Citrus Sinensis ID: 037778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
Protein Sequence
PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRDKISLFHKEDEASERQRMTKLCNGRLAIQCLNV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHccHHHHHccccccccHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHcccHHHHHHHHHccccccEEEcccccccHHHHHHHcccHHHHHHHHHcccccHHcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccHccccccccHHHHHHHccHHHHHHHHHHccccHHHHHHHcccccHHHHHHccccccEHHHHcccccHHHHHccccccHHHHHHHHccHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccHHcccccccccHHHHHHHcccHHHHHHHHHcccccccEEEccccccccHHHHHHHcccHHHHHHHcccHHHHHHHcccccHHHHHccHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEccccHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccEEEEEEc
Coil and Loop (DISEMBL)
PIRRRRLKLYRAALTGDwavargiydvhegeirapiskrKDTALHIAAAAKQYGFVKELVQrmepgdlaqennvGYTALFFAAASGMVELAREIMTHNKaiateqddkrvlpIDLAASLGHEDMVVYLYGQtknslndedRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYqrgffsakDIENKRQKALKLVQRLWEKVVLLSDsrisnliaepeLIFDAARQGNLEFLLILIREYPdliwnidengytIFHTAVLHRRKRIFKLIYQIGAAKDLilkfedpkknnilhlaamlppqdrlnIVSGAALQMQRELLWFEEVEKAVQRRSAeaknedglspralftRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAaftvpggnkgdtgfpffLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYvsnslfqrdkislfhkedEASERQRMTKLCNGRLAIQCLNV
Flexible Loop (DISEMBL)
pirrrrlklyraaltgdwavargiydvhEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKaiateqddkrvLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRsaeaknedglspralftrkheNLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNslfqrdkislfhkedeaseRQRMtklcngrlaiqclnv
Low Complexity Region (SEG)
PIrrrrlklyraalTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMlvatliatvvfaaaftvPGGNKGDTGFPFFLEKVSFKIFaiseaislvsssasiVNFLSILTSRYTEkdflrllpkklliglatlFvsiaammvvfsaaffivfKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRDKISLFHKEDEASERQRMTKLCNGRLAIQCLNV
Disordered region (IsUnstruct)
******LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEV*****************************************ATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRDKISLFH*************LCNGRLAIQC***
Disordered Region (DISOPRED)
**RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSP********************DTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVS************************TKLCNGRLAIQCLNV
Disordered Region (DISEMBL)
PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEK**************LSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRDKISLFHKEDEASERQRMTKLCNGRLAIQCLNV
Disordered Region (DISPRO)
****RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQ*DKISL*****EASERQRMTKLCNGRLAIQCLNV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRDKISLFHKEDEASERQRMTKLCNGRLAIQCLNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	575	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.443	0.432	0.291	2e-15
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.768	0.843	0.221	5e-09
O75179	2603	Ankyrin repeat domain-con	no	no	0.246	0.054	0.262	0.0002
Q04749	426	Target of rapamycin compl	yes	no	0.140	0.190	0.390	0.0003
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.154	0.047	0.336	0.0003
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.154	0.047	0.336	0.0003
Q99NH0	2603	Ankyrin repeat domain-con	no	no	0.246	0.054	0.255	0.0005
Q9VCA8	4001	Ankyrin repeat and KH dom	yes	no	0.149	0.021	0.329	0.0006
Q8IWZ3	2542	Ankyrin repeat and KH dom	yes	no	0.172	0.038	0.323	0.0007

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 140/312 (44%), Gaps = 57/312 (18%)

Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
           AARQG++E +  L+ + P L   ID+ G T  H AV  +   + KL+     A   I+  
Sbjct: 239 AARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLD---ADPAIVMQ 295

Query: 306 EDPKKNNILHLAA-----------MLPPQDRLNIVS---GAALQMQRELLWFEE---VEK 348
            D   N  LH+A            +  P    N ++     AL +   L   EE   +++
Sbjct: 296 PDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKE 355

Query: 349 AVQRRSAEAKNE-----DGLSPRALFT--------------RKHEN-------LREQGEK 382
            + R  A   NE     D L  R+  T              R ++N       LR+   +
Sbjct: 356 CLARSGALRANELNQPRDEL--RSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHRE 413

Query: 383 WMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSS 442
            + +   S  +VA L ATV FAA FTVPGG+  D G    + + SFKIF I  A++L +S
Sbjct: 414 GINNATNSVTVVAVLFATVAFAAIFTVPGGDNND-GSAVVVGRASFKIFFIFNALALFTS 472

Query: 443 SASIVNFLSILTSRY-TEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRL 501
            A +V  ++++      EK  + ++ K  L+ LA++  S+A     F A+ +IV      
Sbjct: 473 LAVVVVQITLVRGETKAEKRVVEVINK--LMWLASMCTSVA-----FLASSYIVVGRKNE 525

Query: 502 WVAILVTVIASI 513
           W A LVTV+  +
Sbjct: 526 WAAELVTVVGGV 537

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 115/520 (22%), Positives = 207/520 (39%), Gaps = 78/520 (15%)

Query: 37  SKRKDTALHIAAAAKQYGFVKELVQRMEPGDL----AQENNVGYTALFFAAASGMVELAR 92
           ++R DT LH A    +   + E++   +  +L    A++N  G TAL+ AA  G  ++ +
Sbjct: 14  ARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVK 73

Query: 93  EIMTHNKAIATEQDDKRVL-PIDLAASLGHEDMV-VYLYGQTKNSLN-DEDRSHLLVTLI 149
            +M H+ ++      K       +AA  G+  ++ V +    + S   D  ++  L T  
Sbjct: 74  ILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAA 133

Query: 150 QTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIEN 209
                ++   + +   + +AI R+ N +TALH+ AR N +     K  ++       ++ 
Sbjct: 134 SQGHGEIVCFLLDKGVDLAAIARS-NGKTALHSAAR-NGHTVIVKKLIEKKAGMVTRVDK 191

Query: 210 KRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNI 269
           K Q AL +                            A +  N E + +L+     LI + 
Sbjct: 192 KGQTALHM----------------------------AVKGQNTEIVDVLMEADGSLINSA 223

Query: 270 DENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329
           D  G T  H AV   R  I + + +      + +   +      L +A      + + ++
Sbjct: 224 DNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAV---NKSGETALDIAEKTGLHEIVPLL 280

Query: 330 SGAALQMQRELLWFEEVE-KAVQRRSAEAKNEDGLSPRALFTRKHENLRE-QG------- 380
               +Q  R +   E+VE     R+  E  +E G        +     RE QG       
Sbjct: 281 QKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNK 340

Query: 381 --EKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGD-----TGF----------PFFL 423
              + + +   S  LVA LIATV FAA F VPG    D      G+          P FL
Sbjct: 341 MHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFL 400

Query: 424 EKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAA 483
             V F  FA+      +S +  +V    ++  R  +K  + ++ K  L+ +A + +S+A 
Sbjct: 401 IFVVFDSFAL-----FISLAVVVVQTSVVVIERRAKKQMMAIINK--LMWMACIMISVA- 452

Query: 484 MMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHC 523
               F +  F+V  +    +A+ VT I ++ ++  +   C
Sbjct: 453 ----FVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMC 488

Arabidopsis thaliana (taxid: 3702)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 3/145 (2%)

Query: 9    LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL 68
            L  AA  G   V R + D        P+   +DTAL IAA    Y F + L+ R    D+
Sbjct: 1289 LMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDV 1348

Query: 69   AQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
               N  G T L+ AA  G +++  +++    A     D++++ P+  A   GH  +V YL
Sbjct: 1349 --RNKKGNTPLWLAANGGHLDVV-QLLVQAGADVDAADNRKITPLMAAFRKGHVKVVRYL 1405

Query: 129  YGQTKNSLNDEDRSHLLVTLIQTDL 153
              +     +D +    + T+   ++
Sbjct: 1406 VKEVNQFPSDSECMRYIATITDKEM 1430

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q04749|AVO2_YEAST Target of rapamycin complex 2 subunit AVO2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVO2 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 236 LIAEPEL-IFDAARQGNLEFLLILIREYPDLIWNID-ENGYTIFHTAVLHRRKRIFKLIY 293
           ++ EP + + +A  +GNL  +  L+R  PDL+ NID ENG++  H A  H R  I   + 
Sbjct: 1   MLKEPSVRLREAIIEGNLLIVKRLLRRNPDLLTNIDSENGWSSLHYASYHGRYLICVYLI 60

Query: 294 QIGAAK-DLILKFEDPKKNNILHLAAM 319
           Q+G  K +LI  F   K N  +HLA M
Sbjct: 61  QLGHDKHELIKTF---KGNTCVHLALM 84

Component of TORC2, which regulates cell cycle-dependent polarization of the actin-cytoskeleton and cell wall integrity. TORC2 controls polarity of the actin cytoskeleton, which is required for orienting the secretory pathway toward discrete growth sites, via the RHO1/PKC1/MAPK cell integrity pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 9/98 (9%)

Query: 37  SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMT 96
           +K+ +TALHIAA A Q   V+ELV      ++  ++  G+T L+ AA    +E+ + ++ 
Sbjct: 71  TKKGNTALHIAALAGQDEVVRELVNYG--ANVNAQSQKGFTPLYMAAQENHLEVVKFLLE 128

Query: 97  H--NKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YG 130
           +  N+ +ATE       P+ +A   GHE++V +L  YG
Sbjct: 129 NGANQNVATEDG---FTPLAVALQQGHENVVAHLINYG 163

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 9/98 (9%)

Query: 37  SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMT 96
           +K+ +TALHIAA A Q   V+ELV      ++  ++  G+T L+ AA    +E+ + ++ 
Sbjct: 75  TKKGNTALHIAALAGQDEVVRELVNYG--ANVNAQSQKGFTPLYMAAQENHLEVVKFLLE 132

Query: 97  H--NKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YG 130
           +  N+ +ATE       P+ +A   GHE++V +L  YG
Sbjct: 133 NGANQNVATEDG---FTPLAVALQQGHENVVAHLINYG 167

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 3/145 (2%)

Query: 9    LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL 68
            L  AA  G   V R + D        P+   +DTAL IAA    Y F + L+ +    D+
Sbjct: 1285 LMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIGKGAHIDV 1344

Query: 69   AQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
               N  G T L+ AA  G +++  +++    A     D++++ P+  A   GH  +V YL
Sbjct: 1345 --RNKKGNTPLWLAANGGHLDVV-QLLVQATADVDAADNRKITPLMAAFRKGHVKVVRYL 1401

Query: 129  YGQTKNSLNDEDRSHLLVTLIQTDL 153
              +     +D +    + T+   ++
Sbjct: 1402 VKEVNQFPSDSECMRYIATITDKEM 1426

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2

 Score = 46.6 bits (109), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 41  DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           +T L  A A  Q   VK L++     ++ ++N  G+T L  AA++G VE+A+ ++ H   
Sbjct: 653 NTPLMFACAGGQVDVVKVLLKHG--ANVEEQNENGHTPLMEAASAGHVEVAKVLLEHGAG 710

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
           I T  ++ +   + LA   GH DMV +L
Sbjct: 711 INTHSNEFKESALTLACYKGHLDMVRFL 738

Mediator of receptor tyrosine kinase (RTK) signaling, and may act either downstream of MAPK or transduce signaling through a parallel branch of the RTK pathway.

Drosophila melanogaster (taxid: 7227)

>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 27  VHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG 86
           +H+ ++ +  S   +TAL  A A      VK L+   E  ++   N  G+T L  AA++G
Sbjct: 293 LHDADVNS-QSATGNTALTYACAGGFVDIVKVLLN--EGANIEDHNENGHTPLMEAASAG 349

Query: 87  MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            VE+AR ++ H   I T  ++ +   + LA   GH DMV +L
Sbjct: 350 HVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFL 391

May play a role as a scaffolding protein that may be associated with the abnormal phenotype of leukemia cells. Isoform 2 may possess an antiapoptotic effect and protect cells during normal cell survival through its regulation of caspases.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
224120488	610	predicted protein [Populus trichocarpa]	0.953	0.898	0.516	1e-152
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.933	0.680	0.497	1e-142
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.932	0.315	0.465	1e-137
297737987	1855	unnamed protein product [Vitis vinifera]	0.906	0.280	0.486	1e-136
359483665	762	PREDICTED: ankyrin repeat-containing pro	0.932	0.703	0.471	1e-135
224136692	743	predicted protein [Populus trichocarpa]	0.937	0.725	0.462	1e-134
225425076	563	PREDICTED: ankyrin repeat-containing pro	0.88	0.898	0.489	1e-131
359473665	602	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.939	0.897	0.485	1e-129
147860696	891	hypothetical protein VITISV_011174 [Viti	0.916	0.591	0.452	1e-126
356532648	739	PREDICTED: uncharacterized protein LOC10	0.911	0.709	0.464	1e-125

>gi|224120488|ref|XP_002331060.1| predicted protein [Populus trichocarpa] gi|222872990|gb|EEF10121.1| predicted protein [Populus trichocarpa]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/560 (51%), Positives = 388/560 (69%), Gaps = 12/560 (2%)

Query: 3   RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQR 62
           R+R L+LY+AAL+GDW  A GIY +  GE+ A I+KR +TALHIAAAA+   FVK+LV  
Sbjct: 46  RKRHLQLYQAALSGDWDTAEGIYKLCPGEVNARITKRGETALHIAAAAEHTHFVKQLVGM 105

Query: 63  MEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHE 122
           M    LA  ++ G TA  FAA SG+  LA+ +M     +A  +    +LPI +A  LGH 
Sbjct: 106 MSIEALAYRSSAGNTAFCFAAISGVEALAKVMMDKKPDLAMTRGRGNLLPIYMATLLGHR 165

Query: 123 DMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHA 182
            MV YLY +TK  L D DR  LLV LI +D+YDVA ++ ++ H   A  R  ++ TALHA
Sbjct: 166 GMVSYLYDETKEQLTDGDRIKLLVALINSDIYDVAWKMLKE-HRGLAYARDEHQLTALHA 224

Query: 183 LARKNLNYSHFTKQYQRGFFS---------AKDIENKRQKALKLVQRLWEKVVLLSDSRI 233
            ++K+   S+   Q   GF++         A+  +   ++AL L+Q LWE+VVLL DS I
Sbjct: 225 FSQKSCMPSNVVDQSPPGFWNKCLNPCFKLAQMKKLMHKQALDLIQYLWEQVVLLDDSTI 284

Query: 234 SNLIAEP-ELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLI 292
           S+ I +P  LIF AA +GNL+ L ILIR YP+LI+ +D+N Y+IFH A+L+R + I K+I
Sbjct: 285 SSQIGKPWPLIFTAAERGNLDLLTILIRLYPELIFKVDQNTYSIFHIAILNRHEDILKMI 344

Query: 293 YQIGAAKDLILKFEDPKKNNILHLAA-MLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQ 351
           YQIG+ K+++  ++D + NN+LHLAA +L    RLN + GAALQ+QRELLWFEEV+K VQ
Sbjct: 345 YQIGSIKNVMTIYKDREGNNMLHLAAKVLESPSRLNAIPGAALQLQRELLWFEEVKKVVQ 404

Query: 352 RRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPG 411
            R  E KN  G +P ALF  +H +L ++GE+WM+DTA SCMLVATLIATVVFAAAFTVPG
Sbjct: 405 PRHIEEKNFHGKTPGALFIEQHRDLMKEGEQWMRDTADSCMLVATLIATVVFAAAFTVPG 464

Query: 412 GNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLL 471
           GN  D G P FL++++FK FAIS+AISLV+S++S++ FLS  TSRY E++FL  LP +L+
Sbjct: 465 GNFQDKGTPVFLKEIAFKFFAISDAISLVTSASSLLTFLSTRTSRYAEQNFLWSLPNRLI 524

Query: 472 IGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVR 531
           IGL TLF+SI AMMV F A FF+VF +  L  +I + V+AS+PVI FI QH +L  D++ 
Sbjct: 525 IGLTTLFISIGAMMVAFMATFFLVFGNKLLPYSIPIAVVASLPVIFFIWQHFRLFVDMIH 584

Query: 532 STYVSNSLFQRDKISLFHKE 551
           STY S SLF+ +K  LF K+
Sbjct: 585 STYTSRSLFKPNKSPLFSKK 604

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/557 (49%), Positives = 372/557 (66%), Gaps = 20/557 (3%)

Query: 2   IRRRRLKLY----RAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVK 57
           IR   LK Y     AAL GDW  A+   + +   +RA I++R +TALHIAA A+   FV+
Sbjct: 167 IRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVE 226

Query: 58  ELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA 117
           ELV+ M+P DLA +N VG TAL FAAASG+  +A  ++  N+ +   +  K V P+ +AA
Sbjct: 227 ELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAA 286

Query: 118 SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKS--AIGRAA 174
            +GH+DMV YLY  T+ ++L  EDR  LLV  I  +L+DVAL +   LHE    A+ R  
Sbjct: 287 LVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHM---LHEDPELAMARDG 343

Query: 175 NEETALHALARKNLNYSHFTKQ--YQR------GFFSAKDIENKRQKALKLVQRLWEKVV 226
           N +TALH LARK L +   ++   + R      GF S  D +    +AL+LVQ+LW+K++
Sbjct: 344 NGDTALHVLARKPLAFYSGSQLGIWHRCIYSFPGFKSVYDKKLMHIQALELVQQLWDKIL 403

Query: 227 LLS-DSRISNLIAEPE-LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHR 284
            L  D +I  LI  P  L+F AA  G +EF+ +LIR YPDLIW +++   TIFH AV HR
Sbjct: 404 SLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHR 463

Query: 285 RKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFE 344
           +++IF LIY+IGA KD I  ++D K NN+LHLA  L P +RL I SGAA Q+QREL WF+
Sbjct: 464 QEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFK 523

Query: 345 EVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFA 404
           EVEK +Q    E KNE G +P+ LFT +H++L  +GEKWMKDTA+SCM+VATLIATV+FA
Sbjct: 524 EVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFA 583

Query: 405 AAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLR 464
           AAF+VPGGN  DTG P FL K SF +FAIS+A++L SS+ SI+ FLSILTSRY E+DFL 
Sbjct: 584 AAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLE 643

Query: 465 LLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQ 524
            LP +L+IGLATLF+S+A MM+ F A  FIV     +WVA  + ++A +PV +F +    
Sbjct: 644 SLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFP 703

Query: 525 LLCDVVRSTYVSNSLFQ 541
           L  D++   Y S+ +F+
Sbjct: 704 LFIDMISHRYRSSIIFR 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/597 (46%), Positives = 374/597 (62%), Gaps = 61/597 (10%)

Query: 2   IRRRRLKLY----RAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVK 57
           IR   LK Y     AAL GDW  A+   + +   +RA I++R +TALHIAA A+   FV+
Sbjct: 167 IRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVE 226

Query: 58  ELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA 117
           ELV+ M+P DLA +N VG TAL FAAASG+  +A  ++  N+ +   +  K V P+ +AA
Sbjct: 227 ELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAA 286

Query: 118 SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKS--AIGRAA 174
            +GH+DMV YLY  T+ ++L  EDR  LLV  I  +L+DVAL +   LHE    A+ R  
Sbjct: 287 LVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHM---LHEDPELAMARDG 343

Query: 175 NEETALHALARKNLNYSHFTKQYQRGFF-------------------------------- 202
           N +TALH LARK L + +  +  QRG F                                
Sbjct: 344 NGDTALHVLARKPLAF-YSGRARQRGVFLLYSATKGEVRLCLNVIRSLCSASTHVFYXFN 402

Query: 203 -------------SAKDIENKRQ---KALKLVQRLWEKVVLLS-DSRISNLIAEPE-LIF 244
                          K + +K+    +AL+LVQ+LW+K++ L  D +I  LI  P  L+F
Sbjct: 403 SQTYFGLLPHAVPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLF 462

Query: 245 DAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILK 304
            AA  G +EF+ +LIR YPDLIW +++   TIFH AV HR+++IF LIY+IGA KD I  
Sbjct: 463 TAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAA 522

Query: 305 FEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLS 364
           ++D K NN+LHLA  L P +RL I SGAA Q+QREL WF+EVEK +Q    E KNE G +
Sbjct: 523 YKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRT 582

Query: 365 PRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLE 424
           P+ LFT +H++L  +GEKWMKDTA+SCM+VATLIATV+FAAAF+VPGGN  DTG P FL 
Sbjct: 583 PQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLT 642

Query: 425 KVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAM 484
           K SF +FAIS+A++L SS+ SI+ FLSILTSRY E+DFL  LP +L+IGLATLF+S+A M
Sbjct: 643 KKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATM 702

Query: 485 MVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQ 541
           M+ F A  FIV     +WVA  + ++A +PV +F +    L  D++   Y S+ +F+
Sbjct: 703 MIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFR 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/547 (48%), Positives = 360/547 (65%), Gaps = 26/547 (4%)

Query: 2   IRRRRLKLY----RAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVK 57
           IR   LK Y     AAL GDW  A+   + +   +RA I++R +TALHIAA A+   FV+
Sbjct: 167 IRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVE 226

Query: 58  ELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA 117
           ELV+ M+P DLA +N VG TAL FAAASG+  +A  ++  N+ +   +  K V P+ +AA
Sbjct: 227 ELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAA 286

Query: 118 SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANE 176
            +GH+DMV YLY  T+ ++L  EDR  LLV  I  +L+DVAL +   LHE   +   A +
Sbjct: 287 LVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHM---LHEDPELA-MARD 342

Query: 177 ETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLS-DSRISN 235
             ++H +                GF S  D +    +AL+LVQ+LW+K++ L  D +I  
Sbjct: 343 GASIHVIP---------------GFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGE 387

Query: 236 LIAEPE-LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ 294
           LI  P  L+F AA  G +EF+ +LIR YPDLIW +++   TIFH AV HR+++IF LIY+
Sbjct: 388 LIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYE 447

Query: 295 IGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRS 354
           IGA KD I  ++D K NN+LHLA  L P +RL I SGAA Q+QREL WF+EVEK +Q   
Sbjct: 448 IGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSY 507

Query: 355 AEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNK 414
            E KNE G +P+ LFT +H++L  +GEKWMKDTA+SCM+VATLIATV+FAAAF+VPGGN 
Sbjct: 508 TEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGND 567

Query: 415 GDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGL 474
            DTG P FL K SF +FAIS+A++L SS+ SI+ FLSILTSRY E+DFL  LP +L+IGL
Sbjct: 568 DDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGL 627

Query: 475 ATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTY 534
           ATLF+S+A MM+ F A  FIV     +WVA  + ++A +PV +F +    L  D++   Y
Sbjct: 628 ATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRY 687

Query: 535 VSNSLFQ 541
            S+ +F+
Sbjct: 688 RSSIIFR 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/553 (47%), Positives = 353/553 (63%), Gaps = 17/553 (3%)

Query: 4   RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRM 63
           R    LY AAL+GDW VA  I++     +RA I++ ++T LHIAA A+   FV+ LV+ M
Sbjct: 203 RTYAPLYLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAGARHLTFVENLVRMM 262

Query: 64  EPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHED 123
            P DLA  N VG TAL FAA SG+ ++A  ++  N  +   +  +   P+ +A  LGH +
Sbjct: 263 TPADLALRNKVGNTALCFAAVSGVTKIAEVMVNKNNRLPLIRGSEGATPLHMATLLGHRE 322

Query: 124 MVVYLYGQT-------KNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANE 176
           MV YLY +T        N L DED   LL+  I +DL+DVAL++ +  H K A  R  N 
Sbjct: 323 MVWYLYNKTDSNRLTDSNRLTDEDHHGLLIAAITSDLFDVALKIVQK-HPKIATARGRNG 381

Query: 177 ETALHALARKNLNYSH-----FTKQYQRGFFSAKDIENKRQ---KALKLVQRLWEKVVLL 228
           ETALH LARK   Y       F ++    F   K + +++    +AL+LV+ LW +V+L+
Sbjct: 382 ETALHILARKPSAYQSGSQLGFLQRCIYAFPFIKVVYDQKLMHIQALELVKCLWSEVLLM 441

Query: 229 SDSRISNLIAEPE-LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKR 287
           ++ ++  LI  P  L+F AA  G +EFL+ LI  YPDLIW +D    +IFH AV+HR+++
Sbjct: 442 NELQVGELIRTPSRLLFTAAELGIVEFLIELIHAYPDLIWKVDTQSRSIFHIAVVHRQEK 501

Query: 288 IFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVE 347
           +F LI++IGA KDLI  + D   NN+LHLA  L P DRL   SGAALQ++REL WF+EVE
Sbjct: 502 VFNLIHEIGALKDLIASYRDENNNNMLHLAGKLAPSDRLKTDSGAALQLRRELHWFKEVE 561

Query: 348 KAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAF 407
           K VQ    E +N +G +P+ LF  +H+ L  +GEKWMKDTA SCMLVATLIATV+FAA F
Sbjct: 562 KIVQPLYREIRNSEGKTPQTLFMEEHKVLVREGEKWMKDTAASCMLVATLIATVMFAAFF 621

Query: 408 TVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLP 467
           TVPGG+ G+TG P FL++ SF +FA+S+A+S VSS+ASI+ FLSILTSRY E+DFL  LP
Sbjct: 622 TVPGGDNGNTGIPIFLKRRSFTVFAVSDALSFVSSAASILMFLSILTSRYAEEDFLHSLP 681

Query: 468 KKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLC 527
            +L IGL TLF+S+A MM+ F A  F+V         I + ++A IPV +F +    L  
Sbjct: 682 NRLTIGLGTLFISVATMMIAFCATLFLVLGHGLHQAKIPIALVACIPVSLFALLQFPLFA 741

Query: 528 DVVRSTYVSNSLF 540
           D+V  TY S   F
Sbjct: 742 DMVSCTYGSRMFF 754

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/551 (46%), Positives = 359/551 (65%), Gaps = 12/551 (2%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL 68
           LY+AA+ GDW  A   +  H G I   I+K  DT LHIAA AK   FV+E+V+ M   DL
Sbjct: 195 LYQAAMKGDWEKADEFFKSHPGAINVRITKEMDTVLHIAAGAKHTKFVEEVVKSMTGTDL 254

Query: 69  AQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
              N    TAL +AAASG+ ++A  +++ N+ +   ++++ V P+ +AA  GH+DMV YL
Sbjct: 255 TLRNKYNNTALCYAAASGVTKIAEMMVSKNRNLPMMRNNRGVTPLYIAALFGHKDMVWYL 314

Query: 129 YGQTKNS-LNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187
           Y  T +  L  +D   LL+  I TDL+DVAL + +   E  AI R  N ETALH LARK+
Sbjct: 315 YSVTSDEYLTRDDYIGLLIATISTDLFDVALSIIQHQPEL-AIQRDLNGETALHVLARKS 373

Query: 188 LNYSH-----FTKQYQRGFFSAKDIENKR---QKALKLVQRLWEKVVLLSDSRISNLIAE 239
             ++      F  ++   F   K + +K+    + L+LV+  WE+V+LL D +I+ L+A 
Sbjct: 374 SAFASKSGLGFWHRFIYPFPGIKAVYDKKLMHTQVLELVKLSWEQVLLLDDCQIAELLAS 433

Query: 240 P-ELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA 298
           P + +F AA  G +EF+  LIR YPDLIW ++E   +IFH AV HR+++IF LI  IGA 
Sbjct: 434 PSQPLFVAAEFGIVEFITALIRSYPDLIWKVNEQSRSIFHIAVAHRQEKIFSLINDIGAH 493

Query: 299 KDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAK 358
           KD+I  ++D    NILHLA M+ P+D+LN++SGAALQMQRELLWF+EVEK VQ    E +
Sbjct: 494 KDMITAYKDINNANILHLAGMIAPRDKLNVISGAALQMQRELLWFKEVEKNVQPSLKEMR 553

Query: 359 NEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTG 418
           +++G +PR LFT +H  L ++GEKWMK+TA+SCML+ATLI TV+FAA FTVPGGN    G
Sbjct: 554 DKNGRTPRMLFTEEHRGLVKEGEKWMKNTASSCMLLATLITTVMFAAIFTVPGGNDNSKG 613

Query: 419 FPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLF 478
            P  L   SF +FA+++A +L SS  SI+ FLSILTSRY E+DF+  LPK+L++GLATLF
Sbjct: 614 TPLVLASTSFIVFAVADAFALFSSVTSILMFLSILTSRYAEEDFVESLPKRLVVGLATLF 673

Query: 479 VSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNS 538
            SIAAM+V F+A F IV      W+ + +++ +S+PV +F      L  D++ S+Y +  
Sbjct: 674 CSIAAMLVAFAATFCIVLDHRLAWIVVPISLGSSVPVTLFAFLQFPLFVDMIHSSYGAG- 732

Query: 539 LFQRDKISLFH 549
           +F R    + +
Sbjct: 733 IFARKSTDMLY 743

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 266/543 (48%), Positives = 334/543 (61%), Gaps = 37/543 (6%)

Query: 7   LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG 66
           + LY AA+ GDW  A GI+ +    +R  I++ +DT LHIAAAAK   FV+E+V+ MEP 
Sbjct: 57  IPLYGAAMKGDWKTAEGIFKMFPPAVRMTITQGRDTTLHIAAAAKHVQFVEEMVKMMEPK 116

Query: 67  DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVV 126
           DL  +N    TAL FAAASG+V +A  ++  N+ +   Q    ++P+ +AA LGH +MV 
Sbjct: 117 DLELQNKYSNTALCFAAASGIVRIAEVMVKKNENLPMIQGGGGMIPLHMAALLGHSEMVR 176

Query: 127 YLYGQTKNS-LNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALAR 185
           YLY +T +  L   D   LL T I TDLYDVAL +    H   A+ R  N+ETALH LAR
Sbjct: 177 YLYNKTVHEHLAPGDWVGLLNTCISTDLYDVALDILHH-HPALAVERDENDETALHLLAR 235

Query: 186 KNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFD 245
           K               FS  D              +W           +  I  P L+  
Sbjct: 236 KP------------SAFSGGD-----------QLHMW-----------NTFITSP-LLLV 260

Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
           AA  GN  FL  L+  YPDLIW  D +  TIFH AVLHRR+ IF LIY+IG+ KDLI+ +
Sbjct: 261 AAELGNTVFLTELVGSYPDLIWEADNDNRTIFHIAVLHRRESIFNLIYEIGSMKDLIVPY 320

Query: 306 EDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSP 365
           +D   NN+LHLA    P  + NIVSGAALQMQRELLWF+EVEK +     E KN+DG +P
Sbjct: 321 KDDNDNNMLHLAGRKAPLPQRNIVSGAALQMQRELLWFKEVEKIMLPTYRERKNKDGKTP 380

Query: 366 RALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEK 425
           R LFT++H+NL + GEKWM+ TA   MLVATLIATVVFAAAFTVPGG+  DTG P  L K
Sbjct: 381 RDLFTKEHKNLMKDGEKWMRGTAAQSMLVATLIATVVFAAAFTVPGGSNQDTGIPILLRK 440

Query: 426 VSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMM 485
            SF IFA+S+AI+L SSS SI+ FLSILTSRY E DFL  LP +L+ GL TLFVSI +MM
Sbjct: 441 KSFMIFAVSDAIALFSSSTSILVFLSILTSRYAEDDFLESLPSRLMFGLITLFVSIISMM 500

Query: 486 VVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRDKI 545
           V F+  FF+VF     W  +L+ V A +PV ++      LL D+ RSTY S  LF+  K 
Sbjct: 501 VTFTITFFLVFGHGFAWAPMLIAVSACVPVTLYFSLQYPLLADIFRSTYGSRFLFRPSKR 560

Query: 546 SLF 548
            L+
Sbjct: 561 MLY 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/554 (48%), Positives = 354/554 (63%), Gaps = 14/554 (2%)

Query: 7   LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG 66
           + LYRAA+ GDW  A+GI+++    +R  I+   DT LHIAAAAK   FV+E+V+ MEP 
Sbjct: 51  IPLYRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPE 110

Query: 67  DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVV 126
           DL  +N    TA +FAAA+G+V +A+ ++  N+ +   +    + P+ +AA LGH +MV 
Sbjct: 111 DLELKNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMIRAYDEMTPLHVAALLGHSEMVW 170

Query: 127 YLYGQTKN-SLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALAR 185
           YLY +T +  L   D   LL   I TDLYDVAL V    H   A+ R  N ETALH LAR
Sbjct: 171 YLYNKTDHEQLTVSDWVKLLNACISTDLYDVALDV-SSHHPTLAVERDGNGETALHLLAR 229

Query: 186 KNLNYS-----HFTKQYQRGFFSAKDIENKR----QKALKLVQRLWEKVVLLSDSRISNL 236
           K   +S     H          S K +E+K+     K+LKLV+ LW++V++   S I +L
Sbjct: 230 KPSAFSGGDQLHIWNTVINSI-SCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHSEILDL 288

Query: 237 IAEPE-LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQI 295
           I  P  L+  AA  GN  FL  LI  YPDLIW +D++  +IFH AVLHR++ IF LIY+I
Sbjct: 289 IRSPSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIYEI 348

Query: 296 GAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSA 355
           G+ KDLI+  +D   NNILHLA  L P  + NIV GAALQMQRELLWF EVEK V     
Sbjct: 349 GSMKDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFR 408

Query: 356 EAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKG 415
           E KN DG +P  LFT++H++L ++GEKWM+ TA   MLVATLIATVVFAAA TVPGG+  
Sbjct: 409 ERKNRDGETPWDLFTKEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGSNQ 468

Query: 416 DTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSI-LTSRYTEKDFLRLLPKKLLIGL 474
           DTG P F+EK    IFA+S+AI+L +S  SI+ FLSI LTSRY + DFL LLP +L+ GL
Sbjct: 469 DTGIPXFVEKEILHIFAVSDAIALFTSLTSILVFLSIVLTSRYADDDFLELLPSRLMFGL 528

Query: 475 ATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTY 534
            TLF+SI +MMV F+A FF++F     W  ILV V A + V ++    C+L   ++R+TY
Sbjct: 529 FTLFISIISMMVTFTATFFLLFSHGVTWAPILVAVFAFLLVTLYFSMQCRLWAHIIRATY 588

Query: 535 VSNSLFQRDKISLF 548
            S  +F+  K  L+
Sbjct: 589 CSRLIFRPRKHMLY 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860696|emb|CAN81449.1| hypothetical protein VITISV_011174 [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/568 (45%), Positives = 342/568 (60%), Gaps = 41/568 (7%)

Query: 7   LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG 66
           + LY+AAL GDW  A+GI+++H   +R  I++  DT LHIAAAAK+  FV+E+V  M+P 
Sbjct: 330 IPLYQAALKGDWETAKGIFEIHPTAVRVRITRNLDTVLHIAAAAKRTHFVEEVVGLMDPN 389

Query: 67  DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVV 126
           DL  +N    TA  FAAA+G V +A  ++  N  +   + +++++P+ +AA LGH +MV 
Sbjct: 390 DLELQNENSNTAFCFAAAAGTVRIAEVMVKKNDHLPMIRGNQQMMPLHMAALLGHSEMVW 449

Query: 127 YLYGQTKNS-LNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALAR 185
           YLY +T +  L DED   +L T I TDLY+VAL + E  H K A  R  N ETALH LAR
Sbjct: 450 YLYNKTNHQDLKDEDWIGILNTCISTDLYEVALAILES-HPKLATIRDGNYETALHLLAR 508

Query: 186 KNLNYSHFTKQYQRGFFSAKDIENKRQ----------------------------KALKL 217
           K    S F+ + + G ++     N R                             K L  
Sbjct: 509 KP---SAFSGESRIGIWTT--FINPRSPLQVSTVVIIFLMVIPSNNFLFNSQFQSKPLNS 563

Query: 218 VQRLWEKVVLLSDSRISNLIAEP-ELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI 276
                 ++    DS+I++LI +P  L+F AA+ GN  FL  L+  YPDLIW +     +I
Sbjct: 564 SNAFGSRLYNYLDSKIADLIRDPYRLVFVAAKLGNTIFLTELLHSYPDLIWRVXSQTRSI 623

Query: 277 FHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQM 336
           FH A LHR+ RIF LIY+IG+ KD+I+ + D   NN+LHL   L     LNI+SGAALQM
Sbjct: 624 FHIAALHRQDRIFNLIYEIGSIKDMIMTYRDENGNNMLHLVGKLAHPSELNIISGAALQM 683

Query: 337 QRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVAT 396
           QRELLWF+EVEK +Q    E KN  G +P  LFT +H +L + GEKWM++TA   MLVAT
Sbjct: 684 QRELLWFKEVEKLMQPTYREKKNRQGKTPWVLFTEEHRDLMKDGEKWMRETAAQSMLVAT 743

Query: 397 LIATVVFAAAFTVPGGNKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSR 456
           LIATVVF+AAFTVPGG+   T  P  L      +FA+S+ ++L +SS SI+ FLSILTSR
Sbjct: 744 LIATVVFSAAFTVPGGHSQQTDTPILL-----MVFAVSDGLALFTSSTSILMFLSILTSR 798

Query: 457 YTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVI 516
           Y E+DFL  LP +L+ GL  LFVSI  MMV F+  FFIV+     WV IL+ + A+ PV 
Sbjct: 799 YAEQDFLHSLPSRLMFGLTALFVSIITMMVTFTITFFIVYHHGFAWVPILIALFATGPVS 858

Query: 517 MFIVQHCQLLCDVVRSTYVSNSLFQRDK 544
           +F      LL DV+ STY S  LF+  K
Sbjct: 859 LFASLQYPLLADVINSTYGSRFLFEPRK 886

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/542 (46%), Positives = 343/542 (63%), Gaps = 18/542 (3%)

Query: 7   LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG 66
           L LYRA+L GDW  A    ++H G   A IS+  +TALHI+A A++  FV+ELV+RM   
Sbjct: 195 LPLYRASLKGDWEKANEFLNLHPGAENAMISRGWETALHISAGARRTKFVEELVKRMRTT 254

Query: 67  DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVV 126
           DL  +N    TAL FAAASG+ ++A+ ++  N+ +   +  + V P+ +A  LG  DMV 
Sbjct: 255 DLEIQNKDNNTALCFAAASGVTKIAKLMVDRNRNLPVIRGSEGVTPLYIATLLGQRDMVW 314

Query: 127 YLYGQTKNS-LNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALAR 185
           YLY  T +  L  ED   LL+  I TDLYD AL V E    + A     N ETALH LA+
Sbjct: 315 YLYSVTNHEILKTEDYFSLLIAAISTDLYDFALHVLE-CQPQLATYHGLNGETALHVLAK 373

Query: 186 KNLNYSHFTKQYQ-----------RGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRIS 234
           K    S FT   Q            GF + +  +    +ALKLVQRLWE +V   + +  
Sbjct: 374 KP---SSFTSGIQLGIWERCIYPLPGFEAVQKKKTLNAQALKLVQRLWELIVSSDEIQHG 430

Query: 235 NLIAEP--ELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLI 292
           +LI  P    +F AA  G  E ++ L+  YPDL+W +D    ++FH A++HR+++IF LI
Sbjct: 431 DLIKSPLSRPLFIAAESGIPEIVIELLYSYPDLLWKVDGQNRSLFHIAIMHRQEKIFNLI 490

Query: 293 YQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQR 352
           Y IGA KDLI  + D   +NILHLA  L P ++L++VSGAALQMQRELLWF+EVEK +Q 
Sbjct: 491 YDIGAHKDLITSYRDNNNHNILHLAGKLAPSEQLHVVSGAALQMQRELLWFKEVEKIIQP 550

Query: 353 RSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGG 412
              E K+  G +P+ LFT +H+ L ++GEKW+K+TA+SCMLVATLI TV+FAA FTVPGG
Sbjct: 551 LFKEIKDSQGRTPQMLFTEEHKELAKEGEKWLKNTASSCMLVATLITTVMFAAIFTVPGG 610

Query: 413 NKGDTGFPFFLEKVSFKIFAISEAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLI 472
           N  + G+P F+   SFK+FA+S+A++L SS  S++ FLSILTSRY ++DFL  LP++L +
Sbjct: 611 NNNNNGYPIFMHTTSFKVFALSDALALFSSVISVLMFLSILTSRYAQEDFLVSLPRRLSV 670

Query: 473 GLATLFVSIAAMMVVFSAAFFIVFKDSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRS 532
           G+ATLF SI  M++ F A FFIV      W+ I  T++A IP I+F +    LL D +  
Sbjct: 671 GIATLFFSIITMLIAFGATFFIVLGHQLAWIVIPTTLVACIPAILFALLQFPLLVDTISC 730

Query: 533 TY 534
           TY
Sbjct: 731 TY 732

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.587	0.974	0.388	3.4e-61
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.829	0.831	0.304	4.9e-53
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.570	0.490	0.297	6.1e-46
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.871	0.801	0.277	2.7e-45
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.594	0.567	0.300	3.3e-45
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.241	0.492	0.421	6.9e-22
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.436	0.417	0.237	5e-05
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.186	0.176	0.259	6.3e-05
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.459	0.232	0.277	6.9e-05
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.459	0.140	0.277	0.00012

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 134/345 (38%), Positives = 184/345 (53%)

Query:   211 RQKALKLVQRLWEKVVLLSDSRISNLI-AEPELIFDAARQGNLEFLLILIREYPDLIWNI 269
             R  A  +V+ LW  V+ L    IS  + + P L+FDAA+ GNLE LLILIR YPDLIW +
Sbjct:     2 RTLAHMVVEELWSFVIKLPVEEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWTV 61

Query:   270 DENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKN-NILHLAAMLPPQDRLNI 328
             D    ++FH A ++R ++IF  IY++GA KDLI  +++ + N N+LHL A LPP +RL +
Sbjct:    62 DHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQV 121

Query:   329 VSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTA 388
             VSGAALQMQRE+LW++ V++ V R   + KN+       LFT++H+NLR++GEKWMK+TA
Sbjct:   122 VSGAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKETA 181

Query:   389 TSCMXXXXXXXXXXXXXXXXXPGGN--KGDT---GFPFFLEKVSFKIFXXXXXXXXXXXX 443
             T+C+                 PGGN   GD    GFP F ++  F++F            
Sbjct:   182 TACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSV 241

Query:   444 XXXVNFLSILTSRYTEXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXKDSRLWV 503
                + FLSILTSRY E                  F                       W 
Sbjct:   242 TSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKWS 301

Query:   504 AILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRDKISLF 548
              IL+  +AS   + F+V H QL  D +RS Y+S  LF   K  L+
Sbjct:   302 LILLVYVASATALSFVVLHFQLWFDTLRSAYLSKFLFHGRKSGLY 346

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 152/500 (30%), Positives = 228/500 (45%)

Query:    59 LVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKA--IATEQDDKRVLPIDLA 116
             L+ R E   + Q       AL  A A+   +  R ++       ++ +  D    P+  A
Sbjct:    69 LISRKECNVVEQITGNSEIALHIAVAAKHKDFVRNLLREMDPPDLSLKNKDGNT-PLSFA 127

Query:   117 ASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANE 176
             A+LG  +    L    ++ L D      +  +    LY     V + L  K++I +  N+
Sbjct:   128 AALGDIETAEMLINMIRD-LPDISNEKTMTPIHIAALYGHGEMV-QYLFSKTSI-KDLND 184

Query:   177 ETAL---HALARKNLNYSHFTK----QYQRGFFSAKDIE--NKRQKALKLVQRLWEKVVL 227
             +  L   H +   ++ Y  F        +R     K++       KAL L+ R    +  
Sbjct:   185 QQYLNLFHTMISADI-YGVFADVPLWMLERVDLYRKELALYPNSNKALHLLARKTSAISH 243

Query:   228 LSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKR 287
              S   +   +A   L+FDAA  GN+E L+ILIR + DL+W +D N  T+FH A L+R + 
Sbjct:   244 KSQLNLFQQVASSWLLFDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHEN 303

Query:   288 IFKLIYQIGAAKDLILKFEDPK-KNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEV 346
             IF LIY++G  KDLI  +++ + K+ +LHL A LPP +R  + SGAAL MQ+ELLWF+ V
Sbjct:   304 IFSLIYELGGIKDLIASYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAV 363

Query:   347 EKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSCMXXXXXXXXXXXXXX 406
             ++ V R   E KN  G     +FT +HENLR++GE+WMK+TAT+CM              
Sbjct:   364 KEIVPRSYIETKNTKGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAA 423

Query:   407 XXXPGGN--KGDT----GFPFFLEKVSFKIFXXXXXXXXXXXXXXXVNFLSILTSRYTEX 460
                PGGN   GD     GFP F +++ F IF               V FLSI TSRY E 
Sbjct:   424 ITIPGGNDDSGDKANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEE 483

Query:   461 XXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXKDSRLWVAILVTVIASIPVIMFIV 520
                              F                   +      +L++ +AS+  + F  
Sbjct:   484 DFRYDLPTKLMFGLSALFISIISMILAFTFSMILIRVEKASLSLVLISCLASLTALTFAY 543

Query:   521 QHCQLLCDVVRSTYVSNSLF 540
              +  L  + +RS Y+S  LF
Sbjct:   544 LYFHLWFNTLRSVYISMFLF 563

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 6.1e-46, Sum P(2) = 6.1e-46
 Identities = 99/333 (29%), Positives = 154/333 (46%)

Query:   213 KALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNI-DE 271
             +A KL+  + E+ + L     S  + E  L+F A R GN++FL+ +IR   +L+W+    
Sbjct:   335 QAKKLLLGISEETLALGLKERSETVDEA-LLF-AVRYGNVDFLVEMIRNNSELLWSTRTS 392

Query:   272 NGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSG 331
             +  T+F  AV  R++++F L+Y +   K L+L  +D   N +LHLA    P  +L+ V G
Sbjct:   393 SSSTLFLLAVEFRQEKVFSLLYGLDDRKYLLLADKDCDGNGVLHLAGFPSPPSKLSSVVG 452

Query:   332 AALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKDTATSC 391
             A LQ+QREL WF+EVE+       E  N +  +P  +FT++H+ LR++ EKWMKDTA SC
Sbjct:   453 APLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSC 512

Query:   392 MXXXXXXXXXXXXXXXXXPGGNKGDT-GFPFFLEKVSFKIFXXXXXXXXXXXXXXXVNFL 450
                               PGG   ++ G PF L    F IF               + FL
Sbjct:   513 SLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFL 572

Query:   451 SILTSRYTEXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXKDSRLWVAILVTVI 510
              ILT+RY+                   F                       W+     + 
Sbjct:   573 GILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILF 632

Query:   511 ASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRD 543
             A +P ++F++    LL +++ STY    +F R+
Sbjct:   633 ACLPALLFVLLQYPLLKEMIFSTY-GKGIFDRN 664

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 145/523 (27%), Positives = 228/523 (43%)

Query:    41 DTALHIAAAAKQYGFVKELVQRMEPGDLA---QENNVGYTALFFAAASGMVELAREIMTH 97
             +T L  A A      VK L++RM P  +     +NN   T L   A SG +E+A  ++  
Sbjct:   110 ETPLLKACAYGNPEIVKLLLRRMTPEQMLPKMSQNNFYNTPLTVVAVSGNMEIAEALVAK 169

Query:    98 NKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLY-- 154
             N  +     +   +P+ +A      +M  YLY +T    L ++D  H ++  +    Y  
Sbjct:   170 NPKLLEIPGNNGEIPVVVAVENTQMEMARYLYNRTPVQVLLEKDGFHGILLFLNAIYYKK 229

Query:   155 -DVALRVFEDLHEKSAIGRAANEETALHALARK-----NLNYSHFTKQYQR--GFFSAKD 206
              D+AL +F      +       E   +  LA K     +       K   +  G      
Sbjct:   230 LDMALDLFNKSRRLAVTKHLRIESVPIIVLASKPDLFPDTLMGKVLKCLSKCIGIDEVYR 289

Query:   207 IENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLI 266
             ++    +A KL++ + E+ + L     S  + E  L+F A R GN++FL+ +I+   +L+
Sbjct:   290 LKVMHLQAKKLLKGISEETLALGLKERSESVDEA-LLF-AVRYGNVDFLVEMIKNNSELL 347

Query:   267 WNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRL 326
             W+   +  T+F+TAV  R++++F L+Y +G  K L L  +D   N++LHLA   PP  +L
Sbjct:   348 WSTGTS--TLFNTAVQVRQEKVFSLLYGLGDRKYLFLADKDSDGNSVLHLAGYPPPNYKL 405

Query:   327 NIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLREQGEKWMKD 386
               V  A LQMQREL WF+E+E+ V     E  N + L+P  +F ++HE +R + EKWMKD
Sbjct:   406 ATVVSATLQMQRELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKD 465

Query:   387 TATSCMXXXXXXXXXXXXXXXXXPGGNKGDTGF-PFFLEKVSFKIFXXXXXXXXXXXXXX 445
             TA SC                  PGG   ++G  PF   +  F IF              
Sbjct:   466 TAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTS 525

Query:   446 XVNFLSILTSRYTEXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXKDSRLWVAI 505
              + FL ILT+RY                    F                   D   W+  
Sbjct:   526 VLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDP--WIVA 583

Query:   506 LVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRDKISLF 548
                  A  P ++F++    LL +++ STY    +F R+  SLF
Sbjct:   584 PTIFFACFPALLFVMIQYPLLKELIFSTY-GKRIFDRNMKSLF 625

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 104/346 (30%), Positives = 165/346 (47%)

Query:   200 GFFSAKDIENKRQKALKLVQRLWEKVV-LLSDSRISNLIAEPELIFDAARQGNLEFLLIL 258
             G     D++ +  +A KL++++   +  +++ + I       E + +AA+ GN +F + +
Sbjct:   254 GIKQTYDLKKRHSQAQKLLKQMCTSLRDIMAKNEIRWKETVYEALLEAAKSGNRDFFIEI 313

Query:   259 IREYPDLIWNIDE-NGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLA 317
             I+    L+W ++  +G  +F  AV  ++++IF LI+ +   K  +L+  D   NNILH+A
Sbjct:   314 IKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSYDKGNNNILHIA 373

Query:   318 AMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHENLR 377
               L   D+L+ +SGAAL+MQRE  WF+EVE  V  R    KN+D  +PR +F   HE+LR
Sbjct:   374 GRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHLR 433

Query:   378 EQGEKWMKDTATSCMXXXXXXXXXXXXXXXXXPGGNKGDTGFPFFLEKVSFKIFXXXXXX 437
             ++GE+WMK TAT+C                  PGG  G +G P  L  + F+ F      
Sbjct:   434 KEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTL 493

Query:   438 XXXXXXXXXVNFLSILTSRYTEXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXK 497
                      + FLSILTSRY+                   F                  +
Sbjct:   494 AFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSLSASMR 553

Query:   498 DSRLWVAILVTVIASIPVIMFIVQHCQLLCDVVRSTYVSNSLFQRD 543
                  V  L   +AS P ++F++    LL +++ STY    LF RD
Sbjct:   554 HKPALVYPLKP-LASFPSLLFLMLQYPLLKEMISSTY-GKRLFYRD 597

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 6.9e-22, P = 6.9e-22
 Identities = 59/140 (42%), Positives = 81/140 (57%)

Query:    16 GDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVG 75
             GDW  A GI    +  I   I+ + +T LHIA AAK  GFV+ L+  +E  DLA  N  G
Sbjct:    98 GDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEGFVRNLLGSLESNDLALRNVDG 157

Query:    76 YTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-N 134
              TAL FAAASG+VE+A+ ++  NK +   +   +  PI +AA  GH +MV YLY  T+  
Sbjct:   158 NTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHGEMVKYLYKNTRFR 217

Query:   135 SLNDEDRSHLLVTLIQTDLY 154
               NDE+  +L   +I  D+Y
Sbjct:   218 EFNDEEFVNLFHAVISADIY 237

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 65/274 (23%), Positives = 118/274 (43%)

Query:    23 GIYDVHEGEI--RAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF 80
             G+ +  E  +  R+      +T LH+AA       V ++++ + P  L+  N  G T L 
Sbjct:    18 GLVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVAKIIE-LRPSLLSSRNAYGDTPLH 76

Query:    81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDED 140
              AA  G V +  +++     + + +++K   P+ LA      +   ++  +T NS+ D D
Sbjct:    77 LAALLGDVNIVMQMLDTGLELYSARNNKNQTPLHLAFVSIFMEAAKFIVEKT-NSV-DLD 134

Query:   141 RSHLLVTLIQTDLYDVALRVFEDLHEKSAIG-RAANEETALH-ALARKNLNYSHFTKQYQ 198
               +  ++   T +  + L  F +L  K+A      +  T LH A  + +L  +       
Sbjct:   135 ELNFALSSGSTCIVGIILERFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSILLGLN 194

Query:   199 RGFFSAKDIENKRQKALKL-VQRLWEKVVLLSD----SRISNLIAEP--ELIFD-AARQG 250
             +G   A  + +K    L L VQR    V++L +    S +S  +  P  E +F  AAR  
Sbjct:   195 QGLEEA--LNSKGLSPLHLAVQR--GSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNK 250

Query:   251 NLEFLLILIREY----PDLIWNIDENGYTIFHTA 280
             N +  + +        P L+   D+ G T+ H A
Sbjct:   251 NTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIA 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
 Identities = 28/108 (25%), Positives = 50/108 (46%)

Query:    36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIM 95
             +++  +T L  AA       VKEL+       L Q+N  G+ AL  A + G   + + ++
Sbjct:   139 VNELGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIVQLLL 198

Query:    96 THNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSH 143
              H   ++         P+  AA+ GH ++V  L  +  +SL +  RS+
Sbjct:   199 EHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKD-SSLLEISRSN 245

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 132 (51.5 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 86/310 (27%), Positives = 142/310 (45%)

Query:    27 VHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG 86
             +H+  I    +K+ +TALHIAA A Q   V+ELV      ++  ++  G+T L+ AA   
Sbjct:    64 LHKEIILETTTKKGNTALHIAALAGQDEVVRELVNY--GANVNAQSQKGFTPLYMAAQEN 121

Query:    87 MVELAREIMTH--NKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSL------ 136
              +E+ + ++ +  N+ +ATE       P+ +A   GHE++V +L  YG TK  +      
Sbjct:   122 HLEVVKFLLENGANQNVATEDG---FTPLAVALQQGHENVVAHLINYG-TKGKVRLPALH 177

Query:   137 ----NDEDRSHLLVTLIQTDLY-DVALRV-FEDLHEKSAIGRAANEETALHALARKNLNY 190
                 ND+ R+     L+Q D   DV  +  F  LH       AA+ E    A    N   
Sbjct:   178 IAARNDDTRT--AAVLLQNDPNPDVLSKTGFTPLHI------AAHYENLNVAQLLLNRGA 229

Query:   191 S-HFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQ 249
             S +FT Q   G  +   I ++R   + +V+ L ++   + ++R  + +  P  +  AAR 
Sbjct:   230 SVNFTPQ--NGI-TPLHIASRRGNVI-MVRLLLDRGAQI-ETRTKDELT-P--LHCAARN 281

Query:   250 GNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA-KDLILKFEDP 308
             G+L    IL+ ++   I    +NG +  H A         +L+ Q  A   D+ L    P
Sbjct:   282 GHLRISEILL-DHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTP 340

Query:   309 KKNNILHLAA 318
                  LH+AA
Sbjct:   341 -----LHVAA 345

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 132 (51.5 bits), Expect = 0.00012, P = 0.00012
 Identities = 86/310 (27%), Positives = 142/310 (45%)

Query:    27 VHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG 86
             +H+  I    +K+ +TALHIAA A Q   V+ELV      ++  ++  G+T L+ AA   
Sbjct:    98 LHKEIILETTTKKGNTALHIAALAGQDEVVRELVNY--GANVNAQSQKGFTPLYMAAQEN 155

Query:    87 MVELAREIMTH--NKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSL------ 136
              +E+ + ++ +  N+ +ATE       P+ +A   GHE++V +L  YG TK  +      
Sbjct:   156 HLEVVKFLLENGANQNVATEDG---FTPLAVALQQGHENVVAHLINYG-TKGKVRLPALH 211

Query:   137 ----NDEDRSHLLVTLIQTDLY-DVALRV-FEDLHEKSAIGRAANEETALHALARKNLNY 190
                 ND+ R+     L+Q D   DV  +  F  LH       AA+ E    A    N   
Sbjct:   212 IAARNDDTRT--AAVLLQNDPNPDVLSKTGFTPLHI------AAHYENLNVAQLLLNRGA 263

Query:   191 S-HFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQ 249
             S +FT Q   G  +   I ++R   + +V+ L ++   + ++R  + +  P  +  AAR 
Sbjct:   264 SVNFTPQ--NGI-TPLHIASRRGNVI-MVRLLLDRGAQI-ETRTKDELT-P--LHCAARN 315

Query:   250 GNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA-KDLILKFEDP 308
             G+L    IL+ ++   I    +NG +  H A         +L+ Q  A   D+ L    P
Sbjct:   316 GHLRISEILL-DHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTP 374

Query:   309 KKNNILHLAA 318
                  LH+AA
Sbjct:   375 -----LHVAA 379

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	575
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.001
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  109 bits (275), Expect = 1e-28
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 13/121 (10%)

Query: 381 EKWMKDTATSCMLVATLIATVVFAAAFTVPGG-----NKGDTGFPFFLEK-VSFKIFAIS 434
            +W++ T  S ++VATLIATV FAA FT PGG          G P    K   FK F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 435 EAISLVSSSASIVNFLSILTSRYTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFI 494
             I+ V+S  +++  L I+ S             +LL  L  L++S+ ++MV F+A  + 
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRL-------PRLLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 495 V 495
           V
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 18  WAVARGIYDV-----HEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN 72
            A + G  +V       G           T LH+AA       VK L+++    D+   +
Sbjct: 13  LAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK--GADVNARD 70

Query: 73  NVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             G T L  AA +G +++ + ++ H  A    +D     P+ LAA  GH ++V  L
Sbjct: 71  KDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
           T LH+AA+      VK L++     D+  ++N G T L  AA +G +E+ + ++    A 
Sbjct: 9   TPLHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GAD 65

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS 142
              +D     P+ LAA  G+ D+V  L  +G   N+ + + R+
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRT 108

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 10/120 (8%)

Query: 72  NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--Y 129
           +  G T L  AA++G +E+ + ++ +  A    +D+    P+ LAA  GH ++V  L   
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 130 GQTKNSLNDEDRS--HLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187
           G   N+ + +  +  HL       D+  + L+   D++ +   GR     T LH  A+  
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGR-----TPLHLAAKNG 117

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 9  LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL 68
          L+ AA  G+  + + + +    ++        DTALH+AA       VK L++     D+
Sbjct: 1  LHLAAKNGNLELVKLLLE-KGADVNL---GDTDTALHLAARNGNLEIVKLLLEHG--ADV 54

Query: 69 AQENNVGYTALFFAAASGMVELAREIMTHN 98
            ++  G TAL  AA +G +E+ + ++ H 
Sbjct: 55 NAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
           AA  G+LE + +L+    D +   D +G T  H A  +    I KL+ + GA  +     
Sbjct: 14  AASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR--- 69

Query: 306 EDPKKNNILHLAAM 319
            D   N  LHLAA 
Sbjct: 70  -DKDGNTPLHLAAR 82

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 44  LHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIAT 103
           LH+AA       VK L+++    D+   +    TAL  AA +G +E+ + ++ H   +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA--DVNLGDT--DTALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 104 EQDDKRVLPIDLAASLGHEDMVVYL 128
            +D      + LAA  G+ ++V  L
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 36  ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGM-----VEL 90
                   LH AA+      VK L+      D+  ++  G T L  AA +G      +E+
Sbjct: 69  RDLDGRLPLHSAASKGDDKIVKLLLASGA--DVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 91  AREIMTHN--KAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHL 144
           A+ ++       +   +D+    P+  AA  G  D+V  L   G   NS N    + L
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTAL 184

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
           AA+ G+LE + +L+ +  D+    D++G T  H A  +    + KL+ + GA  +     
Sbjct: 47  AAKNGHLEIVKLLLEKGADVNA-RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR--- 102

Query: 306 EDPKKNNILHLAAM 319
            D      LHLAA 
Sbjct: 103 -DKDGRTPLHLAAK 115

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF 305
           AA+ GNLE + +L+ +  D+  N+ +   T  H A  +    I KL+ + GA  +     
Sbjct: 4   AAKNGNLELVKLLLEKGADV--NLGDTD-TALHLAARNGNLEIVKLLLEHGADVNAK--- 57

Query: 306 EDPKKNNILHLAAM 319
            D   N  LHLAA 
Sbjct: 58  -DKDGNTALHLAAR 70

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 235 NLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ 294
           NL      +  AAR GNLE + +L+    D+    D++G T  H A  +    I KL+ +
Sbjct: 24  NLGDTDTALHLAARNGNLEIVKLLLEHGADVN-AKDKDGNTALHLAARNGNLEIVKLLLE 82

Query: 295 IGAAKDL 301
            GA  +L
Sbjct: 83  HGADINL 89

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	575
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	99.98
PHA02792	631	ankyrin-like protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
PF13962	113	PGG: Domain of unknown function	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.83
PHA02743	166	Viral ankyrin protein; Provisional	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0514	452	consensus Ankyrin repeat protein [General function	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.81
PHA02741	169	hypothetical protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.74
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.64
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.47
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.39
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.3
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.29
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.27
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.2
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.2
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.0
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.82
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.75
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.57
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.57
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.56
PF13606	30	Ank_3: Ankyrin repeat	98.51
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.5
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.48
PF13606	30	Ank_3: Ankyrin repeat	98.42
KOG0522	560	consensus Ankyrin repeat protein [General function	98.39
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.38
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.33
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.3
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.21
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.16
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.05
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.01
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.8
KOG0511	516	consensus Ankyrin repeat protein [General function	97.79
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.76
KOG2384	223	consensus Major histocompatibility complex protein	97.74
KOG2384	223	consensus Major histocompatibility complex protein	97.74
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.69
KOG0511	516	consensus Ankyrin repeat protein [General function	97.58
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.09
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.93
KOG2505	591	consensus Ankyrin repeat protein [General function	95.3
KOG2505	591	consensus Ankyrin repeat protein [General function	95.03
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.55
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.94
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.35
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.17
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	89.23
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.03
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	88.44
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.44

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-43  Score=361.75  Aligned_cols=310  Identities=19%  Similarity=0.203  Sum_probs=275.6

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      ..|++|||+|+....++.++.+++ .|++.... +.++.+|+|+|+..|+.+..+.|+++  +.|++..|..|.||||.|
T Consensus        86 ~~~n~~l~~a~~~~~~~~i~~Lls-~gad~~~~-n~~~~aplh~A~~~~~~s~L~~Ll~~--~~dvnl~de~~~TpLh~A  161 (929)
T KOG0510|consen   86 SADNTPLHAAVEYNQGDKIQVLLS-YGADTPLR-NLNKNAPLHLAADSGNYSCLKLLLDY--GADVNLEDENGFTPLHLA  161 (929)
T ss_pred             cccCchhHHHhhcchHHHHHHHHh-cCCCCChh-hhhccCchhhccccchHHHHHHHHHh--cCCccccccCCCchhhHH
Confidence            478999999999999999999998 58998887 99999999999999999999999999  899999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHh-----ccc-cccCcCchhhHHHHHHHhCcHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYG-----QTK-NSLNDEDRSHLLVTLIQTDLYDV  156 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-----~~~-~~~~~~~g~t~L~~a~~~~~~~~  156 (575)
                      |..++.|..+.|++.|++. ...|.+|.+|+|.|+++|..|..+..+.     +.. .+..+.++.+|||.|+..|+.++
T Consensus       162 ~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~  240 (929)
T KOG0510|consen  162 ARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEM  240 (929)
T ss_pred             HhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHH
Confidence            9999999989999999996 8999999999999999999999999998     333 77889999999999999999999


Q ss_pred             HHHHHHhh-------------hccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHH
Q 037778          157 ALRVFEDL-------------HEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWE  223 (575)
Q Consensus       157 ~~~Ll~~~-------------~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~  223 (575)
                      ++..|+..             ...+++..|.+|.||||+|++.|+                          .+.++.|+.
T Consensus       241 lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~--------------------------~~svd~Ll~  294 (929)
T KOG0510|consen  241 LKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGG--------------------------PESVDNLLG  294 (929)
T ss_pred             HHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCC--------------------------hhHHHHHHH
Confidence            99998761             123455679999999999999994                          899999999


Q ss_pred             HhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHH-HCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhh
Q 037778          224 KVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIR-EYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLI  302 (575)
Q Consensus       224 ~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~-~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l  302 (575)
                      .|++++.++    ..+.||||.||..|+.+.++.|++ .+-.+.+..|..|+||||+|+++||.+++++|++.|++...+
T Consensus       295 ~Ga~I~~kn----~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~  370 (929)
T KOG0510|consen  295 FGASINSKN----KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNM  370 (929)
T ss_pred             cCCcccccC----CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcc
Confidence            999999887    344599999999999999999999 666667888999999999999999999999999999987521


Q ss_pred             hhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhH
Q 037778          303 LKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRA  367 (575)
Q Consensus       303 ~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~  367 (575)
                       .+.|.+|+||||+|+..|+...++.+                   +.+|+++..+|++|+|+++
T Consensus       371 -~e~D~dg~TaLH~Aa~~g~~~av~~L-------------------i~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  371 -SEADSDGNTALHLAAKYGNTSAVQKL-------------------ISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             -cccccCCchhhhHHHHhccHHHHHHH-------------------HHcCCceeecccccccccc
Confidence             24699999999999999998877665                   4466666666666666666

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-43  Score=388.59  Aligned_cols=330  Identities=14%  Similarity=0.115  Sum_probs=259.0

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHH----------------------------------
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAA----------------------------------   48 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa----------------------------------   48 (575)
                      ..++||||+|+..|+.|+|+.|++++|..+... |..|.||||+|+                                  
T Consensus        39 ~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~-~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  117 (682)
T PHA02876         39 SIPFTAIHQALQLRQIDIVEEIIQQNPELIYIT-DHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKL  117 (682)
T ss_pred             cccchHHHHHHHHHhhhHHHHHHHhCcccchhh-chhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHH
Confidence            357899999999999999999999988766665 889999999666                                  


Q ss_pred             ------------------------------------HcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHH
Q 037778           49 ------------------------------------AAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAR   92 (575)
Q Consensus        49 ------------------------------------~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~   92 (575)
                                                          ..|+.+++++|++.  |++++.+|..|.||||+|++.|+.++|+
T Consensus       118 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~--Gadvn~~d~~G~TpLh~Aa~~G~~~iv~  195 (682)
T PHA02876        118 DEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG--GADVNAKDIYCITPIHYAAERGNAKMVN  195 (682)
T ss_pred             HHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                                                55788999999999  9999999999999999999999999999


Q ss_pred             HHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc------------------------------cccCcCchh
Q 037778           93 EIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK------------------------------NSLNDEDRS  142 (575)
Q Consensus        93 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~------------------------------~~~~~~~g~  142 (575)
                      +|+++|+++ +..+..|.||||+|+..|+.+++++|++.+.                              .+..+..|.
T Consensus       196 ~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~  274 (682)
T PHA02876        196 LLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKN  274 (682)
T ss_pred             HHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            999999997 8899999999999999999998888776543                              233566899


Q ss_pred             hHHHHHHHhCcH-HHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhc---------cchhhhHhhH
Q 037778          143 HLLVTLIQTDLY-DVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFF---------SAKDIENKRQ  212 (575)
Q Consensus       143 t~L~~a~~~~~~-~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  212 (575)
                      ||||+|+..++. ++++.|++.  +.+++.+|.+|.||||+|+..|..     ...++.+.         +....++.|.
T Consensus       275 TpLh~Aa~~~~~~~iv~lLl~~--gadin~~d~~g~TpLh~Aa~~g~~-----~~~v~~Ll~~gadin~~d~~g~TpLh~  347 (682)
T PHA02876        275 TPLHHASQAPSLSRLVPKLLER--GADVNAKNIKGETPLYLMAKNGYD-----TENIRTLIMLGADVNAADRLYITPLHQ  347 (682)
T ss_pred             CHHHHHHhCCCHHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhCCC-----HHHHHHHHHcCCCCCCcccCCCcHHHH
Confidence            999999999886 577777776  899999999999999999998731     11111110         1112233333


Q ss_pred             HH-----HHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCC-h
Q 037778          213 KA-----LKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRR-K  286 (575)
Q Consensus       213 ~~-----~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~-~  286 (575)
                      ++     .++++.|++.|++++..+    ..|.||||+|+..|+.++++.|+++|++ ++..+..|.||||+|+..++ .
T Consensus       348 A~~~~~~~~iv~lLl~~gadin~~d----~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~  422 (682)
T PHA02876        348 ASTLDRNKDIVITLLELGANVNARD----YCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPY  422 (682)
T ss_pred             HHHhCCcHHHHHHHHHcCCCCccCC----CCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHH
Confidence            32     456777777777777655    3344888888888888888888888877 67777778888888776554 4


Q ss_pred             hHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCC-CCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCCh
Q 037778          287 RIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLP-PQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSP  365 (575)
Q Consensus       287 ~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~-~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tp  365 (575)
                      .++++|+++|++++.    +|.+|+||||+|+..+ +.++++.|                   +..|++++.+|.+|.||
T Consensus       423 ~~vk~Ll~~gadin~----~d~~G~TpLh~Aa~~~~~~~iv~lL-------------------l~~Gad~n~~d~~g~tp  479 (682)
T PHA02876        423 MSVKTLIDRGANVNS----KNKDLSTPLHYACKKNCKLDVIEML-------------------LDNGADVNAINIQNQYP  479 (682)
T ss_pred             HHHHHHHhCCCCCCc----CCCCCChHHHHHHHhCCcHHHHHHH-------------------HHCCCCCCCCCCCCCCH
Confidence            567777887777654    7888888888887765 33444433                   34899999999999999


Q ss_pred             hHHHHH
Q 037778          366 RALFTR  371 (575)
Q Consensus       366 l~~a~~  371 (575)
                      +++|.+
T Consensus       480 l~~a~~  485 (682)
T PHA02876        480 LLIALE  485 (682)
T ss_pred             HHHHHH
Confidence            999875

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.9e-42  Score=356.07  Aligned_cols=302  Identities=12%  Similarity=0.071  Sum_probs=191.9

Q ss_pred             chHHHHHHH--cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            6 RLKLYRAAL--TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         6 ~t~L~~Aa~--~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .++||.++.  .++.++++.|++ .+.+++.+ |.+|.||||+|+..|+.++|+.|+++  |++++.+|.+|.||||+|+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~-~Gadvn~~-d~~G~TpLh~Aa~~g~~eiv~lLL~~--GAdin~~d~~g~TpLh~A~  113 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLH-RGYSPNET-DDDGNYPLHIASKINNNRIVAMLLTH--GADPNACDKQHKTPLYYLS  113 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHH-CcCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHH
Confidence            466666543  335566666665 46666665 66677777777777777777777776  6777777777777777766


Q ss_pred             HcC--CHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCc--HHHHH
Q 037778           84 ASG--MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL--YDVAL  158 (575)
Q Consensus        84 ~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~--~~~~~  158 (575)
                      ..+  +.+++++|+++|+++....|..|.|||| |+..|+.+++++|++.++ .+..|..|.||||.|+..++  .++++
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHH
Confidence            554  3566777777777653345666777775 455566777777777666 56666677777776665433  46666


Q ss_pred             HHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccC
Q 037778          159 RVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIA  238 (575)
Q Consensus       159 ~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~  238 (575)
                      +|++.  +.+++.+|.+|.||||+|+..+..                        ..++++.|++ +++++..+    ..
T Consensus       193 ~Ll~~--Gadin~~d~~G~TpLH~Aa~~~~~------------------------~~~iv~lLl~-gadin~~d----~~  241 (446)
T PHA02946        193 WMMKL--GISPSKPDHDGNTPLHIVCSKTVK------------------------NVDIINLLLP-STDVNKQN----KF  241 (446)
T ss_pred             HHHHc--CCCCcccCCCCCCHHHHHHHcCCC------------------------cHHHHHHHHc-CCCCCCCC----CC
Confidence            66665  666667777777777777765410                        1456666653 56665544    23


Q ss_pred             CChHHHHHHHcCC-HHHHHHHHHHCCCc-------------------cccc-cCCCCchHHHHHHcCChhHHHHHHhcCc
Q 037778          239 EPELIFDAARQGN-LEFLLILIREYPDL-------------------IWNI-DENGYTIFHTAVLHRRKRIFKLIYQIGA  297 (575)
Q Consensus       239 ~~tpLh~Aa~~g~-~~iv~~Ll~~~~d~-------------------~~~~-d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  297 (575)
                      |.||||+|++.++ .++++.|++++.+.                   ++.. +..|+||||+|+++|+.+++++|+++|.
T Consensus       242 G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~  321 (446)
T PHA02946        242 GDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI  321 (446)
T ss_pred             CCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            3477777777666 36666666665431                   0111 1235577777777777777777776442


Q ss_pred             chhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHHHhhH
Q 037778          298 AKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHE  374 (575)
Q Consensus       298 ~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~~~~  374 (575)
                                 +|+||||+|+..++.++++.|                   +..+++++.+ .+|+||+++|.+...
T Consensus       322 -----------~~~t~L~~A~~~~~~~~v~~L-------------------l~~ga~~n~~-~~G~t~l~~a~~~~~  367 (446)
T PHA02946        322 -----------ICEDAMYYAVLSEYETMVDYL-------------------LFNHFSVDSV-VNGHTCMSECVRLNN  367 (446)
T ss_pred             -----------ccccHHHHHHHhCHHHHHHHH-------------------HHCCCCCCCc-cccccHHHHHHHcCC
Confidence                       456677777766665554444                   4488899986 589999999976543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1e-40  Score=347.66  Aligned_cols=281  Identities=13%  Similarity=0.072  Sum_probs=239.6

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCC--HHHHHHHHHcCCCCCccc-cccCCChH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQ--YGFVKELVQRMEPGDLAQ-ENNVGYTA   78 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~--~~~v~~Ll~~~~~~~l~~-~d~~g~Tp   78 (575)
                      +.+|+||||+|+..|+.++++.|++ ++++++.+ |.+|.||||+|+..++  .+++++|+++  |++++. .|.+|.||
T Consensus        69 d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~-d~~g~TpLh~A~~~~~~~~e~v~lLl~~--Gadin~~~d~~g~tp  144 (446)
T PHA02946         69 DDDGNYPLHIASKINNNRIVAMLLT-HGADPNAC-DKQHKTPLYYLSGTDDEVIERINLLVQY--GAKINNSVDEEGCGP  144 (446)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCC-CCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCcccccCCCCCcH
Confidence            5689999999999999999998888 68999987 9999999999998764  8999999999  899985 68999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcC--ChHHHHHHHhccc-cccCcCchhhHHHHHHHhC--c
Q 037778           79 LFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLG--HEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTD--L  153 (575)
Q Consensus        79 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~--~  153 (575)
                      || |+..|+.++++.|++.|+++ +..|..|.||||+|+..+  +.+++++|++.|+ .+..|.+|.||||+|+..+  +
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc
Confidence            98 67789999999999999997 999999999999998765  4689999999999 8889999999999999876  7


Q ss_pred             HHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh-
Q 037778          154 YDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR-  232 (575)
Q Consensus       154 ~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~-  232 (575)
                      .++++.|+ .  +.+++.+|.+|.||||+|+..++                         ..++++.|++.|...+... 
T Consensus       223 ~~iv~lLl-~--gadin~~d~~G~TpLh~A~~~~~-------------------------~~~~~~~Ll~~g~~~~~~~~  274 (446)
T PHA02946        223 VDIINLLL-P--STDVNKQNKFGDSPLTLLIKTLS-------------------------PAHLINKLLSTSNVITDQTV  274 (446)
T ss_pred             HHHHHHHH-c--CCCCCCCCCCCCCHHHHHHHhCC-------------------------hHHHHHHHHhCCCCCCCcHH
Confidence            88998887 3  68899999999999999999873                         1345555555544321110 


Q ss_pred             --------------hh--cccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 037778          233 --------------IS--NLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIG  296 (575)
Q Consensus       233 --------------~~--~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  296 (575)
                                    ..  ....+.||||+|+.+|+.+++++|+++++        .|+||||+|+.+++.+++++|+++|
T Consensus       275 ~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~~~~~v~~Ll~~g  346 (446)
T PHA02946        275 NICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSEYETMVDYLLFNH  346 (446)
T ss_pred             HHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhCHHHHHHHHHHCC
Confidence                          00  01123499999999999999999999864        4789999999999999999999999


Q ss_pred             cchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          297 AAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       297 ~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      ++++.    + .+|+||||+|+..++.++++.+
T Consensus       347 a~~n~----~-~~G~t~l~~a~~~~~~~~~~~l  374 (446)
T PHA02946        347 FSVDS----V-VNGHTCMSECVRLNNPVILSKL  374 (446)
T ss_pred             CCCCC----c-cccccHHHHHHHcCCHHHHHHH
Confidence            99863    4 5899999999999998877766

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-40  Score=346.25  Aligned_cols=274  Identities=16%  Similarity=0.152  Sum_probs=223.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC
Q 037778            7 LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG   86 (575)
Q Consensus         7 t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g   86 (575)
                      ..|+.|+..|+.+.++.+++..+..++.. +.+|.||||.|++.|+.++|++|++.  |++++..+..|.||||.|+..|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~-~~~~~tpL~~A~~~g~~~iv~~Ll~~--Ga~~n~~~~~~~t~L~~A~~~~   79 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINIS-VDETTTPLIDAIRSGDAKIVELFIKH--GADINHINTKIPHPLLTAIKIG   79 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcC
Confidence            36889999999999999999878778776 78899999999999999999999999  9999999999999999999999


Q ss_pred             CHHHHHHHHhcCccc----------------------cccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhh
Q 037778           87 MVELAREIMTHNKAI----------------------ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSH  143 (575)
Q Consensus        87 ~~~iv~~Ll~~~~~~----------------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t  143 (575)
                      +.+++++|+++|++.                      ++.++..|.||||+|+..|+.+++++|++.++ .+..+.+|.|
T Consensus        80 ~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~t  159 (434)
T PHA02874         80 AHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY  159 (434)
T ss_pred             CHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            999999999887653                      24567778888888888888888888888877 6777788888


Q ss_pred             HHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHH
Q 037778          144 LLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWE  223 (575)
Q Consensus       144 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~  223 (575)
                      |||.|+..++.++++.|++.  +..++.+|..|.||||+|+..|+                          .+++++|++
T Consensus       160 pLh~A~~~~~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~g~--------------------------~~iv~~Ll~  211 (434)
T PHA02874        160 PIHIAIKHNFFDIIKLLLEK--GAYANVKDNNGESPLHNAAEYGD--------------------------YACIKLLID  211 (434)
T ss_pred             HHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCC--------------------------HHHHHHHHh
Confidence            88888888888888888876  77777778888888888888773                          678888888


Q ss_pred             HhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcC-ChhHHHHHHhcCcchhhh
Q 037778          224 KVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHR-RKRIFKLIYQIGAAKDLI  302 (575)
Q Consensus       224 ~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~-~~~iv~~Ll~~~~~~~~l  302 (575)
                      .|++++..+    ..|.||||.|+..++ +.++.|+ .+++ ++.+|.+|+||||+|+..+ +.+++++|+++|++++. 
T Consensus       212 ~g~~i~~~~----~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~-  283 (434)
T PHA02874        212 HGNHIMNKC----KNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI-  283 (434)
T ss_pred             CCCCCcCCC----CCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCC-
Confidence            887776554    344588888887765 4555555 4666 6778888888888888765 67888888888887754 


Q ss_pred             hhcccCCCCcHHHHHhhCCC
Q 037778          303 LKFEDPKKNNILHLAAMLPP  322 (575)
Q Consensus       303 ~~~~d~~G~T~LHlAa~~~~  322 (575)
                         +|..|+||||+|++.++
T Consensus       284 ---~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        284 ---KDNKGENPIDTAFKYIN  300 (434)
T ss_pred             ---CCCCCCCHHHHHHHhCC
Confidence               78888888888887763

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.5e-39  Score=335.71  Aligned_cols=337  Identities=10%  Similarity=0.066  Sum_probs=261.1

Q ss_pred             CcccchHHHHHHHcC---CHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcC--CHHHHHHHHHcCCCCCccccccCCC
Q 037778            2 IRRRRLKLYRAALTG---DWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAK--QYGFVKELVQRMEPGDLAQENNVGY   76 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g---~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~~~v~~Ll~~~~~~~l~~~d~~g~   76 (575)
                      ++.|+||||+|+..|   +.++++.||+ +|++++.+ |.+|.||||+|+..|  +.|+|++|++...+++.+..+..++
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~k-D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCR-NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCccc-CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            367999999999997   5999998887 79999998 999999999999977  7999999999954556688888899


Q ss_pred             hHHHHHHH--cCCHHHHHHHHh-cCccccccCC-----CCCCcHHHHHHHcCChHHHHHHHhccc-cc--------cCcC
Q 037778           77 TALFFAAA--SGMVELAREIMT-HNKAIATEQD-----DKRVLPIDLAASLGHEDMVVYLYGQTK-NS--------LNDE  139 (575)
Q Consensus        77 TpLh~Aa~--~g~~~iv~~Ll~-~~~~~~~~~~-----~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~--------~~~~  139 (575)
                      +|||.++.  +++.+++++|++ .+.++ +...     ..|.+|++++...++.|+|++|+++|+ +.        ...+
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~-~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRP-SKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCCh-hhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence            99999998  899999999997 44453 3332     378999999999999999999999999 42        2334


Q ss_pred             chhhHHHHHH------HhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc--CC----CC--c--------------
Q 037778          140 DRSHLLVTLI------QTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK--NL----NY--S--------------  191 (575)
Q Consensus       140 ~g~t~L~~a~------~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~--~~----~~--~--------------  191 (575)
                      ...|.||+.+      ..+..|+++.|+++  |++++.+|.+|.||||++...  ++    .|  +              
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~eiv~lLIs~--GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~  272 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSKDVIKCLIDN--NVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQP  272 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccch
Confidence            4456777544      35678999999998  999999999999999963332  22    00  1              


Q ss_pred             -------------------ccchhhhhhhcc----------------chhh---------------------hHhh----
Q 037778          192 -------------------HFTKQYQRGFFS----------------AKDI---------------------ENKR----  211 (575)
Q Consensus       192 -------------------~~~~~~~~~~~~----------------~~~~---------------------~~~~----  211 (575)
                                         +-....++.+++                ....                     ...|    
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~  352 (672)
T PHA02730        273 YIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLH  352 (672)
T ss_pred             hhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHh
Confidence                               000001010100                0000                     0111    


Q ss_pred             -H--HHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCC----HHHHHHHHHHCCC-ccccccCCCCchHHH---H
Q 037778          212 -Q--KALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGN----LEFLLILIREYPD-LIWNIDENGYTIFHT---A  280 (575)
Q Consensus       212 -~--~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~----~~iv~~Ll~~~~d-~~~~~d~~G~t~Lh~---A  280 (575)
                       .  ...++++.|+++|++++..     ..|.||||.|+..++    .++++.|+++|++ .++.+|.+|+||||.   |
T Consensus       353 ~~~~v~ieIvelLIs~GAdIN~k-----~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a  427 (672)
T PHA02730        353 YGDMVSIPILRCMLDNGATMDKT-----TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILS  427 (672)
T ss_pred             cCCcCcHHHHHHHHHCCCCCCcC-----CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHH
Confidence             1  2478999999999999963     244599999999885    8999999999973 278899999999994   3


Q ss_pred             HHcC---------ChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhc
Q 037778          281 VLHR---------RKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQ  351 (575)
Q Consensus       281 ~~~~---------~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~  351 (575)
                      ...+         ..+++++|+++|++++    .+|..|+||||+|+..++.+.++.|                   +..
T Consensus       428 ~~~n~~~~~~e~~~~~ivk~LIs~GADIN----akD~~G~TPLh~Aa~~~~~eive~L-------------------I~~  484 (672)
T PHA02730        428 RFNNCGYHCYETILIDVFDILSKYMDDID----MIDNENKTLLYYAVDVNNIQFARRL-------------------LEY  484 (672)
T ss_pred             HhccccccccchhHHHHHHHHHhcccchh----ccCCCCCCHHHHHHHhCCHHHHHHH-------------------HHC
Confidence            3332         2356999999999985    4999999999999999987766655                   568


Q ss_pred             ccccccccC-CCCChhHHHHH
Q 037778          352 RRSAEAKNE-DGLSPRALFTR  371 (575)
Q Consensus       352 ~~~~~~~n~-~G~Tpl~~a~~  371 (575)
                      |++++.+|+ .|.||++.|..
T Consensus       485 GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        485 GASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             CCCCCCCCCcCCcCHHHHHHH
Confidence            999999997 59999999975

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8e-39  Score=342.80  Aligned_cols=309  Identities=13%  Similarity=0.069  Sum_probs=248.0

Q ss_pred             HcCCHHHHHHHHhhCC-CcccccCCCCCChHHhHHHHc--CCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCC--H
Q 037778           14 LTGDWAVARGIYDVHE-GEIRAPISKRKDTALHIAAAA--KQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGM--V   88 (575)
Q Consensus        14 ~~g~~~~v~~lL~~~~-~~~~~~~~~~g~TpLh~Aa~~--g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~--~   88 (575)
                      ..++.++++.|++. + .+++.+.|..|.||||.|+..  ++.+++++|++.  |++++.+|.+|.||||+|++.|+  .
T Consensus       151 ~~v~leiVk~LLe~-G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~--GADVN~kD~~G~TPLH~Aa~~g~~~~  227 (764)
T PHA02716        151 RGIDLDLIKYMVDV-GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN--GVNVNLQNNHLITPLHTYLITGNVCA  227 (764)
T ss_pred             cCCCHHHHHHHHHC-CCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCCCH
Confidence            45899999999985 6 888876578899999998754  678999999999  99999999999999999999995  5


Q ss_pred             HHHHHHHhcCccccccCCCCCCcHHHHHH---HcCChHHHHHHHhccccccCcCchhhHHH---HHHHhCcHHHHHHHHH
Q 037778           89 ELAREIMTHNKAIATEQDDKRVLPIDLAA---SLGHEDMVVYLYGQTKNSLNDEDRSHLLV---TLIQTDLYDVALRVFE  162 (575)
Q Consensus        89 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~---~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~---~a~~~~~~~~~~~Ll~  162 (575)
                      ++|+.|+++|+++ +.+|..|.||||.|+   ..++.++++.|++....+.. .+...+++   .|+..|+.++++.|++
T Consensus       228 eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~-~~~~~~L~~~i~AA~~g~leiVklLLe  305 (764)
T PHA02716        228 SVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV-KNIPMILHSYITLARNIDISVVYSFLQ  305 (764)
T ss_pred             HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc-ccchhhhHHHHHHHHcCCHHHHHHHHh
Confidence            9999999999997 999999999999885   56799999999987551111 12223344   4778899999999999


Q ss_pred             hhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChH
Q 037778          163 DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPEL  242 (575)
Q Consensus       163 ~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tp  242 (575)
                      .  +.+++.+|.+|+||||+|+..+.                        ...+++++|++.|++++..+    ..|.||
T Consensus       306 ~--GAdIN~kD~~G~TPLH~Aaa~~~------------------------~~~eIVklLLe~GADIN~kD----~~G~TP  355 (764)
T PHA02716        306 P--GVKLHYKDSAGRTCLHQYILRHN------------------------ISTDIIKLLHEYGNDLNEPD----NIGNTV  355 (764)
T ss_pred             C--CCceeccCCCCCCHHHHHHHHhC------------------------CCchHHHHHHHcCCCCccCC----CCCCCH
Confidence            7  88999999999999999865321                        02689999999999998876    345699


Q ss_pred             HHHHHH--------------cCCHHHHHHHHHHCCCccccccCCCCchHHHH----HHcCChhHHHHHHhcCcchh----
Q 037778          243 IFDAAR--------------QGNLEFLLILIREYPDLIWNIDENGYTIFHTA----VLHRRKRIFKLIYQIGAAKD----  300 (575)
Q Consensus       243 Lh~Aa~--------------~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A----~~~~~~~iv~~Ll~~~~~~~----  300 (575)
                      ||.|+.              .|+.++++.|+++|++ ++.+|..|+||||.+    ...++.+++++|++.++...    
T Consensus       356 LH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~  434 (764)
T PHA02716        356 LHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHR  434 (764)
T ss_pred             HHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhh
Confidence            999875              3789999999999999 899999999999942    23467899999988653110    


Q ss_pred             -----------------------------------------------------hhhhcccCCCCcHHHHHhhCCCCCccc
Q 037778          301 -----------------------------------------------------LILKFEDPKKNNILHLAAMLPPQDRLN  327 (575)
Q Consensus       301 -----------------------------------------------------~l~~~~d~~G~T~LHlAa~~~~~~~~~  327 (575)
                                                                           .-.|.+|..|+||||+|+..++.+.+.
T Consensus       435 ~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~  514 (764)
T PHA02716        435 ILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIV  514 (764)
T ss_pred             hhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchh
Confidence                                                                 001446889999999999988865431


Q ss_pred             cccchhHhhHHHHHHHHHHHH-hhcccccccccCCCCChhHHHHHhh
Q 037778          328 IVSGAALQMQRELLWFEEVEK-AVQRRSAEAKNEDGLSPRALFTRKH  373 (575)
Q Consensus       328 ~l~~~~l~~~~~l~w~~~v~~-~~~~~~~~~~n~~G~Tpl~~a~~~~  373 (575)
                      .               +.++. +..|++++.+|++|+|||++|.++.
T Consensus       515 ~---------------e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        515 M---------------DSFVYLLSIQYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             H---------------HHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Confidence            0               11122 4489999999999999999998754

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.2e-39  Score=343.11  Aligned_cols=280  Identities=13%  Similarity=0.111  Sum_probs=254.6

Q ss_pred             HHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcC---CHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC
Q 037778           10 YRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAK---QYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG   86 (575)
Q Consensus        10 ~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g---~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g   86 (575)
                      ..|+..++.+.++.|++ .+++++.+ +..|.||||+|+..|   +.++++.|++.  |++++.+|..|.||||+|+..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~-~ga~vn~~-~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~--Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLA-AGADVNFR-GEYGKTPLHLYLHYSSEKVKDIVRLLLEA--GADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHH-cCCCcccC-CCCCCCHHHHHHHhcCCChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcC
Confidence            55788899999999998 58999987 999999999999999   99999999999  9999999999999999999999


Q ss_pred             -CHHHHHHHHhcCccccccCCCCCCcHHHHHH--HcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhC--cHHHHHHH
Q 037778           87 -MVELAREIMTHNKAIATEQDDKRVLPIDLAA--SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTD--LYDVALRV  160 (575)
Q Consensus        87 -~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~--~~~~~~~L  160 (575)
                       +.+++++|+++|+++ +.+|..|.||||+|+  ..++.+++++|++.|+ .+..+..|.||||.++..+  ..++++.|
T Consensus        95 ~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         95 TTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence             599999999999997 999999999999999  5678999999999999 8888999999999998865  67999999


Q ss_pred             HHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCC
Q 037778          161 FEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEP  240 (575)
Q Consensus       161 l~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~  240 (575)
                      ++.  +.+++..|..|.||||+++.....                        ..++++.|++.|++++..+    ..|.
T Consensus       174 l~~--g~~~~~~d~~g~t~Lh~~~~~~~~------------------------~~~i~~~Ll~~g~~~~~~d----~~g~  223 (471)
T PHA03095        174 IDA--GADVYAVDDRFRSLLHHHLQSFKP------------------------RARIVRELIRAGCDPAATD----MLGN  223 (471)
T ss_pred             HHc--CCCCcccCCCCCCHHHHHHHHCCC------------------------cHHHHHHHHHcCCCCcccC----CCCC
Confidence            997  888888899999999999875310                        3689999999999998876    4456


Q ss_pred             hHHHHHHHcCCH--HHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHh
Q 037778          241 ELIFDAARQGNL--EFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA  318 (575)
Q Consensus       241 tpLh~Aa~~g~~--~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa  318 (575)
                      ||||.|+..|+.  .+++.|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++|++++.    +|.+|+||||+|+
T Consensus       224 tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~----~~~~g~tpl~~A~  298 (471)
T PHA03095        224 TPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALGADINA----VSSDGNTPLSLMV  298 (471)
T ss_pred             CHHHHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc----cCCCCCCHHHHHH
Confidence            999999999975  688999999999 899999999999999999999999999999999865    8999999999999


Q ss_pred             hCCCCCccccc
Q 037778          319 MLPPQDRLNIV  329 (575)
Q Consensus       319 ~~~~~~~~~~l  329 (575)
                      ..++.+++..+
T Consensus       299 ~~~~~~~v~~L  309 (471)
T PHA03095        299 RNNNGRAVRAA  309 (471)
T ss_pred             HhCCHHHHHHH
Confidence            99998877665

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.5e-38  Score=347.92  Aligned_cols=280  Identities=14%  Similarity=0.083  Sum_probs=232.0

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcC------------------
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRM------------------   63 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~------------------   63 (575)
                      +..|+||||.||..|+.++|+.|++ .|++++.. +.+|.||||+|+..|+.++++.|++..                  
T Consensus       175 d~~G~TpLh~Aa~~G~~~iv~~LL~-~Gad~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~  252 (682)
T PHA02876        175 DIYCITPIHYAAERGNAKMVNLLLS-YGADVNII-ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNED  252 (682)
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCcc-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCC
Confidence            4568888888888888888888877 47777776 778888888888888888877766542                  


Q ss_pred             ---------CCCCccccccCCChHHHHHHHcCCH-HHHHHHHhcCccccccCCCCCCcHHHHHHHcC-ChHHHHHHHhcc
Q 037778           64 ---------EPGDLAQENNVGYTALFFAAASGMV-ELAREIMTHNKAIATEQDDKRVLPIDLAASLG-HEDMVVYLYGQT  132 (575)
Q Consensus        64 ---------~~~~l~~~d~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~~~  132 (575)
                               .|.+++.+|..|+||||+|+..|+. ++++.|++.|+++ +.+|..|.||||+|+..| +.++++.|++.+
T Consensus       253 ~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g  331 (682)
T PHA02876        253 LETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIMLG  331 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence                     1345667777888888888888876 5888888888886 788888888888888888 588888888888


Q ss_pred             c-cccCcCchhhHHHHHHHh-CcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHh
Q 037778          133 K-NSLNDEDRSHLLVTLIQT-DLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENK  210 (575)
Q Consensus       133 ~-~~~~~~~g~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (575)
                      + .+..+..|.||||.|+.. +..++++.|++.  +.+++.+|..|.||||+|+..++                      
T Consensus       332 adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~--gadin~~d~~G~TpLh~Aa~~~~----------------------  387 (682)
T PHA02876        332 ADVNAADRLYITPLHQASTLDRNKDIVITLLEL--GANVNARDYCDKTPIHYAAVRNN----------------------  387 (682)
T ss_pred             CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc--CCCCccCCCCCCCHHHHHHHcCC----------------------
Confidence            8 777888888888888874 456777777765  88888888888888888888883                      


Q ss_pred             hHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCC-HHHHHHHHHHCCCccccccCCCCchHHHHHHcC-ChhH
Q 037778          211 RQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGN-LEFLLILIREYPDLIWNIDENGYTIFHTAVLHR-RKRI  288 (575)
Q Consensus       211 ~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~-~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~-~~~i  288 (575)
                          .++++.|++.|++++..+    ..+.||||+|+..++ .++++.|+++|++ ++.+|..|+||||+|+..+ +.++
T Consensus       388 ----~~iv~~Ll~~gad~~~~~----~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa~~~~~~~i  458 (682)
T PHA02876        388 ----VVIINTLLDYGADIEALS----QKIGTALHFALCGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACKKNCKLDV  458 (682)
T ss_pred             ----HHHHHHHHHCCCCccccC----CCCCchHHHHHHcCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHHHhCCcHHH
Confidence                899999999999998766    344599999998766 5679999999999 8999999999999999976 6899


Q ss_pred             HHHHHhcCcchhhhhhcccCCCCcHHHHHhhCC
Q 037778          289 FKLIYQIGAAKDLILKFEDPKKNNILHLAAMLP  321 (575)
Q Consensus       289 v~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~  321 (575)
                      +++|+++|++++.    +|..|+||||+|+.++
T Consensus       459 v~lLl~~Gad~n~----~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        459 IEMLLDNGADVNA----INIQNQYPLLIALEYH  487 (682)
T ss_pred             HHHHHHCCCCCCC----CCCCCCCHHHHHHHhC
Confidence            9999999999865    9999999999999865

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=9.4e-38  Score=334.58  Aligned_cols=284  Identities=12%  Similarity=0.045  Sum_probs=229.4

Q ss_pred             CcccchHHHHHHH--cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCC--HHHHHHHHHcCCCCCccccccCCCh
Q 037778            2 IRRRRLKLYRAAL--TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQ--YGFVKELVQRMEPGDLAQENNVGYT   77 (575)
Q Consensus         2 ~~~~~t~L~~Aa~--~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~--~~~v~~Ll~~~~~~~l~~~d~~g~T   77 (575)
                      +..|.||||.|+.  .|+.++++.|++ +|++++.+ |.+|.||||+|++.|+  .++|+.|+++  |++++.+|..|+|
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe-~GADVN~k-D~~G~TPLH~Aa~~g~~~~eIVklLLe~--GADVN~kD~~G~T  249 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCN-NGVNVNLQ-NNHLITPLHTYLITGNVCASVIKKIIEL--GGDMDMKCVNGMS  249 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCCCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            4579999999865  468899998887 68999998 9999999999999996  4999999999  9999999999999


Q ss_pred             HHHHH-------------------------------------HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH--
Q 037778           78 ALFFA-------------------------------------AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS--  118 (575)
Q Consensus        78 pLh~A-------------------------------------a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--  118 (575)
                      |||+|                                     ++.|+.++++.|++.|+++ +.+|..|.||||+|+.  
T Consensus       250 PLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        250 PIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHh
Confidence            99975                                     4557889999999999996 8999999999999864  


Q ss_pred             cCChHHHHHHHhccc-cccCcCchhhHHHHHHH--------------hCcHHHHHHHHHhhhccccccccCCCCcHHHHH
Q 037778          119 LGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQ--------------TDLYDVALRVFEDLHEKSAIGRAANEETALHAL  183 (575)
Q Consensus       119 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a  183 (575)
                      .++.+++++|++.|+ .+..|..|.||||.|+.              .++.++++.|+++  +++++.+|..|.||||.+
T Consensus       329 ~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~--GADIn~kn~~G~TPLh~y  406 (764)
T PHA02716        329 NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL--GADITAVNCLGYTPLTSY  406 (764)
T ss_pred             CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC--CCCCCCcCCCCCChHHHH
Confidence            468999999999999 88899999999999865              3678999999997  999999999999999943


Q ss_pred             H---h-cCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh-----h-hcccCCChHHHHHHHcCCHH
Q 037778          184 A---R-KNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR-----I-SNLIAEPELIFDAARQGNLE  253 (575)
Q Consensus       184 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~-----~-~~~~~~~tpLh~Aa~~g~~~  253 (575)
                      +   . .+                          ..+++++|++.++......     . ........++|.++..++.+
T Consensus       407 ~~~a~n~~--------------------------~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~  460 (764)
T PHA02716        407 ICTAQNYM--------------------------YYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIP  460 (764)
T ss_pred             HHHHHhcC--------------------------hHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcc
Confidence            2   1 22                          3788999988765432211     0 00111124466666555443


Q ss_pred             H------------------HHHHHHHCCCccccccCCCCchHHHHHHcCChh-----HHHHHHhcCcchhhhhhcccCCC
Q 037778          254 F------------------LLILIREYPDLIWNIDENGYTIFHTAVLHRRKR-----IFKLIYQIGAAKDLILKFEDPKK  310 (575)
Q Consensus       254 i------------------v~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~-----iv~~Ll~~~~~~~~l~~~~d~~G  310 (575)
                      .                  +..++..+.+ ++..|..|+||||+|+.+|+.+     ++++|++.|++++.    +|++|
T Consensus       461 ~~~~~~~~~~~~~~~~~~v~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~----~d~~G  535 (764)
T PHA02716        461 TDLYTDEYEPYDSTKIHDVYHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINI----PTKNG  535 (764)
T ss_pred             hhhhhhhhhhccccccchhhHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcc----cCCCC
Confidence            2                  2333334445 6778999999999999998874     55999999999865    99999


Q ss_pred             CcHHHHHhhCCCC
Q 037778          311 NNILHLAAMLPPQ  323 (575)
Q Consensus       311 ~T~LHlAa~~~~~  323 (575)
                      +||||+|++.|+.
T Consensus       536 ~TPLh~A~~~g~~  548 (764)
T PHA02716        536 VTPLMLTMRNNRL  548 (764)
T ss_pred             CCHHHHHHHcCCc
Confidence            9999999999986

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.8e-39  Score=328.12  Aligned_cols=313  Identities=16%  Similarity=0.098  Sum_probs=264.1

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      ...|.|++|.|+.++..      +++ -...... |..|+||||+|+.....+.++.|++.  |++++..|.++.+|+|+
T Consensus        58 ~~~gd~~~~~~~~~~y~------~~~-~~~~~a~-D~~~n~~l~~a~~~~~~~~i~~Lls~--gad~~~~n~~~~aplh~  127 (929)
T KOG0510|consen   58 RAFGDTELHHASARNYI------LSK-LAISYAK-DSADNTPLHAAVEYNQGDKIQVLLSY--GADTPLRNLNKNAPLHL  127 (929)
T ss_pred             hhhchhHHHHHHhhcch------hhh-hhhhhhh-hcccCchhHHHhhcchHHHHHHHHhc--CCCCChhhhhccCchhh
Confidence            34688999999998865      232 1223333 88899999999999999999999999  99999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      |+..|+.+..+.|+++++++ +..|..|.||||+||..++.|..+.|++.++ +...+.+|..|+|.|++++..+..+.+
T Consensus       128 A~~~~~~s~L~~Ll~~~~dv-nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~  206 (929)
T KOG0510|consen  128 AADSGNYSCLKLLLDYGADV-NLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIF  206 (929)
T ss_pred             ccccchHHHHHHHHHhcCCc-cccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhh
Confidence            99999999999999999996 9999999999999999999998899999999 788899999999999999999999999


Q ss_pred             HHhh---hccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh-----
Q 037778          161 FEDL---HEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR-----  232 (575)
Q Consensus       161 l~~~---~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~-----  232 (575)
                      +.+.   ....++.-+.+|.||||.|++.|+                          .|.++..++.+.......     
T Consensus       207 l~~~g~~r~~~in~~~n~~~~pLhlAve~g~--------------------------~e~lk~~L~n~~~~a~~~~~~~~  260 (929)
T KOG0510|consen  207 LPEHGYERQTHINFDNNEKATPLHLAVEGGD--------------------------IEMLKMCLQNGKKIADVQLDAMQ  260 (929)
T ss_pred             hccccchhhcccccccCCCCcchhhhhhcCC--------------------------HHHHHHHHhCccccchhhhHHHH
Confidence            9830   256777889999999999999995                          566666666554333221     


Q ss_pred             -----hh-cccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcc
Q 037778          233 -----IS-NLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFE  306 (575)
Q Consensus       233 -----~~-~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~  306 (575)
                           +. ..+.|.||||+|++.|+.+.++.|+..|++ ++.++.++.||||.|+.+|+.+.++.|++ ..+.. +.|..
T Consensus       261 q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~r-llne~  337 (929)
T KOG0510|consen  261 QEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTR-LLNES  337 (929)
T ss_pred             HHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHh-CcCcc-ccccc
Confidence                 00 112345999999999999999999999999 89999999999999999999999999999 44443 34889


Q ss_pred             cCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccc---cccCCCCChhHHHHHhh
Q 037778          307 DPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAE---AKNEDGLSPRALFTRKH  373 (575)
Q Consensus       307 d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~---~~n~~G~Tpl~~a~~~~  373 (575)
                      |..|+||||+|++.|+.++++.|                   +-.|+...   ..|.+|.||||+|+.+.
T Consensus       338 D~~g~tpLHlaa~~gH~~v~qlL-------------------l~~GA~~~~~~e~D~dg~TaLH~Aa~~g  388 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGHDRVVQLL-------------------LNKGALFLNMSEADSDGNTALHLAAKYG  388 (929)
T ss_pred             cccCCCchhhhhhcCHHHHHHHH-------------------HhcChhhhcccccccCCchhhhHHHHhc
Confidence            99999999999999998877766                   23444433   44999999999997654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-38  Score=335.66  Aligned_cols=273  Identities=16%  Similarity=0.196  Sum_probs=242.5

Q ss_pred             CCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH-----HHHcCCHHH
Q 037778           16 GDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF-----AAASGMVEL   90 (575)
Q Consensus        16 g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~-----Aa~~g~~~i   90 (575)
                      ...+.++.++++ +...+.. +..+.||||.|++.|+.++|+.|++.  |++++..+..|.||||+     |+..|+.++
T Consensus        13 ~~~~~~~~~~~~-~~~~~~~-~~~~~t~L~~A~~~~~~~ivk~Ll~~--g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~i   88 (480)
T PHA03100         13 IKVKNIKYIIME-DDLNDYS-YKKPVLPLYLAKEARNIDVVKILLDN--GADINSSTKNNSTPLHYLSNIKYNLTDVKEI   88 (480)
T ss_pred             HHHHHHHHHHhc-Cccchhh-hcccchhhhhhhccCCHHHHHHHHHc--CCCCCCccccCcCHHHHHHHHHHHhhchHHH
Confidence            345677777764 4444443 78899999999999999999999999  89999999999999999     999999999


Q ss_pred             HHHHHhcCccccccCCCCCCcHHHHHH--HcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhC--cHHHHHHHHHhhh
Q 037778           91 AREIMTHNKAIATEQDDKRVLPIDLAA--SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTD--LYDVALRVFEDLH  165 (575)
Q Consensus        91 v~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~  165 (575)
                      ++.|++.|+++ +..|..|.||||+|+  ..|+.+++++|++.++ .+..+..|.||||.|+..+  +.++++.|+++  
T Consensus        89 v~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~--  165 (480)
T PHA03100         89 VKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK--  165 (480)
T ss_pred             HHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC--
Confidence            99999999997 889999999999999  9999999999999998 7788899999999999999  99999999997  


Q ss_pred             ccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCC-----C
Q 037778          166 EKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAE-----P  240 (575)
Q Consensus       166 ~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~-----~  240 (575)
                      +.+++.+|.+|.||||+|+..++                          .+++++|++.|++++..+   ..+.     .
T Consensus       166 g~din~~d~~g~tpL~~A~~~~~--------------------------~~iv~~Ll~~ga~~~~~~---~~~~~~~~~~  216 (480)
T PHA03100        166 GVDINAKNRYGYTPLHIAVEKGN--------------------------IDVIKFLLDNGADINAGD---IETLLFTIFE  216 (480)
T ss_pred             CCCcccccCCCCCHHHHHHHhCC--------------------------HHHHHHHHHcCCCccCCC---CCCCcHHHHH
Confidence            88888999999999999999984                          889999999999888765   2221     5


Q ss_pred             hHHHHHHHcCC--HHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHh
Q 037778          241 ELIFDAARQGN--LEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA  318 (575)
Q Consensus       241 tpLh~Aa~~g~--~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa  318 (575)
                      ||+|.|+..|+  .++++.|+++|++ ++.+|..|+||||+|+.+++.+++++|+++|++++.    +|..|+||||+|+
T Consensus       217 t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~----~d~~g~tpl~~A~  291 (480)
T PHA03100        217 TPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL----VNKYGDTPLHIAI  291 (480)
T ss_pred             hHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc----cCCCCCcHHHHHH
Confidence            99999999999  9999999999999 889999999999999999999999999999998765    8999999999999


Q ss_pred             hCCCCCccccc
Q 037778          319 MLPPQDRLNIV  329 (575)
Q Consensus       319 ~~~~~~~~~~l  329 (575)
                      ..++.++++.|
T Consensus       292 ~~~~~~iv~~L  302 (480)
T PHA03100        292 LNNNKEIFKLL  302 (480)
T ss_pred             HhCCHHHHHHH
Confidence            99988877666

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5e-37  Score=322.57  Aligned_cols=279  Identities=17%  Similarity=0.178  Sum_probs=242.8

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcC------------------
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRM------------------   63 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~------------------   63 (575)
                      +.+|.||||.|+..|+.++++.|++ .|++++.. +..|.||||.|+..|+.+++++|++..                  
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~-~Ga~~n~~-~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~  109 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIK-HGADINHI-NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT  109 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence            3578899999999999999999987 58899887 889999999999999999999999862                  


Q ss_pred             ---CCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcC
Q 037778           64 ---EPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDE  139 (575)
Q Consensus        64 ---~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~  139 (575)
                         .|.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.
T Consensus       110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~  188 (434)
T PHA02874        110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN  188 (434)
T ss_pred             HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence               13457788999999999999999999999999999997 8899999999999999999999999999999 788899


Q ss_pred             chhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHH
Q 037778          140 DRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQ  219 (575)
Q Consensus       140 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~  219 (575)
                      .|.||||.|+..|+.+++++|++.  +.+++.++.+|.||||.|+..+                           .+.++
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~--g~~i~~~~~~g~TpL~~A~~~~---------------------------~~~i~  239 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDH--GNHIMNKCKNGFTPLHNAIIHN---------------------------RSAIE  239 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHCC---------------------------hHHHH
Confidence            999999999999999999999997  8888899999999999999877                           34555


Q ss_pred             HHHHHhhhCChhhhhcccCCChHHHHHHHcC-CHHHHHHHHHHCCCccccccCCCCchHHHHHHcC-ChhHHHHHHhcCc
Q 037778          220 RLWEKVVLLSDSRISNLIAEPELIFDAARQG-NLEFLLILIREYPDLIWNIDENGYTIFHTAVLHR-RKRIFKLIYQIGA  297 (575)
Q Consensus       220 ~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g-~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~-~~~iv~~Ll~~~~  297 (575)
                      .|+ .+.+++..+    ..|.||||+|+..+ +.++++.|+++|++ ++.+|..|+||||+|++++ +.++++.|++.+.
T Consensus       240 ~Ll-~~~~in~~d----~~G~TpLh~A~~~~~~~~iv~~Ll~~gad-~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~  313 (434)
T PHA02874        240 LLI-NNASINDQD----IDGSTPLHHAINPPCDIDIIDILLYHKAD-ISIKDNKGENPIDTAFKYINKDPVIKDIIANAV  313 (434)
T ss_pred             HHH-cCCCCCCcC----CCCCCHHHHHHhcCCcHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcC
Confidence            555 577777655    34569999999976 89999999999999 8999999999999999987 7789999999887


Q ss_pred             chhhhhhcccCCC-CcHHHHHhhCCC
Q 037778          298 AKDLILKFEDPKK-NNILHLAAMLPP  322 (575)
Q Consensus       298 ~~~~l~~~~d~~G-~T~LHlAa~~~~  322 (575)
                      ..+.    .+..+ .+++..+....+
T Consensus       314 ~~~~----~~~~~~~~~~~~~~i~~~  335 (434)
T PHA02874        314 LIKE----ADKLKDSDFLEHIEIKDN  335 (434)
T ss_pred             chhh----ccccchhHHHHHHHHhcc
Confidence            6543    33333 556666554444

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-37  Score=331.12  Aligned_cols=264  Identities=20%  Similarity=0.216  Sum_probs=246.6

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhH-----HHHcCCHHHHHHHHHcCCCCCccccccCCCh
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHI-----AAAAKQYGFVKELVQRMEPGDLAQENNVGYT   77 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~-----Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~T   77 (575)
                      +.+.||||.|+..|+.++++.|++ .|.+++.. +..|.||||+     |+..|+.++++.|++.  |++++..|..|.|
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~-~g~~~~~~-~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~--ga~i~~~d~~g~t  108 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLD-NGADINSS-TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY--GANVNAPDNNGIT  108 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHH-cCCCCCCc-cccCcCHHHHHHHHHHHhhchHHHHHHHHHC--CCCCCCCCCCCCc
Confidence            568899999999999999999998 58888887 8889999999     9999999999999999  8999999999999


Q ss_pred             HHHHHH--HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcC--ChHHHHHHHhccc-cccCcCchhhHHHHHHHhC
Q 037778           78 ALFFAA--ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLG--HEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTD  152 (575)
Q Consensus        78 pLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~  152 (575)
                      |||+|+  ..|+.++++.|++.|+++ +..+..|.||||+|+..|  +.+++++|++.|+ .+..+..|.||||.|+..+
T Consensus       109 pL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~  187 (480)
T PHA03100        109 PLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG  187 (480)
T ss_pred             hhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC
Confidence            999999  999999999999999997 889999999999999999  9999999999999 7778889999999999999


Q ss_pred             cHHHHHHHHHhhhccccccccCCC------CcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhh
Q 037778          153 LYDVALRVFEDLHEKSAIGRAANE------ETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVV  226 (575)
Q Consensus       153 ~~~~~~~Ll~~~~~~~~~~~d~~g------~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~  226 (575)
                      +.++++.|++.  +.+++..+..|      .||||.|+..++                        ...+++++|++.|+
T Consensus       188 ~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~t~l~~a~~~~~------------------------~~~~iv~~Ll~~g~  241 (480)
T PHA03100        188 NIDVIKFLLDN--GADINAGDIETLLFTIFETPLHIAACYNE------------------------ITLEVVNYLLSYGV  241 (480)
T ss_pred             CHHHHHHHHHc--CCCccCCCCCCCcHHHHHhHHHHHHHhCc------------------------CcHHHHHHHHHcCC
Confidence            99999999998  88899999989      899999999882                        02789999999999


Q ss_pred             hCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhh
Q 037778          227 LLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLI  302 (575)
Q Consensus       227 ~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l  302 (575)
                      +++..+    ..|.||||.|+..|+.++++.|++.|+| ++.+|..|+||+|+|+++++.+++++|+++|++.+.+
T Consensus       242 din~~d----~~g~TpL~~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i  312 (480)
T PHA03100        242 PINIKD----VYGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI  312 (480)
T ss_pred             CCCCCC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHH
Confidence            998776    3455999999999999999999999998 8999999999999999999999999999999988764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=324.41  Aligned_cols=264  Identities=15%  Similarity=0.103  Sum_probs=240.5

Q ss_pred             CcccchHHHHHHHcC---CHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcC-CHHHHHHHHHcCCCCCccccccCCCh
Q 037778            2 IRRRRLKLYRAALTG---DWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAK-QYGFVKELVQRMEPGDLAQENNVGYT   77 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g---~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g-~~~~v~~Ll~~~~~~~l~~~d~~g~T   77 (575)
                      +..|.||||.|+..|   +.++++.|++ .|++++.+ +..|.||||+|+..| +.+++++|+++  |++++.+|..|+|
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~-~Gadin~~-~~~g~TpLh~A~~~~~~~~iv~lLl~~--ga~in~~~~~g~t  119 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLLE-AGADVNAP-ERCGFTPLHLYLYNATTLDVIKLLIKA--GADVNAKDKVGRT  119 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCCcHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            457899999999999   9999998887 68999998 889999999999999 59999999999  9999999999999


Q ss_pred             HHHHHH--HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcC--ChHHHHHHHhccc-cccCcCchhhHHHHHHHh-
Q 037778           78 ALFFAA--ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLG--HEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQT-  151 (575)
Q Consensus        78 pLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~-  151 (575)
                      |||+|+  ..++.++++.|++.|+++ +..|..|.||||+|+..+  +.+++++|++.++ ....+..|.||||.++.. 
T Consensus       120 pLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        120 PLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF  198 (471)
T ss_pred             HHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHC
Confidence            999999  566899999999999996 899999999999998876  6899999999999 556699999999999874 


Q ss_pred             -CcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCCh
Q 037778          152 -DLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSD  230 (575)
Q Consensus       152 -~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~  230 (575)
                       +..++++.|++.  +.+++.+|..|.||||+|+..++.                        ...+++.+++.|++++.
T Consensus       199 ~~~~~i~~~Ll~~--g~~~~~~d~~g~tpLh~Aa~~~~~------------------------~~~~v~~ll~~g~din~  252 (471)
T PHA03095        199 KPRARIVRELIRA--GCDPAATDMLGNTPLHSMATGSSC------------------------KRSLVLPLLIAGISINA  252 (471)
T ss_pred             CCcHHHHHHHHHc--CCCCcccCCCCCCHHHHHHhcCCc------------------------hHHHHHHHHHcCCCCCC
Confidence             678999999997  999999999999999999998730                        13578889999999988


Q ss_pred             hhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhh
Q 037778          231 SRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDL  301 (575)
Q Consensus       231 ~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  301 (575)
                      .+    ..|.||||+|+..|+.++++.|++.|+| ++.+|.+|+||||+|+.+|+.++++.|++.+++.+.
T Consensus       253 ~d----~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~  318 (471)
T PHA03095        253 RN----RYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAET  318 (471)
T ss_pred             cC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHH
Confidence            76    4456999999999999999999999999 899999999999999999999999999999998865

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-36  Score=323.99  Aligned_cols=299  Identities=15%  Similarity=0.121  Sum_probs=224.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhC---CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            8 KLYRAALTGDWAVARGIYDVH---EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~---~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      .|+.+....+.+.+.+.++..   +...+.. +..+.||||.|++.|+.++|++|+++  |++++.+|.+|.||||+||.
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~tPLh~A~~~g~~e~vk~Ll~~--gadvn~~d~~g~TpLh~A~~   79 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSA-SLIPFIPLHQAVEARNLDVVKSLLTR--GHNVNQPDHRDLTPLHIICK   79 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcc-cccCcchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHH
Confidence            356677777765566666541   1111222 45678899999999999999999988  88999999999999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHh--CcHHHHHHHHH
Q 037778           85 SGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQT--DLYDVALRVFE  162 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~--~~~~~~~~Ll~  162 (575)
                      .|+.++++.|++.+... ..  ..+.+|++.|+..++.++++.|+..+.....+.+. ..+......  ...++++.|++
T Consensus        80 ~g~~~~v~~Ll~~~~~~-~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~iv~~Ll~  155 (477)
T PHA02878         80 EPNKLGMKEMIRSINKC-SV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDL-VYIDKKSKDDIIEAEITKLLLS  155 (477)
T ss_pred             CccHhHHHHHHHHHhcc-cc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcH-HHHhhccchhhHHHHHHHHHHH
Confidence            99999999999886653 22  56788999999999999999998875411111111 111111111  22458888888


Q ss_pred             hhhccccccccCC-CCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778          163 DLHEKSAIGRAAN-EETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE  241 (575)
Q Consensus       163 ~~~~~~~~~~d~~-g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t  241 (575)
                      .  +.+++.++.+ |.||||+|+..|+                          .+++++|++.|++++..+    ..|.|
T Consensus       156 ~--gadin~~~~~~g~tpLh~A~~~~~--------------------------~~iv~~Ll~~gad~n~~d----~~g~t  203 (477)
T PHA02878        156 Y--GADINMKDRHKGNTALHYATENKD--------------------------QRLTELLLSYGANVNIPD----KTNNS  203 (477)
T ss_pred             c--CCCCCccCCCCCCCHHHHHHhCCC--------------------------HHHHHHHHHCCCCCCCcC----CCCCC
Confidence            7  8888888888 9999999998884                          788999999998887765    34559


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHc-CChhHHHHHHhcCcchhhhhhcccC-CCCcHHHHHhh
Q 037778          242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLH-RRKRIFKLIYQIGAAKDLILKFEDP-KKNNILHLAAM  319 (575)
Q Consensus       242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~-~~~~iv~~Ll~~~~~~~~l~~~~d~-~G~T~LHlAa~  319 (575)
                      |||.|+..|+.++++.|++.|++ ++.+|..|+||||+|+.. ++.+++++|+++|++++.    ++. .|+||||+|+ 
T Consensus       204 pLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~----~~~~~g~TpLh~A~-  277 (477)
T PHA02878        204 PLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA----KSYILGLTALHSSI-  277 (477)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc----cCCCCCCCHHHHHc-
Confidence            99999999999999999999988 788899999999999875 688999999999988764    554 7999999983 


Q ss_pred             CCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHHH
Q 037778          320 LPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTR  371 (575)
Q Consensus       320 ~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~  371 (575)
                       ++.+.++.|                   +..|++++.+|.+|+||+++|.+
T Consensus       278 -~~~~~v~~L-------------------l~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        278 -KSERKLKLL-------------------LEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             -cCHHHHHHH-------------------HHCCCCCCCcCCCCCCHHHHHHH
Confidence             333333332                   34788899999999999998875

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-36  Score=325.31  Aligned_cols=325  Identities=12%  Similarity=0.032  Sum_probs=222.0

Q ss_pred             CcccchHHHHHHHc---CCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHH----HHHHHHHcCCCCCccccccC
Q 037778            2 IRRRRLKLYRAALT---GDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYG----FVKELVQRMEPGDLAQENNV   74 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~---g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~----~v~~Ll~~~~~~~l~~~d~~   74 (575)
                      +..|+||||+|+..   |+.++++.||+ .+++++.. +..|.||||+|+..|+.+    +++.|++.  +...+..+  
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~-~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~--~~~~n~~~--  102 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHK-NWRQLTPLEEYTNSRHVKVNKDIAMALLEA--TGYSNIND--  102 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCcccc-CCCCCCHHHHHHHcCChhHHHHHHHHHHhc--cCCCCCCC--
Confidence            45789999997555   88999999988 68999987 999999999999999854    45667765  22233322  


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH--HHcCChHHHHHHHhccc-cccCc---Cch-------
Q 037778           75 GYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA--ASLGHEDMVVYLYGQTK-NSLND---EDR-------  141 (575)
Q Consensus        75 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~-~~~~~---~~g-------  141 (575)
                      ..+++|.|+.+|+.++|++|+++|+++ +..|.+|.||||.|  +..|+.+++++|+++|+ .+..|   ..|       
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~  181 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ  181 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence            236677788888888888888888886 88888888888854  34678888888888888 43322   223       


Q ss_pred             ----hhHHHHHHH-----------hCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccch-
Q 037778          142 ----SHLLVTLIQ-----------TDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAK-  205 (575)
Q Consensus       142 ----~t~L~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~-  205 (575)
                          .||||+|+.           .++.++++.|++.  +++++.+|.+|.||||+|+..++.-    ...++.+.+.. 
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~--Gadvn~~d~~G~TpLh~A~~~g~~~----~eivk~Li~g~d  255 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH--GIKPSSIDKNYCTALQYYIKSSHID----IDIVKLLMKGID  255 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHHHHHHHC--CCCcccCCCCCCcHHHHHHHcCCCc----HHHHHHHHhCCc
Confidence                588888875           3577888888887  8888888888888888888877520    01111111100 


Q ss_pred             -------------hhhHhhH-----------HHHHHH-------------------------------------------
Q 037778          206 -------------DIENKRQ-----------KALKLV-------------------------------------------  218 (575)
Q Consensus       206 -------------~~~~~~~-----------~~~e~v-------------------------------------------  218 (575)
                                   .....|.           -..+++                                           
T Consensus       256 ~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  335 (661)
T PHA02917        256 NTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHIL  335 (661)
T ss_pred             ccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHH
Confidence                         0000000           012444                                           


Q ss_pred             --------------HHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHH-HCCCccccccCCCCchHHHHHHc
Q 037778          219 --------------QRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIR-EYPDLIWNIDENGYTIFHTAVLH  283 (575)
Q Consensus       219 --------------~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~-~~~d~~~~~d~~G~t~Lh~A~~~  283 (575)
                                    +.|++.|++++.++    ..|+++.    ...+.++++.|+. .|++ +...|.+|+||||.|++.
T Consensus       336 ~~~~~~g~~~~~~v~~Ll~~GAdvn~~~----~~g~~~~----~~~~~~~i~~LL~~~ga~-~~~~~~~G~TpL~~a~~~  406 (661)
T PHA02917        336 IEYMTFGDIDIPLVECMLEYGAVVNKEA----IHGYFRN----INIDSYTMKYLLKKEGGD-AVNHLDDGEIPIGHLCKS  406 (661)
T ss_pred             HHHHHcCCCcHHHHHHHHHcCCCCCCCC----ccccchh----hcCCHHHHHHHHHhcCCC-ccccCCCCCChhHHHHHh
Confidence                          44444444444332    1222211    2334445555554 2444 333455699999998754


Q ss_pred             CC-----------------------hhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHH
Q 037778          284 RR-----------------------KRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQREL  340 (575)
Q Consensus       284 ~~-----------------------~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l  340 (575)
                      ++                       .+++++|+++|++++    .+|..|+||||+|+..++.+.++.|           
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN----~kd~~G~TpLh~Aa~~~~~~~v~~L-----------  471 (661)
T PHA02917        407 NYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDIN----MIDKRGETLLHKAVRYNKQSLVSLL-----------  471 (661)
T ss_pred             cccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCC----CCCCCCcCHHHHHHHcCCHHHHHHH-----------
Confidence            32                       457799999999885    4899999999999988876655444           


Q ss_pred             HHHHHHHHhhcccccccccCCCCChhHHHHH
Q 037778          341 LWFEEVEKAVQRRSAEAKNEDGLSPRALFTR  371 (575)
Q Consensus       341 ~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~  371 (575)
                              +..|++++.+|..|+||+++|..
T Consensus       472 --------l~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        472 --------LESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             --------HHCcCCCCCCCCCCCCHHHHHHH
Confidence                    45899999999999999999985

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-36  Score=320.60  Aligned_cols=271  Identities=15%  Similarity=0.107  Sum_probs=230.0

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      ..+.||||.||..|+.++|+.|++ .+++++.+ |.+|.||||+|+..|+.+.++.|++.  +.+.+.  ..+.+|+|.|
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~-~gadvn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~--~~~~~~--~~~~~~l~~a  108 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLT-RGHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIRS--INKCSV--FYTLVAIKDA  108 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHCccHhHHHHHHHH--Hhcccc--ccchhhHHHH
Confidence            357899999999999999999998 58899987 99999999999999999999999998  443333  5678999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc--CChHHHHHHHhccc-cccCcCc-hhhHHHHHHHhCcHHHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL--GHEDMVVYLYGQTK-NSLNDED-RSHLLVTLIQTDLYDVAL  158 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~~~-~~~~~~~-g~t~L~~a~~~~~~~~~~  158 (575)
                      +..|+.++++.|+..+.+.....+   ...+......  .+.+++++|++.|+ .+..+.+ |.||||.|+..++.++++
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~  185 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTE  185 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHH
Confidence            999999999999987544211111   1111111112  23569999999999 7777877 999999999999999999


Q ss_pred             HHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccC
Q 037778          159 RVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIA  238 (575)
Q Consensus       159 ~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~  238 (575)
                      .|++.  +++++.+|.+|.||||.|+..++                          .++++.|++.|++++..+    ..
T Consensus       186 ~Ll~~--gad~n~~d~~g~tpLh~A~~~~~--------------------------~~iv~~Ll~~ga~in~~d----~~  233 (477)
T PHA02878        186 LLLSY--GANVNIPDKTNNSPLHHAVKHYN--------------------------KPIVHILLENGASTDARD----KC  233 (477)
T ss_pred             HHHHC--CCCCCCcCCCCCCHHHHHHHhCC--------------------------HHHHHHHHHcCCCCCCCC----CC
Confidence            99997  89999999999999999999984                          899999999999999876    34


Q ss_pred             CChHHHHHHHc-CCHHHHHHHHHHCCCccccccC-CCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHH
Q 037778          239 EPELIFDAARQ-GNLEFLLILIREYPDLIWNIDE-NGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHL  316 (575)
Q Consensus       239 ~~tpLh~Aa~~-g~~~iv~~Ll~~~~d~~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHl  316 (575)
                      |.||||+|+.. ++.++++.|+++|++ ++.++. .|+||||+|  .++.+++++|+++|++++.    +|.+|+||||+
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~----~d~~g~TpL~~  306 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS----LNSYKLTPLSS  306 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC----cCCCCCCHHHH
Confidence            56999999975 799999999999999 777775 899999999  5778999999999999865    89999999999


Q ss_pred             HhhCC
Q 037778          317 AAMLP  321 (575)
Q Consensus       317 Aa~~~  321 (575)
                      |+..+
T Consensus       307 A~~~~  311 (477)
T PHA02878        307 AVKQY  311 (477)
T ss_pred             HHHHc
Confidence            99854

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-35  Score=312.75  Aligned_cols=282  Identities=15%  Similarity=0.154  Sum_probs=238.8

Q ss_pred             hHHHHHHH---cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHc--CCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            7 LKLYRAAL---TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAA--KQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         7 t~L~~Aa~---~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~--g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      ++||.-+.   ..+.+.++.|++ .|.+++..  .+|.||||.++..  ++.++|++|+++  |+++|.++ .+.||||.
T Consensus         2 ~~l~~y~~~~~~~~~~~v~~LL~-~GadvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~--GAdvn~~~-~~~tpL~~   75 (494)
T PHA02989          2 SSLYEYILYSDTVDKNALEFLLR-TGFDVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDN--GADVNYKG-YIETPLCA   75 (494)
T ss_pred             cHHHHHHHcCCcCcHHHHHHHHH-cCCCcccc--cCCCCHHHHHHhcCCCChHHHHHHHHc--CCCccCCC-CCCCcHHH
Confidence            35555444   478999999987 58999986  4689999876654  378999999999  99999886 67999999


Q ss_pred             HHHcC------CHHHHHHHHhcCccccccCCCCCCcHHHHHHHc---CChHHHHHHHhccc-c-ccCcCchhhHHHHHHH
Q 037778           82 AAASG------MVELAREIMTHNKAIATEQDDKRVLPIDLAASL---GHEDMVVYLYGQTK-N-SLNDEDRSHLLVTLIQ  150 (575)
Q Consensus        82 Aa~~g------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~-~-~~~~~~g~t~L~~a~~  150 (575)
                      |+.++      +.+++++|+++|+++ +.+|..|.||||.|+..   |+.+++++|+++|+ . +..+..|.||||+|+.
T Consensus        76 a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~  154 (494)
T PHA02989         76 VLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLE  154 (494)
T ss_pred             HHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHH
Confidence            98754      578999999999997 99999999999988765   67999999999999 6 7889999999999876


Q ss_pred             h--CcHHHHHHHHHhhhcccccc-ccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhh
Q 037778          151 T--DLYDVALRVFEDLHEKSAIG-RAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVL  227 (575)
Q Consensus       151 ~--~~~~~~~~Ll~~~~~~~~~~-~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~  227 (575)
                      .  ++.++++.|+++  +.+++. .+..|.||||.|+..+.                      .....+++++|++.|++
T Consensus       155 ~~~~~~~iv~~Ll~~--Gadi~~~~~~~g~tpL~~a~~~~~----------------------~~~~~~iv~~Ll~~Ga~  210 (494)
T PHA02989        155 SFSVKKDVIKILLSF--GVNLFEKTSLYGLTPMNIYLRNDI----------------------DVISIKVIKYLIKKGVN  210 (494)
T ss_pred             hccCCHHHHHHHHHc--CCCccccccccCCChHHHHHhccc----------------------ccccHHHHHHHHhCCCC
Confidence            4  588999999997  888887 68899999999987641                      00137899999999999


Q ss_pred             CChhhhhcccCCChHHHHHHHcC------CHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhh
Q 037778          228 LSDSRISNLIAEPELIFDAARQG------NLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDL  301 (575)
Q Consensus       228 ~~~~~~~~~~~~~tpLh~Aa~~g------~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  301 (575)
                      ++..+    .++.+|+|.++..+      ..+++++|++ +++ ++.+|..|+||||+|+..++.+++++|+++|++++.
T Consensus       211 vn~~~----~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~  284 (494)
T PHA02989        211 IETNN----NGSESVLESFLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYN  284 (494)
T ss_pred             ccccC----CccccHHHHHHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccc
Confidence            98876    34559999877643      5678887665 688 899999999999999999999999999999999865


Q ss_pred             hhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          302 ILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       302 l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                          +|..|+||||+|+..++.++++.+
T Consensus       285 ----~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        285 ----VSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             ----cCCCCCCHHHHHHHcCCHHHHHHH
Confidence                899999999999999998877655

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-36  Score=255.20  Aligned_cols=210  Identities=19%  Similarity=0.214  Sum_probs=173.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .+.++.+.+++......++++++..+..++.+.|.+|+||||+||..|+.++|++|++.. +..+|.+|..|+||||+|+
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~-nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQP-NVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcC-CCCCCCccccCCchhhhhh
Confidence            467889999999999999999999888899987779999999999999999999999853 7779999999999999999


Q ss_pred             HcCCHHHHHHHHhc-CccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778           84 ASGMVELAREIMTH-NKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFE  162 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  162 (575)
                      ..|+.|+|+.|+.+ ++++ +..++.|.||||+|+..|+.|++++|+++++                             
T Consensus        81 s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga-----------------------------  130 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGA-----------------------------  130 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCC-----------------------------
Confidence            99999999999999 8886 9999999999999999999999999988754                             


Q ss_pred             hhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChH
Q 037778          163 DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPEL  242 (575)
Q Consensus       163 ~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tp  242 (575)
                           .++.+|..|.||||.|+..                                                        
T Consensus       131 -----~i~~kD~~~qtplHRAAav--------------------------------------------------------  149 (226)
T KOG4412|consen  131 -----LIRIKDKQGQTPLHRAAAV--------------------------------------------------------  149 (226)
T ss_pred             -----CCcccccccCchhHHHHhc--------------------------------------------------------
Confidence                 4456666666655555544                                                        


Q ss_pred             HHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHh
Q 037778          243 IFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA  318 (575)
Q Consensus       243 Lh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa  318 (575)
                             |+.+++++|+..++. ++..|+.|+||||.|.-.|+.++..+|+++|++.++    .|++| ||+-.|+
T Consensus       150 -------Gklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~----edke~-t~~~~a~  212 (226)
T KOG4412|consen  150 -------GKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDR----EDKEG-TALRIAC  212 (226)
T ss_pred             -------cchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhccceee----ccccC-chHHHHH
Confidence                   456666666666666 677777777777777767777777777777777765    67777 7765554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.9e-35  Score=305.48  Aligned_cols=246  Identities=16%  Similarity=0.145  Sum_probs=174.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHc
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS   85 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~   85 (575)
                      +++||.|+..|+.++++.|++ .+.+++.. +.+|.||||+|+..|+.+++++|+++  |++++.++.+|.||||.|+..
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~-~g~~~n~~-~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLD-IGINPNFE-IYDGISPIKLAMKFRDSEAIKLLMKH--GAIPDVKYPDIESELHDAVEE   78 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHH-CCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccCCCcccHHHHHHHC
Confidence            466666666666666666665 35666655 55666666666666666666666666  666666666666666666666


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhh
Q 037778           86 GMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLH  165 (575)
Q Consensus        86 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  165 (575)
                      |+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.|+                                
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga--------------------------------  126 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA--------------------------------  126 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCC--------------------------------
Confidence            666666666666665544455566666666666666666666666544                                


Q ss_pred             ccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHH
Q 037778          166 EKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFD  245 (575)
Q Consensus       166 ~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~  245 (575)
                        +++.++.+|.||||+|+..++                          .++++.|++.|++++..+    ..|.||||+
T Consensus       127 --d~~~~~~~g~tpLh~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~d----~~g~TpL~~  174 (413)
T PHA02875        127 --DPDIPNTDKFSPLHLAVMMGD--------------------------IKGIELLIDHKACLDIED----CCGCTPLII  174 (413)
T ss_pred             --CCCCCCCCCCCHHHHHHHcCC--------------------------HHHHHHHHhcCCCCCCCC----CCCCCHHHH
Confidence              445566666677777766663                          566677777766666544    334488888


Q ss_pred             HHHcCCHHHHHHHHHHCCCccccccCCC-CchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCC
Q 037778          246 AARQGNLEFLLILIREYPDLIWNIDENG-YTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLP  321 (575)
Q Consensus       246 Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G-~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~  321 (575)
                      |+..|+.++++.|+++|++ ++..+.+| .||+|+|+.+++.+++++|+++|++++.. +..|.+|.|||++++...
T Consensus       175 A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~-~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        175 AMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM-FMIEGEECTILDMICNMC  249 (413)
T ss_pred             HHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH-hhcCCCchHHHHHHHhhc
Confidence            8888899999999999999 67777776 48899999999999999999999999874 446889999999987543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=303.16  Aligned_cols=224  Identities=13%  Similarity=0.061  Sum_probs=185.9

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCc-cccccCCChHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL-AQENNVGYTALF   80 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l-~~~d~~g~TpLh   80 (575)
                      ...|.||||.|+..|+.++++.|++ .+++++.. +.++.||||.|+..|+.++|+.|++.  +.+. +..+.+|.||||
T Consensus        32 ~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~tpL~  107 (413)
T PHA02875         32 IYDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVK-YPDIESELHDAVEEGDVKAVEELLDL--GKFADDVFYKDGMTPLH  107 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccc-CCCcccHHHHHHHCCCHHHHHHHHHc--CCcccccccCCCCCHHH
Confidence            3479999999999999999998888 57777776 78899999999999999999999998  5554 456778999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        81 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      +|+..|+.++++.|+++|+++ +.++..|.||||+|+..|+.+++++|+++++                           
T Consensus       108 ~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~---------------------------  159 (413)
T PHA02875        108 LATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKA---------------------------  159 (413)
T ss_pred             HHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC---------------------------
Confidence            999999999999999999996 8899999999999999999999999998755                           


Q ss_pred             HHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCC
Q 037778          161 FEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEP  240 (575)
Q Consensus       161 l~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~  240 (575)
                             +++.+|..|.||||+|+..|+                          .+++++|++.|++++..+   ..++.
T Consensus       160 -------~~~~~d~~g~TpL~~A~~~g~--------------------------~eiv~~Ll~~ga~~n~~~---~~~~~  203 (413)
T PHA02875        160 -------CLDIEDCCGCTPLIIAMAKGD--------------------------IAICKMLLDSGANIDYFG---KNGCV  203 (413)
T ss_pred             -------CCCCCCCCCCCHHHHHHHcCC--------------------------HHHHHHHHhCCCCCCcCC---CCCCc
Confidence                   344566677777777777773                          677777777777777654   34445


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHCCCccccc---cCCCCchHHHHHHc---CChhHHHHHHh
Q 037778          241 ELIFDAARQGNLEFLLILIREYPDLIWNI---DENGYTIFHTAVLH---RRKRIFKLIYQ  294 (575)
Q Consensus       241 tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~---d~~G~t~Lh~A~~~---~~~~iv~~Ll~  294 (575)
                      ||+|+|+..|+.+++++|+++|+| ++..   +..|.||+++++..   ...+.++.++.
T Consensus       204 t~l~~A~~~~~~~iv~~Ll~~gad-~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li~  262 (413)
T PHA02875        204 AALCYAIENNKIDIVRLFIKRGAD-CNIMFMIEGEECTILDMICNMCTNLESEAIDALIA  262 (413)
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCcC-cchHhhcCCCchHHHHHHHhhcCCcccHHHHHHHH
Confidence            899999999999999999999999 5543   67899999987643   34556665553

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-34  Score=279.08  Aligned_cols=235  Identities=12%  Similarity=0.053  Sum_probs=198.7

Q ss_pred             cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHH
Q 037778           15 TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREI   94 (575)
Q Consensus        15 ~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~L   94 (575)
                      .++.+.++.|++ .++.  .+ |.+|.||||+|+..|+.++++.|++.  +++++.++  |+||||+|+..|+.++++.|
T Consensus         9 ~~~~~~~~~Lis-~~a~--~~-D~~G~TpLh~Aa~~g~~eiv~~Ll~~--ga~~n~~d--~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791          9 WKSKQLKSFLSS-KDAF--KA-DVHGHSALYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             cCHHHHHHHHHh-CCCC--CC-CCCCCcHHHHHHHcCCHHHHHHHHHC--cCCCcCCC--CCCHHHHHHHCCCHHHHHHH
Confidence            456677776666 4553  44 88999999999999999999999999  78887754  78999999999999999999


Q ss_pred             HhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCch-hhHHHHHHHhCcHHHHHHHHHhhhccccccc
Q 037778           95 MTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDR-SHLLVTLIQTDLYDVALRVFEDLHEKSAIGR  172 (575)
Q Consensus        95 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g-~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~  172 (575)
                      ++.|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..| .||||.|+..++.++++.|+++ .+..   .
T Consensus        81 L~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~-~~~~---~  155 (284)
T PHA02791         81 LFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST---F  155 (284)
T ss_pred             HHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc-CCcc---c
Confidence            9999997 8899999999999999999999999999998 66677776 5899999999999999999987 4332   2


Q ss_pred             c-CCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCC
Q 037778          173 A-ANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGN  251 (575)
Q Consensus       173 d-~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~  251 (575)
                      | ..|.||||+|+..|+                          .++++.|++.|++++.++   ..+..+|||.|+..|+
T Consensus       156 d~~~g~TpLh~Aa~~g~--------------------------~eiv~lLL~~gAd~n~~d---~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        156 DLAILLSCIHITIKNGH--------------------------VDMMILLLDYMTSTNTNN---SLLFIPDIKLAIDNKD  206 (284)
T ss_pred             ccccCccHHHHHHHcCC--------------------------HHHHHHHHHCCCCCCccc---CCCCChHHHHHHHcCC
Confidence            3 358999999999994                          889999999999988766   3344245999999999


Q ss_pred             HHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcch
Q 037778          252 LEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAK  299 (575)
Q Consensus       252 ~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~  299 (575)
                      .++++.|+++|++ ++.+|..| ++|      ++.|++++|+++.++.
T Consensus       207 ~e~v~lLl~~Ga~-in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        207 LEMLQALFKYDIN-IYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             HHHHHHHHHCCCC-CccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            9999999999999 78888854 555      7889999999877653

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.9e-34  Score=275.22  Aligned_cols=217  Identities=15%  Similarity=0.139  Sum_probs=194.2

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +.+|+||||+|+..|+.++++.|++ .+++++..   +|.||||+|+..|+.++|+.|++.  |++++.+|..|+||||+
T Consensus        27 D~~G~TpLh~Aa~~g~~eiv~~Ll~-~ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~--Gadvn~~d~~G~TpLh~  100 (284)
T PHA02791         27 DVHGHSALYYAIADNNVRLVCTLLN-AGALKNLL---ENEFPLHQAATLEDTKIVKILLFS--GMDDSQFDDKGNTALYY  100 (284)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-CcCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence            5679999999999999999998887 57777654   478999999999999999999998  89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCC-CcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKR-VLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      |+..|+.++++.|+++|+++ +.++..| .||||+|+..|+.++|++|+++++.......|.||||+|+..|+.++++.|
T Consensus       101 Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lL  179 (284)
T PHA02791        101 AVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL  179 (284)
T ss_pred             HHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHH
Confidence            99999999999999999997 7788877 599999999999999999999876222223589999999999999999999


Q ss_pred             HHhhhccccccccCCCCcH-HHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCC
Q 037778          161 FEDLHEKSAIGRAANEETA-LHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAE  239 (575)
Q Consensus       161 l~~~~~~~~~~~d~~g~tp-Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~  239 (575)
                      +++  +++++.+|..|.|| ||+|+..++                          .+++++|++.|++++.++    .+ 
T Consensus       180 L~~--gAd~n~~d~~g~t~~L~~Aa~~~~--------------------------~e~v~lLl~~Ga~in~~~----~~-  226 (284)
T PHA02791        180 LDY--MTSTNTNNSLLFIPDIKLAIDNKD--------------------------LEMLQALFKYDINIYSVN----LE-  226 (284)
T ss_pred             HHC--CCCCCcccCCCCChHHHHHHHcCC--------------------------HHHHHHHHHCCCCCccCc----cc-
Confidence            998  88999999999987 999999994                          899999999999999877    22 


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHCCC
Q 037778          240 PELIFDAARQGNLEFLLILIREYPD  264 (575)
Q Consensus       240 ~tpLh~Aa~~g~~~iv~~Ll~~~~d  264 (575)
                      .+||      |+.|++++||++..+
T Consensus       227 ~~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        227 NVLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             CccC------CCHHHHHHHHHhhhh
Confidence            2555      899999999999877

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=6e-35  Score=318.01  Aligned_cols=331  Identities=18%  Similarity=0.203  Sum_probs=268.9

Q ss_pred             CCcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHH
Q 037778            1 PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF   80 (575)
Q Consensus         1 p~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh   80 (575)
                      ++....||+|.|...|..++++.+++ .+...+.. +..|.||||+|+..|+.++...+...  +..-...+..|.||+|
T Consensus       304 ~~~~~kt~l~~a~~~g~~~i~~~~l~-~~~~~~aa-r~~g~t~lHlaa~~~~~~~~~~l~~~--~~~~~~a~~k~~~pl~  379 (1143)
T KOG4177|consen  304 KARDDQTPLHIASRLGHEEIVHLLLQ-AGATPNAA-RTAGYTPLHLAAKEGQVEVAGALLEH--GAQRRQAEEKGFTPLH  379 (1143)
T ss_pred             ccccccChhhhhcccchHHHHHHHhh-ccCCcccc-CcCCcccccHhhhhhhHHHHHHhhcc--ccccCcccccCCcchh
Confidence            35677889999999998888887777 47777776 78889999999999998877777776  6666677888899999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhC-cHHHHH
Q 037778           81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTD-LYDVAL  158 (575)
Q Consensus        81 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~-~~~~~~  158 (575)
                      .|+..|..+++++++.+|.+ ++..+..|.||||.|+..++.++|+.+++.++ .+..+..|.|++|.|+..+ ..+.+.
T Consensus       380 la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~  458 (1143)
T KOG4177|consen  380 LAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIAR  458 (1143)
T ss_pred             hhcccCchhHHHhhhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhh
Confidence            99999999999999998888 48888889999999999999999999998888 7888888899999998888 677777


Q ss_pred             HHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhcc---------chhhhHhhHH----HHHHHHHHHHHh
Q 037778          159 RVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFS---------AKDIENKRQK----ALKLVQRLWEKV  225 (575)
Q Consensus       159 ~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~e~v~~L~~~~  225 (575)
                      .+++.  +.+++..-..|.||||.|++.|+.      ..++.+.+         .+.....|..    ....++.++++|
T Consensus       459 ~l~~~--g~~~n~~s~~G~T~Lhlaaq~Gh~------~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~g  530 (1143)
T KOG4177|consen  459 LLLQY--GADPNAVSKQGFTPLHLAAQEGHT------EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHG  530 (1143)
T ss_pred             hHhhc--CCCcchhccccCcchhhhhccCCc------hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcC
Confidence            77765  888888888999999999888851      11111111         1112223322    256778888889


Q ss_pred             hhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhc
Q 037778          226 VLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF  305 (575)
Q Consensus       226 ~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~  305 (575)
                      ++.+..+    ..++||||.|+..|++++|+.|+++++| ++.+|+.|+||||.|+..|+.+++.+|+++|+++|.    
T Consensus       531 a~v~~~~----~r~~TpLh~A~~~g~v~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna----  601 (1143)
T KOG4177|consen  531 ANVDLRT----GRGYTPLHVAVHYGNVDLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA----  601 (1143)
T ss_pred             Cceehhc----ccccchHHHHHhcCCchHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc----
Confidence            8888876    4556999999999999999999999999 889999999999999999999999999999999864    


Q ss_pred             ccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccc-----cccccCCCCChhHHHHHh
Q 037778          306 EDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRS-----AEAKNEDGLSPRALFTRK  372 (575)
Q Consensus       306 ~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~-----~~~~n~~G~Tpl~~a~~~  372 (575)
                      .|.+|.||||.|+..|+.++++.+                   ...+..     ....|.+|.+|.++..+.
T Consensus       602 ~d~~g~TpL~iA~~lg~~~~~k~l-------------------~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRLGYLSVVKLL-------------------KVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             ccccCcchhHHHHHhcccchhhHH-------------------HhccCccccccchhhhhcccChhhHHHHh
Confidence            999999999999999998877665                   222333     677888999999987653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-33  Score=297.56  Aligned_cols=264  Identities=13%  Similarity=0.133  Sum_probs=224.5

Q ss_pred             ccchHHHHHHHcC--CHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcC------CHHHHHHHHHcCCCCCccccccCC
Q 037778            4 RRRLKLYRAALTG--DWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAK------QYGFVKELVQRMEPGDLAQENNVG   75 (575)
Q Consensus         4 ~~~t~L~~Aa~~g--~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g------~~~~v~~Ll~~~~~~~l~~~d~~g   75 (575)
                      +|.||||.++..+  +.++|+.|++ +|++++.+ + .+.||||.|+..+      +.++|++|+++  |++++.+|.+|
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~-~GAdvn~~-~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g  108 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLID-NGADVNYK-G-YIETPLCAVLRNREITSNKIKKIVKLLLKF--GADINLKTFNG  108 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHH-cCCCccCC-C-CCCCcHHHHHhccCcchhhHHHHHHHHHHC--CCCCCCCCCCC
Confidence            5889988766554  6899998888 69999986 4 5799999998764      57899999999  99999999999


Q ss_pred             ChHHHHHHHc---CCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc--CChHHHHHHHhccc-ccc-CcCchhhHHHHH
Q 037778           76 YTALFFAAAS---GMVELAREIMTHNKAIATEQDDKRVLPIDLAASL--GHEDMVVYLYGQTK-NSL-NDEDRSHLLVTL  148 (575)
Q Consensus        76 ~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~~~-~~~-~~~~g~t~L~~a  148 (575)
                      .||||.|+..   |+.+++++|+++|+++.+..|..|.||||+|+..  ++.+++++|+++|+ .+. .+..|.||||.|
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a  188 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY  188 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHH
Confidence            9999998765   6899999999999996468899999999998764  68999999999999 555 678999999999


Q ss_pred             HHhC----cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHH
Q 037778          149 IQTD----LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEK  224 (575)
Q Consensus       149 ~~~~----~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~  224 (575)
                      +..+    +.++++.|++.  |.+++.+|..|.||||.++..+...                    .....++++++.+ 
T Consensus       189 ~~~~~~~~~~~iv~~Ll~~--Ga~vn~~~~~~~t~l~~~~~~~~~~--------------------~~~~~~il~~l~~-  245 (494)
T PHA02989        189 LRNDIDVISIKVIKYLIKK--GVNIETNNNGSESVLESFLDNNKIL--------------------SKKEFKVLNFILK-  245 (494)
T ss_pred             HhcccccccHHHHHHHHhC--CCCccccCCccccHHHHHHHhchhh--------------------cccchHHHHHHHh-
Confidence            7754    89999999998  9999999999999999988765210                    0112567776654 


Q ss_pred             hhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778          225 VVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       225 ~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                      +++++..+    ..|.||||+|+..|+.++++.|+++|+| ++.+|..|+||||+|+.+++.++++.|++.+...+
T Consensus       246 ~advn~~d----~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        246 YIKINKKD----KKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             CCCCCCCC----CCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCChH
Confidence            68888766    3456999999999999999999999999 89999999999999999999999999999876543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.7e-34  Score=314.51  Aligned_cols=337  Identities=22%  Similarity=0.195  Sum_probs=285.5

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +.+|.||+|.||..|..+..+.+++ .+.++... +..+.||+|+|.+.|+.++++.+++.  +...+..+..|.||||+
T Consensus       272 ~vr~~tplh~AA~~~~~e~~~~ll~-~ga~~~~~-~~~~kt~l~~a~~~g~~~i~~~~l~~--~~~~~aar~~g~t~lHl  347 (1143)
T KOG4177|consen  272 TVRGETPLHMAARAGQVEVCKLLLQ-NGADVLAK-ARDDQTPLHIASRLGHEEIVHLLLQA--GATPNAARTAGYTPLHL  347 (1143)
T ss_pred             cccccCcchhhhccchhhhHhhhhc-cCcccccc-cccccChhhhhcccchHHHHHHHhhc--cCCccccCcCCcccccH
Confidence            4578999999999999999999988 58888887 88999999999999999999999999  89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      ++..|+.++...|...++.- ......|.||+|+|+.+|..+.++.++..+. .+..+.+|.||||.+...++.++++.+
T Consensus       348 aa~~~~~~~~~~l~~~~~~~-~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~  426 (1143)
T KOG4177|consen  348 AAKEGQVEVAGALLEHGAQR-RQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLL  426 (1143)
T ss_pred             hhhhhhHHHHHHhhcccccc-CcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEE
Confidence            99999999999999998886 7788899999999999999999999999999 899999999999999999999999999


Q ss_pred             HHhhhccccccccCCCCcHHHHHHhcCC-CCcccchhhhh---hhccchhhhHhhHHH----HHHHHHHHHHhhhCChhh
Q 037778          161 FEDLHEKSAIGRAANEETALHALARKNL-NYSHFTKQYQR---GFFSAKDIENKRQKA----LKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       161 l~~~~~~~~~~~d~~g~tpLh~a~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~----~e~v~~L~~~~~~~~~~~  232 (575)
                      +++  ++..+..+..|.||+|.|+..+. ...+..+-..+   .......++..|.++    .+++..+.+.++..+...
T Consensus       427 l~~--gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~  504 (1143)
T KOG4177|consen  427 LKR--GASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDA  504 (1143)
T ss_pred             ecc--CCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccc
Confidence            997  99999999999999999999983 11111100000   111112233333322    456666666664444433


Q ss_pred             hhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCc
Q 037778          233 ISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNN  312 (575)
Q Consensus       233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T  312 (575)
                          +.+-+++|.|+..+...+++.++++|.+ ++.++..|.||||+|+.+|+.++|++|+++|++.+.    +|+.|+|
T Consensus       505 ----~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~a----k~~~G~T  575 (1143)
T KOG4177|consen  505 ----KKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNA----KDKLGYT  575 (1143)
T ss_pred             ----hhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhhCCccccc----cCCCCCC
Confidence                3445899999999999999999999998 889999999999999999999999999999999854    9999999


Q ss_pred             HHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHHHhh
Q 037778          313 ILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKH  373 (575)
Q Consensus       313 ~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~~~  373 (575)
                      |||.||..|+.+++..|                   .-+|+++|..|.+|.|||++|.+..
T Consensus       576 PLH~Aa~~G~~~i~~LL-------------------lk~GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  576 PLHQAAQQGHNDIAELL-------------------LKHGASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             hhhHHHHcChHHHHHHH-------------------HHcCCCCCcccccCcchhHHHHHhc
Confidence            99999999987766555                   4489999999999999999997643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.4e-34  Score=274.01  Aligned_cols=179  Identities=17%  Similarity=0.137  Sum_probs=164.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCccccc-------CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCC
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAP-------ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGY   76 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~-------~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~   76 (575)
                      .|.|||..||++|+.++|++++++.++++...       ...+|-+||-.|+..||.++|+.|+++  ++++|.......
T Consensus        41 ~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~--ga~VN~tT~TNS  118 (615)
T KOG0508|consen   41 NGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR--GASVNDTTRTNS  118 (615)
T ss_pred             CCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh--cCccccccccCC
Confidence            57899999999999999999999877665432       135688999999999999999999999  899999988899


