~is   56 (753)
                      +..+++++..|+..+.+++.                            ..+|.|||||.+|.++.+++.++..+++|+|+
T Consensus        70 i~Dtc~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS  149 (477)
T d1ewka_          70 IRDSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIA  149 (477)
T ss_dssp             EEECTTCHHHHHHHHHHHHC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEE
T ss_pred             EEEcCCChHHHHHHHHHHHHhhhcccccccccccccccCCccccccccccceEEEECCCcchhHHHHHHHhhhccCceec
Confidence            44588999999999999984                            34799999999999999999999999999999


Q ss_pred             ecCCCCCCCC-CCCCceEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeeCCcccchHHHHHHHHHhCCeEEEEeeccCCC
Q 037761           57 FFETSPALSP-TEHPFFIRVTQNDSLQVKAISAVLQNFSWHEVVLMYEDTNYGAGFISFLVDELQENDIRISHMSKIPTS  135 (753)
Q Consensus        57 ~~a~~~~l~~-~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~vail~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~  135 (753)
                      ++++++.|++ ..||+|||+.|++..+++++++++++|||++|++|+.+++||....+.|++++++.|+||+..+.++..
T Consensus       150 ~~ats~~lsd~~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~  229 (477)
T d1ewka_         150 YSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSN  229 (477)
T ss_dssp             SSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTT
T ss_pred             cccCCccccccccCCceEEecccchhhHHHHHHHHHHcCCcEEEEEEecchhHHHHHHHHHHHHHHcCcEEEEEeeccCC
Confidence            9999999997 789999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CchhhHHHHHHHHhcC--CccEEEEEeChHHHHHHHHHHHHcCCCCCCEEEEEcCcccccccCCChhHHhhcccEEEEEE
Q 037761          136 AEDFQISKELSKLSTM--QTRVFIVHMNTALASRLFALVAKNGMMSKGYTWIVTACLSNSLNVLDSEVIDSMEGVLGVRS  213 (753)
Q Consensus       136 ~~~~d~~~~l~~l~~~--~~~vIi~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~g~i~~~~  213 (753)
                      .+..++...++++++.  +++|||+++...++..++++|.++||. .++.|++++.|........ .......|.+++..
T Consensus       230 ~~~~~~~~~l~~l~~~~~~~rVIv~~~~~~~~~~ll~~a~~~g~~-g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~  307 (477)
T d1ewka_         230 AGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV-GEFSLIGSDGWADRDEVIE-GYEVEANGGITIKL  307 (477)
T ss_dssp             CCHHHHHHHHHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTCC-SCCEEEECTTTTTCHHHHT-TCHHHHTTCEEEEE
T ss_pred             CchhhHHHHHHHHhhhccCceEEEEecCHHHHHHHHHHHHHcCcc-CCceEEEecccccchhhcc-ccccccCcceEeee
Confidence            7788999999999865  789999999999999999999999997 4578999888875432221 22345677888888


Q ss_pred             eCCCChhhhHH---------------HHHHHHhhCCCCCCCC------------------ccccchhHHHHHHHHHHHHH
Q 037761          214 HLPKSKELGLF---------------DRRWKSKLHSMKPNSS------------------VTEINISGLWAYDTIFALAK  260 (753)
Q Consensus       214 ~~~~~~~~~~F---------------~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ydAv~~~a~  260 (753)
                      ..+..+.+++|               .+.|++.|+|..+...                  ....+.+++++|||||++|+
T Consensus       308 ~~~~i~~f~~~~~~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~  387 (477)
T d1ewka_         308 QSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAH  387 (477)
T ss_dssp             CCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHhcCcccCCCChHHHHHHHHHhCCCcccccccCccccccccchhhcccccccchHHHHHHHHHHHHHH
Confidence            88777776554               4668899988654211                  01235678899999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCCCCccCCCccccchHHHHHHHHhccccccee-eEEe-eCCccceeEEEEEEEec--cc-
Q 037761          261 AVEKILSPINPSIVNPSNPSESTTDFGSLGFSRIGHILCNQILNTQFKGLSG-EFHL-VNGQLESSVFEIVNVIG--TG-  335 (753)
Q Consensus       261 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G-~v~f-~~g~~~~~~y~i~~~~~--~~-  335 (753)
                      ||++++.+....  .       ...|+. ....+|++|.+.|++++|.|++| .|.| ++||+ ...|+|+||+.  ++ 
T Consensus       388 AL~~~~~~~~~~--~-------~~~~~~-~~~~~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~-~~~y~I~n~q~~~~~~  456 (477)
T d1ewka_         388 GLQNMHHALCPG--H-------VGLCDA-MKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANR  456 (477)
T ss_dssp             HHHHHHHHHSTT--C-------SSCCGG-GSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCCEEEEEEEECSSSC
T ss_pred             HHHHHHHhhCCC--C-------CCcccC-CCcCCHHHHHHHHhcCeeECCCCCEEEECCCCCc-cceEEEEEEEECCCCc
Confidence            999985431100  0       111222 12357899999999999999999 5999 99999 68899999983  22 


Q ss_pred             ---eEEEEeecC
Q 037761          336 ---RVVGYWTSE  344 (753)
Q Consensus       336 ---~~vg~~~~~  344 (753)
                         ++||.|++.
T Consensus       457 ~~~~~VG~w~~~  468 (477)
T d1ewka_         457 YDYVHVGTWHEG  468 (477)
T ss_dssp             EEEEEEEEEETT
T ss_pred             EEEEEEEEEeCC
Confidence               899999854
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]} Back     information, alignment and structure
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} Back     information, alignment and structure
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} Back     information, alignment and structure
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]} Back     information, alignment and structure
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure