Citrus Sinensis ID: 037772

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--

MRMASFHSRSSNSNSNGNHPASSFSLLLLFLLLASVSASETVPKVMSKPATGNFDIGPVVPTTPLVTFLERVQESALATFGQKDFDPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGCNGVML

ccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccc

ccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccHHHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHccccHHHHHHHHHcccccHccEEcccccccccccccccccccccccccccEEEEEEEcEEEEEcccccccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccEEEEEEEccccccccHHcHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccEEcccccccHHHHHHHHHHHHcccHHHHcccccccc

mrmasfhsrssnsnsngnhpasSFSLLLLFLLLASVsasetvpkvmskpatgnfdigpvvpttpLVTFLERVQESALatfgqkdfdpklyvdLSLKFDLSAIVTAFHklprnatgsvsipdfKEFMHEYFdgagndlvyaeppdfvpepdgflpkvknpqVRAWALEVHALWKNLSrrvscsvldrpefhtllplpgpvvipgsrfrevyywDSYWvirntsdfttLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWIsngtssqeCQRWKAsnqnnnafasnfvPIWIDLFNSDTCIVEKVRKSFqssgllgaaGIATsltrsgeqwdfpngwapLQHMIVEglgksgsheAKSMAQDIAMRWINTNYVAYKetgamhekynvekcgdiggggeyipqtgfgwsnGVVLAFLEefgwpadlkigcngvml

mrmasfhsrssnsnsngnHPASSFSLLLLFLLLASVSASETVPKVMskpatgnfdigpvVPTTPLVTFLERVQESALatfgqkdfdPKLYVDLSLKFDLSAIVTAFhklprnatgsvsIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLdrpefhtllplpgpvvipgsRFREVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFgwpadlkigcngvml

MRMAsfhsrssnsnsngnhpassfsllllflllasvsasETVPKVMSKPATGNFDIGPVVPTTPLVTFLERVQESALATFGQKDFDPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTllplpgpvvipgSRFREVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKasnqnnnafasnfVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGCNGVML

***********************FSLLLLFLLLASVSASETVPKVMSKPATGNFDIGPVVPTTPLVTFLERVQESALATFGQKDFDPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLG**********AQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGCNGV**

********************ASSFSLLLLFLLLASVSASETVP***********DIGPVVPTTPLVTFLERVQESALATFGQKDFDPKLYVDLSLKFDLSAIVTAFHKLPRNAT*SVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNV*********GEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGCNGVML

*******************PASSFSLLLLFLLLASVSASETVPKVMSKPATGNFDIGPVVPTTPLVTFLERVQESALATFGQKDFDPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGCNGVML

***************NGNHPASSFSLLLLFLLLASVSASETVPKVMSKPATGNFDIGPVVPTTPLVTFLERVQESALATFGQKDFDPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGCNGVML

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		472	2.2.26 [Sep-21-2011]
Q9FWC1		563	Probable trehalase OS=Ory	yes	no	0.658	0.552	0.481	1e-81
Q9SU50		626	Trehalase OS=Arabidopsis	yes	no	0.506	0.381	0.580	6e-78
P32359		555	Trehalase OS=Tenebrio mol	N/A	no	0.480	0.409	0.372	6e-41
P19813		578	Trehalase OS=Oryctolagus	yes	no	0.478	0.391	0.353	9e-38
O43280		583	Trehalase OS=Homo sapiens	yes	no	0.480	0.389	0.357	2e-35
A8J4S9		626	Trehalase OS=Apis mellife	yes	no	0.483	0.364	0.364	2e-34
Q8MMG9		585	Trehalase OS=Pimpla hypoc	N/A	no	0.480	0.388	0.330	2e-34
Q9JLT2		576	Trehalase OS=Mus musculus	yes	no	0.455	0.373	0.351	7e-34
Q9W2M2		596	Trehalase OS=Drosophila m	yes	no	0.483	0.382	0.349	1e-31
P32358		579	Trehalase OS=Bombyx mori	N/A	no	0.457	0.373	0.321	4e-31

>sp\|Q9FWC1\|TRE_ORYSJ Probable trehalase OS=Oryza sativa subsp. japonica GN=Os10g0521000 PE=2 SV=1	Back alignment and function desciption

 Score =  304 bits (778), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 165/343 (48%), Positives = 217/343 (63%), Gaps = 32/343 (9%)

Query: 143 PDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIP 202
           P  + E   ++ +V N  V    ++ H    NLSR  +     RPE  T+       +  
Sbjct: 235 PSLLKEHSFWMSEVHNVAV----MDNHGRVHNLSRYQAMWNKPRPESATIDEEFASKLST 290

Query: 203 GSRFREVYY----------WD--SYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFL 250
            ++  E +Y          WD  S W +R+++D TTL  + I+PVDLN FILK       
Sbjct: 291 AAK--EKFYHQVASTAETGWDFSSRW-MRDSTDMTTLTTSCIIPVDLNTFILK------- 340

Query: 251 MELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQR 310
           ME DI   A+++G++ T+E F +A++AR  AIDSV WN +  QWLDYW+    + Q   +
Sbjct: 341 MEQDIAFFAKLIGESTTSEIFSEASKARHNAIDSVLWNADMEQWLDYWLPTDGNCQGVYQ 400

Query: 311 WKASNQNNNAFASNFVPIWIDLFNS------DTCIVEKVRKSFQSSGLLGAAGIATSLTR 364
           WK+ +QN   FASNFVP+W++  +S      D     +V +S Q SGLL  AGIATSL+ 
Sbjct: 401 WKSISQNRAIFASNFVPLWLNAQHSGLEQFVDEAKSVRVMRSLQKSGLLQPAGIATSLSN 460

Query: 365 SGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYN 424
           +G+QWDFPNGWAPLQH+IVEGL +SGS EA+ +A+DIA RW+ TNY AYK TGAMHEKY+
Sbjct: 461 TGQQWDFPNGWAPLQHLIVEGLLRSGSGEARELAEDIATRWVRTNYDAYKATGAMHEKYD 520

Query: 425 VEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGC 467
           V  CG  GGGGEY PQTGFGWSNGV+L+FL+EFGWP D KI C
Sbjct: 521 VVTCGKSGGGGEYKPQTGFGWSNGVILSFLDEFGWPQDKKIDC 563

Involved in the regulation of trehalose content by hydrolyzing trehalose to glucose.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 8

>sp\|Q9SU50\|TRE1_ARATH Trehalase OS=Arabidopsis thaliana GN=TRE1 PE=2 SV=1	Back alignment and function description

>sp\|P32359\|TREA_TENMO Trehalase OS=Tenebrio molitor PE=2 SV=1	Back alignment and function description

>sp\|P19813\|TREA_RABIT Trehalase OS=Oryctolagus cuniculus GN=TREH PE=1 SV=1	Back alignment and function description

>sp\|O43280\|TREA_HUMAN Trehalase OS=Homo sapiens GN=TREH PE=1 SV=2	Back alignment and function description

>sp\|A8J4S9\|TREA_APIME Trehalase OS=Apis mellifera PE=1 SV=1	Back alignment and function description

>sp\|Q8MMG9\|TREA_PIMHY Trehalase OS=Pimpla hypochondriaca GN=tre1 PE=1 SV=1	Back alignment and function description

>sp\|Q9JLT2\|TREA_MOUSE Trehalase OS=Mus musculus GN=Treh PE=2 SV=1	Back alignment and function description

>sp\|Q9W2M2\|TREA_DROME Trehalase OS=Drosophila melanogaster GN=Treh PE=1 SV=1	Back alignment and function description

>sp\|P32358\|TREA_BOMMO Trehalase OS=Bombyx mori PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		472
255555679		567	alpha,alpha-trehalase, putative [Ricinus	0.603	0.502	0.626	1e-104
224072254		568	predicted protein [Populus trichocarpa]	0.605	0.503	0.613	1e-101
224072252		568	predicted protein [Populus trichocarpa]	0.514	0.427	0.688	1e-100
224058081		565	predicted protein [Populus trichocarpa]	0.514	0.430	0.68	8e-99
297742400		544	unnamed protein product [Vitis vinifera]	0.527	0.457	0.676	1e-98
225426222		565	PREDICTED: trehalase [Vitis vinifera]	0.516	0.431	0.686	1e-98
255564838		566	alpha,alpha-trehalase, putative [Ricinus	0.512	0.427	0.684	6e-96
242035309		586	hypothetical protein SORBIDRAFT_01g03128	0.536	0.431	0.591	2e-88
351723307		557	trehalase 1 GMTRE1 [Glycine max] gi\|4559	0.510	0.432	0.608	3e-87
449452238		577	PREDICTED: probable trehalase-like [Cucu	0.523	0.428	0.631	2e-86

>gi\|255555679\|ref\|XP_002518875.1\| alpha,alpha-trehalase, putative [Ricinus communis] gi\|223541862\|gb\|EEF43408.1\| alpha,alpha-trehalase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/305 (62%), Positives = 230/305 (75%), Gaps = 20/305 (6%)

Query: 174 NLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYY---------WD--SYWVIRNTS 222
           NLSR  +     RPE   L        +  S+ ++ Y          WD  + W +RN+S
Sbjct: 272 NLSRYYAMWNKPRPESSILDKRSASKFLNSSQKQQFYRELASSAESGWDFSTRW-MRNSS 330

Query: 223 DFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAI 282
           +FTTLA TSILPVDLN+FILK       MELDIV +A+  G+   A+SFLKA+QARK AI
Sbjct: 331 EFTTLATTSILPVDLNVFILK-------MELDIVLLARETGEESIADSFLKASQARKRAI 383

Query: 283 DSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEK 342
           +S+FWN++ GQWLDYW++N T  QE + W+A NQN N FASNF P+WI+LFNSDT +V+ 
Sbjct: 384 NSIFWNDKMGQWLDYWLANDTC-QESETWRACNQNQNVFASNFSPLWIELFNSDTALVDN 442

Query: 343 VRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAKSMAQDIA 402
           V +S QSSGL+ AAGIATSLT SG+QWDFPNGWAPLQHMIVEGL KSGS EAKS+A+DIA
Sbjct: 443 VMRSLQSSGLVCAAGIATSLTNSGQQWDFPNGWAPLQHMIVEGLAKSGSQEAKSLAEDIA 502

Query: 403 MRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPAD 462
           +RW+ TNYV YK+TGAMHEKYNVEKCG+ GGGGEY+PQTGFGWSNGV+LAFLEEFGWP D
Sbjct: 503 VRWVRTNYVGYKKTGAMHEKYNVEKCGESGGGGEYVPQTGFGWSNGVILAFLEEFGWPQD 562

Query: 463 LKIGC 467
            +I C
Sbjct: 563 RRIDC 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224072254\|ref\|XP_002303675.1\| predicted protein [Populus trichocarpa] gi\|222841107\|gb\|EEE78654.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224072252\|ref\|XP_002303674.1\| predicted protein [Populus trichocarpa] gi\|222841106\|gb\|EEE78653.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224058081\|ref\|XP_002299445.1\| predicted protein [Populus trichocarpa] gi\|222846703\|gb\|EEE84250.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297742400\|emb\|CBI34549.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225426222\|ref\|XP_002263698.1\| PREDICTED: trehalase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255564838\|ref\|XP_002523413.1\| alpha,alpha-trehalase, putative [Ricinus communis] gi\|223537363\|gb\|EEF38992.1\| alpha,alpha-trehalase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|242035309\|ref\|XP_002465049.1\| hypothetical protein SORBIDRAFT_01g031280 [Sorghum bicolor] gi\|241918903\|gb\|EER92047.1\| hypothetical protein SORBIDRAFT_01g031280 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|351723307\|ref\|NP_001238042.1\| trehalase 1 GMTRE1 [Glycine max] gi\|4559292\|gb\|AAD22970.1\|AF124148_1 trehalase 1 GMTRE1 [Glycine max]	Back alignment and taxonomy information

>gi\|449452238\|ref\|XP_004143867.1\| PREDICTED: probable trehalase-like [Cucumis sativus] gi\|449519649\|ref\|XP_004166847.1\| PREDICTED: probable trehalase-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		472
TAIR\|locus:2134961		626	TRE1 "trehalase 1" [Arabidopsi	0.508	0.383	0.54	2.6e-115
UNIPROTKB\|I3LIR5		561	TREH "Uncharacterized protein"	0.387	0.326	0.406	4.2e-61
UNIPROTKB\|E2RQS0		575	TREH "Uncharacterized protein"	0.425	0.349	0.389	2.7e-56
ZFIN\|ZDB-GENE-070912-84		583	treh "trehalase (brush-border	0.406	0.329	0.382	1.8e-55
UNIPROTKB\|E9PLW7		577	TREH "Trehalase" [Homo sapiens	0.434	0.355	0.357	3.8e-55
UNIPROTKB\|O43280		583	TREH "Trehalase" [Homo sapiens	0.434	0.351	0.357	4.4e-55
UNIPROTKB\|E1B8N4		579	TREH "Uncharacterized protein"	0.434	0.354	0.371	5.3e-55
UNIPROTKB\|P19813		578	TREH "Trehalase" [Oryctolagus	0.432	0.352	0.357	4.4e-54
FB\|FBgn0003748		596	Treh "Trehalase" [Drosophila m	0.502	0.397	0.342	6.4e-54
UNIPROTKB\|G3V7Q9		576	Treh "Trehalase (Brush-border	0.389	0.319	0.358	1.6e-53

TAIR\|locus:2134961 TRE1 "trehalase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 730 (262.0 bits), Expect = 2.6e-115, Sum P(2) = 2.6e-115
 Identities = 135/250 (54%), Positives = 178/250 (71%)

Query:   216 WVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAA 275
             W+ R+  +FTT+A TS++PVDLN+F+LK       MELDI  M ++ GD   ++ F+KA+
Sbjct:   385 WM-RDPPNFTTMATTSVVPVDLNVFLLK-------MELDIAFMMKVSGDQNGSDRFVKAS 436

Query:   276 QARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKXXXXXXXXXXXXXVPIWIDLFNS 335
             +AR+ A  +VFWNE+ GQWLDYW+S+  S +E + WK              PIWI+  NS
Sbjct:   437 KAREKAFQTVFWNEKAGQWLDYWLSS--SGEESETWKAENQNTNVFASNFAPIWINSINS 494

Query:   336 DTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEAK 395
             D  +V+KV  + ++SGL+  AGI TSLT SG+QWD PNGWAP Q MIV GLG+S   EAK
Sbjct:   495 DENLVKKVVTALKNSGLIAPAGILTSLTNSGQQWDSPNGWAPQQEMIVTGLGRSSVKEAK 554

Query:   396 SMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 455
              MA+DIA RWI +NY+ YK++G +HEK  V + G+ GGGGEY+PQTGFGWSNGV+LAFLE
Sbjct:   555 EMAEDIARRWIKSNYLVYKKSGTIHEKLKVTELGEYGGGGEYMPQTGFGWSNGVILAFLE 614

Query:   456 EFGWPADLKI 465
             E+GWP+ L I
Sbjct:   615 EYGWPSHLSI 624

GO:0003824 "catalytic activity" evidence=IEA

GO:0004555 "alpha,alpha-trehalase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005991 "trehalose metabolic process" evidence=IEA

GO:0015927 "trehalase activity" evidence=ISS

GO:0005993 "trehalose catabolic process" evidence=IDA

UNIPROTKB\|I3LIR5 TREH "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RQS0 TREH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070912-84 treh "trehalase (brush-border membrane glycoprotein)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PLW7 TREH "Trehalase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|O43280 TREH "Trehalase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B8N4 TREH "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P19813 TREH "Trehalase" [Oryctolagus cuniculus (taxid:9986)]	Back alignment and assigned GO terms

FB\|FBgn0003748 Treh "Trehalase" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V7Q9 Treh "Trehalase (Brush-border membrane glycoprotein)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1.28	LOW CONFIDENCE prediction!
3rd Layer	3.2.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		472
PLN02567		554	PLN02567, PLN02567, alpha,alpha-trehalase	1e-146
PLN02567		554	PLN02567, PLN02567, alpha,alpha-trehalase	2e-87
pfam01204		509	pfam01204, Trehalase, Trehalase	3e-86
COG1626		558	COG1626, TreA, Neutral trehalase [Carbohydrate tra	1e-45
pfam01204		509	pfam01204, Trehalase, Trehalase	1e-41
PRK13270		549	PRK13270, treF, trehalase; Provisional	6e-41
PRK13271		569	PRK13271, treA, trehalase; Provisional	1e-34
PRK13272		542	PRK13272, treA, trehalase; Provisional	1e-28
PRK13272		542	PRK13272, treA, trehalase; Provisional	9e-12
COG1626		558	COG1626, TreA, Neutral trehalase [Carbohydrate tra	4e-09
PRK13270		549	PRK13270, treF, trehalase; Provisional	1e-08
PRK13271		569	PRK13271, treA, trehalase; Provisional	1e-08

>gnl\|CDD\|215307 PLN02567, PLN02567, alpha,alpha-trehalase	Back alignment and domain information

 Score =  427 bits (1101), Expect = e-146
 Identities = 161/259 (62%), Positives = 193/259 (74%), Gaps = 11/259 (4%)

Query: 212 WD--SYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAE 269
           WD  S W +R+ S+ TTL  TSILPVDLN F+LK       MELDI   A+++GD  TAE
Sbjct: 304 WDFSSRW-MRDGSNLTTLRTTSILPVDLNAFLLK-------MELDIAFFAKLLGDKATAE 355

Query: 270 SFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSS-QECQRWKASNQNNNAFASNFVPI 328
            FLKAA+ARK AI++V WNEE GQWLDYW+    ++ QE   W A NQN N +ASNFVP+
Sbjct: 356 RFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQESYTWDAENQNTNVYASNFVPL 415

Query: 329 WIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGK 388
           W  +       VEKV +S +SSGL+  AGIATSL  +G+QWDFPN WAPLQHMIVEGL  
Sbjct: 416 WCGVVPPGDAKVEKVVESLKSSGLVLPAGIATSLRNTGQQWDFPNAWAPLQHMIVEGLAA 475

Query: 389 SGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNG 448
           SGS E K++A+DIA RW+ +NYVAYK+TGAMHEKY+   CG++GGGGEYIPQTGFGWSNG
Sbjct: 476 SGSKEGKALAEDIARRWLRSNYVAYKKTGAMHEKYDARYCGEVGGGGEYIPQTGFGWSNG 535

Query: 449 VVLAFLEEFGWPADLKIGC 467
           VVL+ LEEFGWP D K+ C
Sbjct: 536 VVLSLLEEFGWPEDKKLDC 554

Length = 554

>gnl\|CDD\|215307 PLN02567, PLN02567, alpha,alpha-trehalase	Back alignment and domain information

>gnl\|CDD\|216362 pfam01204, Trehalase, Trehalase	Back alignment and domain information

>gnl\|CDD\|224541 COG1626, TreA, Neutral trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|216362 pfam01204, Trehalase, Trehalase	Back alignment and domain information

>gnl\|CDD\|183934 PRK13270, treF, trehalase; Provisional	Back alignment and domain information

>gnl\|CDD\|237326 PRK13271, treA, trehalase; Provisional	Back alignment and domain information

>gnl\|CDD\|183936 PRK13272, treA, trehalase; Provisional	Back alignment and domain information

>gnl\|CDD\|183936 PRK13272, treA, trehalase; Provisional	Back alignment and domain information

>gnl\|CDD\|224541 COG1626, TreA, Neutral trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|183934 PRK13270, treF, trehalase; Provisional	Back alignment and domain information

>gnl\|CDD\|237326 PRK13271, treA, trehalase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		472
PLN02567		554	alpha,alpha-trehalase	100.0
PRK13272		542	treA trehalase; Provisional	100.0
PRK13270		549	treF trehalase; Provisional	100.0
PRK13271		569	treA trehalase; Provisional	100.0
PF01204		512	Trehalase: Trehalase; InterPro: IPR001661 O-Glycos	100.0
KOG0602		600	consensus Neutral trehalase [Carbohydrate transpor	100.0
COG1626		558	TreA Neutral trehalase [Carbohydrate transport and	100.0
PRK10137		786	alpha-glucosidase; Provisional	100.0
PF03200		801	Glyco_hydro_63: Mannosyl oligosaccharide glucosida	99.95
KOG2161		849	consensus Glucosidase I [Carbohydrate transport an	99.87
COG3408		641	GDB1 Glycogen debranching enzyme [Carbohydrate tra	99.27
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	99.25
PF05592		509	Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int	98.7
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	98.48
TIGR01561		575	gde_arch glycogen debranching enzyme, archaeal typ	98.3
TIGR01531		1464	glyc_debranch glycogen debranching enzymye. glycog	97.71
COG3387		612	SGA1 Glucoamylase and related glycosyl hydrolases	97.27
PF04685		365	DUF608: Protein of unknown function, DUF608; Inter	97.16
PF12899		436	Glyco_hydro_100: Alkaline and neutral invertase; I	97.14
TIGR01535		648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	95.81
PLN02973		571	beta-fructofuranosidase	95.22
PLN02703		618	beta-fructofuranosidase	93.23
PLN03005		550	beta-fructofuranosidase	93.09
KOG2119		879	consensus Predicted bile acid beta-glucosidase [Ca	92.98
PF06824		424	DUF1237: Protein of unknown function (DUF1237); In	92.47
COG3459		1056	Cellobiose phosphorylase [Carbohydrate transport a	90.19
COG3538		434	Uncharacterized conserved protein [Function unknow	89.22
PF00723		448	Glyco_hydro_15: Glycosyl hydrolases family 15; Int	85.33

>PLN02567 alpha,alpha-trehalase	Back alignment and domain information

Probab=100.00  E-value=1.2e-119  Score=972.12  Aligned_cols=401  Identities=67%  Similarity=1.173  Sum_probs=380.6

Q ss_pred             CCCCCchhhHHhcchhhhhhhccCCC-CCCCCCCCCCCCCHHHHHHHHhcCCcCC-CCCCChHHHHHHHHhcCCCCCCCC
Q 037772           60 VPTTPLVTFLERVQESALATFGQKDF-DPKLYVDLSLKFDLSAIVTAFHKLPRNA-TGSVSIPDFKEFMHEYFDGAGNDL  137 (472)
Q Consensus        60 ~~~~~~~~~~~~c~g~lL~~vq~~~F-DsKtFVD~~~k~~~~~il~~f~~l~~~~-~~~~~~~~L~~FV~~~F~~~g~el  137 (472)
                      .++++|++||+||||++|++||+++| ||||||||+||++|++||++|++++... ++++++++|++||++||+.||+||
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~v~~~~f~DsKtfvD~~~~~~~~~~l~~f~~~~~~~~~~~~~~~~l~~Fv~~~F~~~g~~l   81 (554)
T PLN02567          2 VPTTPLLTFLVRVQSTALASFGGEDTFDPKLYVDLPLKFSLSETEKAFDALPRSNINGSVPVEELEEFVAEYFDVAGSDL   81 (554)
T ss_pred             CCccchHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCCHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCCccc
Confidence            57899999999999999999999998 9999999999999999999999998765 567899999999999999999999


Q ss_pred             ccCCCCCCCCCCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEE
Q 037772          138 VYAEPPDFVPEPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWV  217 (472)
Q Consensus       138 ~~~~p~d~~~~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwi  217 (472)
                      ++|+|+||+++|++||++|+|+++|+||++||+||++|+|+++++|.++|++|||||||||||||||||||+||||||||
T Consensus        82 ~~~~~~d~~~~p~~~l~~i~~~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~sli~lp~p~iVPGgRFrE~yyWDSy~i  161 (554)
T PLN02567         82 LPYTPPDFVPEPPGFLPKVENPEAREWALKVHSLWKNLARKVSDSVEERPDRHTLLPLPNPVVVPGSRFREVYYWDSYWV  161 (554)
T ss_pred             ccCCccccccCcHhHhhhcCChHHHHHHHHHHHHHHHhccccCcccccCCCcCCcccCCCCeEccCCCcCccchHHHHHH
Confidence            99999999999977999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee------------------------------------------------------------------------------
Q 037772          218 IR------------------------------------------------------------------------------  219 (472)
Q Consensus       218 i~------------------------------------------------------------------------------  219 (472)
                      |+                                                                              
T Consensus       162 ~~GLl~s~~~~~A~~mi~Nf~~~i~~~GfIPNg~R~Yyl~RSQPPlla~mV~~~~~~t~d~~~l~~~lp~L~~E~~~W~~  241 (554)
T PLN02567        162 IRGLLASKMYETAKGVVENLLYLVDTYGFVPNGARAYYTNRSQPPLLSAMVLAVYAATKDVELVRRALPALLKEHAFWTS  241 (554)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCcCCCCCcccccCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            98                                                                              


Q ss_pred             -----------------------------------------------------------------------cCCCccccc
Q 037772          220 -----------------------------------------------------------------------NTSDFTTLA  228 (472)
Q Consensus       220 -----------------------------------------------------------------------d~~~L~si~  228 (472)
                                                                                             |..+|++|+
T Consensus       242 ~~~~v~i~~~~g~~~~L~rY~~~~~~PrpEsyreD~~~a~~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~ti~  321 (554)
T PLN02567        242 GRHTVTIRDANGVVHVLSRYYAMWDKPRPESSRIDKEVASKFSSSSEKQQLYRDIASAAESGWDFSSRWMRDGSNLTTLR  321 (554)
T ss_pred             CCcceeeecCCCCcCCCcccccCCCCCCCccccccHHHHhcCCCchHHHHHHHHHHHHHHcCCCchhhhccccccccccc
Confidence                                                                                   566799999


Q ss_pred             ccccccccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcc-cc
Q 037772          229 ITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSS-QE  307 (472)
Q Consensus       229 t~~IiPVDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~-~~  307 (472)
                      |+.|+|||||||||+       ++++||+|++.+|+.+++++|+++|+++++||+++|||+++|+|+|||+.+++.+ ..
T Consensus       322 t~~i~pVDLNa~L~~-------~e~~LA~la~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~  394 (554)
T PLN02567        322 TTSILPVDLNAFLLK-------MELDIAFFAKLLGDKATAERFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQE  394 (554)
T ss_pred             cccccCccHHHHHHH-------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCcccCeEEeeccccccccccc
Confidence            999999999999999       9999999999999999999999999999999999999999999999999887532 12


Q ss_pred             hhhhhccCCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHh
Q 037772          308 CQRWKASNQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLG  387 (472)
Q Consensus       308 ~~~~~~~~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~  387 (472)
                      .+.|....+++.+++++|+|||+|++++++.++.+++++|++++++.|||||||+.+||||||+||+|||+|||+++||+
T Consensus       395 ~~~~~~~~~~~~~~~s~f~PLw~g~~~~~~~~a~~v~~~l~~~~l~~pgGiptsl~~sg~qWdgPn~W~pl~~l~i~GL~  474 (554)
T PLN02567        395 SYTWDAENQNTNVYASNFVPLWCGVVPPGDAKVEKVVESLKSSGLVLPAGIATSLRNTGQQWDFPNAWAPLQHMIVEGLA  474 (554)
T ss_pred             cccccccccccCccHHHHHHHHcCCCChhhHHHHHHHHHHHhccCccCCcccCCCCCccccCCCCCcCHhHHHHHHHHHH
Confidence            34455555678899999999999999986567899999998878888999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHhCCCCCCCCCC
Q 037772          388 KSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGC  467 (472)
Q Consensus       388 ~yG~~ea~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~~~~~~~c  467 (472)
                      +||+.+|+++|++||+|||++++++|.++|.|+|||||.++++.||||||++|+||||||||+|+|+++||++.+++++|
T Consensus       475 ~yG~~ea~~lA~~la~rwl~~~~~~~~~tg~m~EkYd~~~~~~~GgGGey~~q~GFGWTngV~L~ll~~yg~~~~~~~~~  554 (554)
T PLN02567        475 ASGSKEGKALAEDIARRWLRSNYVAYKKTGAMHEKYDARYCGEVGGGGEYIPQTGFGWSNGVVLSLLEEFGWPEDKKLDC  554 (554)
T ss_pred             HcCChHHHHHHHHHHHHHHHHHHHHHHhcCceEEeECCCCccccCCCCCCCCCCCcChHHHHHHHHHHHhCCcccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999

>PRK13272 treA trehalase; Provisional	Back alignment and domain information

>PRK13270 treF trehalase; Provisional	Back alignment and domain information

>PRK13271 treA trehalase; Provisional	Back alignment and domain information

>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3	Back alignment and domain information

>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10137 alpha-glucosidase; Provisional	Back alignment and domain information

>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3	Back alignment and domain information

>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative	Back alignment and domain information

>TIGR01531 glyc_debranch glycogen debranching enzymye	Back alignment and domain information

>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []	Back alignment and domain information

>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases	Back alignment and domain information

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase	Back alignment and domain information

>PLN02973 beta-fructofuranosidase	Back alignment and domain information

>PLN02703 beta-fructofuranosidase	Back alignment and domain information

>PLN03005 beta-fructofuranosidase	Back alignment and domain information

>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3538 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		472
2jg0_A		535	Family 37 Trehalase From Escherichia Coli In Comple		3e-25
2jf4_A		535	Family 37 Trehalase From Escherichia Coli In Comple		8e-24

>pdb|2JG0|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With 1- Thiatrehazolin Length = 535

Back alignment and structure

Iteration: 1

Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 113/246 (45%), Gaps = 28/246 (11%) Query: 212 WD--SYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAE 269 WD S W + N TL TSI+PVDLN + K ME + ++ GDN A Sbjct: 281 WDFSSRW-MDNPQQLNTLRTTSIVPVDLNSLMFK-------MEKILARASKAAGDNAMAN 332 Query: 270 SFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKXXXXXXXXXXXXXVPIW 329 + A AR+ I+ WN++ G + DY + K P++ Sbjct: 333 QYETLANARQKGIEKYLWNDQQGWYADYDL------------KSHKVRNQLTAAALFPLY 380 Query: 330 IDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKS 389 ++ D + + LL G+ T+ +SG+QWD PNGWAPLQ + EGL Sbjct: 381 VNAAAKDRA---NKMATATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNY 437 Query: 390 GSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGV 449 G K +A DI+ ++ Y + EKY+V G GGGGEY Q GFGW+NGV Sbjct: 438 GQ---KEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGV 494 Query: 450 VLAFLE 455 L L+ Sbjct: 495 TLKMLD 500

PyMOL of 2jg0

>pdb|2JF4|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With Validoxylamine Length = 535

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		472
2jg0_A		535	Periplasmic trehalase; family 37, hydrolase, inhib	3e-49
2jg0_A		535	Periplasmic trehalase; family 37, hydrolase, inhib	2e-21
3c68_A		761	Uncharacterized protein YGJK; GH63, processing alp	6e-36
2z07_A		420	Putative uncharacterized protein TTHA0978; unchara	6e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A* Length = 535	Back alignment and structure

 Score =  175 bits (444), Expect = 3e-49
 Identities = 78/251 (31%), Positives = 115/251 (45%), Gaps = 30/251 (11%)

Query: 210 YYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAE 269
           + + S W + N     TL  TSI+PVDLN  + K       ME  +   ++  GDN  A 
Sbjct: 281 WDFSSRW-MDNPQQLNTLRTTSIVPVDLNSLMFK-------MEKILARASKAAGDNAMAN 332

Query: 270 SFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFVPIW 329
            +   A AR+  I+   WN++ G + DY + +                N   A+   P++
Sbjct: 333 QYETLANARQKGIEKYLWNDQQGWYADYDLKSHK------------VRNQLTAAALFPLY 380

Query: 330 IDLFNSD--TCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLG 387
           ++    D    +    +      G     G+ T+  +SG+QWD PNGWAPLQ +  EGL 
Sbjct: 381 VNAAAKDRANKMATATKTHLLQPG-----GLNTTSVKSGQQWDAPNGWAPLQWVATEGLQ 435

Query: 388 KSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSN 447
               +  K +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFGW+N
Sbjct: 436 N---YGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTN 492

Query: 448 GVVLAFLEEFG 458
           GV L  L+   
Sbjct: 493 GVTLKMLDLIC 503

PyMOL of 2jg0

>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A* Length = 535	Back alignment and structure

>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Length = 420	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		472
2jg0_A		535	Periplasmic trehalase; family 37, hydrolase, inhib	100.0
2z07_A		420	Putative uncharacterized protein TTHA0978; unchara	100.0
3c68_A		761	Uncharacterized protein YGJK; GH63, processing alp	99.97
2okx_A		956	Rhamnosidase B; alpha barrel, glycoside hydrolase	99.48
3cih_A		739	Putative alpha-rhamnosidase; structural genomics,	99.48
1v7w_A		807	Chitobiose phosphorylase; beta-sandwich, (alpha/al	99.01
3qde_A		811	Cellobiose phosphorylase; cellulase, phosphate, tr	98.58
3rrs_A		822	Cellobiose phosphorylase; GH94, alpha barrel, disa	98.5
1lf6_A		684	Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica	98.08
2p0v_A		489	Hypothetical protein BT3781; alpha-beta protein, s	97.51
1ulv_A		1020	Glucodextranase; GH family 15, (alpha-alpha)6-barr	97.51
3p2c_A		463	Putative glycosyl hydrolase; structural genomics,	96.93
2vn4_A		599	Glucoamylase; hydrolase, carbohydrate binding, gly	96.67
2fba_A		492	Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy	96.67
1gai_A		472	Glucoamylase-471; hydrolase, glycosidase, polysacc	96.59
3qt9_A		427	Putative uncharacterized protein CPE0426; alpha-al	96.55
3qry_B		426	Putative uncharacterized protein; alpha-alpha six	95.91

>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*	Back alignment and structure

Probab=100.00  E-value=2.6e-84  Score=698.35  Aligned_cols=347  Identities=33%  Similarity=0.615  Sum_probs=312.0

Q ss_pred             HhcchhhhhhhccCC-C-CCCCCCCCCCCCCHHHHHHHHhcCCcCCCCCCChHHHHHHHHhcCCCCCCCCccCCCCCCCC
Q 037772           70 ERVQESALATFGQKD-F-DPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVP  147 (472)
Q Consensus        70 ~~c~g~lL~~vq~~~-F-DsKtFVD~~~k~~~~~il~~f~~l~~~~~~~~~~~~L~~FV~~~F~~~g~el~~~~p~d~~~  147 (472)
                      +||+|+||++||+++ | ||||||||++|++|++||++|++++.     .++++|++||++||+.||.+ +     +|++
T Consensus        11 ~~~~g~l~~~vq~~~~f~d~k~fvd~~~~~~~~~~~~~~~~~~~-----~~~~~l~~fv~~~f~~~~~~-~-----~~~~   79 (535)
T 2jg0_A           11 DILLGPLFNDVQNAKLFPDQKTFADAVPNSDPLMILADYRMQQN-----QSGFDLRHFVNVNFTLPKEG-E-----KYVP   79 (535)
T ss_dssp             HHHTHHHHHHHHHTTCSSSHHHHHTCEESSCHHHHHHHHHHHTT-----STTCCHHHHHHHHEECCC----------CCC
T ss_pred             hhhhHHHHHHHHHccCCCCCCcCCCCcCCCCHHHHHHHHHHhhc-----CcHHHHHHHHHHhcCCCCcc-c-----cCCC
Confidence            499999999999999 9 99999999999999999999999975     46789999999999999975 3     4554


Q ss_pred             CCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEEEe--------
Q 037772          148 EPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIR--------  219 (472)
Q Consensus       148 ~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwii~--------  219 (472)
                      +|           .+.|+++||++|+.|+|+++    ++|+++||||||+|||||||||+|+|||||||++.        
T Consensus        80 ~~-----------~~~~~~~i~~~W~~l~r~~~----~~~~~~sli~~p~~~vvPGg~F~~~~~WDs~f~~~gLl~~~~~  144 (535)
T 2jg0_A           80 PE-----------GQSLREHIDGLWPVLTRSTE----NTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHW  144 (535)
T ss_dssp             CT-----------TCCHHHHHHHHTTTTEECCS----SCCTTCSBCCCSSCEECCBTTBCSCBHHHHHHHHHHHHHTTCH
T ss_pred             Cc-----------hHHHHHHHHHHHHHHcCCCC----CCCCccccccCCCCcccCCccccccchHHHHHHHHHHHHcCCH
Confidence            44           13477899999999999987    46899999999999999999999999999999976        


Q ss_pred             -----------------------------------------------------------------------cC-------
Q 037772          220 -----------------------------------------------------------------------NT-------  221 (472)
Q Consensus       220 -----------------------------------------------------------------------d~-------  221 (472)
                                                                                             +.       
T Consensus       145 ~~A~~~l~~~~~~~~~~G~IPng~r~yY~~~sqPPl~~~~v~~~~~~~~~~fL~~~~p~L~~~~~ww~~~~~~~~~g~~~  224 (535)
T 2jg0_A          145 DKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLPQMQKEYAYWMDGVENLQAGQQE  224 (535)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSBSBGGGTTCCCSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCCTTEEE
T ss_pred             HHHHHHHHHHHHhhccCCcccCCCCccCCCCCCccHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCcccCccccc
Confidence                                                                                   21       


Q ss_pred             -------------------------------------------------------------------CCccccccccccc
Q 037772          222 -------------------------------------------------------------------SDFTTLAITSILP  234 (472)
Q Consensus       222 -------------------------------------------------------------------~~L~si~t~~IiP  234 (472)
                                                                                         .+|.+|+|+.|+|
T Consensus       225 ~~~~~~~~G~~l~~y~~~~~~prpesyr~d~~~~~~~~~~~~~~~y~~~~~~~eSGwD~s~R~~~~~~~l~~~~t~~i~~  304 (535)
T 2jg0_A          225 KRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVP  304 (535)
T ss_dssp             TTEEECTTSCEEECCCCSCCSCCGGGHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCCSCGGGBSSTTCGGGBCGGGEEC
T ss_pred             cceeecCCCCcceeeccCCCCCCCcceeehhhhhhccccchhHHHHHHHHHHHhCCCCCccccCCCCCcccccCCccchh
Confidence                                                                               1134467888999


Q ss_pred             ccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhcc
Q 037772          235 VDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKAS  314 (472)
Q Consensus       235 VDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~  314 (472)
                      |||||+||.       +++.||+||+.+|+.+++++|+++|++++++|+++|||++.|+|+||++.+++           
T Consensus       305 VDlnA~ly~-------a~~~la~lA~~lG~~~~a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~~~~~~-----------  366 (535)
T 2jg0_A          305 VDLNSLMFK-------MEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHK-----------  366 (535)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTTE-----------
T ss_pred             hHHHHHHHH-------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEeCCCCC-----------
Confidence            999999999       99999999999999999999999999999999999999999999999997763           


Q ss_pred             CCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhH
Q 037772          315 NQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEA  394 (472)
Q Consensus       315 ~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea  394 (472)
                       ++..++.++++|||+|++++  +++++|++.|.+ .++.++||+|+..++++||||||+|||+|||+++||++||+.+ 
T Consensus       367 -~~~~~~~s~~~PL~~gi~~~--e~a~~v~~~l~~-~l~t~~GlrT~s~~s~~yW~GpNvW~~~~~l~i~gL~~yG~~~-  441 (535)
T 2jg0_A          367 -VRNQLTAAALFPLYVNAAAK--DRANKMATATKT-HLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKE-  441 (535)
T ss_dssp             -ECCCCBGGGGHHHHTTCSCH--HHHHHHHHHHHH-HTEETTEECSBSCCCSSSSSTTEECHHHHHHHHHHHHTTTCHH-
T ss_pred             -EeeeehhhhHHHHhcCCCCH--HHHHHHHHHHHH-HhccCCCCCCCcCCCccccCCCCcchhHHHHHHHHHHHcCCHH-
Confidence             56778999999999999995  578999999975 7778999999988999999999999999999999999999984 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHhCCCCCCCCCCCCC
Q 037772          395 KSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGCNGV  470 (472)
Q Consensus       395 ~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~~~~~~~c~~~  470 (472)
                        +|.+|+++|++.+.+.|.++|.|+||||+.++++.|+||||++|.||||||||+|+|+++||..++   .|+.+
T Consensus       442 --~A~~la~~~l~~~~~~~~~~G~l~E~yd~~~~~~~G~ggeY~~~~~fgWT~av~l~ll~~y~~~~~---~~~~~  512 (535)
T 2jg0_A          442 --VAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPKEQ---PCDNV  512 (535)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHSSCBSCEETTSSSCBCCCSSSCCCBSCHHHHHHHHHHHHHHSCSSS---CCSSC
T ss_pred             --HHHHHHHHHHHHHHHHhccCCeeeeeECCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhcc---CCccc
Confidence              999999999999999999999999999999888889999999999999999999999999998763   46643

PyMOL of 2jg0

>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}	Back alignment and structure

>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}	Back alignment and structure

>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*	Back alignment and structure

>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}	Back alignment and structure

>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*	Back alignment and structure

>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*	Back alignment and structure

>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8	Back alignment and structure

>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*	Back alignment and structure

>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*	Back alignment and structure

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*	Back alignment and structure

>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A	Back alignment and structure

>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*	Back alignment and structure

>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A	Back alignment and structure

>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		472
d2jg0a1		511	a.102.1.9 (A:37-547) Periplasmic trehalase TreA {E	7e-53
d2jg0a1		511	a.102.1.9 (A:37-547) Periplasmic trehalase TreA {E	1e-26

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]} Length = 511	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Trehalase-like
domain: Periplasmic trehalase TreA
species: Escherichia coli [TaxId: 562]

 Score =  183 bits (466), Expect = 7e-53
 Identities = 78/254 (30%), Positives = 113/254 (44%), Gaps = 29/254 (11%)

Query: 207 REVYYWDSYWVIRNTSDFTTLAITSILPVDLNIFILKVKVCAFLMELDIVSMAQIVGDNK 266
               +  S   + N     TL  TSI+PVDLN  +       F ME  +   ++  GDN 
Sbjct: 271 AASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLM-------FKMEKILARASKAAGDNA 323

Query: 267 TAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKASNQNNNAFASNFV 326
            A  +   A AR+  I+   WN++ G + DY + +                N   A+   
Sbjct: 324 MANQYETLANARQKGIEKYLWNDQQGWYADYDLKSH------------KVRNQLTAAALF 371

Query: 327 PIWIDLFNSDTC--IVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVE 384
           P++++    D    +    +      G     G+ T+  +SG+QWD PNGWAPLQ +  E
Sbjct: 372 PLYVNAAAKDRANKMATATKTHLLQPG-----GLNTTSVKSGQQWDAPNGWAPLQWVATE 426

Query: 385 GLGKSGSHEAKSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFG 444
           GL   G  E   +A DI+  ++      Y     + EKY+V   G  GGGGEY  Q GFG
Sbjct: 427 GLQNYGQKE---VAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFG 483

Query: 445 WSNGVVLAFLEEFG 458
           W+NGV L  L+   
Sbjct: 484 WTNGVTLKMLDLIC 497

PyMOL of d2jg0a1

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]} Length = 511	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		472
d2jg0a1		511	Periplasmic trehalase TreA {Escherichia coli [TaxI	100.0
d1v7wa1		531	Chitobiose phosphorylase ChbP {Vibrio proteolyticu	98.67
d1lf6a1		397	Bacterial glucoamylase, C-terminal domain {Thermoa	97.8
d1ulva1		413	Glucodextranase, domain A {Arthrobacter globiformi	96.35
d1gaia_		472	Glucoamylase {Aspergillus awamori, variant x100 [T	94.83
d2p0va1		443	Hypothetical protein BT3781 {Bacteroides thetaiota	94.0
d2fbaa1		492	Glucoamylase {Yeast (Saccharomycopsis fibuligera)	93.89
d2nvpa1		426	Hypothetical protein CPF0428 {Clostridium perfring	93.09

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Trehalase-like
domain: Periplasmic trehalase TreA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-98  Score=801.96  Aligned_cols=348  Identities=33%  Similarity=0.584  Sum_probs=318.7

Q ss_pred             HhcchhhhhhhccCC-C-CCCCCCCCCCCCCHHHHHHHHhcCCcCCCCCCChHHHHHHHHhcCCCCCCCCccCCCCCCCC
Q 037772           70 ERVQESALATFGQKD-F-DPKLYVDLSLKFDLSAIVTAFHKLPRNATGSVSIPDFKEFMHEYFDGAGNDLVYAEPPDFVP  147 (472)
Q Consensus        70 ~~c~g~lL~~vq~~~-F-DsKtFVD~~~k~~~~~il~~f~~l~~~~~~~~~~~~L~~FV~~~F~~~g~el~~~~p~d~~~  147 (472)
                      ++|.|+||++||+++ | ||||||||+||.+|++||++|++++.     .++++|++||++||+.| .+++.|+|+||  
T Consensus         5 ~~~~g~ll~~vq~~~~~~dsk~fvd~~~~~~~~~~~~~~~~~~~-----~~~~~l~~f~~~~f~~~-~~~~~~~~~~~--   76 (511)
T d2jg0a1           5 DILLGPLFNDVQNAKLFPDQKTFADAVPNSDPLMILADYRMQQN-----QSGFDLRHFVNVNFTLP-KEGEKYVPPEG--   76 (511)
T ss_dssp             HHHTHHHHHHHHHTTCSSSHHHHHTCEESSCHHHHHHHHHHHTT-----STTCCHHHHHHHHEECC-C----CCCCTT--
T ss_pred             HHHhHHHHHHHHHhCCCCCCCcccCCCCCCCHHHHHHHHHhhcC-----CCHHHHHHHHHHhCCCC-cccccCCCchH--
Confidence            399999999999999 9 99999999999999999999999874     47789999999999987 47776666554  