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHH
Q 037778           77 TALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYD  155 (575)
Q Consensus        77 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~  155 (575)
                      |||--||..|+.++||+|+++++++ ++.|..|.|.||+||..||.+++++|++.++ ++.++..|+|+||.|++.|+.|
T Consensus       119 tPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd  197 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD  197 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence            9999999999999999999999996 9999999999999999999999999999999 8999999999999999999999


Q ss_pred             HHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778          156 VALRVFEDLHEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       156 ~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      +++.|+++  +.-+ .+|..|.|||..|+..|.
T Consensus       198 ivq~Ll~~--ga~i-~~d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  198 IVQLLLKH--GAKI-DVDGHGMTPLLLAAVTGH  227 (615)
T ss_pred             HHHHHHhC--Ccee-eecCCCCchHHHHhhhcc
Confidence            99999997  5544 567779999999999994

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-32  Score=288.70  Aligned_cols=319  Identities=13%  Similarity=0.082  Sum_probs=224.3

Q ss_pred             HHHHHHHhhCCCcccccCCCCCChHHhHHHHcC---CHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC--CHHHHHH
Q 037778           19 AVARGIYDVHEGEIRAPISKRKDTALHIAAAAK---QYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG--MVELARE   93 (575)
Q Consensus        19 ~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g---~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g--~~~iv~~   93 (575)
                      ..++..++ +..+++...|.+|+||||+|+..|   +.|+|++|+++  |++++.+|..|+||||+|+..+  +.|+|++
T Consensus        21 ~~~~~~~~-~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~--GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~   97 (672)
T PHA02730         21 KKIKLEIE-TCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR--GVERLCRNNEGLTPLGVYSKRKYVKSQIVHL   97 (672)
T ss_pred             HHHHHHHH-HhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC--CCCCcccCCCCCChHHHHHHcCCCcHHHHHH
Confidence            45665555 445666444889999999999997   59999999999  9999999999999999999977  7999999


Q ss_pred             HHhcCccc-cccCCCCCCcHHHHHHH--cCChHHHHHHHhccc--cccC----c-CchhhHHHHHHHhCcHHHHHHHHHh
Q 037778           94 IMTHNKAI-ATEQDDKRVLPIDLAAS--LGHEDMVVYLYGQTK--NSLN----D-EDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus        94 Ll~~~~~~-~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~--~~~~----~-~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      |++.|++. ++..+..+.+|||.++.  +++.+++++|++.+.  ++..    + ..|.+|++++...++.+++++|++.
T Consensus        98 Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~  177 (672)
T PHA02730         98 LISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS  177 (672)
T ss_pred             HHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc
Confidence            99996542 25577778999999888  889999999997443  3322    1 3789999999999999999999998


Q ss_pred             hhccccc-------cccCCCC-cHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhc
Q 037778          164 LHEKSAI-------GRAANEE-TALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISN  235 (575)
Q Consensus       164 ~~~~~~~-------~~d~~g~-tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~  235 (575)
                        ++..+       ..+..+. |.||+..-....                    ......|++++|+++|++++.++   
T Consensus       178 --g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~--------------------~~~n~~eiv~lLIs~GadIN~kd---  232 (672)
T PHA02730        178 --ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRE--------------------SESLSKDVIKCLIDNNVSIHGRD---  232 (672)
T ss_pred             --CCcccccccccccccCCccchhHHHHHHhhhh--------------------hhccCHHHHHHHHHCCCCCCCCC---
Confidence              77663       2333444 456655544310                    01114778888888888887766   


Q ss_pred             ccCCChHHHH--HHHcCCHHHHHHHHH--------------------------------HCCCcccc-------------
Q 037778          236 LIAEPELIFD--AARQGNLEFLLILIR--------------------------------EYPDLIWN-------------  268 (575)
Q Consensus       236 ~~~~~tpLh~--Aa~~g~~~iv~~Ll~--------------------------------~~~d~~~~-------------  268 (575)
                       ..|.||||+  |...|+.|+++.|++                                ++.| ...             
T Consensus       233 -~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~  310 (672)
T PHA02730        233 -EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLID  310 (672)
T ss_pred             -CCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchh
Confidence             344588874  555667888888887                                4555 223             


Q ss_pred             -------ccCCCCc---------------------hHHHHHHcC---ChhHHHHHHhcCcchhhhhhcccCCCCcHHHHH
Q 037778          269 -------IDENGYT---------------------IFHTAVLHR---RKRIFKLIYQIGAAKDLILKFEDPKKNNILHLA  317 (575)
Q Consensus       269 -------~d~~G~t---------------------~Lh~A~~~~---~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlA  317 (575)
                             .|..|.+                     .||.=.+++   +.+++++|+++|++++.     +..|+||||+|
T Consensus       311 ~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~-----k~~G~TpLH~A  385 (672)
T PHA02730        311 VMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK-----TTDNNYPLHDY  385 (672)
T ss_pred             hhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc-----CCCCCcHHHHH
Confidence                   4556654                     566555544   56777777777777752     36777777777


Q ss_pred             hhCCC----CCcccccc--ch-------------hHh---hHH---------HHHHHHHHHHhh-cccccccccCCCCCh
Q 037778          318 AMLPP----QDRLNIVS--GA-------------ALQ---MQR---------ELLWFEEVEKAV-QRRSAEAKNEDGLSP  365 (575)
Q Consensus       318 a~~~~----~~~~~~l~--~~-------------~l~---~~~---------~l~w~~~v~~~~-~~~~~~~~n~~G~Tp  365 (575)
                      +..+.    .++++.|-  |+             +++   .+.         +..-.+.++.++ .+++++.+|+.|+||
T Consensus       386 a~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TP  465 (672)
T PHA02730        386 FVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTL  465 (672)
T ss_pred             HHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCH
Confidence            76653    45554441  21             121   010         000112245555 889999999999999


Q ss_pred             hHHHHHh
Q 037778          366 RALFTRK  372 (575)
Q Consensus       366 l~~a~~~  372 (575)
                      |++|...
T Consensus       466 Lh~Aa~~  472 (672)
T PHA02730        466 LYYAVDV  472 (672)
T ss_pred             HHHHHHh
Confidence            9999764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=292.27  Aligned_cols=271  Identities=13%  Similarity=0.197  Sum_probs=153.4

Q ss_pred             HHHHHHHHhhCCCcccccCCCCCChHHhHHHH--cCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHc-----CCHHH
Q 037778           18 WAVARGIYDVHEGEIRAPISKRKDTALHIAAA--AKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS-----GMVEL   90 (575)
Q Consensus        18 ~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~--~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~-----g~~~i   90 (575)
                      .+.|+.+++. + +++..  .+|.|+++.+..  .++.++|++|+++  |++++.+|..|.||||.|+.+     ++.++
T Consensus        18 ~~~v~~ll~~-~-~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~i   91 (489)
T PHA02798         18 LSTVKLLIKS-C-NPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINL--GANVNGLDNEYSTPLCTILSNIKDYKHMLDI   91 (489)
T ss_pred             HHHHHHHHhc-C-Chhhh--cccchHHHHHHhCCCCCHHHHHHHHHC--CCCCCCCCCCCCChHHHHHHhHHhHHhHHHH
Confidence            4566666642 1 22222  234455543333  2356666666666  666666666666666666543     45666


Q ss_pred             HHHHHhcCccccccCCCCCCcHHHHHHHcC---ChHHHHHHHhccc-cccCcCchhhHHHHHHHhCc---HHHHHHHHHh
Q 037778           91 AREIMTHNKAIATEQDDKRVLPIDLAASLG---HEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL---YDVALRVFED  163 (575)
Q Consensus        91 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g---~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~  163 (575)
                      ++.|+++|+++ +.+|..|.||||+|+..+   +.+++++|+++|+ .+..|.+|.||||.|+..++   .++++.|++.
T Consensus        92 v~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~  170 (489)
T PHA02798         92 VKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK  170 (489)
T ss_pred             HHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh
Confidence            66666666664 666666666666666654   4566666666666 55566666666666666555   6666666665


Q ss_pred             hhcccccccc-CCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChH
Q 037778          164 LHEKSAIGRA-ANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPEL  242 (575)
Q Consensus       164 ~~~~~~~~~d-~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tp  242 (575)
                        +.+++.++ ..|.||||.++..+..  ..                    ..+++++|+++|++++..+   ..+ .++
T Consensus       171 --gadin~~~~~~~~t~Lh~~~~~~~~--~~--------------------~~~ivk~Li~~Ga~i~~~~---~~~-~~~  222 (489)
T PHA02798        171 --GVDINTHNNKEKYDTLHCYFKYNID--RI--------------------DADILKLFVDNGFIINKEN---KSH-KKK  222 (489)
T ss_pred             --CCCcccccCcCCCcHHHHHHHhccc--cC--------------------CHHHHHHHHHCCCCcccCC---ccc-cch
Confidence              55555553 3566666665542100  00                    1456666666666665544   112 233


Q ss_pred             HH-------HHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHH
Q 037778          243 IF-------DAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILH  315 (575)
Q Consensus       243 Lh-------~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LH  315 (575)
                      ++       .+...++.++++.|+. ++| ++.+|..|+||||+|+.+++.+++++|+++|++++.    +|..|+||||
T Consensus       223 ~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~----~d~~G~TpL~  296 (489)
T PHA02798        223 FMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINI----ITELGNTCLF  296 (489)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccc----cCCCCCcHHH
Confidence            33       2334455566655444 355 566666666666666666666666666666666543    6666666666


Q ss_pred             HHhhCCCCCccccc
Q 037778          316 LAAMLPPQDRLNIV  329 (575)
Q Consensus       316 lAa~~~~~~~~~~l  329 (575)
                      +|+..++.+++..+
T Consensus       297 ~A~~~~~~~iv~~l  310 (489)
T PHA02798        297 TAFENESKFIFNSI  310 (489)
T ss_pred             HHHHcCcHHHHHHH
Confidence            66666665554443

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=292.23  Aligned_cols=266  Identities=13%  Similarity=0.126  Sum_probs=226.1

Q ss_pred             ccchHHHHHHH--cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHc-----CCHHHHHHHHHcCCCCCccccccCCC
Q 037778            4 RRRLKLYRAAL--TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAA-----KQYGFVKELVQRMEPGDLAQENNVGY   76 (575)
Q Consensus         4 ~~~t~L~~Aa~--~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~-----g~~~~v~~Ll~~~~~~~l~~~d~~g~   76 (575)
                      .+.|+++.+..  .++.++++.|++ +|++++.. |..|.||||.|+..     ++.++++.|+++  |++++.+|.+|+
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~-~Gadvn~~-d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~--GadiN~~d~~G~  110 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFIN-LGANVNGL-DNEYSTPLCTILSNIKDYKHMLDIVKILIEN--GADINKKNSDGE  110 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHH-CCCCCCCC-CCCCCChHHHHHHhHHhHHhHHHHHHHHHHC--CCCCCCCCCCcC
Confidence            45676664444  458899998888 69999987 99999999999864     779999999999  999999999999


Q ss_pred             hHHHHHHHcC---CHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC---hHHHHHHHhccc-cccC-cCchhhHHHHH
Q 037778           77 TALFFAAASG---MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH---EDMVVYLYGQTK-NSLN-DEDRSHLLVTL  148 (575)
Q Consensus        77 TpLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~-~~~~-~~~g~t~L~~a  148 (575)
                      ||||+|+.+|   +.+++++|+++|+++ +.+|..|.||||+|++.|+   .+++++|++.|+ .+.. +..|.||||.+
T Consensus       111 TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~  189 (489)
T PHA02798        111 TPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCY  189 (489)
T ss_pred             cHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHH
Confidence            9999999876   789999999999997 9999999999999999998   999999999998 5544 56789999998


Q ss_pred             HHh----CcHHHHHHHHHhhhccccccccCCCCcHHHHHHh-cCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHH
Q 037778          149 IQT----DLYDVALRVFEDLHEKSAIGRAANEETALHALAR-KNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWE  223 (575)
Q Consensus       149 ~~~----~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~  223 (575)
                      +..    ++.++++.|+++  |.+++..+..|.++++-... ...                    .......+++++|.+
T Consensus       190 ~~~~~~~~~~~ivk~Li~~--Ga~i~~~~~~~~~~~~~~l~~l~~--------------------~~~~~~~~i~~~l~~  247 (489)
T PHA02798        190 FKYNIDRIDADILKLFVDN--GFIINKENKSHKKKFMEYLNSLLY--------------------DNKRFKKNILDFIFS  247 (489)
T ss_pred             HHhccccCCHHHHHHHHHC--CCCcccCCccccchHHHHHHHHHh--------------------hcccchHHHHHHHHh
Confidence            764    479999999998  99999999999998873321 110                    001113567776655


Q ss_pred             HhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhh
Q 037778          224 KVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLI  302 (575)
Q Consensus       224 ~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l  302 (575)
                       +++++..+    ..|.||||.|+..|+.++++.|++.|+| ++.+|..|+||||+|+++++.++++.|++++++++.+
T Consensus       248 -~~dvN~~d----~~G~TPL~~A~~~~~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        248 -YIDINQVD----ELGFNPLYYSVSHNNRKIFEYLLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             -cCCCCCcC----cCCccHHHHHHHcCcHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence             68888776    3456999999999999999999999999 8999999999999999999999999999999998763

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.2e-32  Score=293.49  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=88.2

Q ss_pred             HHHHHHHHH-HhhhCChhhhhcccCCChHHHHHHHcC-----------------------CHHHHHHHHHHCCCcccccc
Q 037778          215 LKLVQRLWE-KVVLLSDSRISNLIAEPELIFDAARQG-----------------------NLEFLLILIREYPDLIWNID  270 (575)
Q Consensus       215 ~e~v~~L~~-~~~~~~~~~~~~~~~~~tpLh~Aa~~g-----------------------~~~iv~~Ll~~~~d~~~~~d  270 (575)
                      .++++.|+. .|++.+..+    +.|.||||.|++.+                       ..++++.|+++|++ ++.+|
T Consensus       375 ~~~i~~LL~~~ga~~~~~~----~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAd-IN~kd  449 (661)
T PHA02917        375 SYTMKYLLKKEGGDAVNHL----DDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKD-INMID  449 (661)
T ss_pred             HHHHHHHHHhcCCCccccC----CCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCC-CCCCC
Confidence            457788887 577766655    23669999987543                       35788999999999 89999


Q ss_pred             CCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhh-CCCCCccccc
Q 037778          271 ENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAM-LPPQDRLNIV  329 (575)
Q Consensus       271 ~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~-~~~~~~~~~l  329 (575)
                      ..|+||||+|+..++.+++++|+++|++++.    +|..|+||||+|+. .++.++++.+
T Consensus       450 ~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~----~d~~G~T~L~~A~~~~~~~~iv~~L  505 (661)
T PHA02917        450 KRGETLLHKAVRYNKQSLVSLLLESGSDVNI----RSNNGYTCIAIAINESRNIELLKML  505 (661)
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHCcCCCCC----CCCCCCCHHHHHHHhCCCHHHHHHH
Confidence            9999999999999999999999999999865    99999999999996 5666665554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-33  Score=238.87  Aligned_cols=177  Identities=24%  Similarity=0.242  Sum_probs=168.0

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      .+|+||||+|+..|+.+++..|+.+.+..++.+ |..|+||||+|+..|+.|+|+.|+.+. +.|+|..+..|.||||+|
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s~g~~evVk~Ll~r~-~advna~tn~G~T~LHyA  113 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAASNGNDEVVKELLNRS-GADVNATTNGGQTCLHYA  113 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhhcCcHHHHHHHhcCC-CCCcceecCCCcceehhh
Confidence            489999999999999999999998777788888 999999999999999999999999996 899999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      +..|..+|+++|+++|+.+ +.+|..|.||||-|+.-|+.+++++|+..++ .+.+|..|+||||.|+..++.+++..|+
T Consensus       114 agK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV  192 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLV  192 (226)
T ss_pred             hcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHH
Confidence            9999999999999999886 9999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             HhhhccccccccCCCCcHHHHHHh
Q 037778          162 EDLHEKSAIGRAANEETALHALAR  185 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g~tpLh~a~~  185 (575)
                      ++  +++....|++| ||+..++.
T Consensus       193 ~~--gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  193 RA--GADTDREDKEG-TALRIACN  213 (226)
T ss_pred             Hh--ccceeeccccC-chHHHHHH
Confidence            98  89999999988 99887763

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.98  E-value=7.7e-32  Score=260.46  Aligned_cols=174  Identities=20%  Similarity=0.234  Sum_probs=154.5

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      .+|-+||-.|+..|++++|+.|+++ ++++|.. +....|||--||..|+.|+|++|+++  ++|++..|..|.|+||+|
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~-ga~VN~t-T~TNStPLraACfDG~leivKyLvE~--gad~~IanrhGhTcLmIa  157 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRR-GASVNDT-TRTNSTPLRAACFDGHLEIVKYLVEH--GADPEIANRHGHTCLMIA  157 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHh-cCccccc-cccCCccHHHHHhcchhHHHHHHHHc--CCCCcccccCCCeeEEee
Confidence            4688999999999999999988885 6999986 77778999999999999999999999  999999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFE  162 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  162 (575)
                      |..||.+|+++|++.|+++ +.++..|.|+||.|++.|+.|++++|+.+++....|..|.|||..|...|+.+++..|++
T Consensus       158 ~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  158 CYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             eccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999997 999999999999999999999999999999955567779999999999999999999996


Q ss_pred             hhhccccccccCCCCcHHHHHHhcCCCC
Q 037778          163 DLHEKSAIGRAANEETALHALARKNLNY  190 (575)
Q Consensus       163 ~~~~~~~~~~d~~g~tpLh~a~~~~~~~  190 (575)
                      .         +.++...++..--.|..|
T Consensus       237 ~---------~~sr~~riealEllGat~  255 (615)
T KOG0508|consen  237 C---------ETSRESRIEALELLGATY  255 (615)
T ss_pred             C---------CcchhhHHHHHHHhcccc
Confidence            4         223444455444445433

>PHA02792 ankyrin-like protein; Provisional

Probab=99.98  E-value=4.8e-31  Score=274.68  Aligned_cols=332  Identities=8%  Similarity=0.013  Sum_probs=208.2

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhH-HHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHI-AAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~-Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      .+|.||||.-..+.+..+=..++-.-+...+.. +-+|.+|+|+ |...|+.|+|++|+++  |+++|.++..|.||+|+
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~s~n~~lElvk~LI~~--GAdvN~~~n~~~~~l~y  111 (631)
T PHA02792         35 YDGETPLKAYVTKKNNNIKNDVVILLLSSVDYK-NINDFDIFEYLCSDNIDIELLKLLISK--GLEINSIKNGINIVEKY  111 (631)
T ss_pred             cCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcC-ccCCccHHHHHHHhcccHHHHHHHHHc--CCCcccccCCCCcceeE
Confidence            356788887765555322111221123334444 6677778874 5567888888888888  88888888888888888


Q ss_pred             HHH-cCCHHHHHHHHhcCcccccc------------------------------------CCCCCCcHHHHHHHcC----
Q 037778           82 AAA-SGMVELAREIMTHNKAIATE------------------------------------QDDKRVLPIDLAASLG----  120 (575)
Q Consensus        82 Aa~-~g~~~iv~~Ll~~~~~~~~~------------------------------------~~~~g~tpL~~A~~~g----  120 (575)
                      |+. .++.|++++|+++|++. +.                                    .|..|.||||+|+.++    
T Consensus       112 a~~~~~~~eivk~Ll~~Gad~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~  190 (631)
T PHA02792        112 ATTSNPNVDVFKLLLDKGIPT-CSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDG  190 (631)
T ss_pred             eecCCCChHHHHHHHHCCCCc-ccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCccc
Confidence            865 68888888888888763 22                                    3334555555555555    


Q ss_pred             ---ChHHHHHHHhccc-cccCcCchhhHHHHHHHhC--cHHHHHHHHHhhhcccc-cc------------ccCCCC---c
Q 037778          121 ---HEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTD--LYDVALRVFEDLHEKSA-IG------------RAANEE---T  178 (575)
Q Consensus       121 ---~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~-~~------------~d~~g~---t  178 (575)
                         +.|+++.|+++|+ .+..|..|.||||+|+.+.  ..|+++.|++.  +..- ..            +..++.   -
T Consensus       191 ~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~--~~~~~~~~~~l~~y~~~~~~~~~~~id~~  268 (631)
T PHA02792        191 YATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS--NYSGNELMNILSNYLRKQYRNKNHKIDNY  268 (631)
T ss_pred             ccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc--cccccchHhHHHHHHHHHhccCccCccHH
Confidence               4555555555554 4444445555555555555  44555555443  0000 00            000000   0


Q ss_pred             HHHHHHhcCCCC-cccchh----------hhhhhccchhhhHhhH------HHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778          179 ALHALARKNLNY-SHFTKQ----------YQRGFFSAKDIENKRQ------KALKLVQRLWEKVVLLSDSRISNLIAEPE  241 (575)
Q Consensus       179 pLh~a~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~------~~~e~v~~L~~~~~~~~~~~~~~~~~~~t  241 (575)
                      -+......+..+ -.+.+.          .++... ..-+..+|.      ...+++++|++.|++...      .....
T Consensus       269 iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r------~~~~n  341 (631)
T PHA02792        269 IVDKLLSGHDTFYILELCNSLRNNIIISSILKRYT-DSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR------FKHIN  341 (631)
T ss_pred             HHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHh-HHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc------CCcch
Confidence            000000000000 000000          000000 000111111      136789999999988642      12337


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCccccccCCC--CchHHHHHHcCChh---HHHHHHhcCcchhhhhhcccCCCCcHHHH
Q 037778          242 LIFDAARQGNLEFLLILIREYPDLIWNIDENG--YTIFHTAVLHRRKR---IFKLIYQIGAAKDLILKFEDPKKNNILHL  316 (575)
Q Consensus       242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G--~t~Lh~A~~~~~~~---iv~~Ll~~~~~~~~l~~~~d~~G~T~LHl  316 (575)
                      +++.|+..|+.++++.|+++|++ ++.+|.+|  .||||.|......+   ++++|+++|++++.    +|..|+||||+
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~----kD~~G~TPLh~  416 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINK----IDKHGRSILYY  416 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccc----ccccCcchHHH
Confidence            79999999999999999999999 78888775  69999988776554   58889999999854    99999999999


Q ss_pred             HhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHHH
Q 037778          317 AAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTR  371 (575)
Q Consensus       317 Aa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~  371 (575)
                      |+..++.+.++.|                   +..|++++.+|+.|+||+++|..
T Consensus       417 Aa~~~n~eivelL-------------------Ls~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        417 CIESHSVSLVEWL-------------------IDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHcCCHHHHHHH-------------------HHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999987766655                   55899999999999999999865

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.3e-30  Score=263.07  Aligned_cols=208  Identities=24%  Similarity=0.316  Sum_probs=130.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHHHHHcC
Q 037778            8 KLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFFAAASG   86 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~Aa~~g   86 (575)
                      .++.|++.|+++.|+.+++..+.+++.. |.+|.|+||+||.+++.+++++|+++  ++++|... .-|.||||+|+++|
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~-D~~g~tlLHWAAiNNrl~v~r~li~~--gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNP-DREGVTLLHWAAINNRLDVARYLISH--GADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCC-CcCCccceeHHHHcCcHHHHHHHHHc--CCCccccCCCCCCCcchHHHHcC
Confidence            3455555555555555555445555554 55555555555555555555555555  55555555 33555555555555


Q ss_pred             CHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhc
Q 037778           87 MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHE  166 (575)
Q Consensus        87 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  166 (575)
                      +..+|+.|+++|++. +.+|.+|.+|||+|++.|+...|-+|+.+                                  +
T Consensus       124 ~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~----------------------------------~  168 (600)
T KOG0509|consen  124 HISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSK----------------------------------G  168 (600)
T ss_pred             cHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHh----------------------------------c
Confidence            555555555555553 55555555555555555555555555543                                  4


Q ss_pred             cccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHH
Q 037778          167 KSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDA  246 (575)
Q Consensus       167 ~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~A  246 (575)
                      .+++.+|.+|+||||+|+.++                                                           
T Consensus       169 ~d~d~~D~~grTpLmwAaykg-----------------------------------------------------------  189 (600)
T KOG0509|consen  169 ADIDLRDNNGRTPLMWAAYKG-----------------------------------------------------------  189 (600)
T ss_pred             ccCCCcCCCCCCHHHHHHHhc-----------------------------------------------------------
Confidence            556677777777777777666                                                           


Q ss_pred             HHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhC
Q 037778          247 ARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAML  320 (575)
Q Consensus       247 a~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~  320 (575)
                          +...++.|++.+++.....|.+|+||||+|+..|+..++++|++-|++.+.    +|.+|.||+.+|.+.
T Consensus       190 ----~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~----~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  190 ----FALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDK----TNTNGKTPFDLAQER  255 (600)
T ss_pred             ----ccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccc----cccCCCCHHHHHHHh
Confidence                333467777777773333347888888888888888888866666666654    777788888888665

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.1e-29  Score=253.20  Aligned_cols=210  Identities=22%  Similarity=0.231  Sum_probs=178.4

Q ss_pred             ChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCcHHHHHHHc
Q 037778           41 DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD-DKRVLPIDLAASL  119 (575)
Q Consensus        41 ~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~  119 (575)
                      .+-.+.|++.|..+-|+.|++.. +.+++..|.+|.|+||+||.+++.+++++|+++|+++ +..+ .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHc
Confidence            45678899999999999999885 7889999999999999999999999999999999997 5555 6788999999999


Q ss_pred             CChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhh
Q 037778          120 GHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQR  199 (575)
Q Consensus       120 g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~  199 (575)
                      |+..+|++|+++|+                                  +++.+|.+|.+|+|.|++.             
T Consensus       123 G~~~vv~lLlqhGA----------------------------------dpt~~D~~G~~~lHla~~~-------------  155 (600)
T KOG0509|consen  123 GHISVVDLLLQHGA----------------------------------DPTLKDKQGLTPLHLAAQF-------------  155 (600)
T ss_pred             CcHHHHHHHHHcCC----------------------------------CCceecCCCCcHHHHHHHh-------------
Confidence            99999998888754                                  5556777777666666554             


Q ss_pred             hhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHH
Q 037778          200 GFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHT  279 (575)
Q Consensus       200 ~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~  279 (575)
                                                                        |+.-++-+++..+.| ++.+|.+|+||||+
T Consensus       156 --------------------------------------------------~~~~~vayll~~~~d-~d~~D~~grTpLmw  184 (600)
T KOG0509|consen  156 --------------------------------------------------GHTALVAYLLSKGAD-IDLRDNNGRTPLMW  184 (600)
T ss_pred             --------------------------------------------------CchHHHHHHHHhccc-CCCcCCCCCCHHHH
Confidence                                                              466777888888888 89999999999999


Q ss_pred             HHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhccccccccc
Q 037778          280 AVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKN  359 (575)
Q Consensus       280 A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n  359 (575)
                      |+.+|....+..|++-|+....   ..|++|+||||+|+..|+...+.++                   ...+++.+..|
T Consensus       185 Aaykg~~~~v~~LL~f~a~~~~---~d~~~g~TpLHwa~~~gN~~~v~Ll-------------------~~g~~~~d~~~  242 (600)
T KOG0509|consen  185 AAYKGFALFVRRLLKFGASLLL---TDDNHGNTPLHWAVVGGNLTAVKLL-------------------LEGGADLDKTN  242 (600)
T ss_pred             HHHhcccHHHHHHHHhcccccc---cccccCCchHHHHHhcCCcceEehh-------------------hhcCCcccccc
Confidence            9999999989999999998875   2459999999999999999988743                   33567889999


Q ss_pred             CCCCChhHHHHHh
Q 037778          360 EDGLSPRALFTRK  372 (575)
Q Consensus       360 ~~G~Tpl~~a~~~  372 (575)
                      .+|+||+++|.+.
T Consensus       243 ~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  243 TNGKTPFDLAQER  255 (600)
T ss_pred             cCCCCHHHHHHHh
Confidence            9999999999775

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.2e-29  Score=262.31  Aligned_cols=275  Identities=11%  Similarity=0.102  Sum_probs=218.0

Q ss_pred             CcccchHHHH-HHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHH-cCCHHHHHHHHHcCCCCC------------
Q 037778            2 IRRRRLKLYR-AALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAA-AKQYGFVKELVQRMEPGD------------   67 (575)
Q Consensus         2 ~~~~~t~L~~-Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~-~g~~~~v~~Ll~~~~~~~------------   67 (575)
                      |-.|..++|+ |...|+.|+|+.|++ +|++++.+ +..|.||||+|+. .|+.|++++|++.  |++            
T Consensus        68 n~~~~~~~~~~~s~n~~lElvk~LI~-~GAdvN~~-~n~~~~~l~ya~~~~~~~eivk~Ll~~--Gad~~~~~~~g~~~~  143 (631)
T PHA02792         68 NINDFDIFEYLCSDNIDIELLKLLIS-KGLEINSI-KNGINIVEKYATTSNPNVDVFKLLLDK--GIPTCSNIQYGYKII  143 (631)
T ss_pred             ccCCccHHHHHHHhcccHHHHHHHHH-cCCCcccc-cCCCCcceeEeecCCCChHHHHHHHHC--CCCcccccccCcchh
Confidence            4456678876 677899999999988 69999998 7779999999966 6999999999999  543            


Q ss_pred             ------------------------ccccccCCChHHHHHHHcC-------CHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           68 ------------------------LAQENNVGYTALFFAAASG-------MVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        68 ------------------------l~~~d~~g~TpLh~Aa~~g-------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                                              ++.+|..|.||||+|+.++       +.|++++|+++|+++ +..|..|.||||+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~  222 (631)
T PHA02792        144 IEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYY  222 (631)
T ss_pred             hhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHH
Confidence                                    3356778999999999999       899999999999997 88999999999999


Q ss_pred             HHcC--ChHHHHHHHhccc--ccc--------------Cc--Cc---------h--------------------------
Q 037778          117 ASLG--HEDMVVYLYGQTK--NSL--------------ND--ED---------R--------------------------  141 (575)
Q Consensus       117 ~~~g--~~~~v~~Ll~~~~--~~~--------------~~--~~---------g--------------------------  141 (575)
                      +.+.  +.|+++.|++..-  ...              .+  -+         |                          
T Consensus       223 ~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~  302 (631)
T PHA02792        223 VDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRY  302 (631)
T ss_pred             HHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHH
Confidence            9999  8899999987532  000              00  00         0                          


Q ss_pred             ----hhHHHHHHHhC--cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHH
Q 037778          142 ----SHLLVTLIQTD--LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKAL  215 (575)
Q Consensus       142 ----~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (575)
                          +-.||.-.+.+  +.++++.|+++  |....  ...+..+++.|+..++                          .
T Consensus       303 ~~~~q~~l~~Yl~~~~v~ieiIK~LId~--Ga~~~--r~~~~n~~~~Aa~~gn--------------------------~  352 (631)
T PHA02792        303 TDSIQDLLSEYVSYHTVYINVIKCMIDE--GATLY--RFKHINKYFQKFDNRD--------------------------P  352 (631)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHC--CCccc--cCCcchHHHHHHHcCC--------------------------H
Confidence                01223333333  44666667766  55432  2235556777777773                          8


Q ss_pred             HHHHHHHHHhhhCChhhhhcccC-CChHHHHHHHcCCHH---HHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHH
Q 037778          216 KLVQRLWEKVVLLSDSRISNLIA-EPELIFDAARQGNLE---FLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKL  291 (575)
Q Consensus       216 e~v~~L~~~~~~~~~~~~~~~~~-~~tpLh~Aa~~g~~~---iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~  291 (575)
                      +++++|+++|++++.++   ..+ +.||||.|+..+..+   +++.++++|+| ++.+|..|+||||+|+..++.+++++
T Consensus       353 eIVelLIs~GADIN~kD---~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivel  428 (631)
T PHA02792        353 KVVEYILKNGNVVVEDD---DNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEW  428 (631)
T ss_pred             HHHHHHHHcCCchhhhc---CCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHH
Confidence            99999999999998776   333 349999988776654   58888999999 89999999999999999999999999


Q ss_pred             HHhcCcchhhhhhcccCCCCcHHHHHhh
Q 037778          292 IYQIGAAKDLILKFEDPKKNNILHLAAM  319 (575)
Q Consensus       292 Ll~~~~~~~~l~~~~d~~G~T~LHlAa~  319 (575)
                      |+++|++++.    +|..|+||||+|+.
T Consensus       429 LLs~GADIN~----kD~~G~TpL~~A~~  452 (631)
T PHA02792        429 LIDNGADINI----TTKYGSTCIGICVI  452 (631)
T ss_pred             HHHCCCCCCC----cCCCCCCHHHHHHH
Confidence            9999999864    99999999999986

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=217.56  Aligned_cols=179  Identities=15%  Similarity=0.179  Sum_probs=138.7

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC--CHHHHHHHHhcCccccccCC-CCCCcHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG--MVELAREIMTHNKAIATEQD-DKRVLPI  113 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~-~~g~tpL  113 (575)
                      ...+.||||.|+..|+.+.|+.|++.     ++.+|..|.||||+|+..+  +.+++++|+++|+++ +.++ ..|.|||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpL   91 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSAL   91 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHH
Confidence            35578899999999999999888875     4567788889999888754  788899999988887 6665 4788888


Q ss_pred             HHHHHc---CChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCC
Q 037778          114 DLAASL---GHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNY  190 (575)
Q Consensus       114 ~~A~~~---g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~  190 (575)
                      |+|+..   ++.+++++|+++                                  +.+++.+|.+|.||||+|+...   
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~----------------------------------gadin~~d~~G~TpLh~a~~~~---  134 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDS----------------------------------GSSITEEDEDGKNLLHMYMCNF---  134 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHC----------------------------------CCCCCCcCCCCCCHHHHHHHhc---
Confidence            887653   356666666654                                  4556677777777777765432   


Q ss_pred             cccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCcccccc
Q 037778          191 SHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNID  270 (575)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d  270 (575)
                                                                                .++.++++.|++.|++ ++.+|
T Consensus       135 ----------------------------------------------------------~~~~~iv~~Li~~gad-in~~d  155 (209)
T PHA02859        135 ----------------------------------------------------------NVRINVIKLLIDSGVS-FLNKD  155 (209)
T ss_pred             ----------------------------------------------------------cCCHHHHHHHHHcCCC-ccccc
Confidence                                                                      2468888888888888 78889


Q ss_pred             CCCCchHHH-HHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCC
Q 037778          271 ENGYTIFHT-AVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLP  321 (575)
Q Consensus       271 ~~G~t~Lh~-A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~  321 (575)
                      .+|+||||. |+..++.+++++|+++|++++.    +|..|.||||+|...+
T Consensus       156 ~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~----~d~~g~tpl~la~~~~  203 (209)
T PHA02859        156 FDNNNILYSYILFHSDKKIFDFLTSLGIDINE----TNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCC----CCCCCCCHHHHHhhhh
Confidence            999999995 4567888999999999988764    8899999999998654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.6e-26  Score=215.48  Aligned_cols=175  Identities=11%  Similarity=0.050  Sum_probs=157.0

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcC--CHHHHHHHHHcCCCCCccccc-cCCChHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAK--QYGFVKELVQRMEPGDLAQEN-NVGYTAL   79 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g--~~~~v~~Ll~~~~~~~l~~~d-~~g~TpL   79 (575)
                      ..+++|||.|+..|+.+.|+.+++.    ++.. |..|.||||+|+..+  +.+++++|+++  |++++.++ ..|.|||
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~-~~~g~TpLh~a~~~~~~~~eiv~~Ll~~--gadvn~~~~~~g~TpL   91 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDC-NDLYETPIFSCLEKDKVNVEILKFLIEN--GADVNFKTRDNNLSAL   91 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhcc-CccCCCHHHHHHHcCCCCHHHHHHHHHC--CCCCCccCCCCCCCHH
Confidence            3568999999999999999999863    4444 889999999999864  89999999999  99999997 4899999


Q ss_pred             HHHHHc---CCHHHHHHHHhcCccccccCCCCCCcHHHHHHH--cCChHHHHHHHhccc-cccCcCchhhHHHH-HHHhC
Q 037778           80 FFAAAS---GMVELAREIMTHNKAIATEQDDKRVLPIDLAAS--LGHEDMVVYLYGQTK-NSLNDEDRSHLLVT-LIQTD  152 (575)
Q Consensus        80 h~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~-a~~~~  152 (575)
                      |+|+..   ++.+++++|+++|+++ +.+|..|.||||+|+.  .++.+++++|++.++ .+..|.+|.||||. +...+
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcC
Confidence            998753   5799999999999997 9999999999999986  468999999999999 78899999999995 56678


Q ss_pred             cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcC
Q 037778          153 LYDVALRVFEDLHEKSAIGRAANEETALHALARKN  187 (575)
Q Consensus       153 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~  187 (575)
                      +.++++.|++.  +.+++.+|..|.||||+|..++
T Consensus       171 ~~~iv~~Ll~~--Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        171 DKKIFDFLTSL--GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999997  8999999999999999999876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=7.5e-24  Score=237.00  Aligned_cols=253  Identities=17%  Similarity=0.124  Sum_probs=179.4

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhC-CCcccccCCCCCChHHh-HHHHcCCHHHHHHHHHcCCCCCccccccCCChHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVH-EGEIRAPISKRKDTALH-IAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF   80 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~-~~~~~~~~~~~g~TpLh-~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh   80 (575)
                      ..+...++.|+++|+.+.++.++++. +.+++.. |..|+|||| .|+..++.++++.|++.  +.    ++..|+||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~--g~----~~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENLELTELLLNL--SC----RGAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChHHHHHHHHhC--CC----CCCcChHHHH
Confidence            45678899999999999999999852 5677776 899999999 99999999999999998  55    6888999999


Q ss_pred             HHHHcC---CHHHHHHHHhcCcc-----cc----ccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCc---------
Q 037778           81 FAAASG---MVELAREIMTHNKA-----IA----TEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLND---------  138 (575)
Q Consensus        81 ~Aa~~g---~~~iv~~Ll~~~~~-----~~----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~---------  138 (575)
                      .|+.++   ..++++.+...+++     ..    ...+..|.||||+|+.+|+.++|++|+++|+ .+..+         
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~  167 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQ  167 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCC
Confidence            998732   22344444444432     00    1233569999999999999999999999998 44321         


Q ss_pred             -----CchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhh-H
Q 037778          139 -----EDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKR-Q  212 (575)
Q Consensus       139 -----~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  212 (575)
                           ..|.+|||.|+..++.++++.|+++  |++++.+|..|+||||+|+..+.                  .+..+ .
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~--gadin~~d~~g~T~Lh~A~~~~~------------------~~~~~~~  227 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSED--PADILTADSLGNTLLHLLVMENE------------------FKAEYEE  227 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcC--CcchhhHhhhhhHHHHHHHhhhh------------------hhHHHHH
Confidence                 2467777777777777777777775  77777777777777777776551                  00000 0


Q ss_pred             HHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCC---ccccccCCCCchHHHHHHcCChhHH
Q 037778          213 KALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPD---LIWNIDENGYTIFHTAVLHRRKRIF  289 (575)
Q Consensus       213 ~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d---~~~~~d~~G~t~Lh~A~~~~~~~iv  289 (575)
                      ...++.+.+                                  ..+++.+.+   ..+..|.+|.||||+|+..|+.+++
T Consensus       228 l~~~~~~~l----------------------------------~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       228 LSCQMYNFA----------------------------------LSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             HHHHHHHHH----------------------------------HHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHH
Confidence            001111222                                  222222222   0145788999999999999999999


Q ss_pred             HHHHhcCcchhhhhhcccCCCCcHHHHHhhC
Q 037778          290 KLIYQIGAAKDLILKFEDPKKNNILHLAAML  320 (575)
Q Consensus       290 ~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~  320 (575)
                      ++|++.+....    .....++.|.|++...
T Consensus       274 ~lLL~~~~~~k----k~~a~~~~~~~~~~~~  300 (743)
T TIGR00870       274 RLKLAIKYKQK----KFVAWPNGQQLLSLYW  300 (743)
T ss_pred             HHHHHHHHhcc----eeeccCcchHhHhhhc
Confidence            99998765533    2466788888887653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=8.8e-25  Score=220.25  Aligned_cols=156  Identities=9%  Similarity=-0.008  Sum_probs=106.8

Q ss_pred             HHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcc------ccccCCChHHHHHHH--cCCHHH
Q 037778           19 AVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLA------QENNVGYTALFFAAA--SGMVEL   90 (575)
Q Consensus        19 ~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~------~~d~~g~TpLh~Aa~--~g~~~i   90 (575)
                      +++...+-.++.+++.. +.+|     +|+..+..|+++.|+++  +++++      .++..++|+||+|+.  .|+.++
T Consensus        62 ~~~~~~~~~~~~~i~~~-~~~~-----~~~~~~~k~~~~~l~s~--~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei  133 (437)
T PHA02795         62 DVLYDYFRIHRDNIDQY-IVDR-----LFAYITYKDIISALVSK--NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI  133 (437)
T ss_pred             HHHHHHHHHcCcchhhh-hhhh-----HHhhcchHHHHHHHHhc--ccccchhhhhhhccccccHHHHHHHHhcCCCHHH
Confidence            34444444467777766 4444     89999999999999998  88877      788889999999998  889999


Q ss_pred             HHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-c-ccC-----cCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778           91 AREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-N-SLN-----DEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus        91 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~-~~~-----~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      |++|+++|+++ +.  .++.||+|.|+..|+.+++++|+++|+ . +..     +..+.+++|.|...+..++++.|+++
T Consensus       134 V~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~  210 (437)
T PHA02795        134 VDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY  210 (437)
T ss_pred             HHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC
Confidence            99999999987 55  345889999999999999999999986 1 111     11233444444444444555444444


Q ss_pred             hhccccccccCCCCcHHHHHHhcC
Q 037778          164 LHEKSAIGRAANEETALHALARKN  187 (575)
Q Consensus       164 ~~~~~~~~~d~~g~tpLh~a~~~~  187 (575)
                        +++++.+|.+|.||||+|+..|
T Consensus       211 --GADIN~kD~~G~TpLh~Aa~~g  232 (437)
T PHA02795        211 --IEDINQLDAGGRTLLYRAIYAG  232 (437)
T ss_pred             --cCCcCcCCCCCCCHHHHHHHcC
Confidence              4444444444444444444444

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=217.47  Aligned_cols=203  Identities=11%  Similarity=0.037  Sum_probs=170.3

Q ss_pred             HHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccc------cCCCCCCcHHHHHHH--cCChHHHHH
Q 037778           56 VKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIAT------EQDDKRVLPIDLAAS--LGHEDMVVY  127 (575)
Q Consensus        56 v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~------~~~~~g~tpL~~A~~--~g~~~~v~~  127 (575)
                      -++++.+  |.+++.++.+|     +|+..+..|++++|+++|+++ +      .++..++|+||+++.  .|+.++|++
T Consensus        65 ~~~~~~~--~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~  136 (437)
T PHA02795         65 YDYFRIH--RDNIDQYIVDR-----LFAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDF  136 (437)
T ss_pred             HHHHHHc--Ccchhhhhhhh-----HHhhcchHHHHHHHHhccccc-chhhhhhhccccccHHHHHHHHhcCCCHHHHHH
Confidence            4677778  88999888888     999999999999999999996 5      678889999999999  899999999


Q ss_pred             HHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhcccc-ccc-----cCCCCcHHHHHHhcCCCCcccchhhhhh
Q 037778          128 LYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSA-IGR-----AANEETALHALARKNLNYSHFTKQYQRG  200 (575)
Q Consensus       128 Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~-~~~-----d~~g~tpLh~a~~~~~~~~~~~~~~~~~  200 (575)
                      |+++|+ .+.  .++.||+|.|+..++.+++++|+++  |... +..     +..|.|++|.|+..+             
T Consensus       137 LI~~GADIn~--~~~~t~lh~A~~~~~~eIVk~Lls~--Ga~~~n~~~~~l~~~~~~t~l~~a~~~~-------------  199 (437)
T PHA02795        137 MVDHGAVIYK--IECLNAYFRGICKKESSVVEFILNC--GIPDENDVKLDLYKIIQYTRGFLVDEPT-------------  199 (437)
T ss_pred             HHHCCCCCCC--CCCCCHHHHHHHcCcHHHHHHHHhc--CCcccccccchhhhhhccchhHHHHhcC-------------
Confidence            999999 444  4558999999999999999999998  5432 222     134778888888777             


Q ss_pred             hccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHH
Q 037778          201 FFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTA  280 (575)
Q Consensus       201 ~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A  280 (575)
                                   ..|++++|++.|++++..+    ..|.||||.|+..|+.++++.|+++|++ ++.+|..|+||||+|
T Consensus       200 -------------~~eIve~LIs~GADIN~kD----~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~A  261 (437)
T PHA02795        200 -------------VLEIYKLCIPYIEDINQLD----AGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVA  261 (437)
T ss_pred             -------------HHHHHHHHHhCcCCcCcCC----CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence                         4789999999998888766    4455999999999999999999999998 788899999999999


Q ss_pred             HHcCC--------hhHHHHHHhcCcchhh
Q 037778          281 VLHRR--------KRIFKLIYQIGAAKDL  301 (575)
Q Consensus       281 ~~~~~--------~~iv~~Ll~~~~~~~~  301 (575)
                      +.+|+        .+++++|+++|++++.
T Consensus       262 a~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        262 VDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            98874        5899999998887654

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=8.2e-25  Score=182.89  Aligned_cols=109  Identities=46%  Similarity=0.730  Sum_probs=97.9

Q ss_pred             hHHHHHhhhHHHHHHHHHHHHHhhhhhccCCCCCCC---CCcccccccc-chHHHHHHHHHHHHHHhHHHHHHHHhhccc
Q 037778          381 EKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGD---TGFPFFLEKV-SFKIFAISEAISLVSSSASIVNFLSILTSR  456 (575)
Q Consensus       381 ~~~~~~~~~s~~vva~Liatv~faa~~t~Pgg~~~~---~G~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~~~~  456 (575)
                      +||++++++++++||+|||||||||+||||||++||   .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            489999999999999999999999999999999775   6999998887 999999999999999999998877422   


Q ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhe
Q 037778          457 YTEKDFLRLLPKKLLIGLATLFVSIAAMMVVFSAAFFIV  495 (575)
Q Consensus       457 ~~~~~~~~~~~~~l~~~~~~l~~s~~~m~~af~~~~~~v  495 (575)
                         +++.+..+..+.++..++++++.+|++||++|+++|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               455666677788999999999999999999999976

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=7.4e-25  Score=192.17  Aligned_cols=265  Identities=18%  Similarity=0.160  Sum_probs=180.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHc
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS   85 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~   85 (575)
                      -..++.+...|-.+.-..+..+...    ..+..|+.-+-.|.+.|+.+++...+... +..+...+.+|..++|.|+-+
T Consensus        32 ~a~~~~~~~m~~t~p~~~l~~~~s~----~~~~lge~~~~~~~~s~nsd~~v~s~~~~-~~~~~~t~p~g~~~~~v~ap~  106 (296)
T KOG0502|consen   32 IAELFEQVEMGTTEPRCALTAEISA----LRNALGESLLTVAVRSGNSDVAVQSAQLD-PDAIDETDPEGWSALLVAAPC  106 (296)
T ss_pred             HHHHHHHhhccccchhHHHHHHHHH----HHHhcCCcccchhhhcCCcHHHHHhhccC-CCCCCCCCchhhhhhhhcCCC
Confidence            3445555555554444444332211    12444555666666666666666655543 333444555566666666666


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhh
Q 037778           86 GMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLH  165 (575)
Q Consensus        86 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  165 (575)
                      |+...+..++..+... +..+--+.+|+.+++..-+.+.+..+.++. .+..|+.|.|||..|+..|+.+++++||+.  
T Consensus       107 ~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~~~~~n~-VN~~De~GfTpLiWAaa~G~i~vV~fLL~~--  182 (296)
T KOG0502|consen  107 GSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVDLLVNNK-VNACDEFGFTPLIWAAAKGHIPVVQFLLNS--  182 (296)
T ss_pred             CCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHHHHhhcc-ccCccccCchHhHHHHhcCchHHHHHHHHc--
Confidence            6666666666666554 555666666666666666666555544432 355666666666666666666666666665  


Q ss_pred             ccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHH
Q 037778          166 EKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFD  245 (575)
Q Consensus       166 ~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~  245 (575)
                      ++++....+...++|.+|++.|                          ..++++.|++++.++|.-+   -+|+ |||.+
T Consensus       183 GAdp~~lgk~resALsLAt~gg--------------------------ytdiV~lLL~r~vdVNvyD---wNGg-TpLly  232 (296)
T KOG0502|consen  183 GADPDALGKYRESALSLATRGG--------------------------YTDIVELLLTREVDVNVYD---WNGG-TPLLY  232 (296)
T ss_pred             CCChhhhhhhhhhhHhHHhcCC--------------------------hHHHHHHHHhcCCCcceec---cCCC-ceeee
Confidence            6666677777778888887777                          4778888888888777655   3444 88888


Q ss_pred             HHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHH
Q 037778          246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILH  315 (575)
Q Consensus       246 Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LH  315 (575)
                      |++.|+.++++.|++.|+| ++..|..|++++..|+..|+. +++.++++.+++..    +|+.-.||+|
T Consensus       233 Avrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~----Q~~~~~~~~~  296 (296)
T KOG0502|consen  233 AVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLC----QDSEKRTPLH  296 (296)
T ss_pred             eecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHh----hcccCCCCCC
Confidence            8899999999999999999 889999999999999999987 88999988777754    8988889887

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=3.5e-24  Score=219.01  Aligned_cols=242  Identities=18%  Similarity=0.185  Sum_probs=208.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCC------------CcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcccccc
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHE------------GEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENN   73 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~------------~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~   73 (575)
                      .+-|..|++.|+.+.+..+|+..+            ...+.+ |.+|.|+||.|+.+|+.++++.|+++  ...++..|.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q-d~~gfTalhha~Lng~~~is~llle~--ea~ldl~d~   80 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ-DYSGFTLLHHAVLNGQNQISKLLLDY--EALLDLCDT   80 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc-CccchhHHHHHHhcCchHHHHHHhcc--hhhhhhhhc
Confidence            456889999999999999998532            345555 88999999999999999999999999  788999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhC
Q 037778           74 VGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTD  152 (575)
Q Consensus        74 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~  152 (575)
                      .|.+|||+|+.+|+.|+++.++..+.. .+..+..|.||||.|++.||.+++.+|+++++ ....+..+.|+|..|++-|
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhh
Confidence            999999999999999999999999855 49999999999999999999999999999999 7789999999999999999


Q ss_pred             cHHHHHHHHHhhhcc------ccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhh
Q 037778          153 LYDVALRVFEDLHEK------SAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVV  226 (575)
Q Consensus       153 ~~~~~~~Ll~~~~~~------~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~  226 (575)
                      ..++++.|++...+.      .-..++-.+-+|||.|++.|+                          .++++.|++.|.
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh--------------------------~~~~~~ll~ag~  213 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH--------------------------VECMQALLEAGF  213 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch--------------------------HHHHHHHHhcCC
Confidence            999999998762000      012345567889999999884                          788999999999


Q ss_pred             hCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHc
Q 037778          227 LLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLH  283 (575)
Q Consensus       227 ~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~  283 (575)
                      ++|..+    ..| |+||.|+..|..++|+.|++.|.+ ...+|.+|+|+|.+-...
T Consensus       214 din~~t----~~g-talheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  214 DINYTT----EDG-TALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIIDL  264 (854)
T ss_pred             Cccccc----ccc-hhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHHHhc
Confidence            888766    233 999999999999999999999888 788899999998876543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.90  E-value=1.4e-24  Score=227.53  Aligned_cols=291  Identities=16%  Similarity=0.169  Sum_probs=246.4

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      .+.|.+||..|+-.||..+|+.++. +.++++.+.|..++|+|.+||..|+.++|++||..  +++-..+|....|||.+
T Consensus       787 dkkgf~plImaatagh~tvV~~llk-~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~--gankehrnvsDytPlsl  863 (2131)
T KOG4369|consen  787 DKKGFVPLIMAATAGHITVVQDLLK-AHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA--GANKEHRNVSDYTPLSL  863 (2131)
T ss_pred             ccccchhhhhhcccCchHHHHHHHh-hhhhhhhhcccccCceEEEecCCCcchHHHHHHHh--hccccccchhhcCchhh
Confidence            3567788888888888888887777 46777777788888888888888888888888888  78888888888888888


Q ss_pred             HHHcCCHHHHHHHHhcCccccc-cCCCCCCcHHHHHHHcCChHHHHHHHhccc-ccc-CcCchhhHHHHHHHhCcHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIAT-EQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSL-NDEDRSHLLVTLIQTDLYDVAL  158 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~-~~~~g~t~L~~a~~~~~~~~~~  158 (575)
                      |...|..+++..|+..|.++.. .-.+.|-+||++|..+||.+.++.|++.+. .+. ...+.+|+|-.|+..|..+++.
T Consensus       864 a~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~  943 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVF  943 (2131)
T ss_pred             hcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHH
Confidence            8888888888888888877622 223467889999999999999999988887 333 4567788888999999999999


Q ss_pred             HHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccC
Q 037778          159 RVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIA  238 (575)
Q Consensus       159 ~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~  238 (575)
                      .||..  .+....+-+.|.|||.-++..|                          ..|+=+.|+..|+|.+..-.  ...
T Consensus       944 lLLa~--~anvehRaktgltplme~AsgG--------------------------yvdvg~~li~~gad~nasPv--p~T  993 (2131)
T KOG4369|consen  944 LLLAA--QANVEHRAKTGLTPLMEMASGG--------------------------YVDVGNLLIAAGADTNASPV--PNT  993 (2131)
T ss_pred             HHHHH--hhhhhhhcccCCcccchhhcCC--------------------------ccccchhhhhcccccccCCC--CCc
Confidence            99887  7788888889999999999888                          47888899999999987652  223


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHh
Q 037778          239 EPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA  318 (575)
Q Consensus       239 ~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa  318 (575)
                      ..|+|-+++..||..+++.|++..+. +..++++|+|+|-+|+..|+...+.+|++++++.+.    +|+.-++++.-|.
T Consensus       994 ~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~----qdnr~~S~~maaf 1068 (2131)
T KOG4369|consen  994 WDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQ----QDNRTNSRTMAAF 1068 (2131)
T ss_pred             CCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhcccChhh----hhcccccccHHHH
Confidence            34999999999999999999998888 889999999999999999999999999999999975    8999999999999


Q ss_pred             hCCCCCcccccc
Q 037778          319 MLPPQDRLNIVS  330 (575)
Q Consensus       319 ~~~~~~~~~~l~  330 (575)
                      +.|+.++|.+..
T Consensus      1069 RKgh~~iVk~mv 1080 (2131)
T KOG4369|consen 1069 RKGHFAIVKKMV 1080 (2131)
T ss_pred             Hhchhheecccc
Confidence            999999887653

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=2.4e-24  Score=188.95  Aligned_cols=243  Identities=19%  Similarity=0.062  Sum_probs=211.9

Q ss_pred             CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHH
Q 037778           38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA  117 (575)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  117 (575)
                      +..-..+..++..|-.+--..|....    -..++..|+.-+-.+.+.|+.+++..+...+++-+...+.+|.+.++.++
T Consensus        29 s~q~a~~~~~~~m~~t~p~~~l~~~~----s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~a  104 (296)
T KOG0502|consen   29 STQIAELFEQVEMGTTEPRCALTAEI----SALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAA  104 (296)
T ss_pred             hHHHHHHHHHhhccccchhHHHHHHH----HHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcC
Confidence            33456677777777777666666542    22346677778888999999999999999888877788889999999999


Q ss_pred             HcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh
Q 037778          118 SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ  196 (575)
Q Consensus       118 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~  196 (575)
                      -.|+.+.+..++.++. .+..+..+++|+..++...+.++...+.+    ..++..|+.|.|||.+|+.+|+        
T Consensus       105 p~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~----n~VN~~De~GfTpLiWAaa~G~--------  172 (296)
T KOG0502|consen  105 PCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN----NKVNACDEFGFTPLIWAAAKGH--------  172 (296)
T ss_pred             CCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh----ccccCccccCchHhHHHHhcCc--------
Confidence            9999999999999998 88889999999999999888888776664    4678899999999999999995        


Q ss_pred             hhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCch
Q 037778          197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI  276 (575)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~  276 (575)
                                        ++++++|++.|++++...   . +..++|.+|.+.|..++|+.|+++++| +|..|-+|-||
T Consensus       173 ------------------i~vV~fLL~~GAdp~~lg---k-~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTp  229 (296)
T KOG0502|consen  173 ------------------IPVVQFLLNSGADPDALG---K-YRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTP  229 (296)
T ss_pred             ------------------hHHHHHHHHcCCChhhhh---h-hhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCce
Confidence                              899999999999998765   2 233999999999999999999999999 89999999999


Q ss_pred             HHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCC
Q 037778          277 FHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQ  323 (575)
Q Consensus       277 Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~  323 (575)
                      |-+|++.++.++++.|++.|++++.    .|..|++++.+|+..|..
T Consensus       230 LlyAvrgnhvkcve~Ll~sGAd~t~----e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  230 LLYAVRGNHVKCVESLLNSGADVTQ----EDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             eeeeecCChHHHHHHHHhcCCCccc----ccccCCcHHHHHHHhhhH
Confidence            9999999999999999999999864    899999999999999974

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=5.1e-23  Score=231.51  Aligned_cols=177  Identities=19%  Similarity=0.226  Sum_probs=131.4

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      +.++.++||.||..|+.++++.|++.  |.+++.+|.+|+||||+|+..|+.++++.|+++|+++ +.+|.+|.||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHH
Confidence            44556777777777777777777776  6777777777777777777777777777777777775 66777777777777


Q ss_pred             HHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh
Q 037778          117 ASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ  196 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~  196 (575)
                      +..|+.+++++|++.++                                                               
T Consensus       599 ~~~g~~~iv~~L~~~~~---------------------------------------------------------------  615 (823)
T PLN03192        599 ISAKHHKIFRILYHFAS---------------------------------------------------------------  615 (823)
T ss_pred             HHhCCHHHHHHHHhcCc---------------------------------------------------------------
Confidence            77777777777765432                                                               


Q ss_pred             hhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCch
Q 037778          197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI  276 (575)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~  276 (575)
                                                    ..+      ...+.++||.|+..|+.++++.|+++|+| ++.+|.+|+||
T Consensus       616 ------------------------------~~~------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~Tp  658 (823)
T PLN03192        616 ------------------------------ISD------PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATA  658 (823)
T ss_pred             ------------------------------ccC------cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence                                          000      01122788888888888888888888888 78888888899


Q ss_pred             HHHHHHcCChhHHHHHHhcCcchhhhhhcccCCC-CcHHHHHhhC
Q 037778          277 FHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKK-NNILHLAAML  320 (575)
Q Consensus       277 Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G-~T~LHlAa~~  320 (575)
                      ||+|+.+|+.+++++|+++|++++.    +|..| .||++++...
T Consensus       659 Lh~A~~~g~~~iv~~Ll~~GAdv~~----~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        659 LQVAMAEDHVDMVRLLIMNGADVDK----ANTDDDFSPTELRELL  699 (823)
T ss_pred             HHHHHHCCcHHHHHHHHHcCCCCCC----CCCCCCCCHHHHHHHH
Confidence            9998888888888988888888764    77777 8888887653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=1.9e-23  Score=233.80  Aligned_cols=238  Identities=16%  Similarity=0.113  Sum_probs=168.6

Q ss_pred             CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHH-HHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF-FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh-~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      ..++.+++.|++.|+.+.|+.+++...+.++|..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            3568999999999999999999987546788999999999999 8889999999999999876     567899999999


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK  195 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~  195 (575)
                      +.. ..+.++.++.... ....   +..+              .+.    .+.....+..|.||||+|+..++       
T Consensus        90 ~~~-~~~~v~~ll~~l~~~~~~---~~~~--------------~~~----~~~~~~~~~~G~TpLhlAa~~~~-------  140 (743)
T TIGR00870        90 SLE-YVDAVEAILLHLLAAFRK---SGPL--------------ELA----NDQYTSEFTPGITALHLAAHRQN-------  140 (743)
T ss_pred             Hhc-cHHHHHHHHHHHhhcccc---cCch--------------hhh----ccccccccCCCCcHHHHHHHhCC-------
Confidence            873 3343443333221 0000   0000              000    00011223456666666666663       


Q ss_pred             hhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhh----------hcccCCChHHHHHHHcCCHHHHHHHHHHCCCc
Q 037778          196 QYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRI----------SNLIAEPELIFDAARQGNLEFLLILIREYPDL  265 (575)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~----------~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~  265 (575)
                                         .++++.|+++|++++....          .....+.+|||.|+..|+.++++.|+++++| 
T Consensus       141 -------------------~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-  200 (743)
T TIGR00870       141 -------------------YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-  200 (743)
T ss_pred             -------------------HHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-
Confidence                               5666666666666653210          0011245999999999999999999999998 


Q ss_pred             cccccCCCCchHHHHHHcC---------ChhHHHHHHhcCcch---hhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          266 IWNIDENGYTIFHTAVLHR---------RKRIFKLIYQIGAAK---DLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       266 ~~~~d~~G~t~Lh~A~~~~---------~~~iv~~Ll~~~~~~---~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      ++..|+.|+||||+|+.++         ...+.+++++.++..   ..+.+.+|.+|+||||+|+..|+.+.++.+
T Consensus       201 in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence            8999999999999999986         234556666655443   222245899999999999999998887766

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.6e-23  Score=214.11  Aligned_cols=246  Identities=22%  Similarity=0.272  Sum_probs=213.1

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCC-----------CCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRME-----------PGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRV  110 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~-----------~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~  110 (575)
                      +=|--|++.|+.+.+..||+...           ....+.+|.+|.|+||.|+.+|+.+++++|++..+-+ ...+..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCc
Confidence            45778999999999999998752           1347888999999999999999999999999999886 88889999


Q ss_pred             cHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCC
Q 037778          111 LPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLN  189 (575)
Q Consensus       111 tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~  189 (575)
                      +|||+|+..|+.|+++.++..+. .+.....|.+|||.++..++.|++.+||++  +.+.-.+|+++.|+|.+|++.|  
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~--~adp~i~nns~~t~ldlA~qfg--  159 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKK--NADPFIRNNSKETVLDLASRFG--  159 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhc--CCCccccCcccccHHHHHHHhh--
Confidence            99999999999999999999998 888999999999999999999999999997  9999999999999999999999  


Q ss_pred             CcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh----hhcccCCChHHHHHHHcCCHHHHHHHHHHCCCc
Q 037778          190 YSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR----ISNLIAEPELIFDAARQGNLEFLLILIREYPDL  265 (575)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~----~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~  265 (575)
                                              ..++++.|++........+    ........+|+|.|+++|+.++++.|++.|-| 
T Consensus       160 ------------------------r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-  214 (854)
T KOG0507|consen  160 ------------------------RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-  214 (854)
T ss_pred             ------------------------hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-
Confidence                                    4778888877632222111    01112233899999999999999999999999 


Q ss_pred             cccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCC
Q 037778          266 IWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPP  322 (575)
Q Consensus       266 ~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~  322 (575)
                      ++....+| |+||.|+..|..+++.+|++.|.+..+    +|.+|.|+|.+..+...
T Consensus       215 in~~t~~g-talheaalcgk~evvr~ll~~gin~h~----~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  215 INYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHI----KNQHGQTALDIIIDLQE  266 (854)
T ss_pred             cccccccc-hhhhhHhhcCcchhhhHHHhhcccccc----ccccchHHHHHHHhcch
Confidence            67665554 899999999999999999999998865    99999999998877544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-23  Score=218.93  Aligned_cols=303  Identities=15%  Similarity=0.110  Sum_probs=255.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccc-cccCCChHHHHHHH
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQ-ENNVGYTALFFAAA   84 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~-~d~~g~TpLh~Aa~   84 (575)
                      .|+|-.|+..|+.|++..++.+ ++++..+ |+.|.+||.+|+-.||..+|+.|+.+  .++++. .|..++|+|.+||.
T Consensus       758 ~t~LT~acaggh~e~vellv~r-ganiehr-dkkgf~plImaatagh~tvV~~llk~--ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVR-GANIEHR-DKKGFVPLIMAATAGHITVVQDLLKA--HADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             cccccccccCccHHHHHHHHHh-ccccccc-ccccchhhhhhcccCchHHHHHHHhh--hhhhhhhcccccCceEEEecC
Confidence            5789999999999999988874 8888888 99999999999999999999999998  788776 46779999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-c--ccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           85 SGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-N--SLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~--~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      .|+.++|+.|+..|++- ..+|....|||-+|..-|..++++.|+..|. .  .....-|..||.+|..+|+.+.++.||
T Consensus       834 ggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            99999999999999985 7888899999999999999999999999997 2  335577889999999999999999999


Q ss_pred             Hhhhccccccc-cCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCC
Q 037778          162 EDLHEKSAIGR-AANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEP  240 (575)
Q Consensus       162 ~~~~~~~~~~~-d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~  240 (575)
                      +.  +.+++.. ..+.+|+|-+|+-.|                          ..|++..|+...+++....    ..|.
T Consensus       913 ~~--gsdiNaqIeTNrnTaltla~fqg--------------------------r~evv~lLLa~~anvehRa----ktgl  960 (2131)
T KOG4369|consen  913 QP--GSDINAQIETNRNTALTLALFQG--------------------------RPEVVFLLLAAQANVEHRA----KTGL  960 (2131)
T ss_pred             cc--cchhccccccccccceeeccccC--------------------------cchHHHHHHHHhhhhhhhc----ccCC
Confidence            97  6666654 557889999999888                          4789999998877766544    4556


Q ss_pred             hHHHHHHHcCCHHHHHHHHHHCCCcccc--ccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHh
Q 037778          241 ELIFDAARQGNLEFLLILIREYPDLIWN--IDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA  318 (575)
Q Consensus       241 tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~--~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa  318 (575)
                      |||+.+|..|.+|+=+.|+..|+| .+.  +-....|+|-+++..||.+.+..|+...+..++    +|++|+|+|-+|+
T Consensus       961 tplme~AsgGyvdvg~~li~~gad-~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v----~NkkG~T~Lwla~ 1035 (2131)
T KOG4369|consen  961 TPLMEMASGGYVDVGNLLIAAGAD-TNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRV----PNKKGCTVLWLAS 1035 (2131)
T ss_pred             cccchhhcCCccccchhhhhcccc-cccCCCCCcCCccceeecCCCchhhhHHhhCCccceec----ccCCCCcccchhc
Confidence            999999999999999999999999 443  234567999999999999999999998887766    9999999999999


Q ss_pred             hCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHH
Q 037778          319 MLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALF  369 (575)
Q Consensus       319 ~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a  369 (575)
                      ..|....+.++                   ....++.+..|+...|++.-+
T Consensus      1036 ~Gg~lss~~il-------------------~~~~ad~d~qdnr~~S~~maa 1067 (2131)
T KOG4369|consen 1036 AGGALSSCPIL-------------------VSSVADADQQDNRTNSRTMAA 1067 (2131)
T ss_pred             cCCccccchHH-------------------hhcccChhhhhcccccccHHH
Confidence            99987766665                   335555666666555555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=3.3e-22  Score=225.01  Aligned_cols=173  Identities=16%  Similarity=0.080  Sum_probs=159.6

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .+.++||.||..|+.+.++.+++ .+.+++.. |.+|+||||+|+..|+.++++.|+++  |++++.+|.+|+||||+|+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~--gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLK-AKLDPDIG-DSKGRTPLHIAASKGYEDCVLVLLKH--ACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcChHHHHHHHHhc--CCCCCCcCCCCCCHHHHHH
Confidence            34689999999999999999987 58999987 99999999999999999999999998  9999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFE  162 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  162 (575)
                      ..|+.++++.|++.++..   ....|.+|||.|+.+|+.++++.|+++++ .+..|.+|.||||.|+..|+.++++.|++
T Consensus       600 ~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        600 SAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            999999999999877653   23457799999999999999999999999 88899999999999999999999999999


Q ss_pred             hhhccccccccCCC-CcHHHHHHh
Q 037778          163 DLHEKSAIGRAANE-ETALHALAR  185 (575)
Q Consensus       163 ~~~~~~~~~~d~~g-~tpLh~a~~  185 (575)
                      +  +++++..|.+| .||++.+..
T Consensus       677 ~--GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        677 N--GADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             c--CCCCCCCCCCCCCCHHHHHHH
Confidence            7  99999999888 999887754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=5.7e-21  Score=189.49  Aligned_cols=230  Identities=21%  Similarity=0.244  Sum_probs=149.8

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCH
Q 037778            9 LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMV   88 (575)
Q Consensus         9 L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~   88 (575)
                      +..|+..|+.+.+..+|.. +...+.. +.+|.|+||-++...+.++|++|+++  ++++|..|.+|+||||.|+..|+.
T Consensus        44 ~l~A~~~~d~~ev~~ll~~-ga~~~~~-n~DglTalhq~~id~~~e~v~~l~e~--ga~Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNR-GASPNLC-NVDGLTALHQACIDDNLEMVKFLVEN--GANVNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHhccccccHHHHHHHhcc-CCCcccc-CCccchhHHHHHhcccHHHHHHHHHh--cCCccccccccCCcchhhcccccH
Confidence            4556666666666666663 4555554 66666666666666666666666666  666666666666666666666666


Q ss_pred             HHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccc
Q 037778           89 ELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKS  168 (575)
Q Consensus        89 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~  168 (575)
                      .++++|++.|+++ ...|..|..|+..+..-...++..                                .....     
T Consensus       120 ~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~--------------------------------~~~~r-----  161 (527)
T KOG0505|consen  120 NIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLE--------------------------------TEMAR-----  161 (527)
T ss_pred             HHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHH--------------------------------HHHHH-----
Confidence            6666666666665 555666666665553222222211                                11111     


Q ss_pred             cccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHH
Q 037778          169 AIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAAR  248 (575)
Q Consensus       169 ~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~  248 (575)
                            .|.+ +. +++..                      -....++-+...+..|...+...   .. |.|.||+|+.
T Consensus       162 ------~gi~-ie-a~R~~----------------------~e~~ml~D~~q~l~~G~~~d~~~---~r-G~T~lHvAaa  207 (527)
T KOG0505|consen  162 ------QGID-IE-AARKA----------------------EEQTMLDDARQWLNAGAELDARH---AR-GATALHVAAA  207 (527)
T ss_pred             ------hccc-HH-HHhhh----------------------hHHHHHHHHHHHHhccccccccc---cc-cchHHHHHHh
Confidence                  1111 11 11110                      00011222233333555555544   33 4599999999


Q ss_pred             cCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhh
Q 037778          249 QGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAM  319 (575)
Q Consensus       249 ~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~  319 (575)
                      +|..++.+.|++.+.+ ++.+|.+|+||||.|+.-|+.+++++|+++|++.+.    +...|.||+.+|..
T Consensus       208 ~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~----~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  208 NGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA----KTKMGETPLDVADE  273 (527)
T ss_pred             hhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHHhhcccch----hhhcCCCCccchhh
Confidence            9999999999999999 889999999999999999999999999999999875    78899999998865

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=1.2e-20  Score=187.07  Aligned_cols=205  Identities=18%  Similarity=0.142  Sum_probs=147.2

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      |-+|.|+||.++...+.++|+.+++ .+++++.. |.+|+||||.|+-.||.+++++|+++  |+++...|.+|+.|+-+
T Consensus        70 n~DglTalhq~~id~~~e~v~~l~e-~ga~Vn~~-d~e~wtPlhaaascg~~~i~~~li~~--gA~~~avNsdg~~P~dl  145 (527)
T KOG0505|consen   70 NVDGLTALHQACIDDNLEMVKFLVE-NGANVNAQ-DNEGWTPLHAAASCGYLNIVEYLIQH--GANLLAVNSDGNMPYDL  145 (527)
T ss_pred             CCccchhHHHHHhcccHHHHHHHHH-hcCCcccc-ccccCCcchhhcccccHHHHHHHHHh--hhhhhhccCCCCCcccc
Confidence            5689999999999999999999988 69999998 99999999999999999999999999  99999999999999998


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      +......++...-+..          .|.+ +..+-......|.                             +-+...+
T Consensus       146 ~e~ea~~~~l~~~~~r----------~gi~-iea~R~~~e~~ml-----------------------------~D~~q~l  185 (527)
T KOG0505|consen  146 AEDEATLDVLETEMAR----------QGID-IEAARKAEEQTML-----------------------------DDARQWL  185 (527)
T ss_pred             ccCcchhHHHHHHHHH----------hccc-HHHHhhhhHHHHH-----------------------------HHHHHHH
Confidence            8655444444333222          1222 1111111111111                             1111122


Q ss_pred             HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778          162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE  241 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t  241 (575)
                      ..  +...+.++..|-|.||.|+..|                          ..++.++|++.|.+++.++    ..|++
T Consensus       186 ~~--G~~~d~~~~rG~T~lHvAaa~G--------------------------y~e~~~lLl~ag~~~~~~D----~dgWt  233 (527)
T KOG0505|consen  186 NA--GAELDARHARGATALHVAAANG--------------------------YTEVAALLLQAGYSVNIKD----YDGWT  233 (527)
T ss_pred             hc--cccccccccccchHHHHHHhhh--------------------------HHHHHHHHHHhccCccccc----ccCCC
Confidence            22  4444555555777777777777                          4677777777777776665    34447


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHc
Q 037778          242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLH  283 (575)
Q Consensus       242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~  283 (575)
                      |||.|+..|..+++++|++++++ .+.....|.||+.+|...
T Consensus       234 PlHAAA~Wg~~~~~elL~~~ga~-~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  234 PLHAAAHWGQEDACELLVEHGAD-MDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cccHHHHhhhHhHHHHHHHhhcc-cchhhhcCCCCccchhhh
Confidence            77777788888888888888888 778888888888888653

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=2.5e-20  Score=169.21  Aligned_cols=126  Identities=15%  Similarity=0.178  Sum_probs=76.6

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcC----CCCCccccccCCChHHHHHHHcCC----HHHHHHHHhcCccccccCCC-
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRM----EPGDLAQENNVGYTALFFAAASGM----VELAREIMTHNKAIATEQDD-  107 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~----~~~~l~~~d~~g~TpLh~Aa~~g~----~~iv~~Ll~~~~~~~~~~~~-  107 (575)
                      |..|.||||+|++.|+.++++.|+...    .+.+++.+|..|+||||+|+..|+    .+++++|++.|+++ +.++. 
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~   96 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEML   96 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcC
Confidence            556666666666666666666654321    134566666666666666666665    35666666666664 55553 


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhc-cc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          108 KRVLPIDLAASLGHEDMVVYLYGQ-TK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       108 ~g~tpL~~A~~~g~~~~v~~Ll~~-~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      .|.||||+|+..++.+++++|++. +. .+..+.+|.||||.|+..++.++++.|++.
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            566666666666666666666653 44 455566666666666666666666666654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.83  E-value=3.3e-19  Score=185.41  Aligned_cols=287  Identities=18%  Similarity=0.200  Sum_probs=183.7

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCC-------CCCccccccCCChHHHHHHH---cCCHHHHHHHHhcCcccccc----CCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRME-------PGDLAQENNVGYTALFFAAA---SGMVELAREIMTHNKAIATE----QDD  107 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~-------~~~l~~~d~~g~TpLh~Aa~---~g~~~iv~~Ll~~~~~~~~~----~~~  107 (575)
                      .++..|...|..+....++....       ..+++.+...|+|.||.|..   .++.++++.|++..|++.+.    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            66777777777777777665520       13466667778888888875   34568888888887765432    334


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc
Q 037778          108 KRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK  186 (575)
Q Consensus       108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~  186 (575)
                      .|+||||+|+.+.+.++|++|++.|+ ++.+           +               +|.-....|..+..      +.
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR-----------a---------------~G~FF~~~dqk~~r------k~  230 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHAR-----------A---------------CGAFFCPDDQKASR------KS  230 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhH-----------h---------------hccccCcccccccc------cc
Confidence            68888888888888888888888777 2110           0               12222122221111      00


Q ss_pred             CCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCcc
Q 037778          187 NLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLI  266 (575)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~  266 (575)
                      -                                       +...    .-+-|..||..||..++.|+++.|+++++| +
T Consensus       231 T---------------------------------------~Y~G----~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~  266 (782)
T KOG3676|consen  231 T---------------------------------------NYTG----YFYFGEYPLSFAACTNQPEIVRLLLAHGAD-P  266 (782)
T ss_pred             c---------------------------------------CCcc----eeeeccCchHHHHHcCCHHHHHHHHhcCCC-C
Confidence            0                                       0000    011123999999999999999999999999 8


Q ss_pred             ccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHH-HHH
Q 037778          267 WNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLW-FEE  345 (575)
Q Consensus       267 ~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w-~~~  345 (575)
                      +.+|++|+|+||+.+.+-..+++++++++|++  .+...+|++|-|||-+||+.|..++.+.+    ++..+...| +.-
T Consensus       267 ~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~emf~~i----le~~k~~~W~YGp  340 (782)
T KOG3676|consen  267 NAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEMFQHI----LERRKFTDWAYGP  340 (782)
T ss_pred             CccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHHHhhhHHHHHHH----HHhhcccceeecc
Confidence            99999999999999999999999999999998  11234999999999999999998876554    222222333 222


Q ss_pred             HHHhhcc-cccccccCCCCChhHHHH----HhhHHHHHH------hhHHHHHhhhHH--HHHHHHHHHHHhhhhhccCC
Q 037778          346 VEKAVQR-RSAEAKNEDGLSPRALFT----RKHENLREQ------GEKWMKDTATSC--MLVATLIATVVFAAAFTVPG  411 (575)
Q Consensus       346 v~~~~~~-~~~~~~n~~G~Tpl~~a~----~~~~~l~~~------~~~~~~~~~~s~--~vva~Liatv~faa~~t~Pg  411 (575)
                      +.....| ..++..+ +..+.|++..    .+|.++..+      ..||-+-....+  .++.-++.-+.|+.++....
T Consensus       341 vtsslYpL~~iDT~~-n~~SvLeivvyg~~~eHl~Ll~~~i~~LL~~KW~~f~k~~f~~~~~~~~~y~i~ft~~~y~RP  418 (782)
T KOG3676|consen  341 VTSSLYPLNSIDTIG-NENSVLEIVVYGIKNEHLELLDGPIEELLEDKWKAFGKKQFFMSLLIYLLYMICFTLAFYYRP  418 (782)
T ss_pred             cccccccchhccccc-chhhhhhhhhcCCcHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            2222211 2233333 3445666552    345544432      357876655543  34455556666666665543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=1.5e-19  Score=163.36  Aligned_cols=127  Identities=15%  Similarity=0.121  Sum_probs=90.2

Q ss_pred             cccchHHHHHHHcCCHHHHHHH---HhhCCCcccccCCCCCChHHhHHHHcCCHHH---HHHHHHcCCCCCccccc-cCC
Q 037778            3 RRRRLKLYRAALTGDWAVARGI---YDVHEGEIRAPISKRKDTALHIAAAAKQYGF---VKELVQRMEPGDLAQEN-NVG   75 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~l---L~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~---v~~Ll~~~~~~~l~~~d-~~g   75 (575)
                      ..+.++||.|++.|+.+.++++   +.+.+..++.. |.+|+||||+|+..|+.+.   +++|++.  |++++.+| ..|
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~--Gadin~~d~~~g   94 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNM--GADINARELGTG   94 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHc--CCCCCCCCCCCC
Confidence            3456677777777777444332   22356666655 7777888888887777554   6777777  77777776 467


Q ss_pred             ChHHHHHHHcCCHHHHHHHHh-cCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           76 YTALFFAAASGMVELAREIMT-HNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        76 ~TpLh~Aa~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      +||||+|+..|+.+++++|++ .++++ +.+|..|.||||+|+..++.+++++|+++++
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            788888887777888887774 57665 6777777888888877777777777777766

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=5.4e-20  Score=173.42  Aligned_cols=149  Identities=20%  Similarity=0.236  Sum_probs=99.9

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHc-----CCHHHHHHHHhcCccccccCCCCCCc
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS-----GMVELAREIMTHNKAIATEQDDKRVL  111 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~~~~g~t  111 (575)
                      |.+|+|+||||+.++|.++|+.||+.. -.+++.+|.-|+||+++|+..     .+.++|..|..-|. +.-.....|+|
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~gQT  342 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQHGQT  342 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhhcch
Confidence            667777777777777777777777663 456777777777777776643     35566666666543 22334455777


Q ss_pred             HHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778          112 PIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       112 pL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      +|++|+.+|+.++|+.|+.-++ ++.+|.+|.|+|++|+++|+.|+++.||.. ...++...|.+|.|+|..|.+.|+
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~-p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV-PSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc-CcccceeecCCCchhhhhHHhcCc
Confidence            7777777777777777777776 667777777777777777777777777766 566666677777777777776665

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=7.3e-20  Score=163.77  Aligned_cols=129  Identities=15%  Similarity=0.085  Sum_probs=105.2

Q ss_pred             CCcccchHHHHHHHcCCHHHHHHHHh----hCCCcccccCCCCCChHHhHHHHcCCHH---HHHHHHHcCCCCCccccc-
Q 037778            1 PIRRRRLKLYRAALTGDWAVARGIYD----VHEGEIRAPISKRKDTALHIAAAAKQYG---FVKELVQRMEPGDLAQEN-   72 (575)
Q Consensus         1 p~~~~~t~L~~Aa~~g~~~~v~~lL~----~~~~~~~~~~~~~g~TpLh~Aa~~g~~~---~v~~Ll~~~~~~~l~~~d-   72 (575)
                      ++++|.||||+|+..|+.+.+.....    ..+..+... |.+|.||||+|+..|+.+   +++.|++.  |.+++.+| 
T Consensus        13 ~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~--gadin~~~~   89 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEW--GADINGKER   89 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHc--CCCccccCC
Confidence            45789999999999998543321111    112223334 888999999999999874   68889998  89999998 


Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           73 NVGYTALFFAAASGMVELAREIMTH-NKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        73 ~~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      .+|+||||+|++.|+.+++++|++. ++++ +..|..|.||||+|+..|+.+++++|++.++
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4899999999999999999999974 7776 8899999999999999999999999999876

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=1.1e-19  Score=171.49  Aligned_cols=156  Identities=22%  Similarity=0.314  Sum_probs=144.0

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHc-----CCHHHHHHHHHcCCCCCcccccc-CCC
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAA-----KQYGFVKELVQRMEPGDLAQENN-VGY   76 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~-----g~~~~v~~Ll~~~~~~~l~~~d~-~g~   76 (575)
                      ..|+|+||+|+.++|+++|+.||+..-.+++.+ |.-|.||.+.|+..     .+.++|+.|.+.   .++|.+-. .|+
T Consensus       266 sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q-NrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaKAsQ~gQ  341 (452)
T KOG0514|consen  266 SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ-NRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAKASQHGQ  341 (452)
T ss_pred             CCCCeeeeeeecccchHHHHHHhccCccccccc-ccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchhhhhhcc
Confidence            368999999999999999999999988999998 99999999999875     567899999987   67887764 599


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcH
Q 037778           77 TALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLY  154 (575)
Q Consensus        77 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~  154 (575)
                      |+|++|+..|+.++|+.|+..|+++ |.+|.+|-|+|++|+++||+|++++|+....  ..+.|.+|.|+|.+|...|+.
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCch
Confidence            9999999999999999999999997 9999999999999999999999999999876  778999999999999999999


Q ss_pred             HHHHHHHHh
Q 037778          155 DVALRVFED  163 (575)
Q Consensus       155 ~~~~~Ll~~  163 (575)
                      |+...|-.+
T Consensus       421 eIa~mlYa~  429 (452)
T KOG0514|consen  421 EIAVMLYAH  429 (452)
T ss_pred             HHHHHHHHH
Confidence            999888766

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=3.5e-19  Score=150.96  Aligned_cols=144  Identities=19%  Similarity=0.222  Sum_probs=125.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCC
Q 037778            8 KLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGM   87 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~   87 (575)
                      .+.+|+..|.+..|+.||++.+..+|.+ |.+|.||||-|+.+||.++|+.|+..  |++.+.+...|+||||-||.-.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h~div~~ll~~--gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGHLDIVHELLLS--GANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCchHHHHHHHHc--cCCcccccccCccchhhhhcccc
Confidence            3678999999999999999988889988 99999999999999999999999998  89999999999999999999999


Q ss_pred             HHHHHHHHhcCccccccCCCCCCcHHHHHHHcCCh-HHHHHHHhccc--cccCcCchhhHHHHHHHhCcHH
Q 037778           88 VELAREIMTHNKAIATEQDDKRVLPIDLAASLGHE-DMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYD  155 (575)
Q Consensus        88 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~  155 (575)
                      .+++..|+++|+++ +.......||||+|+...+. ..+++|+....  +...+..+.||+.+|-+.+...
T Consensus       143 ~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~  212 (228)
T KOG0512|consen  143 FEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSH  212 (228)
T ss_pred             hhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhH
Confidence            99999999999997 88888889999999987654 45666665554  5667788888888887765443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=2.6e-19  Score=161.77  Aligned_cols=144  Identities=6%  Similarity=-0.069  Sum_probs=125.1

Q ss_pred             CCcccccCCCCCChHHhHHHHcCCH----HHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHH---HHHHHhcCccc
Q 037778           29 EGEIRAPISKRKDTALHIAAAAKQY----GFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVEL---AREIMTHNKAI  101 (575)
Q Consensus        29 ~~~~~~~~~~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~i---v~~Ll~~~~~~  101 (575)
                      +.+++.. +.++.++||.|++.|+.    +++++|++.  +.+++.+|..|+||||+|+..|+.+.   +++|++.|+++
T Consensus        10 ~~~~~~~-~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~--g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743         10 NLGAVEI-DEDEQNTFLRICRTGNIYELMEVAPFISGD--GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             chHHhhh-ccCCCcHHHHHHHcCCHHHHHHHHHHHhhc--chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            4455555 67788999999999998    566667777  78899999999999999999988654   89999999997


Q ss_pred             cccCC-CCCCcHHHHHHHcCChHHHHHHHh-ccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCc
Q 037778          102 ATEQD-DKRVLPIDLAASLGHEDMVVYLYG-QTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEET  178 (575)
Q Consensus       102 ~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~-~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~t  178 (575)
                       +.++ ..|.||||+|+..|+.+++++|++ .+. .+..+..|.||||+|+..++.++++.|++.  +.+.+.++..|..
T Consensus        87 -n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~  163 (166)
T PHA02743         87 -NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN--GAVCDDPLSIGLS  163 (166)
T ss_pred             -CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcccCCcc
Confidence             8887 589999999999999999999995 677 777899999999999999999999999997  8888888877753

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=4.1e-19  Score=161.24  Aligned_cols=128  Identities=19%  Similarity=0.182  Sum_probs=116.6

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhh-----CCCcccccCCCCCChHHhHHHHcCC----HHHHHHHHHcCCCCCccccc
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDV-----HEGEIRAPISKRKDTALHIAAAAKQ----YGFVKELVQRMEPGDLAQEN   72 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~-----~~~~~~~~~~~~g~TpLh~Aa~~g~----~~~v~~Ll~~~~~~~l~~~d   72 (575)
                      +..|.||||.|+..|+.++++.++..     .+.+++.+ |..|.||||+|+..|+    .+++++|++.  +++++.+|
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~~~   94 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIEL--GADINAQE   94 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHc--CCCCCCCC
Confidence            56799999999999999999988653     25678877 8999999999999999    5899999998  89999998


Q ss_pred             c-CCChHHHHHHHcCCHHHHHHHHh-cCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           73 N-VGYTALFFAAASGMVELAREIMT-HNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        73 ~-~g~TpLh~Aa~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      . +|+||||+|+..++.+++++|++ .++++ +..|.+|.||||+|+..|+.++++.|++.++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            5 89999999999999999999997 58886 8899999999999999999999999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.3e-18  Score=169.13  Aligned_cols=150  Identities=16%  Similarity=0.160  Sum_probs=123.6

Q ss_pred             cccc-hHHHHHHHcCCHHHHHHHHhhCCCcccccC---CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcccc-ccCCCh
Q 037778            3 RRRR-LKLYRAALTGDWAVARGIYDVHEGEIRAPI---SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQE-NNVGYT   77 (575)
Q Consensus         3 ~~~~-t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~---~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~-d~~g~T   77 (575)
                      +.|. ++||.|+..|+.++++.|++ +|++++.+.   +..|.||||+|+..|+.+++++|+++  |++++.+ +..|.|
T Consensus        30 ~~~~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~--GADVN~~~~~~g~T  106 (300)
T PHA02884         30 KICIANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY--GADVNRYAEEAKIT  106 (300)
T ss_pred             cCCCCHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcCcccCCCCCC
Confidence            4444 56777788899999998887 588888752   35899999999999999999999998  8999986 457999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHH
Q 037778           78 ALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVA  157 (575)
Q Consensus        78 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~  157 (575)
                      |||+|+..|+.++++.|++.|+++ +.+|..|.||||+|++.++.+++..+.+.+    .+..+.+|++++   ++.+++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDNE----ISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCCc----ccccccChhhhh---ccHHHH
Confidence            999999999999999999999997 889999999999999999888887665432    345556677654   367888


Q ss_pred             HHHHHh
Q 037778          158 LRVFED  163 (575)
Q Consensus       158 ~~Ll~~  163 (575)
                      +.|+.+
T Consensus       179 ~~Lish  184 (300)
T PHA02884        179 KILVSH  184 (300)
T ss_pred             HHHHHH
Confidence            888887

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.7e-18  Score=167.07  Aligned_cols=137  Identities=9%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             CCCC-ChHHhHHHHcCCHHHHHHHHHcCCCCCccccc----cCCChHHHHHHHcCCHHHHHHHHhcCccccccC-CCCCC
Q 037778           37 SKRK-DTALHIAAAAKQYGFVKELVQRMEPGDLAQEN----NVGYTALFFAAASGMVELAREIMTHNKAIATEQ-DDKRV  110 (575)
Q Consensus        37 ~~~g-~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d----~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~~g~  110 (575)
                      |..| .++||.|+..|+.+++++|+++  |++++.++    ..|.||||+|++.|+.+++++|+++|+++ +.. +..|.
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~  105 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKI  105 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCC
Confidence            5555 4567888888999999999999  99999874    68999999999999999999999999997 764 56899


Q ss_pred             cHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHH
Q 037778          111 LPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHAL  183 (575)
Q Consensus       111 tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a  183 (575)
                      ||||+|+..|+.+++++|++.|+ .+..+.+|.||||.|+..++.+++..+...       ..+..+.+|++++
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  172 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN-------EISNFYKHPKKIL  172 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC-------cccccccChhhhh
Confidence            99999999999999999999999 888999999999999998888887655543       3567778888875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=2.2e-18  Score=154.17  Aligned_cols=142  Identities=11%  Similarity=0.053  Sum_probs=108.4

Q ss_pred             ccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHH
Q 037778          103 TEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHA  182 (575)
Q Consensus       103 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~  182 (575)
                      +.+|.+|.||||+|++.|+  +++.+...+.                          +... .+.+...+|.+|.||||+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~--------------------------~~~~-~~~~~~~~d~~g~t~Lh~   61 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGG--VTDLLAFKNA--------------------------ISDE-NRYLVLEYNRHGKQCVHI   61 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCC--HHHHHHHHHH--------------------------hcch-hHHHHHHhcCCCCEEEEe
Confidence            5567778888888888876  2333322211                          0000 122334578899999999


Q ss_pred             HHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHH-
Q 037778          183 LARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIRE-  261 (575)
Q Consensus       183 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~-  261 (575)
                      |+..++                       ....++++.|++.|++++..+   +..|.||||+|+..|+.++++.|++. 
T Consensus        62 a~~~~~-----------------------~~~~e~v~~Ll~~gadin~~~---~~~g~T~Lh~A~~~~~~~i~~~Ll~~~  115 (154)
T PHA02736         62 VSNPDK-----------------------ADPQEKLKLLMEWGADINGKE---RVFGNTPLHIAVYTQNYELATWLCNQP  115 (154)
T ss_pred             ecccCc-----------------------hhHHHHHHHHHHcCCCccccC---CCCCCcHHHHHHHhCCHHHHHHHHhCC
Confidence            998872                       223578899999999988765   33456999999999999999999984 


Q ss_pred             CCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778          262 YPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       262 ~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                      +++ ++.+|..|+||||+|+..++.+++++|+++|++.+
T Consensus       116 g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        116 GVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            888 78999999999999999999999999999998764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1e-18  Score=159.65  Aligned_cols=134  Identities=17%  Similarity=0.187  Sum_probs=124.8

Q ss_pred             HHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHH
Q 037778           11 RAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVEL   90 (575)
Q Consensus        11 ~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~i   90 (575)
                      .=+++|+.-.|+..|++...++|.- |..|.+|||+|++.||..+|+.|+++  |+.+|..|...+||||+|+..||.++
T Consensus         6 ~wcregna~qvrlwld~tehdln~g-ddhgfsplhwaakegh~aivemll~r--garvn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    6 GWCREGNAFQVRLWLDDTEHDLNVG-DDHGFSPLHWAAKEGHVAIVEMLLSR--GARVNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhhcCCeEEEEEEecCcccccccc-cccCcchhhhhhhcccHHHHHHHHhc--ccccccccCCCCcchhhhhhcccHHH
Confidence            3467788777888888888888887 99999999999999999999999999  99999999999999999999999999


Q ss_pred             HHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHH
Q 037778           91 AREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTL  148 (575)
Q Consensus        91 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a  148 (575)
                      |+.|++..+++ +..|..|.|||||||..|...+.+-|+..|+ ++..+++|.|||..|
T Consensus        83 vqkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   83 VQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            99999999997 9999999999999999999999999999999 899999999998766

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=2.8e-17  Score=139.48  Aligned_cols=142  Identities=16%  Similarity=0.130  Sum_probs=127.0

Q ss_pred             HHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCCh
Q 037778           43 ALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHE  122 (575)
Q Consensus        43 pLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  122 (575)
                      -+-+|+..+....|+.||+.. ...+|.+|.+|+||||-|+++|+.+||+.|+..|++. +.+...|+||||-||...+.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence            467899999999999999983 4459999999999999999999999999999999996 88999999999999999999


Q ss_pred             HHHHHHHhccc-cccCcCchhhHHHHHHHhCc-HHHHHHHHHhhhccccccccCCCCcHHHHHHhcC
Q 037778          123 DMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL-YDVALRVFEDLHEKSAIGRAANEETALHALARKN  187 (575)
Q Consensus       123 ~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~-~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~  187 (575)
                      +++..|+++|+ ++.......||||.++...+ .+.+.+|+.. ....+..++..+.||+..|-+.+
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~d-ryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHD-RYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhc-cccChhhhcCccchHHHHHHHhh
Confidence            99999999999 88888999999999998665 4566666666 67777788999999999998765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=1.7e-14  Score=150.62  Aligned_cols=154  Identities=18%  Similarity=0.225  Sum_probs=107.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhC--------CCcccccCCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCCccc----c
Q 037778            7 LKLYRAALTGDWAVARGIYDVH--------EGEIRAPISKRKDTALHIAAAA---KQYGFVKELVQRMEPGDLAQ----E   71 (575)
Q Consensus         7 t~L~~Aa~~g~~~~v~~lL~~~--------~~~~~~~~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~l~~----~   71 (575)
                      .++..|..+|..+....++...        ..+++.+ ..-|+|.||.|.-+   ++-++++.|++.. |.-+|.    .
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~-p~lind~~~~e  180 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEIF-PKLINDIYTSE  180 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHHh-HHHhhhhhhhH
Confidence            6788888999998888777643        1456665 67899999999984   5679999999986 544432    2


Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHhcCccccccC---------C--------------CCCCcHHHHHHHcCChHHHHHH
Q 037778           72 NNVGYTALFFAAASGMVELAREIMTHNKAIATEQ---------D--------------DKRVLPIDLAASLGHEDMVVYL  128 (575)
Q Consensus        72 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~---------~--------------~~g~tpL~~A~~~g~~~~v~~L  128 (575)
                      ...|.||||+|+.+.+.++|+.|++.|+|+ +.+         |              ..|+.||-+||--++.|++++|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            356999999999999999999999999997 321         1              1255666666666666666666


Q ss_pred             Hhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          129 YGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       129 l~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      +++++ ++.+|.+|+|.||.++.....++-..+|+.
T Consensus       260 l~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~  295 (782)
T KOG3676|consen  260 LAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALEL  295 (782)
T ss_pred             HhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhc
Confidence            66555 555555555555555555444444444444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=5.5e-17  Score=148.47  Aligned_cols=109  Identities=26%  Similarity=0.345  Sum_probs=102.9

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      ..|.+|||+||+.|+..+++.||.+ ++.+|.. +...+||||.|+.+||.++|+.|+++  .+|+|..|..|+||||||
T Consensus        32 dhgfsplhwaakegh~aivemll~r-garvn~t-nmgddtplhlaaahghrdivqkll~~--kadvnavnehgntplhya  107 (448)
T KOG0195|consen   32 DHGFSPLHWAAKEGHVAIVEMLLSR-GARVNST-NMGDDTPLHLAAAHGHRDIVQKLLSR--KADVNAVNEHGNTPLHYA  107 (448)
T ss_pred             ccCcchhhhhhhcccHHHHHHHHhc-ccccccc-cCCCCcchhhhhhcccHHHHHHHHHH--hcccchhhccCCCchhhh
Confidence            3578999999999999999998885 8889886 78889999999999999999999999  899999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      |--|.-.+++-|++.|+.+ +..|++|.|||.-|
T Consensus       108 cfwgydqiaedli~~ga~v-~icnk~g~tpldka  140 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKA  140 (448)
T ss_pred             hhhcHHHHHHHHHhcccee-eecccCCCCchhhh
Confidence            9999999999999999997 99999999999987

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=5.4e-16  Score=124.78  Aligned_cols=88  Identities=27%  Similarity=0.430  Sum_probs=69.2

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCH
Q 037778            9 LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMV   88 (575)
Q Consensus         9 L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~   88 (575)
                      ||.|++.|+.++++.+++ .+.+++.     |+||||+|+..|+.+++++|++.  |.+++.+|.+|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL-----GNTALHYAAENGNLEIVKLLLEN--GADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHT--TTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHh--cccccccCCCCCCHHHHHHHcCCH
Confidence            688888888888888887 4544432     77888888888888888888887  788888888888888888888888


Q ss_pred             HHHHHHHhcCccccccC
Q 037778           89 ELAREIMTHNKAIATEQ  105 (575)
Q Consensus        89 ~iv~~Ll~~~~~~~~~~  105 (575)
                      +++++|+++|+++ +.+
T Consensus        73 ~~~~~Ll~~g~~~-~~~   88 (89)
T PF12796_consen   73 EIVKLLLEHGADV-NIR   88 (89)
T ss_dssp             HHHHHHHHTTT-T-TSS
T ss_pred             HHHHHHHHcCCCC-CCc
Confidence            8888888888875 544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.66  E-value=1.7e-15  Score=129.83  Aligned_cols=122  Identities=26%  Similarity=0.392  Sum_probs=75.5

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +.+|.||||.|+..|+.+.++.+++. +...+.. +..|.||||.|+..++.++++.|++.  +.+++..+..|.||+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEK--GADVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHH
Confidence            34566666666666666666666553 3333333 55666666666666666666666666  45556666666666666


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL  128 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  128 (575)
                      |+..++.+++++|++++.+. +..+..|.||+++|...++.+++++|
T Consensus        80 a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            66666666666666666554 55556666666666666666666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.64  E-value=3.1e-15  Score=128.28  Aligned_cols=122  Identities=25%  Similarity=0.348  Sum_probs=112.7

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      |.+|.||||+|+..|+.+++++|++.  +.+.+.++..|.||||.|+..++.++++.|++.++.+ +..+..|.||+|.|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~--~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a   80 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLA   80 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHH
Confidence            67899999999999999999999999  7777889999999999999999999999999999875 77889999999999


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      +..++.+++++|++.+. .+..+..+.+|++.|+..+..+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999886 6667888999999999999999888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.64  E-value=1.5e-15  Score=122.26  Aligned_cols=83  Identities=29%  Similarity=0.430  Sum_probs=77.5

Q ss_pred             HhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChH
Q 037778           44 LHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHED  123 (575)
Q Consensus        44 Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  123 (575)
                      ||+|++.|+.+++++|++.  +.+++.    |+||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+.+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~--~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK--GADINL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT--TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC--cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence            7999999999999999997  777766    999999999999999999999999997 889999999999999999999


Q ss_pred             HHHHHHhccc
Q 037778          124 MVVYLYGQTK  133 (575)
Q Consensus       124 ~v~~Ll~~~~  133 (575)
                      ++++|+++++
T Consensus        74 ~~~~Ll~~g~   83 (89)
T PF12796_consen   74 IVKLLLEHGA   83 (89)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHcCC
Confidence            9999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=1e-14  Score=110.65  Aligned_cols=105  Identities=14%  Similarity=0.148  Sum_probs=92.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHc
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS   85 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~   85 (575)
                      .-...+++++|..+.|+....+ +.+++..  ..|++|||+|+..|+.+++++|+..  |++++.+|+.|-|||.-|+..
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~-g~nVn~~--~ggR~plhyAAD~GQl~ilefli~i--GA~i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNE-GLNVNEI--YGGRTPLHYAADYGQLSILEFLISI--GANIQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHc-cccHHHH--hCCcccchHhhhcchHHHHHHHHHh--ccccCCccccCCcHHHHHHHH
Confidence            3457789999999999998885 5777765  4899999999999999999999999  999999999999999999999


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           86 GMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        86 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      ||.++|++|++.|++- ..+..+|.+.+..+
T Consensus        78 GH~~cVklLL~~GAdr-t~~~PdG~~~~eat  107 (117)
T KOG4214|consen   78 GHRDCVKLLLQNGADR-TIHAPDGTALIEAT  107 (117)
T ss_pred             hhHHHHHHHHHcCccc-ceeCCCchhHHhhc
Confidence            9999999999999996 77778887766554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.47  E-value=1.6e-13  Score=104.22  Aligned_cols=103  Identities=19%  Similarity=0.241  Sum_probs=93.0

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH  121 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  121 (575)
                      --..+++++|..+-|+..+..  +.++|..- .|+||||+|+-.|+.+++++|+..|+++ +.+|++|-|||..|+..||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~--g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE--GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc--cccHHHHh-CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhh
Confidence            346789999999999999988  77777544 8999999999999999999999999998 9999999999999999999