Q ss_pred             CCcCcCCCCCChhHHHHHHHHHHhcccccccccCCccCCCCccccccCCCceeecCCCcccceeecceEEEe--------
Q 037772          148 EPDGFLPKVKNPQVRAWALEVHALWKNLSRRVSCSVLDRPEFHTLLPLPGPVVIPGSRFREVYYWDSYWVIR--------  219 (472)
Q Consensus       148 ~p~~fl~~I~d~~~r~~a~~i~~lW~~L~R~~~~~v~~~~~~~Sliplp~pfIVPGGRFrE~YYWDSYwii~--------  219 (472)
                                    |+|+++||+||+.|+|+++++    |++|||||||||||||||||||+||||||||++        
T Consensus        77 --------------~~~~~~~~~~w~~l~r~~~~~----~~~~sli~~p~p~iVPGgrF~e~yyWDSyfi~lGLl~~~~~  138 (511)
T d2jg0a1          77 --------------QSLREHIDGLWPVLTRSTENT----EKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHW  138 (511)
T ss_dssp             --------------CCHHHHHHHHTTTTEECCSSC----CTTCSBCCCSSCEECCBTTBCSCBHHHHHHHHHHHHHTTCH
T ss_pred             --------------HHHHHHHHHHHHHhccCCCCC----CCCCceeeCCCCeeCCCCCcCcccchHHHHHHHHHHhCCcH
Confidence                          568999999999999998754    778999999999999999999999999999988        


Q ss_pred             --------------------------------------------------------------------------------
Q 037772          220 --------------------------------------------------------------------------------  219 (472)
Q Consensus       220 --------------------------------------------------------------------------------  219 (472)
                                                                                                      
T Consensus       139 ~~a~~ml~nf~~~i~~~G~IPng~r~yy~~rSQPPlla~mv~~~~~~t~D~~L~~~lp~L~~e~~~W~~~~~~~~~~~~~  218 (511)
T d2jg0a1         139 DKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLPQMQKEYAYWMDGVENLQAGQQE  218 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSBSBGGGTTCCCSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCCTTEEE
T ss_pred             HHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCccHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCCcccCCCce
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------cCCCccccccccccc
Q 037772          220 -----------------------------------------------------------------NTSDFTTLAITSILP  234 (472)
Q Consensus       220 -----------------------------------------------------------------d~~~L~si~t~~IiP  234 (472)
                                                                                       |+.+|.+++|+.|+|
T Consensus       219 ~~~~~~~~g~~l~ry~~~~~~prpEsyr~D~~~a~~~~~~~~~~~y~~l~s~~ESGwD~S~Rw~~~~~~l~~~~t~~i~p  298 (511)
T d2jg0a1         219 KRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVP  298 (511)
T ss_dssp             TTEEECTTSCEEECCCCSCCSCCGGGHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCCSCGGGBSSTTCGGGBCGGGEEC
T ss_pred             eeeecCCCCccccccccccCCCCchhhhhhhhhhhcccchhHHHHHHHHHHHHhccCCccccccCChhhhcccccccccc
Confidence                                                                             345678899999999


Q ss_pred             ccceeeeeeccchhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcccCCCCcEEeeeccCCCcccchhhhhcc
Q 037772          235 VDLNIFILKVKVCAFLMELDIVSMAQIVGDNKTAESFLKAAQARKAAIDSVFWNEENGQWLDYWISNGTSSQECQRWKAS  314 (472)
Q Consensus       235 VDLNa~L~~~~~~~~~~e~~LA~la~~lG~~~~A~~y~~~A~~rk~AI~~~lWdee~G~y~Dyd~~~~~~~~~~~~~~~~  314 (472)
                      ||||||||+       ++++|+.+++++|+.+++.+|+++|++++++|+++|||+++|.|+|||+.+++           
T Consensus       299 VDLNsll~~-------~~~~La~la~~lg~~~~a~~~~~~a~~~~~ai~~~lWd~e~g~~~Dyd~~~~~-----------  360 (511)
T d2jg0a1         299 VDLNSLMFK-------MEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHK-----------  360 (511)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTTE-----------
T ss_pred             ccHHHHHHH-------HHHHHHHHHHHhcchHhHHHHHHHHHHHHHHHHHHhccCccCeeEEEecCCCC-----------
Confidence            999999999       99999999999999999999999999999999999999999999999998884           


Q ss_pred             CCCcccchhcHHHHhhcCCCCchHHHHHHHHHHHhCCCCccccccccccCCCCcCCCCCcCchHHHHHHHHHhhcCChhH
Q 037772          315 NQNNNAFASNFVPIWIDLFNSDTCIVEKVRKSFQSSGLLGAAGIATSLTRSGEQWDFPNGWAPLQHMIVEGLGKSGSHEA  394 (472)
Q Consensus       315 ~~~~~~~~s~~~PLw~g~~~~~~~~a~~vv~~L~~~~~l~~gGIpTSl~~sgqqWD~PN~WaPlq~mii~GL~~yG~~ea  394 (472)
                       ++..+++++++|||+|++++  ++++++++.+.+ .++++|||||+++++++||||||+|+|+|||+++||++||+.+ 
T Consensus       361 -~~~~~~~~~~~PL~~g~~~~--~~~~~~~~~l~~-~~~~~gGipt~~~~~~~yWrgPnvW~p~n~lii~gL~~yG~~e-  435 (511)
T d2jg0a1         361 -VRNQLTAAALFPLYVNAAAK--DRANKMATATKT-HLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKE-  435 (511)
T ss_dssp             -ECCCCBGGGGHHHHTTCSCH--HHHHHHHHHHHH-HTEETTEECSBSCCCSSSSSTTEECHHHHHHHHHHHHTTTCHH-
T ss_pred             -EEeeeccchhhHhhccCCCH--HHHHHHHHHHHH-hhccCCCcCCCCCCCCCCCCCCCcCHhHHHHHHHHHHHcCCHH-
Confidence             67789999999999999985  578999998875 5779999999999999999999999999999999999999995 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCCCCCCcccCCCCccchHHHHHHHHHHhCCCCCCCCCCCC
Q 037772          395 KSMAQDIAMRWINTNYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADLKIGCNG  469 (472)
Q Consensus       395 ~~lA~~Ia~rwl~~~~~~~~~tG~m~EKYd~~~~g~~GgGGEY~~Q~GFGWTNgVvL~ll~~yg~~~~~~~~c~~  469 (472)
                        +|++||+|||++++++|++||.|+||||+.++|..||||||++|+||||||||+|+||+.||.++.. +++.+
T Consensus       436 --~A~~la~~~l~~~~~~~~~tg~~~EkYd~~~~g~~G~ggey~~q~gFGWTngv~L~ll~~~~~~~~~-~~~~~  507 (511)
T d2jg0a1         436 --VAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPKEQP-CDNVP  507 (511)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHSSCBSCEETTSSSCBCCCSSSCCCBSCHHHHHHHHHHHHHHSCSSSC-CSSCC
T ss_pred             --HHHHHHHHHHHHHHHHhhhCCceEEeeCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhhCccccC-CCCCC
Confidence              9999999999999999999999999999999999999999999999999999999999999976444 46554

PyMOL of d2jg0a1

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}	Back information, alignment and structure

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}	Back information, alignment and structure

>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}	Back information, alignment and structure

>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant x100 [TaxId: 105351]}	Back information, alignment and structure

>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis fibuligera) [TaxId: 4944]}	Back information, alignment and structure

>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]}	Back information, alignment and structure