Q ss_pred             hHHHHHHHhccc-cccCcCchhhHHHHH
Q 037778          122 EDMVVYLYGQTK-NSLNDEDRSHLLVTL  148 (575)
Q Consensus       122 ~~~v~~Ll~~~~-~~~~~~~g~t~L~~a  148 (575)
                      .++|++|+++|+ .....++|.+.+..+
T Consensus        80 ~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999 677888888877654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=5.8e-13  Score=127.03  Aligned_cols=125  Identities=20%  Similarity=0.241  Sum_probs=102.7

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCC-----HHHHHHHHhcCc--cccccCCCCC
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGM-----VELAREIMTHNK--AIATEQDDKR  109 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~-----~~iv~~Ll~~~~--~~~~~~~~~g  109 (575)
                      +..+.+++|.|+..+..+++++++..  +.+++.+|.+|.||||+|+..|+     .++++.|++.++  +..+.+|..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLAS--GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHc--CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            56678888888888888888888887  78888888888888888888888     888888888888  4557778888


Q ss_pred             CcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          110 VLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       110 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      .||||+|+..|+.++++.|++.++ ....+..|.|+++.|...+..++++.+++.
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            888888888888888888888887 666778888888888888888888888775

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.43  E-value=2.1e-12  Score=123.20  Aligned_cols=124  Identities=23%  Similarity=0.281  Sum_probs=111.3

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCC-----HHHHHHHHHcCCCC---CccccccCC
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQ-----YGFVKELVQRMEPG---DLAQENNVG   75 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~-----~~~v~~Ll~~~~~~---~l~~~d~~g   75 (575)
                      .+.+++|.++..|+.+.++.++. .+.+++.+ +.+|.||||+|+..|+     .++++.|++.  ++   ..+.+|..|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~--g~~~~~~~~~~~~g  147 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLA-SGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEA--GADLDVNNLRDEDG  147 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHH-cCCCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHc--CCCCCCccccCCCC
Confidence            36789999999999999987777 57788776 9999999999999999     9999999999  67   677779999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778           76 YTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT  132 (575)
Q Consensus        76 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  132 (575)
                      +||||+|+..|+.++++.|++.+++. +..+..|.|+++.|+..++.++++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999986 888999999999999999999999999875

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=7.7e-13  Score=94.99  Aligned_cols=54  Identities=28%  Similarity=0.457  Sum_probs=35.4

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHH
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIM   95 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll   95 (575)
                      |.||||+|++.|+.+++++|++.  +.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~--~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH--GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT--TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56777777777777777777777  6777777777777777777777777777764

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=2.2e-12  Score=118.61  Aligned_cols=125  Identities=19%  Similarity=0.224  Sum_probs=113.3

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccc-cccCCChHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQ-ENNVGYTALFFA   82 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~-~d~~g~TpLh~A   82 (575)
                      .-..||..++..|+.+....||.. -..++.+ |++|.|||.-|+..|+.++|+.|++.  |+|+|. ++..++||||+|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~-D~sGMs~LahAaykGnl~~v~lll~~--gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST-VRQVNQR-DPSGMSVLAHAAYKGNLTLVELLLEL--GADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH-hhhhhcc-CCCcccHHHHHHhcCcHHHHHHHHHh--CCCcCcccccccccHHHHH
Confidence            345799999999999999999985 5667877 99999999999999999999999999  899886 456689999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      |.+|+.++.+.|++.|+.. ...|.-|.|+-.+|+.-|+.+.|..+-++-.
T Consensus        87 ALSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             HHcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcccc
Confidence            9999999999999999995 8899999999999999999999998877654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=3.5e-12  Score=126.18  Aligned_cols=117  Identities=24%  Similarity=0.321  Sum_probs=66.4

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCH
Q 037778            9 LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMV   88 (575)
Q Consensus         9 L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~   88 (575)
                      |..|+..|.+++|+.++.+ -.+.... +.+|-|+||-|+-.||.+||++|++.  |+++|..|.+|+||||+||.++++
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~--ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQP-NDEGITALHNAICAGHYEIVKFLIEF--GANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCC-CccchhHHhhhhhcchhHHHHHHHhc--CCcccCccCCCCchhhhhhhcCch
Confidence            4446666666666665553 2333333 55566666666666666666666666  666666666666666666666666


Q ss_pred             HHHHHHHhcCccccccCCCCCCcHHHHHH--HcCChHHHHHHH
Q 037778           89 ELAREIMTHNKAIATEQDDKRVLPIDLAA--SLGHEDMVVYLY  129 (575)
Q Consensus        89 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll  129 (575)
                      .+++.|++.|+.+....-.++.|+..-+-  +.|..++.+||.
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            66666666666554444445555554432  234445555554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.2e-12  Score=94.40  Aligned_cols=55  Identities=27%  Similarity=0.331  Sum_probs=23.2

Q ss_pred             HhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778           25 YDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus        25 L~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      |+..+.+++.+ |..|+||||+|+..|+.++|++|++.  +.+++.+|.+|+||||+|
T Consensus         2 L~~~~~~~n~~-d~~G~T~LH~A~~~g~~~~v~~Ll~~--g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQ-DKYGNTPLHWAARYGHSEVVRLLLQN--GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT----TTS--HHHHHHHHT-HHHHHHHHHC--T--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCc-CCCCCcHHHHHHHcCcHHHHHHHHHC--cCCCCCCcCCCCCHHHhC
Confidence            34333555555 66666666666666666666666655  666666666666666665

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.32  E-value=1.2e-12  Score=94.39  Aligned_cols=56  Identities=27%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             HHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHH
Q 037778          258 LIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLA  317 (575)
Q Consensus       258 Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlA  317 (575)
                      |+++++..++.+|..|+||||+|+.+|+.+++++|++.|++++.    +|++|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~----~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA----KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-------TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC----CcCCCCCHHHhC
Confidence            56777444899999999999999999999999999999999876    999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.30  E-value=8.9e-12  Score=136.69  Aligned_cols=104  Identities=22%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCC
Q 037778            8 KLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGM   87 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~   87 (575)
                      .|+.|+..|+.+.++.|++ .+.+++.+ |.+|.||||+|+..|+.+++++|++.  |++++.+|.+|.||||+|+..|+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~-~Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~--Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLT-GGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEF--GADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCCc
Confidence            4667777777777776666 46677766 77777777777777777777777777  67777777777777777777777


Q ss_pred             HHHHHHHHhc-------CccccccCCCCCCcHHHHH
Q 037778           88 VELAREIMTH-------NKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        88 ~~iv~~Ll~~-------~~~~~~~~~~~g~tpL~~A  116 (575)
                      .+++++|+++       +++. +..+..|.+|+..+
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~  195 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCC-CccccCCCCccchh
Confidence            7777777776       5553 44555566665544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.29  E-value=6.6e-12  Score=90.11  Aligned_cols=54  Identities=35%  Similarity=0.568  Sum_probs=45.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHH
Q 037778           75 GYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLY  129 (575)
Q Consensus        75 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  129 (575)
                      |.||||+|++.|+.+++++|++++.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999996 888999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.27  E-value=1.5e-11  Score=135.01  Aligned_cols=102  Identities=21%  Similarity=0.181  Sum_probs=91.4

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH  121 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  121 (575)
                      +.|+.|+..|+.+.++.|++.  |++++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~--Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence            358899999999999999998  8999999999999999999999999999999999997 9999999999999999999


Q ss_pred             hHHHHHHHhc-------cc-cccCcCchhhHHH
Q 037778          122 EDMVVYLYGQ-------TK-NSLNDEDRSHLLV  146 (575)
Q Consensus       122 ~~~v~~Ll~~-------~~-~~~~~~~g~t~L~  146 (575)
                      .+++++|+++       ++ ....+.+|.+++.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccc
Confidence            9999999998       44 4445555555543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.20  E-value=1.1e-10  Score=107.53  Aligned_cols=122  Identities=15%  Similarity=0.114  Sum_probs=112.3

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL  119 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  119 (575)
                      -..||.-++..|..+-...|++-  -.++|.+|..|.|||.-|+..|+.++++.|++.|+++....+..+.||||.|+.+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            36799999999999999999987  5679999999999999999999999999999999999778888999999999999


Q ss_pred             CChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          120 GHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       120 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      |+.++.+.|++.|+ ....+.-|+|+-..|+.-|+.+++..+=++
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999 788899999999999999999888776443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=5.6e-11  Score=117.80  Aligned_cols=117  Identities=19%  Similarity=0.172  Sum_probs=100.6

Q ss_pred             HHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCCh
Q 037778           43 ALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHE  122 (575)
Q Consensus        43 pLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  122 (575)
                      .|.-|+..|..|+|+..+..  -.|....|.+|-|+||-|+-.||.+||++|++.|+++ +..|.+|+||||+|+..++.
T Consensus       553 LLLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCch
Confidence            34568889999999999998  5889999999999999999999999999999999997 99999999999999999999


Q ss_pred             HHHHHHHhccc--cccCcCchhhHHHHHH--HhCcHHHHHHHHH
Q 037778          123 DMVVYLYGQTK--NSLNDEDRSHLLVTLI--QTDLYDVALRVFE  162 (575)
Q Consensus       123 ~~v~~Ll~~~~--~~~~~~~g~t~L~~a~--~~~~~~~~~~Ll~  162 (575)
                      .+++.|++.|+  ....-.++.|+..-|-  +.|..++.++|-.
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999998  3335567788877663  3556666666643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.00  E-value=1.3e-09  Score=108.98  Aligned_cols=122  Identities=21%  Similarity=0.244  Sum_probs=109.3

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCH
Q 037778            9 LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMV   88 (575)
Q Consensus         9 L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~   88 (575)
                      +..|+..+|+-.+++.-. ++.++..+ +++..|.||+|+..|+-|+|++++++..++.++..|..|+|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~-~gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHL-NGGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHh-cCCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            678999999888877766 46666666 8899999999999999999999999974455899999999999999999999


Q ss_pred             HHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           89 ELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        89 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      .+.++|++.|+.+ ...|..|.||-.-|-+.|+.++..||-+...
T Consensus       948 ~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  948 AVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             HHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            9999999999997 8999999999999999999999999976644

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.82  E-value=3.4e-09  Score=110.65  Aligned_cols=101  Identities=21%  Similarity=0.315  Sum_probs=89.3

Q ss_pred             cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccC-CChHHHHHHHcCCHHHHHH
Q 037778           15 TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNV-GYTALFFAAASGMVELARE   93 (575)
Q Consensus        15 ~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~-g~TpLh~Aa~~g~~~iv~~   93 (575)
                      +|....++.+++++..+.-...|..|+|+||+|+..|..+++++|+++  |.++..+|.+ |.||||-|...|+.|++-.
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh--Gidv~vqD~ESG~taLHRaiyyG~idca~l  104 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH--GIDVFVQDEESGYTALHRAIYYGNIDCASL  104 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc--CceeeeccccccchHhhHhhhhchHHHHHH
Confidence            345556777777765555444599999999999999999999999999  9999999976 9999999999999999999


Q ss_pred             HHhcCccccccCCCCCCcHHHHHHH
Q 037778           94 IMTHNKAIATEQDDKRVLPIDLAAS  118 (575)
Q Consensus        94 Ll~~~~~~~~~~~~~g~tpL~~A~~  118 (575)
                      |+++|..+ ...|++|.+||..-++
T Consensus       105 LL~~g~SL-~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  105 LLSKGRSL-RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHhcCCce-EEecccCCCHHHHHhh
Confidence            99999997 9999999999999887

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.75  E-value=9.2e-09  Score=101.18  Aligned_cols=95  Identities=22%  Similarity=0.220  Sum_probs=68.6

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      +.++..++.+|++.|....++-+.-.  +.|++.+|.+.+|+||+||..|+.+++|+|++....-++.+|..|.|||.-|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            34455667777777777777776666  6777777777777777777777777777777765554567777777777777


Q ss_pred             HHcCChHHHHHHHhccc
Q 037778          117 ASLGHEDMVVYLYGQTK  133 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~  133 (575)
                      ...+|.+++++|-+...
T Consensus       581 ~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhcCcHHHHHHHHHHhc
Confidence            77777777777766543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.57  E-value=1.8e-07  Score=92.64  Aligned_cols=86  Identities=21%  Similarity=0.201  Sum_probs=77.5

Q ss_pred             HHhHHHHcCCHHHHHHHHHcCCCCCcccccc-CCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778           43 ALHIAAAAKQYGFVKELVQRMEPGDLAQENN-VGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH  121 (575)
Q Consensus        43 pLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~-~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  121 (575)
                      -||-.++.|+.|..--||..  |++.|..+. .|+||||.|++.|+..-+++|.-.|+++ +..|.+|.||+.+|-..||
T Consensus       136 QLhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCc
Confidence            48999999999999999998  899888774 4999999999999999999999999996 9999999999999999999


Q ss_pred             hHHHHHHHhc
Q 037778          122 EDMVVYLYGQ  131 (575)
Q Consensus       122 ~~~v~~Ll~~  131 (575)
                      .++.+.|++.
T Consensus       213 ~~laeRl~e~  222 (669)
T KOG0818|consen  213 HELAERLVEI  222 (669)
T ss_pred             hHHHHHHHHH
Confidence            9988888764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.57  E-value=2e-07  Score=92.29  Aligned_cols=88  Identities=22%  Similarity=0.234  Sum_probs=81.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCC
Q 037778            8 KLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGM   87 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~   87 (575)
                      .||..++.|+.+.--.+|. -|++.|..--..|+||||+|++.|+..-++.|+-+  |+|+...|.+|.||+.+|-..||
T Consensus       136 QLhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY--GAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY--GADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhhc--cCCCCCCCCCCCcHHHHHHhcCc
Confidence            6999999999999988998 48888887567799999999999999999999998  99999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 037778           88 VELAREIMTHN   98 (575)
Q Consensus        88 ~~iv~~Ll~~~   98 (575)
                      .++.+.|++.-
T Consensus       213 ~~laeRl~e~~  223 (669)
T KOG0818|consen  213 HELAERLVEIQ  223 (669)
T ss_pred             hHHHHHHHHHH
Confidence            99999988853

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.56  E-value=5.8e-08  Score=95.66  Aligned_cols=91  Identities=23%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      +..++.+||+.||+..++++.-. +.+++.+ |.+.+|+||+||..|+.+++++|++.. +.+++.+|..|+|||.-|-.
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~~-kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQ-GMDLETK-DYDDRTALHVAAAEGHVEVVKFLLNAC-KVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHh-ccccccc-ccccchhheeecccCceeHHHHHHHHH-cCCCChhhccCCCcchHhHh
Confidence            34567888888888888877764 7778777 888888888888888888888888876 77888888888888888888


Q ss_pred             cCCHHHHHHHHhcC
Q 037778           85 SGMVELAREIMTHN   98 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~   98 (575)
                      .+|.+++++|-+.-
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            88888888877653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.51  E-value=1.2e-07  Score=58.14  Aligned_cols=28  Identities=32%  Similarity=0.459  Sum_probs=15.6

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCcc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLA   69 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~   69 (575)
                      |+||||+|++.|+.|+|++|+++  |+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~--gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEH--GADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHc--CCCCC
Confidence            55555555555555555555555  45443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=2.5e-07  Score=92.96  Aligned_cols=88  Identities=22%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhC-CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC
Q 037778            8 KLYRAALTGDWAVARGIYDVH-EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG   86 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~-~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g   86 (575)
                      |||+++...+++.....+... ...++.+ |..|+||||.|+..|+.+.++.|+..  ++++..+|.+|++|||.|+..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~-D~~g~TpLhlAV~Lg~~~~a~~Ll~a--~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRR-DPPGRTPLHLAVRLGHVEAARILLSA--GADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccc-cCCCCccHHHHHHhcCHHHHHHHHhc--CCCccccccccccHHHHHHHcC
Confidence            466666666666555543322 2233333 66666667777666666666666666  6666666666666677666666


Q ss_pred             CHHHHHHHHhcC
Q 037778           87 MVELAREIMTHN   98 (575)
Q Consensus        87 ~~~iv~~Ll~~~   98 (575)
                      +.+++..++.+.
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            666666666553

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.50  E-value=4.1e-06  Score=89.30  Aligned_cols=116  Identities=21%  Similarity=0.230  Sum_probs=93.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCC---cccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            8 KLYRAALTGDWAVARGIYDVHEG---EIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~~~---~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      -...|+.+||...|++.+++...   ++|.. |.-|+++||+|+.+.|.|++++|+++  +.+.       ..+|.+|+.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nenle~~eLLl~~--~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNENLELQELLLDT--SSEE-------GDALLLAIA   97 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceecccccccHHHHHHHhcC--cccc-------chHHHHHHH
Confidence            35579999999999999997543   56666 88999999999999999999999988  3333       348888999


Q ss_pred             cCCHHHHHHHHhcCccc---------cccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           85 SGMVELAREIMTHNKAI---------ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      .|..++|+.++.+-...         ....=..+.|||.+||..++.|+++.|++.+.
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            99999999999874322         01222346799999999999999999999987

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.48  E-value=1.9e-07  Score=59.02  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc
Q 037778           39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN   72 (575)
Q Consensus        39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d   72 (575)
                      +|.||||+|+..|+.+++++|+++  |++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH--GADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT--TSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC--cCCCCCCC
Confidence            366777777777777777777776  66666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.42  E-value=2.2e-07  Score=57.01  Aligned_cols=29  Identities=31%  Similarity=0.387  Sum_probs=22.4

Q ss_pred             CCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778          272 NGYTIFHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       272 ~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                      +|+||||+|+++|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47788888888888888888888877654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.39  E-value=7e-07  Score=89.85  Aligned_cols=91  Identities=20%  Similarity=0.265  Sum_probs=78.0

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH  121 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  121 (575)
                      -|||.++.....+-.+..+.......++.+|..|+||||+|+..|+.+.++.|+..++++ ..+|+.|.+|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            359999998887766654433125679999999999999999999999999999999997 8999999999999999999


Q ss_pred             hHHHHHHHhccc
Q 037778          122 EDMVVYLYGQTK  133 (575)
Q Consensus       122 ~~~v~~Ll~~~~  133 (575)
                      .+++..++.+..
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            999888877643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.38  E-value=9.9e-07  Score=88.74  Aligned_cols=117  Identities=16%  Similarity=0.097  Sum_probs=95.6

Q ss_pred             hHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCcc-ccccCCCCCCcHHHHHHHcCChH
Q 037778           45 HIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKA-IATEQDDKRVLPIDLAASLGHED  123 (575)
Q Consensus        45 h~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~~  123 (575)
                      --|+..++.--.+..-..  |.++-.++.+..|.||+|+..|+-|+|+++++++|. +.+..|..|+|.||-|+..++-.
T Consensus       871 l~av~~~D~~klqE~h~~--gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLN--GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHhccHHHHHHHHhc--CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            344444443333333333  778888899999999999999999999999999985 55778899999999999999999


Q ss_pred             HHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          124 MVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       124 ~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      +.++|++.|+ ....|..|.||-.-|-..++.|++.+|-.+
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999 677899999999999999999988887654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.33  E-value=6.9e-07  Score=56.44  Aligned_cols=32  Identities=28%  Similarity=0.517  Sum_probs=26.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccccccCC
Q 037778           74 VGYTALFFAAASGMVELAREIMTHNKAIATEQD  106 (575)
Q Consensus        74 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~  106 (575)
                      +|+||||+|+..|+.+++++|+++|+++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            5888888888888888888888888886 5554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.30  E-value=4.7e-07  Score=95.07  Aligned_cols=88  Identities=15%  Similarity=0.093  Sum_probs=69.4

Q ss_pred             hccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHH
Q 037778          165 HEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIF  244 (575)
Q Consensus       165 ~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh  244 (575)
                      ....++.+|..|+|+||+++..+                          ..+++++|+++|+++..++   ..+|+||||
T Consensus        41 c~n~anikD~~GR~alH~~~S~~--------------------------k~~~l~wLlqhGidv~vqD---~ESG~taLH   91 (1267)
T KOG0783|consen   41 CQNLANIKDRYGRTALHIAVSEN--------------------------KNSFLRWLLQHGIDVFVQD---EESGYTALH   91 (1267)
T ss_pred             hhhhhhHHHhhccceeeeeeccc--------------------------hhHHHHHHHhcCceeeecc---ccccchHhh
Confidence            55667778888888888888777                          3678888888888887776   667778888


Q ss_pred             HHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHH
Q 037778          245 DAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVL  282 (575)
Q Consensus       245 ~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~  282 (575)
                      -|+.+|++|.+-.||++|.. ....|++|..||...++
T Consensus        92 RaiyyG~idca~lLL~~g~S-L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   92 RAIYYGNIDCASLLLSKGRS-LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HhhhhchHHHHHHHHhcCCc-eEEecccCCCHHHHHhh
Confidence            88888888888888888877 67788888888877665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.21  E-value=0.00011  Score=78.62  Aligned_cols=122  Identities=16%  Similarity=0.060  Sum_probs=72.7

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhccc-----cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHH
Q 037778          108 KRVLPIDLAASLGHEDMVVYLYGQTK-----NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHA  182 (575)
Q Consensus       108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~  182 (575)
                      .++--...|+.+|+...|+..++...     .+..|.-|+++++.|+.+.+.++.+.|+++  +...       ..+|-+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~--~~~~-------gdALL~   94 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT--SSEE-------GDALLL   94 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC--cccc-------chHHHH
Confidence            34455667888888888888777654     455777788888888888888888777776  2221       235555


Q ss_pred             HHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhh------hcccCCChHHHHHHHcCCHHHHH
Q 037778          183 LARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRI------SNLIAEPELIFDAARQGNLEFLL  256 (575)
Q Consensus       183 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~------~~~~~~~tpLh~Aa~~g~~~iv~  256 (575)
                      |+..+                          ..+.++.++.+-........      ..-..+-||+.+||..+|.|+++
T Consensus        95 aI~~~--------------------------~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~  148 (822)
T KOG3609|consen   95 AIAVG--------------------------SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQ  148 (822)
T ss_pred             HHHHH--------------------------HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHH
Confidence            66555                          45666666654332211110      00111226666666666666666


Q ss_pred             HHHHHCCC
Q 037778          257 ILIREYPD  264 (575)
Q Consensus       257 ~Ll~~~~d  264 (575)
                      .|+++|+.
T Consensus       149 ~Ll~kg~~  156 (822)
T KOG3609|consen  149 CLLTRGHC  156 (822)
T ss_pred             HHHHcCCC
Confidence            66666655

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.16  E-value=5.1e-06  Score=84.17  Aligned_cols=90  Identities=21%  Similarity=0.169  Sum_probs=66.1

Q ss_pred             HHhHHHHcCCHHHHHHHHHcCCCCCccc--cccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcC
Q 037778           43 ALHIAAAAKQYGFVKELVQRMEPGDLAQ--ENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLG  120 (575)
Q Consensus        43 pLh~Aa~~g~~~~v~~Ll~~~~~~~l~~--~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  120 (575)
                      -|--|+...+...+-.||.+....+++.  .+.+|.|+||+||+.|++.+.++|+=+|.++ ..+|..|.|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcc
Confidence            3666777777777777777742233333  3455678888888888888888888888876 778888888888888888


Q ss_pred             ChHHHHHHHhccc
Q 037778          121 HEDMVVYLYGQTK  133 (575)
Q Consensus       121 ~~~~v~~Ll~~~~  133 (575)
                      ..|++..|+++|.
T Consensus       706 sqec~d~llq~gc  718 (749)
T KOG0705|consen  706 SQECIDVLLQYGC  718 (749)
T ss_pred             cHHHHHHHHHcCC
Confidence            8888888888876

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.05  E-value=1e-05  Score=82.12  Aligned_cols=90  Identities=23%  Similarity=0.220  Sum_probs=70.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCc--c-cccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            8 KLYRAALTGDWAVARGIYDVHEGE--I-RAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~~~~--~-~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      .|..|+...|+..+..||.. +..  + +.-.+.+|.|+||.|++.|+..+.++|+-+  |.|+-.+|..|+|+|.||-.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAh-g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy--g~dv~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAH-GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY--GVDVMARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh--CccceecccCCchhhhhHhh
Confidence            46778888888888777763 321  2 222356678999999999999888888877  88888888889999999888


Q ss_pred             cCCHHHHHHHHhcCcc
Q 037778           85 SGMVELAREIMTHNKA  100 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~  100 (575)
                      .|..|++..|+.+|..
T Consensus       704 a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCP  719 (749)
T ss_pred             cccHHHHHHHHHcCCC
Confidence            8888999988888753

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.01  E-value=5.4e-06  Score=90.31  Aligned_cols=123  Identities=17%  Similarity=0.127  Sum_probs=51.7

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      |++.+|.++..+..-.+.++++..+...... |.+|.-.+|. |..++.+..-+++... +..++.+|..|+||||+|+.
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~el-d~d~qgV~hf-ca~lg~ewA~ll~~~~-~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLEL-DRDGQGVIHF-CAALGYEWAFLPISAD-GVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhh-cccCCChhhH-hhhcCCceeEEEEeec-ccccccccCCCCcccchHhh
Confidence            4444555555555544544444212111111 3444444444 3333333333333322 34445555555555555555


Q ss_pred             cCCHHHHHHHHhcCcccc-----ccCCCCCCcHHHHHHHcCChHHHHHHHh
Q 037778           85 SGMVELAREIMTHNKAIA-----TEQDDKRVLPIDLAASLGHEDMVVYLYG  130 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  130 (575)
                      .|+..++..|++.+++..     ......|.|+-..|..+|+..+..+|-+
T Consensus       651 ~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  651 RGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            555555555554433211     1112234444444444444444444433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.80  E-value=2.3e-05  Score=85.52  Aligned_cols=126  Identities=16%  Similarity=0.072  Sum_probs=98.9

Q ss_pred             CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHH
Q 037778           36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL  115 (575)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  115 (575)
                      ....|.|.||.++..++.-+++.+++.. +......|.+|.-.+|++ ..++.+.+-+++.....-.+.+|..|+||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~-~~~~~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWA-GSGDLELDRDGQGVIHFC-AALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhccc-ccCchhhcccCCChhhHh-hhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3567899999999999999999999852 445566678888888884 45566666666654444348999999999999


Q ss_pred             HHHcCChHHHHHHHhccc-------cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          116 AASLGHEDMVVYLYGQTK-------NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       116 A~~~g~~~~v~~Ll~~~~-------~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      |+.+|+..++..|++.++       +......|.|+-..|-.+|+.++.-+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999998776       223556788888888888888877776543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.79  E-value=3.6e-05  Score=74.37  Aligned_cols=72  Identities=14%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      --|..|++.|..+.|++|++.  |.++|..|...+.||.+|+..||.++|++|+++|+-- ..-..+|...++-|
T Consensus        38 ~elceacR~GD~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhhhh
Confidence            346777777777777777776  7777777777777777777777777777777777642 33333455554444

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.76  E-value=2.4e-05  Score=85.99  Aligned_cols=83  Identities=28%  Similarity=0.370  Sum_probs=49.4

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL  119 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  119 (575)
                      |.|+||.|+..|..-.++.|++.  ++++|.+|..|+||||.+...|+...+..|++++++. +..+.+|.+|+++|...
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~--ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQN--GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhc--CCcchhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHHhhh
Confidence            45666666666666666666665  5556666666666666666666666666666665553 55566666666666554


Q ss_pred             CChHHH
Q 037778          120 GHEDMV  125 (575)
Q Consensus       120 g~~~~v  125 (575)
                      .+.+.+
T Consensus       733 ~~~d~~  738 (785)
T KOG0521|consen  733 ANADIV  738 (785)
T ss_pred             ccccHH
Confidence            444433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.74  E-value=6.5e-05  Score=65.94  Aligned_cols=68  Identities=24%  Similarity=0.342  Sum_probs=46.4

Q ss_pred             CCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778           65 PGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT  132 (575)
Q Consensus        65 ~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  132 (575)
                      +.++|.+|..|+|||+.|+..|+.+.+.+|+.+|...+...|..|.+.+.+|-+.|+.++|+.|.+..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            35667777777777777777777777777777773334667777777777777777777777666653

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.74  E-value=6.7e-05  Score=65.85  Aligned_cols=69  Identities=22%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCC-CCccccccCCChHHHHHHHcCCHHHHHHHHhcCcc
Q 037778           29 EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEP-GDLAQENNVGYTALFFAAASGMVELAREIMTHNKA  100 (575)
Q Consensus        29 ~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~-~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~  100 (575)
                      +.++|.+ |..|+|||++|+..|+.+.|.+|+.+  | +.+...|..|.+++.+|-+.|..+++..|-+...+
T Consensus         2 e~~in~r-D~fgWTalmcaa~eg~~eavsyllgr--g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINAR-DAFGWTALMCAAMEGSNEAVSYLLGR--GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccch-hhhcchHHHHHhhhcchhHHHHHhcc--CcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3567887 99999999999999999999999999  7 88999999999999999999999999999987655

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.69  E-value=2.6e-05  Score=85.70  Aligned_cols=84  Identities=23%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhh
Q 037778          240 PELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAM  319 (575)
Q Consensus       240 ~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~  319 (575)
                      .++||.|+..|..-+++.|++++++ ++..|..|+||+|.+...|+......++++|++.+.    -|.+|++||++|..
T Consensus       657 ~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a----~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  657 CSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA----FDPDGKLPLDIAME  731 (785)
T ss_pred             cchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccccccc----cCccCcchhhHHhh
Confidence            4999999999999999999999999 999999999999999999999999999999999865    89999999999988


Q ss_pred             CCCCCcccc
Q 037778          320 LPPQDRLNI  328 (575)
Q Consensus       320 ~~~~~~~~~  328 (575)
                      ..+.+++.+
T Consensus       732 ~~~~d~~~l  740 (785)
T KOG0521|consen  732 AANADIVLL  740 (785)
T ss_pred             hccccHHHH
Confidence            866565443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.58  E-value=0.00024  Score=68.80  Aligned_cols=72  Identities=24%  Similarity=0.238  Sum_probs=52.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHH
Q 037778           76 YTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTL  148 (575)
Q Consensus        76 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a  148 (575)
                      .--|..||+.|+.+.|+.|++.|.++ |..|....+||++|+..||.++|++|+++|+ -.....+|...+.-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            34577888888888888888888776 7888888888888888888888888888887 333344555444333

>smart00248 ANK ankyrin repeats

Probab=96.09  E-value=0.0092  Score=35.11  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=11.4

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQR   62 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~   62 (575)
                      |.||+|+|+..|+.++++.|++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            34455555555555555555544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.93  E-value=0.01  Score=34.88  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCcc
Q 037778           74 VGYTALFFAAASGMVELAREIMTHNKA  100 (575)
Q Consensus        74 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~  100 (575)
                      .|.||+|+|+..++.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            366777777777777777777777654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.30  E-value=0.02  Score=57.95  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=51.3

Q ss_pred             CCHHHHHHHHHcCCCCCc------cccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHH
Q 037778           51 KQYGFVKELVQRMEPGDL------AQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDM  124 (575)
Q Consensus        51 g~~~~v~~Ll~~~~~~~l------~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  124 (575)
                      .-.+.+++|.+.  +.+.      ...+..--|+||+|+..|..++|.++|+.+.+ +...|..|.||..++.   +.|+
T Consensus       402 ~~p~~ie~lken--~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~---nkdV  475 (591)
T KOG2505|consen  402 PEPDSIEALKEN--LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA---NKDV  475 (591)
T ss_pred             CchhHHHHHHhc--CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc---cHHH
Confidence            336777787776  3332      22233356889999999999999999998877 4888889999988876   4444


Q ss_pred             HHHHH
Q 037778          125 VVYLY  129 (575)
Q Consensus       125 v~~Ll  129 (575)
                      -..++
T Consensus       476 k~~F~  480 (591)
T KOG2505|consen  476 KSIFI  480 (591)
T ss_pred             HHHHH
Confidence            44443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.03  E-value=0.031  Score=56.67  Aligned_cols=40  Identities=23%  Similarity=0.203  Sum_probs=24.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHH
Q 037778          241 ELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAV  281 (575)
Q Consensus       241 tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~  281 (575)
                      |+||+|+..|.-+.|.++|+.++| +...|..|+||..++.
T Consensus       432 T~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  432 TFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            566666666666666666666655 4555666666655554

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.55  E-value=0.56  Score=41.75  Aligned_cols=47  Identities=19%  Similarity=0.270  Sum_probs=40.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778          241 ELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ  294 (575)
Q Consensus       241 tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  294 (575)
                      .-|..|+..|-..++.+.+++|.+ ++      .++|-.|+++++.+++.+++.
T Consensus       145 ~hl~~a~~kgll~F~letlkygg~-~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  145 QHLEKAAAKGLLPFVLETLKYGGN-VD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCc-cc------HHHHHHHHHhhHHHHHHHhhc
Confidence            567889999999999999999988 32      289999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.94  E-value=0.5  Score=43.32  Aligned_cols=114  Identities=9%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccC----CChHHHHHH
Q 037778            8 KLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNV----GYTALFFAA   83 (575)
Q Consensus         8 ~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~----g~TpLh~Aa   83 (575)
                      .|-.|+...+.+.+..++...         .+-.++|-+|..++..+++.+|+...   ....+|.-    +.--+.++.
T Consensus       156 sledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f---~ft~~dv~~~~~~~ydieY~L  223 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKF---NFTKQDVASMEKELYDIEYLL  223 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhc---ceecchhhhcCcchhhHHHHH
Confidence            355677777777666655421         22357888888888888888888764   22222211    112233333


Q ss_pred             --HcCCHHHHHHHHhcCccc---cccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           84 --ASGMVELAREIMTHNKAI---ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        84 --~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                        -+.+..+.+..+++|---   ...+-+.|.|-|.-|..+++.+|+..|+++|+
T Consensus       224 S~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  224 SEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             hhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence              234666777777776422   22455678888888888888888888888877

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.35  E-value=0.67  Score=42.55  Aligned_cols=27  Identities=19%  Similarity=0.426  Sum_probs=15.3

Q ss_pred             CCCCchHHHHHHcCChhHHHHHHhcCc
Q 037778          271 ENGYTIFHTAVLHRRKRIFKLIYQIGA  297 (575)
Q Consensus       271 ~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  297 (575)
                      +.|.|.|.-|+++++.+++.+|+++|+
T Consensus       252 NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  252 NSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            445555555555555555555555555

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.17  E-value=3.7  Score=36.72  Aligned_cols=136  Identities=13%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHH
Q 037778           79 LFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVAL  158 (575)
Q Consensus        79 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  158 (575)
                      |.-|+..+...+.+..-+...+    .-..+++-...||+..+.|+|+|+-+.-.    -.+-.+.+..|+...+.++..
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~----~~~~~q~LFElAC~~qkydiV~WI~qnL~----i~~~~~iFdIA~~~kDlsLys  121 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLEN----ERYLNQELFELACEEQKYDIVKWIGQNLH----IYNPEDIFDIAFAKKDLSLYS  121 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhc----chhHHHHHHHHHHHHccccHHHHHhhccC----CCCchhhhhhhhhccchhHHH
Confidence            3445566666665554443211    01234556666666666777776644322    222334455555555544311


Q ss_pred             ---H-HHHhhhccccccccCC--CCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778          159 ---R-VFEDLHEKSAIGRAAN--EETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       159 ---~-Ll~~~~~~~~~~~d~~--g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~  232 (575)
                         . ++++  ...-...|..  -..-|..|+.+|                          ....+...++.|.+++   
T Consensus       122 lGY~l~~~~--~~~~~~~d~~~ll~~hl~~a~~kg--------------------------ll~F~letlkygg~~~---  170 (192)
T PF03158_consen  122 LGYKLLFNR--MMSEHNEDPTSLLTQHLEKAAAKG--------------------------LLPFVLETLKYGGNVD---  170 (192)
T ss_pred             HHHHHHHhh--cccccccCHHHHHHHHHHHHHHCC--------------------------CHHHHHHHHHcCCccc---
Confidence               1 1111  0000000000  012366777777                          2444444455554332   


Q ss_pred             hhcccCCChHHHHHHHcCCHHHHHHHHH
Q 037778          233 ISNLIAEPELIFDAARQGNLEFLLILIR  260 (575)
Q Consensus       233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~  260 (575)
                             .+.|..|++.++..++..++.
T Consensus       171 -------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  171 -------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             -------HHHHHHHHHhhHHHHHHHhhc
Confidence                   189999999999999988864

These proteins may be involved in promoting survival of infected macrophages [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=89.23  E-value=11  Score=37.76  Aligned_cols=255  Identities=11%  Similarity=0.070  Sum_probs=138.5

Q ss_pred             CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCC-ccccccCCChHHHHHHHcCCHHHHHHHHhcC-cc-ccccCCCCCCcH
Q 037778           36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGD-LAQENNVGYTALFFAAASGMVELAREIMTHN-KA-IATEQDDKRVLP  112 (575)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~-l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~-~~-~~~~~~~~g~tp  112 (575)
                      .|..|.-.|..+...++.+..+.+++...+.- --..|..|+-.+.-....+..+-...+++.- ++ ..-..+..|.-.
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v   96 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV   96 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence            36667777777777777776666665531111 1234566776666666666555433333321 11 112456667666


Q ss_pred             HHHHHHcCChHHHHHHHhccc----cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccc-cccCCCCcHHHHHHhcC
Q 037778          113 IDLAASLGHEDMVVYLYGQTK----NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAI-GRAANEETALHALARKN  187 (575)
Q Consensus       113 L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~-~~d~~g~tpLh~a~~~~  187 (575)
                      +.-+...+..+-...+++.-.    .-..|..|...+..+......+..+.+++...+.... ..+..|...+.......
T Consensus        97 lqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~  176 (322)
T cd07920          97 IQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHC  176 (322)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhC
Confidence            666666665544444443321    3346777777777777766666655555442111111 23555666555555433


Q ss_pred             CCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHH----HHHHHHCC
Q 037778          188 LNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFL----LILIREYP  263 (575)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv----~~Ll~~~~  263 (575)
                      .                      .....++++.+.+....+-.     +..|...+..+.+.+..+..    +.+..+..
T Consensus       177 ~----------------------~~~~~~l~~~l~~~~~~L~~-----d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~  229 (322)
T cd07920         177 S----------------------EEQREPLLEEILEHALELVQ-----DQFGNYVVQHVLELGDPDDTSRIIEKLLGNIV  229 (322)
T ss_pred             C----------------------HHHHHHHHHHHHHHHHHHhc-----CCchhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            1                      11123344444443322211     22333677777777765544    44443333


Q ss_pred             CccccccCCCCchHHHHHHcCChh----HHHHHHhcC----cchhhhhhcccCCCCcHHHHHhhCCC
Q 037778          264 DLIWNIDENGYTIFHTAVLHRRKR----IFKLIYQIG----AAKDLILKFEDPKKNNILHLAAMLPP  322 (575)
Q Consensus       264 d~~~~~d~~G~t~Lh~A~~~~~~~----iv~~Ll~~~----~~~~~l~~~~d~~G~T~LHlAa~~~~  322 (575)
                      .+  ..++.|...+..+...+..+    +++-++...    .-..+   ..|..||-.+..+....+
T Consensus       230 ~l--~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l---~~d~~Gn~Viq~~l~~~~  291 (322)
T cd07920         230 QL--SCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTL---MKDQYGNYVIQTALDVAK  291 (322)
T ss_pred             HH--HcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHH---hCCCcccHHHHHHHHhCC
Confidence            32  56788999999888887543    444444432    11222   388999998888887766

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.03  E-value=0.74  Score=35.14  Aligned_cols=47  Identities=15%  Similarity=0.185  Sum_probs=30.3

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhc
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTH   97 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~   97 (575)
                      ..+..|+..|+.|+++.+++.  + .++      ...+..|+...+.+++++|+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~--~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKK--N-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHH--h-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            456777777777777777754  1 111      3457777777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=88.44  E-value=29  Score=34.69  Aligned_cols=265  Identities=8%  Similarity=0.001  Sum_probs=154.4

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhh-CCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCc-cccccCCChHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDV-HEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL-AQENNVGYTALF   80 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~-~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l-~~~d~~g~TpLh   80 (575)
                      +.|.-.|..+...++.+....++++ .|.....-.|..|+-.+-.....+..+-...+++...|.-. =..|..|.-.+.
T Consensus        19 ~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlq   98 (322)
T cd07920          19 QHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQ   98 (322)
T ss_pred             chhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHH
Confidence            3555667778888888888777775 22223333478888888888888888877766665422111 235677877777


Q ss_pred             HHHHcCCHHHHHHHHhcC-cc-ccccCCCCCCcHHHHHHHcCChHHHHHHHhccc----cccCcCchhhHHHHHHHhCcH
Q 037778           81 FAAASGMVELAREIMTHN-KA-IATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK----NSLNDEDRSHLLVTLIQTDLY  154 (575)
Q Consensus        81 ~Aa~~g~~~iv~~Ll~~~-~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~~  154 (575)
                      -+...+..+....+++.- +. ..-..|..|...+..+...+..+..+.+++.-.    .-..+..|...+..++.....
T Consensus        99 kll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~  178 (322)
T cd07920          99 KLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSE  178 (322)
T ss_pred             HHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCH
Confidence            777766654444333321 11 113567888888888888777776666655432    333677888888888776555


Q ss_pred             HHHHHHHHhhhc-cccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhh
Q 037778          155 DVALRVFEDLHE-KSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRI  233 (575)
Q Consensus       155 ~~~~~Ll~~~~~-~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~  233 (575)
                      +..+.+++...+ ...-..|..|+.-+..+...+.                      ......+++.+.+.-..+..   
T Consensus       179 ~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~----------------------~~~~~~i~~~l~~~~~~l~~---  233 (322)
T cd07920         179 EQREPLLEEILEHALELVQDQFGNYVVQHVLELGD----------------------PDDTSRIIEKLLGNIVQLSC---  233 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCC----------------------HHHHHHHHHHHHHHHHHHHc---
Confidence            444444332101 1112457788888888777662                      01123344444433322211   


Q ss_pred             hcccCCChHHHHHHHcCC----HHHHHHHHHHCC---Ccc-ccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778          234 SNLIAEPELIFDAARQGN----LEFLLILIREYP---DLI-WNIDENGYTIFHTAVLHRRKRIFKLIYQ  294 (575)
Q Consensus       234 ~~~~~~~tpLh~Aa~~g~----~~iv~~Ll~~~~---d~~-~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  294 (575)
                        +..|...+..+...+.    ..+++.++....   .+. -..|..|+-.+..+.........+.++.
T Consensus       234 --~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~  300 (322)
T cd07920         234 --HKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVE  300 (322)
T ss_pred             --CcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHH
Confidence              1223356666666665    345555554331   111 1468889999988888777655555443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.44  E-value=0.93  Score=34.56  Aligned_cols=49  Identities=14%  Similarity=0.137  Sum_probs=36.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778           76 YTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT  132 (575)
Q Consensus        76 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  132 (575)
                      ...+..|+..|+.|+++.+++.+ ..       ....+..|+...+-+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~-------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP-------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc-------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            35678888888999888888654 21       134788888888888888888864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	575
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-04

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 66  GDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMV 125
            D+   +N GYT L  AA++G +E+  E++  N A     D   + P+ LAA+ GH ++V
Sbjct: 38  ADVNATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIV 96
Query: 126 VYL--YGQTKNSLNDEDRS--HLLVTLIQTDLYDVALRVFEDLHEKSAIGRAA 174
             L  +G   N+ +++  +  HL       ++ +V L+   D++ +   G+ A
Sbjct: 97  EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	575
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-09
2pnn_A	273	Transient receptor potential cation channel subfa	5e-09
2pnn_A	273	Transient receptor potential cation channel subfa	3e-05
2pnn_A	273	Transient receptor potential cation channel subfa	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
2rfa_A	232	Transient receptor potential cation channel subfa	7e-05
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
2rfa_A	232	Transient receptor potential cation channel subfa	5e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-04

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 20/180 (11%)

Query: 27  VHEGEIRAPISKRKDTALHIAAAAKQYGF---VKELVQRMEPGDLAQENNVGYTALFFAA 83
           +   EI   I      A  +AA   + G    +  L +      +A      Y A   AA
Sbjct: 115 LTSDEIVKVIQAENYQAFRLAA---ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 171

Query: 84  ASGMVELAREIMTH--NKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQ----TKNSLN 137
            +G + +   +      +A A  Q +        A   GH +++ +L           ++
Sbjct: 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 231

Query: 138 DEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIG--------RAANEETALHALARKNLN 189
           + +     V        +    + +     +  G                L  L R+N  
Sbjct: 232 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE 291

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 34/228 (14%), Positives = 58/228 (25%), Gaps = 49/228 (21%)

Query: 9   LYRAALTGDWAVARGIYDV--HEGEIRAPISKRKD----TALHIAAAAKQYGF---VKEL 59
           ++ A    +      +        +       +      T L  A      G    +  L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 60  VQRMEPGDLAQ---------ENNVGYTALFFAAASGMVELAR-------EIMTHNKAIAT 103
           +      D  +             G TAL  A     + L         ++         
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 104 EQDDKRVL------PIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS-----HLLV---- 146
           ++   R        P+ LAA      +V +L         ++  D       H LV    
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196

Query: 147 -----TLIQTDLYDVALRVFEDLHEKSAIGRAANEE--TALHALARKN 187
                T   T +Y+  L +   LH    +    N +  T L   A   
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 42  TALHIAAAAKQYGFVKELVQR-MEPGDLAQENNVGYTALFFAAASG-----MVELAREIM 95
             L +AA   Q   VK L+Q   +P D++  ++VG T L              +    + 
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 96  T----------HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL-----YGQT 132
                          +    + K + P+ LAAS G   ++ Y+     +   
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE 261

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 28/132 (21%), Positives = 40/132 (30%), Gaps = 27/132 (20%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKD---TALHIAA------------AAKQY 53
           L  AA T   A+ +  + +      A IS R     T LH                   Y
Sbjct: 152 LSLAACTNQLAIVK--FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 54  GFVKELVQRMEPGDLAQE--NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVL 111
             +  L  ++ P    +E  N  G T L  AA+SG + +   I+                
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE-------- 261

Query: 112 PIDLAASLGHED 123
               AA   H  
Sbjct: 262 CRHAAAHHHHHH 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 8e-09
 Identities = 75/474 (15%), Positives = 146/474 (30%), Gaps = 143/474 (30%)

Query: 177 ETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSD--SRIS 234
           ET  H    K++  S F   +   F   KD+++  +  L   +   + +++  D  S   
Sbjct: 10  ETGEHQYQYKDI-LSVFEDAFVDNF-DCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTL 65

Query: 235 NLI----AEPELI----FDAARQGNLEFLLILIR--------------EYPDLIWNIDEN 272
            L     ++ E +     +   + N +FL+  I+              E  D ++N D  
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQ 124

Query: 273 GYTIFHTAVLHRRKRIFKL---IYQIGAAKDLIL-------------------KFEDPKK 310
            +  ++   + R +   KL   + ++  AK++++                   K +    
Sbjct: 125 VFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 311 NNI--LHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRAL 368
             I  L+L     P+  L ++     Q+        +    ++ R    + E  L  R L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LR-RLL 238

Query: 369 FTRKHENLREQGEKWMKDTATSCMLVATLIATVVFAAAFTVPGGNKGDTGFPFFLEKVS- 427
            ++ +EN               C+LV                            L  V  
Sbjct: 239 KSKPYEN---------------CLLV----------------------------LLNVQN 255

Query: 428 ---FKIFAISEAISLVSSSASIVNFLSILTSRY----------TEKDFLRLLPKKLLIGL 474
              +  F +S  I L +    + +FLS  T+ +          T  +   LL K L    
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 475 ATL---FVSIAAMMVVFSAAFFIVFKDSRL--WVAI----LVTVI-ASIPVIMFIVQHCQ 524
             L    ++     +   A             W  +    L T+I +S+ V         
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNV--------- 365

Query: 525 LLCDVVRSTYVSNSLFQRD-KIS------LFHKEDEASERQRMTKLCNGRLAIQ 571
           L     R  +   S+F     I       ++    ++     + KL    L  +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 65/408 (15%), Positives = 116/408 (28%), Gaps = 109/408 (26%)

Query: 3   RRRRL---KLYRAALTGDWAVARGIYDVHEGE---IRAPI---SKRKDTALHIAAAAKQY 53
             RRL   K Y   L     V   + +        +   I   ++ K     ++AA   +
Sbjct: 233 ELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 54  GFVKELVQRMEPGDLAQENNVGYTALFFAAASGMV--ELAREIMTHNKAIATEQDDKRVL 111
             +      + P ++                      +L RE++T N             
Sbjct: 289 ISLDHHSMTLTPDEVKS---------LLLKYLDCRPQDLPREVLTTNP-----------R 328

Query: 112 PIDLAASLGHEDMVV---YLYGQT-------KNSLN----DEDR---------------- 141
            + + A    + +     + +          ++SLN     E R                
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 142 SHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEET-ALHALARKNLNYSHFTKQYQRG 200
           + LL  +    +    + V   LH+ S + +   E T ++ ++      Y     +    
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI------YLELKVK---- 438

Query: 201 FFSAKDIENKRQKALKLVQR--------LWEKVVLLSDSRISNLI------AEPELIFDA 246
                 +EN+      +V            + +    D    + I       E       
Sbjct: 439 ------LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 247 ARQG--NLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILK 304
            R    +  FL   IR +    WN   +          + +  I     +     + IL 
Sbjct: 493 FRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILD 550

Query: 305 FEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQR 352
           F  PK    L  +      D L I    AL  + E + FEE  K VQR
Sbjct: 551 FL-PKIEENLICS---KYTDLLRI----ALMAEDEAI-FEEAHKQVQR 589

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 49/301 (16%), Positives = 97/301 (32%), Gaps = 86/301 (28%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
                 +H+AA   Q   V+ L++    G     +N  G TAL  A   G V+ A+ + +
Sbjct: 18  DENMEKIHVAARKGQTDEVRRLIET---GVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLIQTDLY 154
               + +    ++  PI LA      D+VV L    + +                Q    
Sbjct: 75  VG-EVHSLWHGQK--PIHLAVMANKTDLVVALVEGAKERG---------------QMPES 116

Query: 155 DVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKA 214
            +      +++E  +  +    +TALH        Y                        
Sbjct: 117 LLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEY------------------------ 152

Query: 215 LKLVQRLWEKVVLLSDSRISNLIAEPE---------LIFDAARQGNLEFLLILIREYPDL 265
           L++++      +L+         A P          L+  A    N E L +++   P  
Sbjct: 153 LEMIK------ILVQLG------ASPTAKDKADETPLMR-AMEFRNREALDLMMDTVPSK 199

Query: 266 ----IWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNI----LHLA 317
               +   ++ G +  H A+L   + +     ++G   +         ++N     L+L+
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN--------MEDNEHTVPLYLS 251

Query: 318 A 318
            
Sbjct: 252 V 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 16/100 (16%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAR-------- 92
           + LH A            V+    G D+  E+N     L+ +  + MV L +        
Sbjct: 213 SHLHWAILINWEDVAMRFVEM---GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269

Query: 93  ----EIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
                   HN           +  +  AA    ++++  L
Sbjct: 270 FLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG---DLAQENNVGYTALFFAAASGMVELAREIMTHN 98
           T L  A   +    +  ++  +       L   N  G + L +A      ++A   +   
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM- 233

Query: 99  KAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSH 143
                 +D++  +P+ L+       +   L  +T   L      H
Sbjct: 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 25/190 (13%)

Query: 18  WAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGF--VKELVQRMEPG-DLAQENNV 74
                   +V+E         +  TALH            +K LVQ    G     ++  
Sbjct: 117 LLNECDEREVNEIGSHVK-HCKGQTALHWCVGLGPEYLEMIKILVQL---GASPTAKDKA 172

Query: 75  GYTALFFAAASGMVELAR----EIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL-- 128
             T L  A      E        + + +       + +    +  A  +  ED+ +    
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 129 YGQTKNSLNDEDRS---------HLLVT--LIQTDLYDVALRVFEDLHEKSAIGRAANEE 177
            G   N  ++E             +L+T  L+Q       ++     +  + +       
Sbjct: 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHNGTTVLPDRVVWL 291

Query: 178 TALHALARKN 187
             + A A  +
Sbjct: 292 DFVPAAADPS 301

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 10/98 (10%), Positives = 24/98 (24%), Gaps = 12/98 (12%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-----------DLAQENNVGYTALFFAAASGMVEL 90
             L+++  A      KEL+Q+ +              +  +  V    +  AA     E+
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305

Query: 91  AREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            + +            +                +    
Sbjct: 306 LQLLQEK-LDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 39/314 (12%), Positives = 78/314 (24%), Gaps = 93/314 (29%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTH 97
                 +H+A  A +   V  LV+             G             E+       
Sbjct: 82  WHGQKPIHLAVMANKTDLVVALVE--------GAKERGQMPESLLNECDEREVN------ 127

Query: 98  NKAIATEQDDKRVLPIDLAASLG--HEDMVVYL--YGQTKNSLNDEDRS---------HL 144
            +  +  +  K    +     LG  + +M+  L   G +  + +  D +         + 
Sbjct: 128 -EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 145 LVT--LIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK--------------NL 188
                ++ T     +L     L   +  G      + LH                   ++
Sbjct: 187 EALDLMMDTVPSKSSL----RLDYANKQGN-----SHLHWAILINWEDVAMRFVEMGIDV 237

Query: 189 NYSHFTKQYQRGFFSAKDIENKRQKALKL-VQRLWEKVV--LLSDSRISNLIAEPE---- 241
           N               +D  N+    L L V+     +   LL  + +  + A P     
Sbjct: 238 N--------------MED--NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT 281

Query: 242 --LIFD---------AARQGNLEFLLILIREYPDLIWNI-DENGYTIFHTAVLHRRKRIF 289
             L            AA     E L +L  +  ++        G              + 
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV--VRSLNTGAGGAVKRKKKAAPAVK 339

Query: 290 KLIYQIGA---AKD 300
           ++     A    + 
Sbjct: 340 RMKLAPSAPVRTRS 353

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 42/230 (18%), Positives = 68/230 (29%), Gaps = 48/230 (20%)

Query: 6   RLKLYRAALTGDWAVARGIYDV---HEGEIRAPISKRKD---TALHIAAAAKQYG---FV 56
           R +L+     G      G+ +    +   +            T L  A    Q G    +
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 57  KELVQRMEPGDLAQ---------ENNVGYTALFFAAASG---MVEL---------AREIM 95
             L+Q  +     +         E   G++AL  A        V+L          R   
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 96  THNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS-----HLLV-- 146
              +           LP+ LAA     D+V YL        SL   D       H LV  
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182

Query: 147 -------TLIQTDLYDVALRVFEDLHEKSAIGRAANEE--TALHALARKN 187
                  + +   +YD  L++   L     +   +N +  T L   A++ 
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 18/113 (15%)

Query: 33  RAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG-----------------DLAQENNVG 75
           +       +  L +AA  KQ+  V  L++                       +  +N+  
Sbjct: 129 QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 188

Query: 76  YTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            +AL      G++++   +      +    + + + P+ LAA  G  ++  ++
Sbjct: 189 NSALVIHMYDGLLQMGARLC-PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 41/226 (18%), Positives = 64/226 (28%), Gaps = 56/226 (24%)

Query: 18  WAVARGIYDVHEGEIRAPISKRKD-------------TALHIAAAAKQYG---FVKELVQ 61
             V+RG  D  EG +   ++ +K              T L  A      G    +  L+ 
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 62  RMEPGDLAQE---------NNVGYTALFFAAASGMVELAREIMTH-------NKAIATEQ 105
             E     +E            G TAL  A           ++          +    + 
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 106 DDKRVLPID------LAASLGHEDMVVYL--YGQTKNSLNDEDRS-----HLLV------ 146
            D+            LAA      +V YL   G  +  L  +D       H LV      
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 147 ---TLIQTDLYDVALRVFEDLHEKSAIGRAANEE--TALHALARKN 187
              T   T +YD+ L     L   + +    N +  + L   A+  
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 16/124 (12%)

Query: 21  ARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQR-MEPGDLAQENNVGYTAL 79
           A+      + +         +  L +AA   Q   V  L +   +  DL ++++ G T L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

Query: 80  FFAAASG---------MVELAREIMTHNKAIATEQDDKRVL------PIDLAASLGHEDM 124
               A           + ++   ++     +  + + + +L      P+ +AA  G   +
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

Query: 125 VVYL 128
             ++
Sbjct: 241 FQHI 244

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 33/143 (23%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           TAL+ A        V+ L    +P  +L Q+N +G TAL  AA  G  ++  +++    A
Sbjct: 108 TALYWACHGGHKDIVEMLFT--QPNIELNQQNKLGDTALHAAAWKGYADIV-QLLLAKGA 164

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLIQTDLYDVAL 158
               ++ ++ L  D+A +     ++         +   N ED           D  D   
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED---------YLDDED--- 212

Query: 159 RVFEDLHEKSAIGRAANEETALH 181
                          ++ E   H
Sbjct: 213 ---------------SDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 6   RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEP 65
           ++K++RA  T +         + EG+I   I+   DT      +       K     +  
Sbjct: 13  QVKVFRALYTFEPRTPD-ELYIEEGDIIY-ITDMSDTNWWKGTS-------KGRTGLIPS 63

Query: 66  GDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMV 125
             +A++       L  AA  G +   RE + + +      D      +  A   GH+D+V
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 126 VYL 128
             L
Sbjct: 123 EML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 18  WAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGY 76
              ++G   +      A  ++  D  LH AA      +++E +        +   +  G 
Sbjct: 51  KGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN---RVGVNGLDKAGS 107

Query: 77  TALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           TAL++A   G  ++   + T       +Q+      +  AA  G+ D+V  L
Sbjct: 108 TALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 37  SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMT 96
            K     +  A    +     EL    E GD+    ++  T  +   + G   L      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYI--EEGDIIYITDMSDTNWWKGTSKGRTGL------ 60

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
                  EQ +    P+  AA  G+   +   
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLREC 92

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
           K  DTALH AA       V+ L+ +   G      N     A   A  +    L ++   
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQG 194

Query: 97  HNKAIATEQDDKRVLPIDLAASLGH 121
            + A+ T  + +  L  + +    H
Sbjct: 195 TD-AVRTLSNAEDYLDDEDSDLEHH 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 28  HEGEIRAPISKRKD--TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS 85
               +           T  HIA +      VK L  R    DL +  N G T L  A   
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 86  GMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDR 141
              E++ + +  N A    +D    +P+  AAS+G   ++  L G  K+++N +D+
Sbjct: 118 KWFEVS-QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH+A   K +   + L++    G  +  ++      L  AA+ G ++L   +    K+
Sbjct: 109 TCLHLAVGKKWFEVSQFLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               QD +   P+  A + GH D  V L
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTH--NK 99
             LH A    ++  V+EL+   +P  L Q++  G   L ++ +    E+   +++   N 
Sbjct: 4   YPLHQACMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            +    DD    P  +A S+G+ ++V  L
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG--DLAQENNVGYTALFFAAASGMVELAREIM 95
           K     LH AA+      ++ L      G   +  ++  G+T LF A A G  + A  ++
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGL---GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194

Query: 96  THNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
               A     D+K     D+A    +E +  + 
Sbjct: 195 EKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 20/158 (12%)

Query: 38  KRKDTALHIAAAAKQYGF---VKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELARE 93
           +   TALH A      G    V+ L+Q    G  +  +++ G++ L  AA++G  E+ + 
Sbjct: 38  QDSRTALHWAC---SAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 94  IMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS--HLLVTLI 149
           ++     +    +     P+  AAS    ++ V L   G   ++ +  D +  H      
Sbjct: 92  LLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150

Query: 150 QTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187
              +  + L      + +   G      T LH    + 
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGN-----TPLHLACDEE 183

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 19/154 (12%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTH--N 98
           TALH A  A     VK LVQ    G ++   ++ G+T L  AA+   V++ + ++     
Sbjct: 72  TALHNAVCAGHTEIVKFLVQF---GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128

Query: 99  KAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVAL 158
               T  D +           G+     +LYG  +  +   ++           L+D   
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGV------IYALWDYEP 181

Query: 159 R-----VFEDLHEKSAIGRAANEETALHALARKN 187
           +       ++    + I R   +E      AR N
Sbjct: 182 QNDDELPMKEGDCMTIIHREDEDEIEWW-WARLN 214

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
            +L             E +     G   + N +    L  ++  G  +L + I+      
Sbjct: 7   VSLPPGKRTNLRKTGSERIAH---GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV-DD 62

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
            +  +D+ +  +  A   GH ++V +L
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFL 89

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 18/150 (12%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           TALH A        VK LV+    G ++ Q +N G+  L  AA+ G +++A E +    A
Sbjct: 75  TALHQACIDDNVDMVKFLVEN---GANINQPDNEGWIPLHAAASCGYLDIA-EYLISQGA 130

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRV 160
                + +   P+D+A     E+++     +    +    +        +  L D    +
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE-----RIMLRDARQWL 185

Query: 161 FE---DLHEKSAIGRAANEETALHALARKN 187
                +    +  G      TALH  A K 
Sbjct: 186 NSGHINDVRHAKSGG-----TALHVAAAKG 210

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           +AL +A+       V  L++R     D+   +  G T L +A     V+   E +    A
Sbjct: 71  SALSLASTGGYTDIVGLLLER---DVDINIYDWNGGTPLLYAVRGNHVKCV-EALLARGA 126

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
             T + D    P+DLA +LG+  +   +
Sbjct: 127 DLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 48.2 bits (116), Expect = 9e-07
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG--DLAQENNVGYTALFFAAASGMVELAREIMTHNK 99
            ++H  AA  +   +KE +++   G   + + +  G+T L +A+A G +E  R ++    
Sbjct: 4   LSIHQLAAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-G 59

Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           A       +R   + LA++ G+ D+V  L
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLL 88

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.9 bits (105), Expect = 3e-05
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 9   LYRAALTGDWAVAR-----GIYDVHEGEIRAPISKRKDTALHIAAAAKQYGF---VKELV 60
           +++ A  G+    +     G   V++        +R  T L  A+    +G    V+ L+
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKP------DERGFTPLIWAS---AFGEIETVRFLL 56

Query: 61  QRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL 119
           +    G D         +AL  A+  G  ++   ++  +       D     P+  A   
Sbjct: 57  EW---GADPHILAKERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRG 112

Query: 120 GHEDMVVYL 128
            H   V  L
Sbjct: 113 NHVKCVEAL 121

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 26  DVHEGEIRAPISKRKD--TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFA 82
            V         S++    TALH AA       VK LV   E G +  +++  G T +  A
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV--GEKGSNKDKQDEDGKTPIMLA 320

Query: 83  AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           A  G +E+    +    A     D        LA +  H ++V   
Sbjct: 321 AQEGRIEVV-MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 42  TALHIAAAAKQYGFVK--EL-------VQRMEPGDLAQENNVGYTALFFAAASGMVELAR 92
           TAL I A  +    V   +L       V          E   G TAL +AA    + + +
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296

Query: 93  EIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            ++    +   +QD+    PI LAA  G  ++V+YL
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 46/315 (14%), Positives = 84/315 (26%), Gaps = 86/315 (27%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
                 LH  AA   Y   + + +      ++    +   T L + A++   E + +++ 
Sbjct: 92  PESPIKLHTEAA-GSYAITEPITRE---SVNIIDPRH-NRTVLHWIASNSSAEKSEDLIV 146

Query: 97  HNKAIAT-------EQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVT 147
           H               D     P+ LA       +V YL   G      N  +R      
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER------ 200

Query: 148 LIQTDLYDVA----LRVFEDLHEKSAIGRAANE-----ETALHALARKNLNYSHFTKQY- 197
              + L+  A      +   +   + +     E      TAL  +A         + +  
Sbjct: 201 ---SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 198 ----------QRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAA 247
                           ++    K + AL                              AA
Sbjct: 258 VEKGAKVDYDGAARKDSEK--YKGRTALHY----------------------------AA 287

Query: 248 RQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFED 307
           +  N+  +  L+ E        DE+G T    A    R  +   + Q GA+ +       
Sbjct: 288 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE------- 340

Query: 308 PKKNNI----LHLAA 318
              +        LA 
Sbjct: 341 -AVDATDHTARQLAQ 354

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 41/303 (13%), Positives = 80/303 (26%), Gaps = 82/303 (27%)

Query: 34  APISKRKD--TALHIAAAAKQYGFVKELVQRMEPGDLAQ------ENNVGYTALFFAAAS 85
             I   +   T LH  A+       ++L+       +A        +    T L  A  +
Sbjct: 117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA 176

Query: 86  GMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL-----YGQTKNSLNDED 140
               L    +    A  T  +      +  AA+     M+VY+            L+   
Sbjct: 177 RRRRLV-AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235

Query: 141 RS---------HLLVTLIQTDLY----DVALRVFEDLHEKSAIGRAANEETALHALARKN 187
            +                   L      V          +   GR     TALH  A+ +
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR-----TALHYAAQVS 290

Query: 188 LNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE------ 241
               +              I                 V  L    +    +  +      
Sbjct: 291 ----N------------MPI-----------------VKYL----VGEKGSNKDKQDEDG 313

Query: 242 ---LIFDAARQGNLEFLLILIREYPDLIWNI-DENGYTIFHTAVLHRRKRIFKLIYQIGA 297
              ++  AA++G +E ++ LI++   +     D   +T    A  +    I  +  +   
Sbjct: 314 KTPIML-AAQEGRIEVVMYLIQQGASV--EAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

Query: 298 AKD 300
            ++
Sbjct: 371 ERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 39/329 (11%), Positives = 86/329 (26%), Gaps = 103/329 (31%)

Query: 66  GDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMV 125
               Q       +L  A+  G          + K    E     + P       G++ + 
Sbjct: 28  RKNHQSITSSQHSLLEASYDG----------YIKRQRNELQHYSLYPNPQGYGNGNDFLG 77

Query: 126 VYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVA---LRVFEDLHEKSA-IGRAANEETALH 181
            + +   +    + +            L+  A     + E +  +S  I    +  T LH
Sbjct: 78  DFNHTNLQI-PTEPEPES------PIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLH 130

Query: 182 ALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLI---A 238
            +A  +                     +             EK   L        I   A
Sbjct: 131 WIASNS---------------------SA------------EKSEDLIVHEAKECIAAGA 157

Query: 239 EPE---------LIFDAARQGNLEFLLILIREYPDLIWNI-DENGYTIFHTAVLHRRKRI 288
           +           L+  A        +  L++   D    I +++  +  H A  +R   +
Sbjct: 158 DVNAMDCDENTPLML-AVLARRRRLVAYLMKAGADP--TIYNKSERSALHQAAANRDFGM 214

Query: 289 FK-LI--YQIGAAKDLILKFEDPKKNNI----LHLAAMLPPQDRLNIVSGAALQMQRELL 341
              ++   ++    +        + +      L + A    +D++            +LL
Sbjct: 215 MVYMLNSTKLKGDIE--------ELDRNGMTALMIVAHNEGRDQVASA---------KLL 257

Query: 342 WFEEVEK-----AVQRRSAEAKNEDGLSP 365
               VEK            +++   G + 
Sbjct: 258 ----VEKGAKVDYDGAARKDSEKYKGRTA 282

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 41/321 (12%), Positives = 68/321 (21%), Gaps = 94/321 (29%)

Query: 18  WAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYT 77
            A   G       E+                                     +       
Sbjct: 43  EASYDGYIKRQRNEL----QHYSLYPNPQGYGNGNDFLGDFNHTN--LQIPTEPEPESPI 96

Query: 78  ALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLN 137
            L    A+G   +   I   +  I   + ++ VL     AS    +    L         
Sbjct: 97  KLHT-EAAGSYAITEPITRESVNIIDPRHNRTVLHW--IASNSSAEKSEDLI-------- 145

Query: 138 DEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQY 197
                H     I       A     D++         +E T L                 
Sbjct: 146 ----VHEAKECIAAG----A-----DVNAMD-----CDENTPLMLAVLAR----R----- 178

Query: 198 QRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE---------LIFDAAR 248
                  + +          V  L           +    A+P          L   AA 
Sbjct: 179 -------RRL----------VAYL-----------MKA-GADPTIYNKSERSALHQ-AAA 208

Query: 249 QGNLEFLLILIREYPDLIWNI---DENGYTIFHTAVLHRRK---RIFKLIYQIGAAKDLI 302
             +   ++ ++        +I   D NG T       +  +      KL+ + GA  D  
Sbjct: 209 NRDFGMMVYMLNSTKLKG-DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

Query: 303 LKFEDPKKNNI----LHLAAM 319
                  +       LH AA 
Sbjct: 268 GAARKDSEKYKGRTALHYAAQ 288

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 10/109 (9%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH+A+       VK L+Q      D+  +  +GY+ L  AA  G  ++   ++ +  A
Sbjct: 313 TPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-A 368

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL-----YGQTKNSLNDEDRSHL 144
              E       P+ +A  LG+  +   L             +    S  
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.3 bits (124), Expect = 5e-07
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 32/164 (19%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
            + +T LH+AA A      K L+Q       +  +     T L  AA  G   + + ++ 
Sbjct: 45  VKVETPLHMAARAGHTEVAKYLLQN---KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS---------HLL 145
           +N A           P+ +AA  GH + V+ L     ++  +  +  +          + 
Sbjct: 102 NN-ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160

Query: 146 VT--LIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187
           V   L++ D            +     G      T LH     N
Sbjct: 161 VAELLLERDA---------HPNAAGKNGL-----TPLHVAVHHN 190

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH+A+       VK L+QR   G      N    T L  AA +G  E+A+ ++ +  A
Sbjct: 16  TPLHVASFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-A 71

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               +      P+  AA +GH +MV  L
Sbjct: 72  KVNAKAKDDQTPLHCAARIGHTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 32/160 (20%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH+AA   +    + L++R             G T L  A     +++ + ++     
Sbjct: 148 TPLHVAAKYGKVRVAELLLER---DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-G 203

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS---------HLLVT-- 147
                      P+ +AA     ++   L  YG + N+ + +  +         H  +   
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263

Query: 148 LIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187
           L+             + +  +  G      T LH +A++ 
Sbjct: 264 LLSKQA---------NGNLGNKSGL-----TPLHLVAQEG 289

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 8e-06
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 37  SKRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIM 95
           +    T LHIAA       V  L+++       A     G+T L  AA  G V +A  ++
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEK---EASQACMTKKGFTPLHVAAKYGKVRVAELLL 166

Query: 96  THNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             + A         + P+ +A    + D+V  L
Sbjct: 167 ERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH+ A          L++    G  +     +GYT L  A+  G ++L + ++ H  A
Sbjct: 280 TPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-A 335

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               +      P+  AA  GH D+V  L
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 37  SKRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIM 95
           S +  T LH+AA       V  L+ +     +    N  G T L   A  G V +A  ++
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298

Query: 96  THNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            H   +          P+ +A+  G+  +V +L
Sbjct: 299 KHG-VMVDATTRMGYTPLHVASHYGNIKLVKFL 330

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.5 bits (117), Expect = 7e-07
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           +AL +A +      VK L+     G D+ + +  G T L +A     V+   +++  + A
Sbjct: 71  SALSLACSKGYTDIVKMLLDC---GVDVNEYDWNGGTPLLYAVHGNHVKCV-KMLLESGA 126

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
             T + D     +DLA +LG+  +   +
Sbjct: 127 DPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
            ++H  AA  +  ++   +++      +   +  G+T L +AAA G + +   ++ +  A
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQ---ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GA 60

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
                   R   + LA S G+ D+V  L
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKML 88

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.4 bits (96), Expect = 3e-04
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 42  TALHIAAAAKQYGF---VKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTH 97
           T L  AA    +G    V+ L+Q    G D         +AL  A + G  ++ + ++  
Sbjct: 38  TPLMWAA---AHGQIAVVEFLLQN---GADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91

Query: 98  NKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
                 E D     P+  A    H   V  L
Sbjct: 92  G-VDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 41  DTALHIAAAAKQYGFVKELVQR-MEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHN 98
             AL  A  +     V+ +    ++ G D+      G T L  A     + L + ++   
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 99  KAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
                + D      + LA  L  + +   L
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 51/299 (17%), Positives = 81/299 (27%), Gaps = 100/299 (33%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH A    +   V+ L++    G D       G T    AA +G V+L  ++     A
Sbjct: 41  TPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFLLAAIAGSVKLL-KLFLSKGA 96

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLIQTDLYDVAL 158
              E D         AA  G    + +L   G   N                        
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK------------------ 138

Query: 159 RVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLV 218
              ED       G      TAL   A K     H             ++          +
Sbjct: 139 ---EDQERLRKGGA-----TALMDAAEKG----H------------VEV----------L 164

Query: 219 QRLWEKVVLLSDSRISNLIAEPE---------LIFDAARQGNLEFLL----ILIREYPDL 265
           + L           +  + A+           LI  A    +   +     +L+    D+
Sbjct: 165 KIL-----------LDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADV 212

Query: 266 IWNI-DENGYTIFHTAVLHRRKRIFK-LIYQIGAAKDLILKFEDPKKNNI----LHLAA 318
             N+  E G T    AV  +   + + L+ Q     +          ++     L LA 
Sbjct: 213 --NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--------DTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 37  SKRKDTALHIAAAAKQYGFVKELVQRMEPG-DL-AQENNVGYTALFFAAASGMVELAREI 94
           +   +  L  A   +    V++L++    G ++  QE   G+T L  A      ++   +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEG---GANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 95  MTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           + H  A    +      P  LAA  G   ++   
Sbjct: 59  LRHG-ADPVLRKKNGATPFLLAAIAGSVKLLKLF 91

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH A        V+ L+Q       +        + L  AA +G V++  +++    A
Sbjct: 45  TPLHEACNHGHLKVVELLLQH---KALVNTTGYQNDSPLHDAAKNGHVDIV-KLLLSYGA 100

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
                +   + P+D       + +++  
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
            R +T LHIA+       V+ L+Q    G D   +++ G+T L  A   G +++   ++ 
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQN---GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           H KA+      +   P+  AA  GH D+V  L
Sbjct: 65  H-KALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
             LH A +   Y   + L++    G  +   +   +T L  AA+   VE+   +++H  A
Sbjct: 93  VPLHNACSYGHYEVTELLLKH---GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-A 148

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYLYGQT 132
             T  +      +D+A +    + + Y +   
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 2e-05
 Identities = 50/304 (16%), Positives = 95/304 (31%), Gaps = 91/304 (29%)

Query: 38  KRKDTALHIAAAAKQYGFVKE-LVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIM 95
           + K   L  AA +     +   L        +    +    T L  AA    V + + ++
Sbjct: 22  EYKKDELLEAARSGNEEKLMALLTPL---NVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78

Query: 96  THNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLIQTDL 153
            H  A    +D   ++P+  A S GH ++   L  +G   N+++             T L
Sbjct: 79  QH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF---------TPL 128

Query: 154 YDVA----LRVFE-------DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFF 202
           ++ A    + V         D    +  G+     +A+       L              
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGK-----SAVDMAPTPEL-------------- 169

Query: 203 SAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREY 262
                        + +   ++   LL                 AAR+ +L  +   +   
Sbjct: 170 ------------RERLTYEFKGHSLL----------------QAAREADLAKVKKTLALE 201

Query: 263 PDLIWNIDENGYTIFHTAVLH---RRKRIFKLIYQIGAAKDLILKFEDPKKNNI----LH 315
                   ++  T  H AV     +RK++ +L+ + GA  +        +KN      LH
Sbjct: 202 IINF-KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--------EKNKDFMTPLH 252

Query: 316 LAAM 319
           +AA 
Sbjct: 253 VAAE 256

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 51/297 (17%), Positives = 97/297 (32%), Gaps = 80/297 (26%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
            RK T LH+AA   +   V+ L+Q    G D+  ++  G   L  A + G  E+   ++ 
Sbjct: 56  GRKSTPLHLAAGYNRVRIVQLLLQH---GADVHAKDKGGLVPLHNACSYGHYEVTELLLK 112

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLIQTDLY 154
           H  A     D  +  P+  AAS    ++   L  +G     +N   +S + +     +L 
Sbjct: 113 HG-ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA-PTPELR 170

Query: 155 DVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKA 214
           +          +           + L A    +L                          
Sbjct: 171 ERL----TYEFKG---------HSLLQAAREADL-------------------------- 191

Query: 215 LKLVQRLWEKVVLLSDSRISNLIAEPE-----LIFDAARQG---NLEFLLILIREYPDLI 266
                    KV       I N   +P+     L   A         +   +L+R+  ++ 
Sbjct: 192 --------AKVKKTLALEIIN-FKQPQSHETALHC-AVASLHPKRKQVAELLLRKGANV- 240

Query: 267 WNI-DENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNI----LHLAA 318
            N  +++  T  H A       + +++++ GA  +          +++    LH AA
Sbjct: 241 -NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN--------ALDSLGQTALHRAA 288

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 15/166 (9%)

Query: 36  ISKRKDTALHIAAAAKQYGFVKELVQR-MEPGDLAQENNVGYTALFFAAASGMVELAREI 94
           +++  DTALH+A   +   F+  L+        L  +N++G TAL  AA  G      ++
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 95  MTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YG-QTKNSLNDEDRSHLLVTLIQT 151
                A     +      + LA  +        L           +D   +        T
Sbjct: 65  YAAG-AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 152 DLYDVALRVFEDLHEKSA---IGRAAN-------EETALHALARKN 187
                A+    +   +                    T LH      
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH+A  A+    ++ L++    G D       G T L  A       LA  ++  + A
Sbjct: 194 TPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILA-RLLRAHGA 249

Query: 101 IATEQDDKRVLPIDLAASLGHEDMV 125
              E    ++ P   + S    D  
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DL-AQENNVGYTALFFAAASGMVELAREIMTHNK 99
           T LH+A   K    V+ L      G DL   E   G T L  A  +    +  E++    
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDA---GADLNKPEPTCGRTPLHLAVEAQAASVL-ELLLKAG 215

Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           A  T +      P+  A    +  +   L
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLL 244

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 36  ISKRKDTALHIAAAAKQYGFVKELVQR-MEPG-DLAQENNVGYTALFFAAASGMVELARE 93
           +++  D+ LH+A   ++     E++++       L  +NN+  T L  A  +   E+A  
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 94  IMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           ++         +D +   P+ LA   G    V  L
Sbjct: 64  LLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVL 97

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 32/147 (21%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 9   LYRAALTGDWAVAR-----GIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRM 63
           L+ A   G  A                 ++A  +    T LH+A+     G V+ LV   
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKAT-NYNGHTCLHLASIHGYLGIVELLVSL- 139

Query: 64  EPG-DL-AQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH 121
             G D+ AQE   G TAL  A      +L   ++    A       +   P  L      
Sbjct: 140 --GADVNAQEPCNGRTALHLAVDLQNPDLV-SLLLKCGADVNRVTYQGYSPYQLTWGRPS 196

Query: 122 EDMVVYLYGQTKNSL----NDEDRSHL 144
             +   L   T  +L      ED    
Sbjct: 197 TRIQQQLGQLTLENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQR----MEPGDLAQENNVGYTALFFAAASGMVELARE 93
            R +T LH+A        V  L Q          L   N  G+T L  A+  G + +   
Sbjct: 76  FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135

Query: 94  IMTHNKAI-ATEQDDKRVLPIDLAASLGHEDMVVYL 128
           +++    + A E  + R   + LA  L + D+V  L
Sbjct: 136 LVSLGADVNAQEPCNGRT-ALHLAVDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTH--- 97
           T LH+A    Q    + L+     G D    +  G T L  A   G +     +      
Sbjct: 47  TPLHLAVITNQPEIAEALLGA---GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103

Query: 98  --NKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
               +I    +      + LA+  G+  +V  L
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DL-AQENNVGYTALFFAAASGMVELAREIMTHNK 99
           T LH AA   +   VK  + +   G  +     ++  T L +A   G + +  ++M +  
Sbjct: 44  TLLHWAAINNRIDLVKYYISK---GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG- 99

Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDR 141
           A  +  D +    I LAA  GH  +V YL   GQ  + ++    
Sbjct: 100 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM 143

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
             +  A     Y   +ELV+    G D+ Q +    T L +AA +  ++L +  ++    
Sbjct: 11  WDIVKATQYGIYERCRELVEA---GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
           +     D    P+  A   GH  MVV L
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQL 95

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 42  TALHIAAAAKQYGFVKELVQR-MEPG-DL-AQENNVGYTALFFAAASGMVELAREIMTHN 98
           T L  AA         +  +  +     +   +     TAL +A  +G   +   ++   
Sbjct: 144 TPLMWAA---YRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI-SLLLEA 199

Query: 99  KAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            A    Q+ K    +DLA    +  M+ +L
Sbjct: 200 GANVDAQNIKGESALDLAKQRKNVWMINHL 229

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 18/186 (9%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKD---TALHIAAAAKQYGFVKELVQRMEP 65
           L  AALTG+  V +    V E       S+  +   TALH A     Y  V  L+     
Sbjct: 25  LLDAALTGELEVVQ--QAVKEM---NDPSQPNEEGITALHNAICGANYSIVDFLITA--- 76

Query: 66  G-DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL--GHE 122
           G ++   ++ G+T L  AA+     +   ++ H  AI            +       G+ 
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA 136

Query: 123 DMVVYLYGQ-TKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALH 181
           D   YL        L +    + L         +++ R  E +       R   EET   
Sbjct: 137 DCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLR---RDGPEETDWW 193

Query: 182 ALARKN 187
             A   
Sbjct: 194 WAALHG 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 25/125 (20%), Positives = 36/125 (28%), Gaps = 11/125 (8%)

Query: 9   LYRAALTGDWAVARGIYDVHEG-EIRAPISKRKDTALHIAAAAKQYGF---VKELVQRME 64
           L+ AA   D  +      V  G  I A       TA       ++ G+      L    +
Sbjct: 91  LHCAASCNDTVICM--ALVQHGAAIFATTLSDGATAFEKCDPYRE-GYADCATYLADVEQ 147

Query: 65  PGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDM 124
              +   N+    AL+  +A    EL              +D         AA  G E  
Sbjct: 148 --SMGLMNSGAVYALWDYSAEFGDEL--SFREGESVTVLRRDGPEETDWWWAALHGQEGY 203

Query: 125 VVYLY 129
           V   Y
Sbjct: 204 VPRNY 208

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
           +  DT LH+AA+      V++L+Q      D+   N  G   L +A   G  ++A +++ 
Sbjct: 70  RGDDTPLHLAASHGHRDIVQKLLQY---KADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS 142
           +  A+ +  +    +P+D A +   E +       GQ  N +  +D  
Sbjct: 127 N-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
             +           V+  +      DL Q ++ G++ L +A   G   +  E++    A 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 64

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
               +     P+ LAAS GH D+V  L
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKL 91

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 9   LYRAALTGDWAVAR-----GIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRM 63
           ++     G+    R        D+++G+          + LH A    +   V+ L+ R 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGD------DHGFSPLHWACREGRSAVVEMLIMR- 61

Query: 64  EPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHE 122
             G  +   N    T L  AA+ G  ++ ++++ + KA     ++   +P+  A   G +
Sbjct: 62  --GARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQD 118

Query: 123 DMVVYL 128
            +   L
Sbjct: 119 QVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.7 bits (94), Expect = 7e-04
 Identities = 10/57 (17%), Positives = 18/57 (31%)

Query: 72  NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           +      +F     G     R  + + +    + DD    P+  A   G   +V  L
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 58

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           +ALH AAA         L++    G +   +NN   T LF AA  G  E A +++  + A
Sbjct: 159 SALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGSYETA-KVLLDHFA 214

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
                D    LP D+A    H D+V  L
Sbjct: 215 NRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T L +AA     G +++L+       D+   +++G +AL +AAA   V+ A  ++ +  A
Sbjct: 126 TPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-A 181

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               Q+++   P+ LAA  G  +    L
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 34  APISKRKD----TALHIAAAAKQYGFVKELVQR-MEPG-DLAQENNVGYTALFFAAASGM 87
           A +  + D    TALH+AA   +Y    +  +R +E   D   ++N+G T L  A ++  
Sbjct: 47  ASLHNQTDRTGETALHLAA---RYSR-SDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102

Query: 88  VELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             + + ++ +       +      P+ LAA L  E M+  L
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.0 bits (113), Expect = 4e-06
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T L +AA     G +++L+       D+   +++G +AL +AAA   V+ A  ++ +  A
Sbjct: 94  TPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-A 149

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               Q+++   P+ LAA  G  +    L
Sbjct: 150 NKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
           T LH A +A   G  + L++     DL    + G T L  AA   +  +  +++  + A 
Sbjct: 60  TPLHAAVSADAQGVFQILIRN-RATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-AD 117

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
               DD     +  AA++ + D  V L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 34  APISKRKD----TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMV 88
           A +  + D    TALH+AA   +    K L++      D   ++N+G T L  A ++   
Sbjct: 15  ASLHNQTDRTGETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQ 71

Query: 89  ELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            + + ++ +       +      P+ LAA L  E M+  L
Sbjct: 72  GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 9e-05
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           +ALH AAA         L++    G +   +NN   T LF AA  G  E A +++  + A
Sbjct: 127 SALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGSYETA-KVLLDHFA 182

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
                D    LP D+A    H D+V  L
Sbjct: 183 NRDITDHMDRLPRDIAQERMHHDIVRLL 210

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGF---VKELVQRMEP 65
           L  AA  GD    R +         A  ++   TAL +      +G      EL+++   
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM----FGSTAIALELLKQ--- 57

Query: 66  G-DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDM 124
           G     ++  G + +  AA +G ++   +++  + A     D    LPI LA   GH  +
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTL-KVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 125 VVYL 128
           V +L
Sbjct: 117 VSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           + +H AA       +K LV+    G D+   +  G   +  A   G   +   +     +
Sbjct: 70  SPVHDAARTGFLDTLKVLVEH---GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--S 124

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               +D + + P++LA   G +D+V  L
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.4 bits (101), Expect = 8e-05
 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
             L  AAA      V+ L+ R E       N  G TAL      G   +A E++    A 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQ-GAS 60

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
              QD     P+  AA  G  D +  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVL 87

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 9e-06
 Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 22/154 (14%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           + LH A        VK L++    G  +       +T LF A  SG  +    ++  + A
Sbjct: 94  SPLHEACLGGHLSCVKILLKH---GAQVNGVTADWHTPLFNACVSGSWDCV-NLLLQHGA 149

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLIQTDLYDVA- 157
               + D    PI  AA  GH + V  L  YG   +                T LY    
Sbjct: 150 SVQPESDLAS-PIHEAARRGHVECVNSLIAYGGNIDHKISHLG---------TPLYLACE 199

Query: 158 ---LRVFEDLHEKSA-IGRAANEETALHALARKN 187
                  + L E  A + +   +++ LHA+ R  
Sbjct: 200 NQQRACVKKLLESGADVNQGKGQDSPLHAVVRTA 233

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.6 bits (104), Expect = 8e-05
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
           T L++A   +Q   VK+L++    G    +     + L     +   ELA  +M    A 
Sbjct: 192 TPLYLACENQQRACVKKLLES---GADVNQGKGQDSPLHAVVRTASEELACLLMDF-GAD 247

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
              ++ +   P++L          ++L
Sbjct: 248 TQAKNAEGKRPVELVPPESPLA-QLFL 273

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 34  APISKRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAR 92
           + +       L  AA A Q   V+ L+     G D+A ++  G T L  AA +G +E+  
Sbjct: 18  SHMGSDLGKKLLEAARAGQDDEVRILMAN---GADVAAKDKNGSTPLHLAARNGHLEVV- 73

Query: 93  EIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           +++    A    QD       D++   G+ED+   L
Sbjct: 74  KLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
              D  L  AAA  Q   V++L++    G D    N  G   +      G  ++A  ++ 
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEA---GADPNALNRFGRRPIQV-MMMGSAQVAELLLL 65

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           H              P+  AA  G  D +V L
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 42  TALHIAAAAKQYGF---VKELVQRMEPG-DLAQENNVGYT-ALFFAAASGMVELAREIMT 96
             + +       G     + L+     G +    +    T  +  AA  G ++    ++ 
Sbjct: 47  RPIQVMM----MGSAQVAELLLLH---GAEPNCADPATLTRPVHDAAREGFLDTL-VVLH 98

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
              A     D    LP+DLA   GH D+  YL
Sbjct: 99  RAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
             LH AA +      + L+       DL   N  G + L  AA     +    +     +
Sbjct: 146 ICLHWAAFSGCVDIAEILLAA---KCDLHAVNIHGDSPLHIAARENRYDCV-VLFLSRDS 201

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
             T ++ +   P+  A+        + +
Sbjct: 202 DVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 3e-05
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
           + K + LH AA A        LVQ    G ++   +    T L  AA +  +E   + + 
Sbjct: 9   QNKRSPLHAAAEAGHVDICHMLVQA---GANIDTCSEDQRTPLMEAAENNHLEAV-KYLI 64

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
              A+   +D +    + LAA  GH ++V YL
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 31/160 (19%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T L  AA       VK L++    G  +  ++  G T L  AA  G  E+ + ++++ + 
Sbjct: 46  TPLMEAAENNHLEAVKYLIKA---GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS---------HLLVT-- 147
               QDD    P+  A    H D+V  L   G   N  ++E+            + +   
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162

Query: 148 LIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN 187
           L+             DLH  +  G      + LH  AR+N
Sbjct: 163 LLAAK----C-----DLHAVNIHGD-----SPLHIAAREN 188

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T +  A   K    VK L+ +   G D+   +N     L +AA SG V++A EI+   K 
Sbjct: 113 TPMIWATEYKHVDLVKLLLSK---GSDINIRDNEENICLHWAAFSGCVDIA-EILLAAKC 168

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
                +     P+ +AA     D VV  
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLF 196

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T L+IA         K L+ R   G D+  +N++  +   +A A G  E+   ++ H   
Sbjct: 41  TPLNIAVHNNDIEIAKALIDR---GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL--YGQT-KNSLNDEDRSHLLVTLIQTDLYDVA 157
              + +      +  AA  GH D V  L   G+   +  ND   + L+  +   +   + 
Sbjct: 98  DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157

Query: 158 LRVFE-------DLHEKSAIGRAANEETALHALARKN 187
             + +       D   K   GR     TA+    +K 
Sbjct: 158 QDIVKLLMENGADQSIKDNSGR-----TAMDYANQKG 189

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 41  DTALHIAAAAKQYGFVKELVQRMEPG--DLAQENNVGYTALFFAAASGMVELAREIMTHN 98
           D+    A A  +   +  +++       DL + N  G  AL  AA  G ++  + ++   
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129

Query: 99  KAIATEQDDKRVLPIDLAASL-----GHEDMVVYL 128
           +     Q+D     +  A  L      ++D+V  L
Sbjct: 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
           +     L  AAA  +   V+ L++    G +    N+ G   +      G   +A  ++ 
Sbjct: 10  EPSADWLATAAARGRVEEVRALLEA---GANPNAPNSYGRRPIQV-MMMGSARVAELLLL 65

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           H              P+  AA  G  D +V L
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 42  TALHIAAAAKQYG---FVKELVQRMEPG-DLAQENNVGYT-ALFFAAASGMVELAREIMT 96
             + +       G     + L+     G +    +    T  +  AA  G ++    ++ 
Sbjct: 47  RPIQVMM----MGSARVAELLLLH---GAEPNCADPATLTRPVHDAAREGFLDTL-VVLH 98

Query: 97  HNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
              A    +D    LP+DLA  LGH D+  YL
Sbjct: 99  RAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 42  TALHIAAAAKQYGFVKE---LVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHN 98
           TALH+A  +     +     LVQ    G+L ++   G TAL +   +   E   +++   
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGKGSTALHYCCLTDNAECL-KLLLRG 227

Query: 99  KAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLND 138
           KA     ++    P+D+A  L HE     L        N 
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 34  APISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELARE 93
           A  +   D  L  AA A     VK+L    +  +         T L FAA    V +  E
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVV-E 59

Query: 94  IMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
            +  + A    +D   ++P+  A S GH ++   L
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 3/88 (3%)

Query: 41  DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
            T+ + A        V   +          +  +  + +     +G V++   ++ +  +
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSE---IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
             T      +  I LA      +M+  L
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMT 96
              +  LH AA  +    VK L+     G D +Q ++ G TAL++A  SG ++  +  + 
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLFS---GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 97  HNKAIATEQDDK-RVLPIDLAASLGHEDMVVYLYGQTKNSLNDED 140
            N                  A  L    +V Y   +  ++ +   
Sbjct: 117 KN-WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI 160

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 9/108 (8%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DL-AQENNVGYTALFFAAASGMVELAREIMTHNK 99
           TAL+ A  +     VK  V++      L         T+ + A     V +    ++   
Sbjct: 97  TALYYAVDSGNMQTVKLFVKK---NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153

Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLL 145
           +            I +    GH DM++ L  Y  + N+ N       +
Sbjct: 154 STFDLAILLS--CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDI 199

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 21/154 (13%), Positives = 42/154 (27%), Gaps = 22/154 (14%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNV-GYTALFFAAASGMVELAREIMTHNKA 100
           +A + A A      V  L+     G  A +N +     L  AA     ++  +I+  +  
Sbjct: 33  SASYYAIADNNVRLVCTLLNA---G--ALKNLLENEFPLHQAATLEDTKIV-KILLFSGL 86

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLIQTDLYDVA- 157
             ++ DDK    +  A   G+   V                          +T  Y    
Sbjct: 87  DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW--------KTSFYHAVM 138

Query: 158 ---LRVFEDLHEKSAIGRAANE-ETALHALARKN 187
              + +      +           + +H   +  
Sbjct: 139 LNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNG 172

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 22/150 (14%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DL-AQENNVGYTALFFAAASGMVELAREIMTHNK 99
           TAL   A       V+ L +    G DL  ++   G TAL  AA     E+   ++    
Sbjct: 79  TALLFVAGLGSDKCVRLLAEA---GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG- 134

Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLIQTDLYDVA 157
           A    +D++ +  ++LA  +           +G+             ++ +++  +++ A
Sbjct: 135 ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK-------VINVLEGQVFEYA 187

Query: 158 LRVFEDLHEKSAIGRAANEETALHALARKN 187
                ++ EK   G     +   + +  K+
Sbjct: 188 EVD--EIVEKRGKG-----KDVEYLVRWKD 210

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 34  APISKRKDTALHIAAAAKQYG---FVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVE 89
            P+    D     A    + G    VK+ V +   G D+ +    G   L +AA  G +E
Sbjct: 1   GPLGSMCDKEFMWAL---KNGDLDEVKDYVAK---GEDVNRTLEGGRKPLHYAADCGQLE 54

Query: 90  LAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           +   ++    A     D   + P+  A   GH   V  L
Sbjct: 55  ILEFLLLKG-ADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.5 bits (91), Expect = 8e-04
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
             LH AA   Q   ++ L+ +   G D+   +    T L  A   G V   + +++   A
Sbjct: 42  KPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GA 97

Query: 101 IATEQDDKRVLPIDLAASLGHEDMV 125
             T +    +   +   +   + ++
Sbjct: 98  DKTVKGPDGLTAFEATDNQAIKALL 122

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 10/104 (9%), Positives = 26/104 (25%), Gaps = 16/104 (15%)

Query: 38  KRKDTALHIAAA------AKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASG---- 86
           K   T                    K  +++   G D+          +F    +     
Sbjct: 73  KEGTTLFFPLFQGGGNDITGTTELCKIFLEK---GADITALYKPYKIVVFKNIFNYFVDE 129

Query: 87  --MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             M+ L + I + +      +D   +  ++          +  +
Sbjct: 130 NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           + L  A        V+ L+Q    G ++  +   G +AL  A+  G++ L    +  + A
Sbjct: 152 SPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLV-RTLVRSGA 207

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
            ++ ++     P+ +A S    D++   
Sbjct: 208 DSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 9e-05
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPG--DLAQENNVGYTALFFAAASGMVELAREIM 95
           +  DT LHIA        V  LV   + G  +L   NN+  T L  A  + +  + R ++
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66

Query: 96  THNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           T   A     D        LA        +  L
Sbjct: 67  TA-GASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 42  TALHIAAAAKQYGFVKELVQR--MEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNK 99
           TA H+A   +    ++ L+        DL   N  G TAL  A  +   E  + ++    
Sbjct: 81  TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG- 139

Query: 100 AIATEQDDK-RVLPIDLAASLGHEDMVVYL 128
           A     D K    P+  A       MV  L
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 34  APISKRKD--TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVEL 90
           AP +      + LH+AA    +   + L++    G        V  T L  AA+ G   +
Sbjct: 26  APFTTDWLGTSPLHLAAQYGHFSTTEVLLRA---GVSRDARTKVDRTPLHMAASEGHANI 82

Query: 91  AREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             E++  + A    +D  ++  +  A    H+++V  L
Sbjct: 83  V-EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH+AA+      V+ L++    G D+  ++ +  TAL +A      E+  E++    A
Sbjct: 69  TPLHMAASEGHANIVEVLLKH---GADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGA 124

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               Q        D++   G+ED+   L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.4 bits (96), Expect = 3e-04
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
             L  AA A Q   V+ L+     G     +   G + L  AA  G      E++     
Sbjct: 4   KKLLEAARAGQDDEVRILMAN---GAPFTTDWL-GTSPLHLAAQYGHFSTT-EVLLRAGV 58

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               +      P+ +AAS GH ++V  L
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVL 86

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.7 bits (102), Expect = 6e-05
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T L +AA       V+ L++    G D+   +  G+T L  AA  G +E+  E++  N A
Sbjct: 82  TPLRLAALFGHLEIVEVLLKN---GADVNANDMEGHTPLHLAAMFGHLEIV-EVLLKNGA 137

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               QD       D++   G+ED+   L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
             L  AA A +   V+ L+     G D+  E+  G+T L  AA +G +E+   ++ +  A
Sbjct: 16  KKLLEAARAGRDDEVRILMAN---GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-A 71

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
                D   + P+ LAA  GH ++V  L
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVL 99

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 29/169 (17%)

Query: 41  DTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTH-- 97
           ++ L +AA       + +L+     G ++ Q   +G TAL  AA    +E A  +M    
Sbjct: 4   ESPLLLAAKENDVQALSKLL--KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 98  --NKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRSHLLVTLI---- 149
                  T +  +    + +A    + ++V  L   G + ++       H     +    
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 150 QTDLYDVA----LRVFE-------DLHEKSAIGRAANEETALHALARKN 187
           +  L   A      +         D+  + ++G      T LH L  + 
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-----TVLHILILQP 165

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIM----- 95
             L  AA       V+ L++    G D+  ++++G T L           A ++      
Sbjct: 123 HPLSFAACVGSEEIVRLLIEH---GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179

Query: 96  ----THNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
                H K++    +++ + P  LA   G+  M  +L
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 32/174 (18%)

Query: 42  TALHIAAAAKQYGFVKELVQR---MEPGDLAQENNVGYTALFFAAASGMVELAREIMTHN 98
           TALHIAA          L++    +    +  E   G TAL  A  +  V L    +   
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV-RALLAR 97

Query: 99  KAIATEQDDKRVLPID-------------LAASLGHEDMVVYL--YGQTKNSLNDEDRS- 142
            A  + +    V                  AA +G E++V  L  +G    + +    + 
Sbjct: 98  GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157

Query: 143 -HLLVTLIQTDLYDVALRVFE-------DLHEKSAIGRAANE-ETALHALARKN 187
            H+L+          A +++          H KS      N+  T       + 
Sbjct: 158 LHILI---LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQR-----------MEPGDLAQENNVGYTALFFAAASG 86
               TALHIA   +    V+ L+ R           +           G   L FAA  G
Sbjct: 73  YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132

Query: 87  MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLY 129
             E+   ++  + A    QD      + +     ++     +Y
Sbjct: 133 SEEIV-RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 42  TALHIAAAA---KQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHN 98
             LH+A           V  ++Q    G L  +   G TAL +AA     +   +++   
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNG--GHLDAKAADGNTALHYAALYNQPDCL-KLLLKG 248

Query: 99  KAIATEQDDKRVLPIDLAASLGHEDMV 125
           +A+    ++     +D+A    H++  
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECE 275

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 35/266 (13%), Positives = 77/266 (28%), Gaps = 51/266 (19%)

Query: 71  ENNVGYTALFFAAASGMVELAREIMTHNKA-IATEQDDKRVLPIDLAASLGHEDMVVYL- 128
           E           +   +++   +   + +  +    D+    P+    S+ + ++V +L 
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 129 -YGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDL--------HEKSAIGRAANEETA 179
            +G  +   ++   S L+  +   + YD     FE L          + ++ R     T 
Sbjct: 152 KHGSNRLYGDNMGESCLVKAVKSVNNYD--SGTFEALLDYLYPCLILEDSMNR-----TI 204

Query: 180 LHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAE 239
           LH +   +                   +      A   +  L   +V   +  I +   E
Sbjct: 205 LHHIIITSG------------------MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246

Query: 240 PELIFDAARQGNLEFLLILIREYPDLIWNI---DENGYTIFHTAVLHRRKRIFKLIYQIG 296
            E   +       + +L  +     +   +   D NG T  + A       I   +   G
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 297 AAKDLILKFEDPKKNNI----LHLAA 318
           A   +         N      +   A
Sbjct: 307 ADPFI--------ANKSGLRPVDFGA 324

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DL-AQENNVGYTALFFAAASGMVELAREIMTHNK 99
           TAL   A       V+ L +    G DL  ++   G TAL  AA     E+   ++    
Sbjct: 78  TALLFVAGLGSDKCVRLLAEA---GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG- 133

Query: 100 AIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           A    +D++ +  ++LA  +         
Sbjct: 134 ADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 7/100 (7%)

Query: 31  EIRAPISKRK--DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMV 88
           E+   I  R   + A+      K  G     V        A   +   T  + AA     
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWK-DGHSPSWVPSSYIA--ADVVSEYETPWWTAARKADE 57

Query: 89  ELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           +     +  ++ +    D+     +   A LG +  V  L
Sbjct: 58  QAL-SQLLEDRDV-DAVDENGRTALLFVAGLGSDKCVRLL 95

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 42  TALHIAAAAKQYG---FVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTH 97
           T LH AA   + G    VK+L+ +   G D+   +  G T L  AA +G  E+ + ++  
Sbjct: 11  TPLHNAA---KNGHAEEVKKLLSK---GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 98  NKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             A    +      P  LA   GH ++V  L
Sbjct: 65  G-ADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 42  TALHIAAAAKQYGF---VKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTH 97
           T LH+AA   + G    VK L++    G D+  ++  G T L  AA +G +E+ + ++  
Sbjct: 37  TPLHLAA---RNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

Query: 98  NKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             A    +D     P+ LAA  GH ++V  L
Sbjct: 91  -GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.0 bits (95), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T LH+AA       VK L++    G D+  ++  G T L  AA +G +E+ + ++    A
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-A 59

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               +D     P+ LAA  GH ++V  L
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 42  TALHIAAAAKQYGF---VKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTH 97
             +H AA   + GF   ++ L++      D+  E+N G   L  AA  G + +   ++ H
Sbjct: 72  AVIHDAA---RAGFLDTLQTLLEF---QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

Query: 98  NKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             +    ++ K     DLA   G  ++V  +
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.5 bits (91), Expect = 5e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 42  TALHIAAAAKQYG---FVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTH 97
           T LH+AA   + G    VK L++    G D+  ++  G T L  AA +G +E+  +++  
Sbjct: 4   TPLHLAA---RNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVV-KLLLE 56

Query: 98  NKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             A    +D     P+ LAA  GH ++V  L
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           T L++A A      V+ L++    G D+   + +G+T L  AA  G +E+A E++  + A
Sbjct: 49  TPLYLATAHGHLEIVEVLLKN---GADVNAVDAIGFTPLHLAAFIGHLEIA-EVLLKHGA 104

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYL 128
               QD       D++   G+ED+   L
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEIL 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	575
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-48  Score=408.75  Aligned_cols=350  Identities=16%  Similarity=0.151  Sum_probs=290.0

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      ...|.||||.|+..|+.++|+.|++. +.+++.. +..|.||||+|+..|+.++|++|++.  +.+++.+|.+|.||||+
T Consensus        11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   86 (437)
T 1n11_A           11 GESGLTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHC   86 (437)
T ss_dssp             ----CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHH
Confidence            45789999999999999999999984 8888887 88999999999999999999999999  89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      |+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+. ....+..|.||||.|+..|+.+++++|
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  165 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL  165 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999996 8899999999999999999999999999988 677888999999999999999999999


Q ss_pred             HHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhcc---------chhhhHhhHHH----HHHHHHHHHHhhh
Q 037778          161 FEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFS---------AKDIENKRQKA----LKLVQRLWEKVVL  227 (575)
Q Consensus       161 l~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~e~v~~L~~~~~~  227 (575)
                      +++  +.+++..+.+|.||||+|+..++      ...++.+++         ....++.|.++    .++++.|++.|.+
T Consensus       166 l~~--g~~~~~~~~~g~t~L~~A~~~~~------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  237 (437)
T 1n11_A          166 LER--DAHPNAAGKNGLTPLHVAVHHNN------LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS  237 (437)
T ss_dssp             HHT--TCCTTCCCSSCCCHHHHHHHTTC------HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HhC--CCCCCCCCCCCCCHHHHHHHcCC------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            997  88888999999999999999885      222222221         11233444433    6788888888887


Q ss_pred             CChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhccc
Q 037778          228 LSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFED  307 (575)
Q Consensus       228 ~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d  307 (575)
                      ++..+    ..+.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|+++|++++.    +|
T Consensus       238 ~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----~~  308 (437)
T 1n11_A          238 ANAES----VQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA----TT  308 (437)
T ss_dssp             TTCCC----TTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC----CC
T ss_pred             CCCCC----CCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC----CC
Confidence            77654    3345888888888888888888888888 678888888888888888888888888888887754    78


Q ss_pred             CCCCcHHHHHhhCCCCCcccccc-------------chhHhhHHHHHHHHHHHHhh-cccccccccCCCCChhHHHHHhh
Q 037778          308 PKKNNILHLAAMLPPQDRLNIVS-------------GAALQMQRELLWFEEVEKAV-QRRSAEAKNEDGLSPRALFTRKH  373 (575)
Q Consensus       308 ~~G~T~LHlAa~~~~~~~~~~l~-------------~~~l~~~~~l~w~~~v~~~~-~~~~~~~~n~~G~Tpl~~a~~~~  373 (575)
                      ..|+||||+|+..|+.+++++|.             .++++.+......+.|+.++ .|++++.+|.+|+||+++|.+..
T Consensus       309 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             SSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            88888888888888887776652             13566666666667777666 78889999999999999987643

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-48  Score=411.30  Aligned_cols=323  Identities=19%  Similarity=0.159  Sum_probs=235.7

Q ss_pred             CCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCC
Q 037778           28 HEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDD  107 (575)
Q Consensus        28 ~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~  107 (575)
                      .+.+++.. +..|.||||+|+..|+.++|++|+++  +.+++.+|..|.||||+|++.|+.+++++|++.++++ +.++.
T Consensus         3 ~g~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~   78 (437)
T 1n11_A            3 PGISGGGG-GESGLTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAK   78 (437)
T ss_dssp             -------------CCHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCT
T ss_pred             CCCCcccc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCC
Confidence            46677776 89999999999999999999999999  8999999999999999999999999999999999997 89999


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc
Q 037778          108 KRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK  186 (575)
Q Consensus       108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~  186 (575)
                      .|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++.  +...+..+..|.||||+|+..
T Consensus        79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~  156 (437)
T 1n11_A           79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKY  156 (437)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHc
Confidence            99999999999999999999999999 788999999999999999999999999997  777888899999999999999


Q ss_pred             CCCCcccchhhhhhhcc---------chhhhHhhHHH----HHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHH
Q 037778          187 NLNYSHFTKQYQRGFFS---------AKDIENKRQKA----LKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLE  253 (575)
Q Consensus       187 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~----~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~  253 (575)
                      |+      ...++.+++         ....++.|.++    .+++++|++.+.+++..+    ..+.||||.|+..|+.+
T Consensus       157 g~------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~  226 (437)
T 1n11_A          157 GK------VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA----WNGYTPLHIAAKQNQVE  226 (437)
T ss_dssp             TC------HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC----TTCCCHHHHHHHTTCHH
T ss_pred             CC------HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcC----CCCCCHHHHHHHcCCHH
Confidence            85      111111111         11122333322    456666666666555433    23347777777777777


Q ss_pred             HHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCcccccc---
Q 037778          254 FLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVS---  330 (575)
Q Consensus       254 iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~---  330 (575)
                      +++.|++.+++ ++..|..|+||||+|+..|+.+++++|++++++.+.    +|..|+||||+|+..++.+++++|.   
T Consensus       227 ~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  301 (437)
T 1n11_A          227 VARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL----GNKSGLTPLHLVAQEGHVPVADVLIKHG  301 (437)
T ss_dssp             HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            77777777766 566666777777777777777777777777666543    6677777777777776666554442   


Q ss_pred             ----------chhHhhHHHHHHHHHHHHhh-cccccccccCCCCChhHHHHH
Q 037778          331 ----------GAALQMQRELLWFEEVEKAV-QRRSAEAKNEDGLSPRALFTR  371 (575)
Q Consensus       331 ----------~~~l~~~~~l~w~~~v~~~~-~~~~~~~~n~~G~Tpl~~a~~  371 (575)
                                .++++.+......+.|+.++ .+++++.+|..|+||+++|.+
T Consensus       302 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~  353 (437)
T 1n11_A          302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ  353 (437)
T ss_dssp             CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence                      12455555545555555555 566666666667777766654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-43  Score=360.00  Aligned_cols=301  Identities=17%  Similarity=0.176  Sum_probs=216.0

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      ..+.++||.||..|+.+.++.++.+.+.+++.+ |..|.||||+|+..|+.++|++|+++  |.+++.+|..|.||||+|
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHH
Confidence            467899999999999999999999888888887 99999999999999999999999999  899999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      +..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++++ .+..+..|.++++.++..+..+......
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence            9999999999999999997 8899999999999999999999999999998 7888899999988877666555555444


Q ss_pred             HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778          162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE  241 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t  241 (575)
                      ..              +++..++..++                          .+.++.++.........    ...+.|
T Consensus       178 ~~--------------~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~----~~~~~t  213 (351)
T 3utm_A          178 KG--------------HSLLQAAREAD--------------------------LAKVKKTLALEIINFKQ----PQSHET  213 (351)
T ss_dssp             HH--------------HHHHHHHHTTC--------------------------HHHHHHHTTTCCTTCCC----TTTCCC
T ss_pred             cc--------------cHHHHHHHhcc--------------------------HHHHHHHHHhhcccccC----CCCCCC
Confidence            33              23333333331                          23333333222111111    122336


Q ss_pred             HHHHHHHc---CCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHh
Q 037778          242 LIFDAARQ---GNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA  318 (575)
Q Consensus       242 pLh~Aa~~---g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa  318 (575)
                      |||.|+..   ++.+++++|++.+++ ++.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+||||+|+
T Consensus       214 ~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~----~d~~g~t~L~~A~  288 (351)
T 3utm_A          214 ALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA----LDSLGQTALHRAA  288 (351)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHH
T ss_pred             HHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHH
Confidence            66666665   335566666666665 555566666666666666666666666666655533    5666666666666


Q ss_pred             hCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHHHhhHH
Q 037778          319 MLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRKHEN  375 (575)
Q Consensus       319 ~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~~~~~  375 (575)
                      ..++.+++++|                   +..|++++.+|.+|+||+++|.+...+
T Consensus       289 ~~~~~~~v~~L-------------------l~~gad~~~~~~~g~tal~~a~~~~~~  326 (351)
T 3utm_A          289 LAGHLQTCRLL-------------------LSYGSDPSIISLQGFTAAQMGNEAVQQ  326 (351)
T ss_dssp             HHTCHHHHHHH-------------------HHTTCCTTCCCTTSCCHHHHSCHHHHH
T ss_pred             HcCcHHHHHHH-------------------HHcCCCCCCcCCCCCChhhhhhHHHHH
Confidence            66655444433                   334555666666666666665444333

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8.6e-43  Score=353.73  Aligned_cols=285  Identities=16%  Similarity=0.153  Sum_probs=255.8

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      +|.|+||.|++.|+.++|+.||+. +++++.+.+..|.||||+|++.|+.++|++|+++  |++++.+|..+.+|++.++
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCchhHHHH
Confidence            578999999999999999999985 8999987455699999999999999999999999  9999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-ccc----------CcCchhhHHHHHHHhC
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSL----------NDEDRSHLLVTLIQTD  152 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~----------~~~~g~t~L~~a~~~~  152 (575)
                      ..++.++++.+++.++++ +..|..|.||||+|+..|+.+++++|++.++ .+.          .+..|.||||.|+..|
T Consensus       101 ~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             hcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence            999999999999999997 8999999999999999999999999999987 332          3567899999999999


Q ss_pred             cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778          153 LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       153 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~  232 (575)
                      +.++++.||++ .+.+++.+|..|.||+|.++..+.                      .....+++++|++.|++++..+
T Consensus       180 ~~~~v~~LL~~-~gad~n~~d~~g~t~l~~~~~~~~----------------------~~~~~~i~~lLl~~gad~n~~d  236 (337)
T 4g8k_A          180 HVEVLKILLDE-MGADVNACDNMGRNALIHALLSSD----------------------DSDVEAITHLLLDHGADVNVRG  236 (337)
T ss_dssp             CHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHHSC----------------------TTTHHHHHHHHHHTTCCTTCCC
T ss_pred             CHHHHHHHHhc-cCCCcCccCCCCCcHHHHHHHHcC----------------------cccHHHHHHHHHHCCCCCCCcC
Confidence            99999999987 799999999999999998886552                      1113568899999999998766


Q ss_pred             hhcccCCChHHHHHHHcCCHHHHHHHHHH-CCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCC
Q 037778          233 ISNLIAEPELIFDAARQGNLEFLLILIRE-YPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKN  311 (575)
Q Consensus       233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~-~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~  311 (575)
                          ..|.||||.|+..|+.++++.|++. +.+ ++.+|.+|+||||+|+++|+.+++++|+++|++++         +.
T Consensus       237 ----~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n---------~~  302 (337)
T 4g8k_A          237 ----ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD---------CG  302 (337)
T ss_dssp             ----GGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST---------TC
T ss_pred             ----CCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------CC
Confidence                3445999999999999999999986 667 89999999999999999999999999999998764         34


Q ss_pred             cHHHHHhhCCCCCccccc
Q 037778          312 NILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       312 T~LHlAa~~~~~~~~~~l  329 (575)
                      ||||+|++.++.++++.|
T Consensus       303 ~~L~~A~~~~~~~iv~~L  320 (337)
T 4g8k_A          303 DLVMTARRNYDHSLVKVL  320 (337)
T ss_dssp             CHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHH
Confidence            699999999998876665

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-42  Score=339.05  Aligned_cols=266  Identities=17%  Similarity=0.167  Sum_probs=244.7

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      +|.||||.|+..|+.++++.+++. +.+++...+..|.||||+|+..|+.+++++|+++  |.+++.+|.+|.||||+|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH
Confidence            688999999999999999999985 6778876678899999999999999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccC----------cCchhhHHHHHHHhC
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLN----------DEDRSHLLVTLIQTD  152 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~----------~~~g~t~L~~a~~~~  152 (575)
                      ..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.++ .+..          +..|.||||.|+..+
T Consensus        81 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            999999999999999996 8899999999999999999999999999988 4444          778999999999999


Q ss_pred             cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778          153 LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       153 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~  232 (575)
                      +.++++.|++. .+.+++.+|..|.||||+|+..++                      .....+++++|++.|++++..+
T Consensus       160 ~~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~----------------------~~~~~~i~~~Ll~~g~~~~~~~  216 (285)
T 1wdy_A          160 HVEVLKILLDE-MGADVNACDNMGRNALIHALLSSD----------------------DSDVEAITHLLLDHGADVNVRG  216 (285)
T ss_dssp             CHHHHHHHHHT-SCCCTTCCCTTSCCHHHHHHHCSC----------------------TTTHHHHHHHHHHTTCCSSCCC
T ss_pred             CHHHHHHHHHh-cCCCCCccCCCCCCHHHHHHHccc----------------------cchHHHHHHHHHHcCCCCCCcC
Confidence            99999999998 799999999999999999999883                      1112689999999999988765


Q ss_pred             hhcccCCChHHHHHHHcCCHHHHHHHHH-HCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhh
Q 037778          233 ISNLIAEPELIFDAARQGNLEFLLILIR-EYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDL  301 (575)
Q Consensus       233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~-~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  301 (575)
                          ..|.||||+|+..|+.+++++|++ .+.+ ++.+|.+|+||||+|+++|+.+++++|+++|++++.
T Consensus       217 ----~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          217 ----ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             ----TTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             ----CCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence                345599999999999999999999 7888 899999999999999999999999999999999865

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-40  Score=328.24  Aligned_cols=264  Identities=14%  Similarity=0.113  Sum_probs=240.7

Q ss_pred             CCCChHHhHHHHcCCHHHHHHHHHcCCCCCcccc-ccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQE-NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      .+|+||||.|++.|+.+++++|++.  +.+++.+ +..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            3578999999999999999999999  8898887 788999999999999999999999999996 88999999999999


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccc----------cCCCCcHHHHHHh
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGR----------AANEETALHALAR  185 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~----------d~~g~tpLh~a~~  185 (575)
                      +..|+.+++++|++.++ .+..+..|.||||.|+..++.+++++|++.  +..++.+          +..|.||||+|+.
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence            99999999999999998 788899999999999999999999999997  7776666          7889999999999


Q ss_pred             cCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHH-hhhCChhhhhcccCCChHHHHHHHcCC----HHHHHHHHH
Q 037778          186 KNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEK-VVLLSDSRISNLIAEPELIFDAARQGN----LEFLLILIR  260 (575)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~-~~~~~~~~~~~~~~~~tpLh~Aa~~g~----~~iv~~Ll~  260 (575)
                      .++                          .+++++|++. +.+++..+    ..+.||||.|+..|+    .++++.|++
T Consensus       158 ~~~--------------------------~~~v~~Ll~~~~~~~~~~~----~~g~t~l~~a~~~~~~~~~~~i~~~Ll~  207 (285)
T 1wdy_A          158 KGH--------------------------VEVLKILLDEMGADVNACD----NMGRNALIHALLSSDDSDVEAITHLLLD  207 (285)
T ss_dssp             HTC--------------------------HHHHHHHHHTSCCCTTCCC----TTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred             cCC--------------------------HHHHHHHHHhcCCCCCccC----CCCCCHHHHHHHccccchHHHHHHHHHH
Confidence            984                          8999999998 88887765    345599999999999    999999999


Q ss_pred             HCCCccccccCCCCchHHHHHHcCChhHHHHHHh-cCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHH
Q 037778          261 EYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ-IGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRE  339 (575)
Q Consensus       261 ~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~  339 (575)
                      ++++ ++.+|..|+||||+|+.+|+.+++++|++ .|++++.    +|.+|+||||+|+..++.+++++|          
T Consensus       208 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~----~~~~g~t~l~~A~~~~~~~i~~~L----------  272 (285)
T 1wdy_A          208 HGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND----TDSDGKTALLLAVELKLKKIAELL----------  272 (285)
T ss_dssp             TTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC----CCTTSCCHHHHHHHTTCHHHHHHH----------
T ss_pred             cCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc----cCCCCCcHHHHHHHcCcHHHHHHH----------
Confidence            9999 89999999999999999999999999999 8888754    999999999999999998776665          


Q ss_pred             HHHHHHHHHhhcccccccccC
Q 037778          340 LLWFEEVEKAVQRRSAEAKNE  360 (575)
Q Consensus       340 l~w~~~v~~~~~~~~~~~~n~  360 (575)
                               +..|++++.+|.
T Consensus       273 ---------l~~Ga~~~~~d~  284 (285)
T 1wdy_A          273 ---------CKRGASTDCGDL  284 (285)
T ss_dssp             ---------HHHSSCSCCSSC
T ss_pred             ---------HHcCCCCCcccc
Confidence                     447888877763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=326.97  Aligned_cols=257  Identities=12%  Similarity=0.057  Sum_probs=196.6

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCC----------CcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHE----------GEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN   72 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~----------~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d   72 (575)
                      .+|.|+||+|+..|+.+.+..++...+          ..++.+ |.+|+||||+|+..|+.+++++|++.  +.+++.+|
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~   89 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIIT   89 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEEC
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence            468999999999999988888655422          223444 88999999999999999999999999  89999999


Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhC
Q 037778           73 NVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTD  152 (575)
Q Consensus        73 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~  152 (575)
                      .+|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.++....+.+|.||||.|+..+
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g  168 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRG  168 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999997 89999999999999999999999999999882223455889999999999


Q ss_pred             cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778          153 LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       153 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~  232 (575)
                      +.++++.|++.  +.+++.+|.+|.||||+|+..++                          .+++++|++.|++++. +
T Consensus       169 ~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~ga~~~~-~  219 (285)
T 3d9h_A          169 HVECVNSLIAY--GGNIDHKISHLGTPLYLACENQQ--------------------------RACVKKLLESGADVNQ-G  219 (285)
T ss_dssp             CHHHHHHHHHT--TCCTTCCBTTTBCHHHHHHHTTC--------------------------HHHHHHHHHTTCCTTC-C
T ss_pred             CHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCc--------------------------HHHHHHHHHCCCCCCC-C
Confidence            99999999987  78888888899999999988884                          7888888888887773 2


Q ss_pred             hhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhc-Ccch
Q 037778          233 ISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQI-GAAK  299 (575)
Q Consensus       233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-~~~~  299 (575)
                          ..+.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+  ++.+++++|+++ +++.
T Consensus       220 ----~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          220 ----KGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             ----BTTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             ----CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence                3445888888888888888888888888 7888888888888888  456888888887 5544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.3e-40  Score=335.98  Aligned_cols=258  Identities=18%  Similarity=0.145  Sum_probs=215.8

Q ss_pred             CCcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHH--------HcCCCCCccccc
Q 037778            1 PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELV--------QRMEPGDLAQEN   72 (575)
Q Consensus         1 p~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll--------~~~~~~~l~~~d   72 (575)
                      |+..|.||||.|+..|+ ++++.++.   .+++...+..|+||||+|+..|+.+++++|+        +.  |.+++.+|
T Consensus        90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~d  163 (373)
T 2fo1_E           90 PEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAMD  163 (373)
T ss_dssp             ----CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCCC
T ss_pred             CCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCCC
Confidence            35678999999999654 67765543   4667662378999999999999999888877        56  89999999


Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc---c-cccCcCchhhHHHHH
Q 037778           73 NVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT---K-NSLNDEDRSHLLVTL  148 (575)
Q Consensus        73 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~---~-~~~~~~~g~t~L~~a  148 (575)
                      .+|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+   . .+..+.+|.||||+|
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A  242 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  242 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence            99999999999999999999999999997 889999999999999999999999999987   3 677899999999999


Q ss_pred             HHhC---cHHHHHHHHHhhhcccccc--------ccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHH
Q 037778          149 IQTD---LYDVALRVFEDLHEKSAIG--------RAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKL  217 (575)
Q Consensus       149 ~~~~---~~~~~~~Ll~~~~~~~~~~--------~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  217 (575)
                      +..+   +.++++.|++.  +.+++.        +|..|.||||+|+..++                          .++
T Consensus       243 ~~~~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~--------------------------~~~  294 (373)
T 2fo1_E          243 AHNEGRDQVASAKLLVEK--GAKVDYDGAARKDSEKYKGRTALHYAAQVSN--------------------------MPI  294 (373)
T ss_dssp             HHSCSTTHHHHHHHHHHH--TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC--------------------------HHH
T ss_pred             HHhCCcchHHHHHHHHHC--CCCcccccccccCcccccCCCHHHHHHHhCC--------------------------HHH
Confidence            9988   89999999997  666654        56688888888888884                          788


Q ss_pred             HHHHHHHh-hhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 037778          218 VQRLWEKV-VLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIG  296 (575)
Q Consensus       218 v~~L~~~~-~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  296 (575)
                      +++|++.+ .+++..+    ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++
T Consensus       295 v~~Ll~~~~~~~n~~d----~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          295 VKYLVGEKGSNKDKQD----EDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             HHHHHHHSCCCTTCCC----TTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCccCcC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            88888876 7777655    3445888888888888888888888888 7888888888888888888888888888887


Q ss_pred             cc
Q 037778          297 AA  298 (575)
Q Consensus       297 ~~  298 (575)
                      ++
T Consensus       370 a~  371 (373)
T 2fo1_E          370 PE  371 (373)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-38  Score=323.07  Aligned_cols=266  Identities=17%  Similarity=0.167  Sum_probs=240.1

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +..|.||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|+++  +.+++.+|..|.||||+
T Consensus        55 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~  130 (351)
T 3utm_A           55 DGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHE  130 (351)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence            4678999999999999999999998 58899987 99999999999999999999999999  89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      |+..|+.+++++|+++|++. +..+..|.||+++|+..+..+.+++....           .++..++..+..+.+..++
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l  198 (351)
T 3utm_A          131 AASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKG-----------HSLLQAAREADLAKVKKTL  198 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcc-----------cHHHHHHHhccHHHHHHHH
Confidence            99999999999999999996 88999999999999988888888776543           4567777888888888888


Q ss_pred             HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778          162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE  241 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t  241 (575)
                      ..  .......+..|.||||+|+..++                       ....+++++|++.|++++..+    ..|.|
T Consensus       199 ~~--~~~~~~~~~~~~t~L~~A~~~~~-----------------------~~~~~~~~~Ll~~g~~~~~~~----~~g~t  249 (351)
T 3utm_A          199 AL--EIINFKQPQSHETALHCAVASLH-----------------------PKRKQVAELLLRKGANVNEKN----KDFMT  249 (351)
T ss_dssp             TT--CCTTCCCTTTCCCHHHHHHHCCS-----------------------TTHHHHHHHHHHTTCCTTCCC----TTCCC
T ss_pred             Hh--hcccccCCCCCCCHHHHHHHHhC-----------------------ccHHHHHHHHHHcCCCcCCcC----CCCCC
Confidence            87  44555678899999999999852                       125789999999999998766    34559


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHH
Q 037778          242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLA  317 (575)
Q Consensus       242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlA  317 (575)
                      |||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++.    +|.+|+||+|+|
T Consensus       250 ~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~~~~g~tal~~a  320 (351)
T 3utm_A          250 PLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI----ISLQGFTAAQMG  320 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC----cCCCCCChhhhh
Confidence            99999999999999999999999 899999999999999999999999999999999865    999999999998

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.6e-39  Score=316.64  Aligned_cols=249  Identities=16%  Similarity=0.118  Sum_probs=181.8

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCC---ccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGD---LAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPI  113 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~---l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  113 (575)
                      |.+|+||||+|++.|+.++|++|++.  +.+   ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL   82 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc--CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            78888888888888888888888887  555   7788888888888888888888888888888886 77888888888


Q ss_pred             HHHHHcCChHHHHHHHhccc-cc-------------cCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcH
Q 037778          114 DLAASLGHEDMVVYLYGQTK-NS-------------LNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETA  179 (575)
Q Consensus       114 ~~A~~~g~~~~v~~Ll~~~~-~~-------------~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tp  179 (575)
                      |+|+..|+.+++++|++.++ ..             .....+.++++.+...+........+.. .+.+++.+|..|.||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED-WRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC-GGGGTTCCCTTSCCH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh-hhhcCCCcCCCCcCH
Confidence            88888888888888888765 11             1223445666666665555444445544 578888999999999


Q ss_pred             HHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHH
Q 037778          180 LHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILI  259 (575)
Q Consensus       180 Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll  259 (575)
                      ||+|+..++                          .+++++|++.|++++..+   ...|.||||+|+..|+.+++++|+
T Consensus       162 L~~A~~~g~--------------------------~~~v~~Ll~~g~~~~~~~---~~~g~tpL~~A~~~~~~~~v~~Ll  212 (282)
T 1oy3_D          162 LHVAVIHKD--------------------------AEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELLL  212 (282)
T ss_dssp             HHHHHHTTC--------------------------HHHHHHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCC--------------------------HHHHHHHHHcCCCCCCCC---CCCCcCHHHHHHHcCCHHHHHHHH
Confidence            999999994                          899999999999988765   333669999999999999999999


Q ss_pred             HHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCC
Q 037778          260 REYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQ  323 (575)
Q Consensus       260 ~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~  323 (575)
                      ++|++ ++.+|..|+||||+|+.+++.+++++|+++|++++.    +|.+|.|||++|......
T Consensus       213 ~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          213 KAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE----DGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCC----CC----------------
T ss_pred             HcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCc----CCCcccccccccCCcccc
Confidence            99999 899999999999999999999999999999999864    999999999999886653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.3e-40  Score=336.77  Aligned_cols=259  Identities=17%  Similarity=0.169  Sum_probs=224.9

Q ss_pred             CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHHHHHcCCHHHHHHHH--------hcCccccccCC
Q 037778           36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFFAAASGMVELAREIM--------THNKAIATEQD  106 (575)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~Aa~~g~~~iv~~Ll--------~~~~~~~~~~~  106 (575)
                      .+..|.||||+|+..|+ ++++.|+    ..+++.+| ..|+||||+|+..|+.++++.|+        +.|+++ +.+|
T Consensus        90 ~~~~g~t~L~~Aa~~~~-~~~~~L~----~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d  163 (373)
T 2fo1_E           90 PEPESPIKLHTEAAGSY-AITEPIT----RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMD  163 (373)
T ss_dssp             ----CCCHHHHHHHSSS-CCCSCCS----TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCC
T ss_pred             CCCCCccHHHHHhcCCc-hHHHHhc----cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Confidence            37889999999999654 7777765    35788888 78999999999999998887776        788886 8999


Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhc--cccccccCCCCcHHHHH
Q 037778          107 DKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHE--KSAIGRAANEETALHAL  183 (575)
Q Consensus       107 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~--~~~~~~d~~g~tpLh~a  183 (575)
                      ..|.||||+|+..|+.++|++|++.++ .+..+.+|.||||+|+..++.++++.|++. ..  .+++.+|.+|.||||+|
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~L~~A  242 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS-TKLKGDIEELDRNGMTALMIV  242 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS-HHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhc-CccccChhhcCCCCCCHHHHH
Confidence            999999999999999999999999999 788899999999999999999999999997 32  68889999999999999


Q ss_pred             HhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhh----hcccCCChHHHHHHHcCCHHHHHHHH
Q 037778          184 ARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRI----SNLIAEPELIFDAARQGNLEFLLILI  259 (575)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~----~~~~~~~tpLh~Aa~~g~~~iv~~Ll  259 (575)
                      +..+.                       ....+++++|++.|++++....    ..+..|.||||.|+..|+.+++++|+
T Consensus       243 ~~~~~-----------------------~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  299 (373)
T 2fo1_E          243 AHNEG-----------------------RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV  299 (373)
T ss_dssp             HHSCS-----------------------TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred             HHhCC-----------------------cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH
Confidence            98762                       1137899999999999875321    01234569999999999999999999


Q ss_pred             HHC-CCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          260 REY-PDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       260 ~~~-~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      +++ .+ ++.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+||||+|+..++.+++++|
T Consensus       300 ~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~----~d~~g~t~l~~A~~~g~~~iv~~L  365 (373)
T 2fo1_E          300 GEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNIVDIF  365 (373)
T ss_dssp             HHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC----CCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC----CCCCCCCHHHHHHHcCCHHHHHHH
Confidence            997 66 899999999999999999999999999999999865    999999999999999998877665

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.9e-38  Score=320.37  Aligned_cols=272  Identities=13%  Similarity=0.096  Sum_probs=238.4

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccC-CChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNV-GYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL  115 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~-g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  115 (575)
                      +.+|+||||.|++.|+.++|++||++  |++++.++.+ |.||||+|+..|+.++|++|+++|+++ +.++..+.+|++.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   98 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHH
Confidence            34578999999999999999999999  9999998764 999999999999999999999999996 8999999999999


Q ss_pred             HHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhcccccc----------ccCCCCcHHHHHH
Q 037778          116 AASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIG----------RAANEETALHALA  184 (575)
Q Consensus       116 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~----------~d~~g~tpLh~a~  184 (575)
                      ++..++.+++..+++.+. .+..+..|.||+|.|+..++.++++.+++.  +.+++.          .+..|.||||+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~--ga~~~~~~~~~~~~~~~~~~g~T~L~~A~  176 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAA  176 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCC-----CTTCSCCHHHHHH
T ss_pred             HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc--CCCcchhhccccccccccCCCCcHHHHHH
Confidence            999999999999999998 888999999999999999999999999987  655543          3567999999999


Q ss_pred             hcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHH-hhhCChhhhhcccCCChHHHHHHHcCC----HHHHHHHH
Q 037778          185 RKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEK-VVLLSDSRISNLIAEPELIFDAARQGN----LEFLLILI  259 (575)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~-~~~~~~~~~~~~~~~~tpLh~Aa~~g~----~~iv~~Ll  259 (575)
                      +.|+                          .+++++|+++ |++++..+    ..+.||+|.++..++    .++++.|+
T Consensus       177 ~~g~--------------------------~~~v~~LL~~~gad~n~~d----~~g~t~l~~~~~~~~~~~~~~i~~lLl  226 (337)
T 4g8k_A          177 EKGH--------------------------VEVLKILLDEMGADVNACD----NMGRNALIHALLSSDDSDVEAITHLLL  226 (337)
T ss_dssp             HHTC--------------------------HHHHHHHHHHSCCCTTCCC----TTSCCHHHHHHHHSCTTTHHHHHHHHH
T ss_pred             HCCC--------------------------HHHHHHHHhccCCCcCccC----CCCCcHHHHHHHHcCcccHHHHHHHHH
Confidence            9994                          7999999965 88888765    344599988776544    46889999


Q ss_pred             HHCCCccccccCCCCchHHHHHHcCChhHHHHHHhc-CcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHH
Q 037778          260 REYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQI-GAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQR  338 (575)
Q Consensus       260 ~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~  338 (575)
                      ++|++ ++.+|.+|+||||+|+..|+.+++++|++. |++++    .+|.+|+||||+|++.|+.++++.|         
T Consensus       227 ~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn----~~d~~G~TpL~~A~~~g~~~iv~~L---------  292 (337)
T 4g8k_A          227 DHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL---------  292 (337)
T ss_dssp             HTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT----CBCTTSCBHHHHHHHTTCHHHHHHH---------
T ss_pred             HCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc----CcCCCCCCHHHHHHHcCCHHHHHHH---------
Confidence            99999 899999999999999999999999999985 67764    5999999999999999998776665         


Q ss_pred             HHHHHHHHHHhhcccccccccCCCCChhHHHHHh
Q 037778          339 ELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTRK  372 (575)
Q Consensus       339 ~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~~  372 (575)
                                +..|++++     +++|+++|.+.
T Consensus       293 ----------l~~GAd~n-----~~~~L~~A~~~  311 (337)
T 4g8k_A          293 ----------CKRGASTD-----CGDLVMTARRN  311 (337)
T ss_dssp             ----------HTTSCSST-----TCCHHHHHHHT
T ss_pred             ----------HHCCCCCC-----CCCHHHHHHHc
Confidence                      44677665     45799999764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=314.42  Aligned_cols=244  Identities=14%  Similarity=0.105  Sum_probs=196.9

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcC---------CCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCC
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRM---------EPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDD  107 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~---------~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~  107 (575)
                      ...|.|+||+|+..|+.+.+..++...         -...++.+|..|+||||+|+..|+.++++.|++.++++ +.+|.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC
Confidence            578999999999999987777765542         02236778999999999999999999999999999996 89999


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc
Q 037778          108 KRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK  186 (575)
Q Consensus       108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~  186 (575)
                      .|.||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|++.  +..++. +.+|.||||+|+..
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH--GASVQP-ESDLASPIHEAARR  167 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSC-SCTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHc
Confidence            99999999999999999999999998 788999999999999999999999999997  666654 44599999999999


Q ss_pred             CCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCcc
Q 037778          187 NLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLI  266 (575)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~  266 (575)
                      ++                          .+++++|++.|++++..+    ..+.||||+|+..|+.+++++|++.+++ +
T Consensus       168 g~--------------------------~~~v~~Ll~~g~~~~~~d----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~  216 (285)
T 3d9h_A          168 GH--------------------------VECVNSLIAYGGNIDHKI----SHLGTPLYLACENQQRACVKKLLESGAD-V  216 (285)
T ss_dssp             TC--------------------------HHHHHHHHHTTCCTTCCB----TTTBCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred             CC--------------------------HHHHHHHHHCCCCCCCcC----CCCCCHHHHHHHcCcHHHHHHHHHCCCC-C
Confidence            94                          899999999999988765    3455999999999999999999999999 5


Q ss_pred             ccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhC
Q 037778          267 WNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAML  320 (575)
Q Consensus       267 ~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~  320 (575)
                      + .|..|+||||+|+..++.+++++|+++|++++.    +|.+|+||||+|+..
T Consensus       217 ~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          217 N-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA----KNAEGKRPVELVPPE  265 (285)
T ss_dssp             T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCGGGGSCTT
T ss_pred             C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHhcCc
Confidence            5 489999999999999999999999999999865    999999999999943

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.9e-39  Score=331.34  Aligned_cols=252  Identities=16%  Similarity=0.062  Sum_probs=223.1

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      |.+|.||||+|+..|+.++|++|++.  |.+++.+|..|.||||+|+..|+.+++++|++.+++.   .+.+|.||||+|
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A   91 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLA   91 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHH
Confidence            78899999999999999999999998  8999999999999999999999999999999999854   345799999999


Q ss_pred             HHcCChHHHHHHHhc----cc-ccc-----------------CcCchhhHHHHHHHhC--cHHHHHHHHHhhhccccccc
Q 037778          117 ASLGHEDMVVYLYGQ----TK-NSL-----------------NDEDRSHLLVTLIQTD--LYDVALRVFEDLHEKSAIGR  172 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~----~~-~~~-----------------~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~  172 (575)
                      +..|+.+++++|++.    +. .+.                 .+.+|.||||+|+..|  +.++++.|++.  +.+++.+
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~  169 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAK  169 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCC
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCccc
Confidence            999999999999998    44 333                 6778999999999999  99999999998  8999999


Q ss_pred             cCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhh-----CChhhhhcccCCChHHHHHH
Q 037778          173 AANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVL-----LSDSRISNLIAEPELIFDAA  247 (575)
Q Consensus       173 d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~-----~~~~~~~~~~~~~tpLh~Aa  247 (575)
                      |.+|.||||+|+..++                          .+++++|++.|++     ++..+    ..+.||||+|+
T Consensus       170 d~~g~t~L~~A~~~g~--------------------------~~~v~~Ll~~g~~~~~~~~~~~~----~~g~t~L~~A~  219 (364)
T 3ljn_A          170 DKADETPLMRAMEFRN--------------------------REALDLMMDTVPSKSSLRLDYAN----KQGNSHLHWAI  219 (364)
T ss_dssp             CTTSCCHHHHHHHTTC--------------------------HHHHHHHHHHCSCSSSCCTTCCC----TTCCCTTHHHH
T ss_pred             CCCCCCHHHHHHHcCC--------------------------HHHHHHHHhcccccccccccccC----CCCCcHHHHHH
Confidence            9999999999999994                          8999999999988     66554    34559999999


Q ss_pred             HcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhh--------hcccCCCCcHHHHHhh
Q 037778          248 RQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLIL--------KFEDPKKNNILHLAAM  319 (575)
Q Consensus       248 ~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~--------~~~d~~G~T~LHlAa~  319 (575)
                      ..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++.+...        ...+..|+|||+.|+.
T Consensus       220 ~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~  298 (364)
T 3ljn_A          220 LINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA  298 (364)
T ss_dssp             TTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSC
T ss_pred             HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhh
Confidence            99999999999999999 89999999999999999999999999999998764310        1157788999999998


Q ss_pred             CCCCCcc
Q 037778          320 LPPQDRL  326 (575)
Q Consensus       320 ~~~~~~~  326 (575)
                      .++.+.+
T Consensus       299 ~~~~~~v  305 (364)
T 3ljn_A          299 DPSKQEV  305 (364)
T ss_dssp             CHHHHHH
T ss_pred             ccCHHHH
Confidence            8865543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.8e-38  Score=303.88  Aligned_cols=228  Identities=17%  Similarity=0.133  Sum_probs=123.2

Q ss_pred             ccccCCCCCChHHhHHHHcC-------------CHHHHHHHHHcCCCCCcc-ccccCCChHHHHHHHcCCHHHHHHHHhc
Q 037778           32 IRAPISKRKDTALHIAAAAK-------------QYGFVKELVQRMEPGDLA-QENNVGYTALFFAAASGMVELAREIMTH   97 (575)
Q Consensus        32 ~~~~~~~~g~TpLh~Aa~~g-------------~~~~v~~Ll~~~~~~~l~-~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~   97 (575)
                      ++.+ |.+|.||||+|+..|             +.+++++|++.  +.+++ ..|..|.||||+|+..|+.+++++|+++
T Consensus         3 vn~~-d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   79 (253)
T 1yyh_A            3 VNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA   79 (253)
T ss_dssp             ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCC-CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            3444 556666666666655             56666666666  55543 3356666666666666666666666666


Q ss_pred             CccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCC
Q 037778           98 NKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAAN  175 (575)
Q Consensus        98 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~  175 (575)
                      |+++ +..|..|.||||+|+..|+.+++++|++.++  .+..+.+|.||||.|+..++.++++.|++.  +.+++.+|.+
T Consensus        80 g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~  156 (253)
T 1yyh_A           80 SADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVNAVDDL  156 (253)
T ss_dssp             TCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT--TCCTTCBCTT
T ss_pred             CCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc--CCCCCCcCCC
Confidence            6664 5666666666666666666666666666554  344445555555555555555555555554  5556666667


Q ss_pred             CCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHH
Q 037778          176 EETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFL  255 (575)
Q Consensus       176 g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv  255 (575)
                      |.||||+|+..++                          .+++++|++.|++++..+    ..|.||||+|+..|+.+++
T Consensus       157 g~t~L~~A~~~~~--------------------------~~~v~~Ll~~ga~~~~~~----~~g~tpL~~A~~~~~~~~v  206 (253)
T 1yyh_A          157 GKSALHWAAAVNN--------------------------VDAAVVLLKNGANKDMQN----NREETPLFLAAREGSYETA  206 (253)
T ss_dssp             SCBHHHHHHHHTC--------------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHcCC--------------------------HHHHHHHHHcCCCCCCcC----CCCCCHHHHHHHCCCHHHH
Confidence            7777777776663                          566666666666665544    2334777777777777777


Q ss_pred             HHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 037778          256 LILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIG  296 (575)
Q Consensus       256 ~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  296 (575)
                      ++|+++|++ ++.+|..|+||+|+|+++|+.+++++|.+..
T Consensus       207 ~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          207 KVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            777777777 6677777777777777777777777776644

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.4e-38  Score=323.46  Aligned_cols=260  Identities=13%  Similarity=0.030  Sum_probs=232.4

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +..|+||||+||..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.++|++|++.  +.+++  +.+|.||||+
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~--~~~g~t~L~~   90 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASV--GEVHS--LWHGQKPIHL   90 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHH--CCCCC--CBTTBCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHC--CCCcc--ccCCCCHHHH
Confidence            4578999999999999999999998 48899987 99999999999999999999999999  66444  4589999999


Q ss_pred             HHHcCCHHHHHHHHhc----Ccccccc-----------------CCCCCCcHHHHHHHcC--ChHHHHHHHhccc-cccC
Q 037778           82 AAASGMVELAREIMTH----NKAIATE-----------------QDDKRVLPIDLAASLG--HEDMVVYLYGQTK-NSLN  137 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-~~~~  137 (575)
                      |+..|+.+++++|++.    +.+. +.                 .|..|.||||+|+..|  +.+++++|++.++ .+..
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~  169 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK  169 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence            9999999999999998    5554 44                 7889999999999999  9999999999998 8889


Q ss_pred             cCchhhHHHHHHHhCcHHHHHHHHHhhhccc-----cccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhH
Q 037778          138 DEDRSHLLVTLIQTDLYDVALRVFEDLHEKS-----AIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQ  212 (575)
Q Consensus       138 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~-----~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (575)
                      +..|.||||+|+..++.++++.|++.  +.+     ++.+|..|.||||+|+..++                        
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~~~g~t~L~~A~~~g~------------------------  223 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDT--VPSKSSLRLDYANKQGNSHLHWAILINW------------------------  223 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHH--CSCSSSCCTTCCCTTCCCTTHHHHTTTC------------------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhc--ccccccccccccCCCCCcHHHHHHHcCC------------------------
Confidence            99999999999999999999999997  666     88999999999999999994                        


Q ss_pred             HHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCc-----------cccccCCCCchHHHHH
Q 037778          213 KALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDL-----------IWNIDENGYTIFHTAV  281 (575)
Q Consensus       213 ~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~-----------~~~~d~~G~t~Lh~A~  281 (575)
                        .+++++|++.|++++..+    ..|.||||+|+..|+.+++++|++++++.           ....+..|+++++.|+
T Consensus       224 --~~~v~~Ll~~gad~~~~d----~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa  297 (364)
T 3ljn_A          224 --EDVAMRFVEMGIDVNMED----NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA  297 (364)
T ss_dssp             --HHHHHHHHTTTCCTTCCC----TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSS
T ss_pred             --HHHHHHHHHcCCCCCCCC----CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhh
Confidence              899999999999998766    44569999999999999999999998762           1125778999999999


Q ss_pred             HcCChhHHHHHHhcCcchh
Q 037778          282 LHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       282 ~~~~~~iv~~Ll~~~~~~~  300 (575)
                      ..++.+.+..|++.+.+..
T Consensus       298 ~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          298 ADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHH
Confidence            9998888888888776653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.7e-38  Score=306.19  Aligned_cols=227  Identities=15%  Similarity=0.146  Sum_probs=177.4

Q ss_pred             CccccccCCChHHHHHHHcC-------------CHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           67 DLAQENNVGYTALFFAAASG-------------MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        67 ~l~~~d~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      |+|.+|.+|+||||+|+..|             +.++++.|++.++++....|..|.||||+|+..|+.+++++|++.++
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            57889999999999999977             89999999999999866779999999999999999999999999998


Q ss_pred             -cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhH
Q 037778          134 -NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQ  212 (575)
Q Consensus       134 -~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (575)
                       .+..+..|.||||+|+..++.++++.|++. .+.+++.++.+|.||||+|+..++                        
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~------------------------  136 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRN-RATDLDARMHDGTTPLILAARLAV------------------------  136 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHS-TTSCTTCCCTTCCCHHHHHHHHTC------------------------
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCcHHHHHHHcCh------------------------
Confidence             888899999999999999999999999998 566889999999999999999984                        


Q ss_pred             HHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHH
Q 037778          213 KALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLI  292 (575)
Q Consensus       213 ~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~L  292 (575)
                        .+++++|++.|++++..+    ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|
T Consensus       137 --~~~v~~Ll~~g~~~~~~d----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~L  209 (253)
T 1yyh_A          137 --EGMLEDLINSHADVNAVD----DLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVL  209 (253)
T ss_dssp             --SSHHHHHHHTTCCTTCBC----TTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             --HHHHHHHHHcCCCCCCcC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence              689999999999988766    3456999999999999999999999999 899999999999999999999999999


Q ss_pred             HhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          293 YQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       293 l~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      +++|++++.    +|..|+||||+|++.|+.+++.++
T Consensus       210 l~~ga~~~~----~d~~g~tpl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          210 LDHFANRDI----TDHMDRLPRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             HHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCCccc----cccCCCCHHHHHHHcCCHHHHHHH
Confidence            999999865    999999999999999998877665

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.5e-37  Score=297.55  Aligned_cols=228  Identities=19%  Similarity=0.171  Sum_probs=189.2

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcC--CCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRM--EPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPID  114 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  114 (575)
                      |.+|+||||+|++.|+.+++++|++..  .+.+++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~   84 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH   84 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            888999999999999999999998721  17889999999999999999999999999999999886 888889999999


Q ss_pred             HHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccc
Q 037778          115 LAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFT  194 (575)
Q Consensus       115 ~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~  194 (575)
                      +|+..|+.+++++|++.++.                              ...+++.+|.+|.||||+|+..++      
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~------------------------------~~~~~~~~~~~g~t~L~~A~~~~~------  128 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAP------------------------------GTLDLEARNYDGLTALHVAVNTEC------  128 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCT------------------------------TSCCTTCCCTTSCCHHHHHHHHTC------
T ss_pred             HHHHcCCHHHHHHHHHcCCC------------------------------ccccccccCcCCCcHHHHHHHcCC------
Confidence            99999999999999887651                              122445567777788888877773      


Q ss_pred             hhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCC
Q 037778          195 KQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGY  274 (575)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~  274 (575)
                                          .+++++|++.|++++..+   ...+.||||.|+..|+.+++++|+++|++ ++.+|..|+
T Consensus       129 --------------------~~~~~~Ll~~g~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~  184 (241)
T 1k1a_A          129 --------------------QETVQLLLERGADIDAVD---IKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGS  184 (241)
T ss_dssp             --------------------HHHHHHHHHTTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSC
T ss_pred             --------------------HHHHHHHHHcCCCccccc---ccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCC
Confidence                                677778887777766543   23455899999999999999999999999 788999999


Q ss_pred             chHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          275 TIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       275 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      ||||+|+.+|+.+++++|+++|++++.    +|..|+||||+|+..++.++++.+
T Consensus       185 t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          185 SALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCC----cCCCCCCHHHHHHhcCcHHHHhhh
Confidence            999999999999999999999998864    899999999999998887776665

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.8e-37  Score=293.19  Aligned_cols=226  Identities=18%  Similarity=0.171  Sum_probs=180.7

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .+.+|||.|+..|+.+.++.+++..+..++.. |.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHHH
Confidence            46788999999999999998888776666665 88889999999999999999999988  8888888888999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      ..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.+.                              
T Consensus        82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------------------------  130 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA------------------------------  130 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------------------------------
T ss_pred             HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------------------------------
Confidence            999999999999988886 7888888999999998888888888888755                              


Q ss_pred             hhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHH
Q 037778          164 LHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELI  243 (575)
Q Consensus       164 ~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpL  243 (575)
                          +++.+|..|.||||+|+..++                          .+++++|++.|++++..+    ..|.|||
T Consensus       131 ----~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~----~~g~t~L  176 (231)
T 3aji_A          131 ----NPDAKDHYDATAMHRAAAKGN--------------------------LKMVHILLFYKASTNIQD----TEGNTPL  176 (231)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHHTC--------------------------HHHHHHHHHTTCCSCCCC----TTSCCHH
T ss_pred             ----CCCCcCCCCCcHHHHHHHcCC--------------------------HHHHHHHHhcCCCccccC----CCCCCHH
Confidence                333455556666666665552                          555666666655555443    2334777


Q ss_pred             HHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcc
Q 037778          244 FDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA  298 (575)
Q Consensus       244 h~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  298 (575)
                      |+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.++|++
T Consensus       177 ~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          177 HLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            777777888999999999988 788899999999999998999999999888764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.9e-37  Score=296.16  Aligned_cols=228  Identities=16%  Similarity=0.125  Sum_probs=187.4

Q ss_pred             CCcccchHHHHHHHcCCHHHHHHHHh---hCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCCh
Q 037778            1 PIRRRRLKLYRAALTGDWAVARGIYD---VHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYT   77 (575)
Q Consensus         1 p~~~~~t~L~~Aa~~g~~~~v~~lL~---~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~T   77 (575)
                      ++.+|+||||.|+..|+.++++.+++   +.+.+++.. |..|.||||+|+..|+.+++++|++.  |.+++.+|..|.|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t   81 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQT   81 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCC
Confidence            46789999999999999999999997   468888887 89999999999999999999999999  8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCc----cccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCc
Q 037778           78 ALFFAAASGMVELAREIMTHNK----AIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDL  153 (575)
Q Consensus        78 pLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~  153 (575)
                      |||+|+..|+.++++.|++.++    ++ +..|..|.||||+|+..|+.+++++|++.++                    
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------------------  140 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGA--------------------  140 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCC--------------------
Confidence            9999999999999999999987    54 7888999999999999999999999998866                    


Q ss_pred             HHHHHHHHHhhhcccccccc-CCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778          154 YDVALRVFEDLHEKSAIGRA-ANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       154 ~~~~~~Ll~~~~~~~~~~~d-~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~  232 (575)
                                    +++.++ ..|.||||+|+..++                          .+++++|++.|++++..+
T Consensus       141 --------------~~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~  180 (241)
T 1k1a_A          141 --------------DIDAVDIKSGRSPLIHAVENNS--------------------------LSMVQLLLQHGANVNAQM  180 (241)
T ss_dssp             --------------CTTCCCTTTCCCHHHHHHHTTC--------------------------HHHHHHHHHTTCCTTCBC
T ss_pred             --------------CcccccccCCCcHHHHHHHcCC--------------------------HHHHHHHHHcCCCCCCcC
Confidence                          222333 456666666666552                          556666666666655543


Q ss_pred             hhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCc
Q 037778          233 ISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA  297 (575)
Q Consensus       233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  297 (575)
                          ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.++++.|.++++
T Consensus       181 ----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          181 ----YSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             ----TTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             ----CCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence                2334777777888889999999999999 78899999999999999999999999988764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.9e-36  Score=290.74  Aligned_cols=222  Identities=19%  Similarity=0.182  Sum_probs=170.9

Q ss_pred             cccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCC
Q 037778           31 EIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRV  110 (575)
Q Consensus        31 ~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~  110 (575)
                      +++.+ |.+|.||||+|+..|+.+++++|++.  |.+++.+|..|.||||+|+..|+.+++++|++.++++ +.++..|.
T Consensus         3 ~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   78 (237)
T 3b7b_A            3 NFKME-HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGS   78 (237)
T ss_dssp             CCCCS-SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSC
T ss_pred             Ccccc-cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCC
Confidence            34444 78888999999999999999999988  8888888888999999999999999999999988886 77888888


Q ss_pred             cHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCC
Q 037778          111 LPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNY  190 (575)
Q Consensus       111 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~  190 (575)
                      ||||+|+..|+.+++++|++.++                                 .+++.++..|.||||+|+..++  
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~--  123 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQ---------------------------------MDVNCQDDGGWTPMIWATEYKH--  123 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTC---------------------------------CCTTCCCTTSCCHHHHHHHTTC--
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCC---------------------------------CCcccCCCCCCCHHHHHHHcCC--
Confidence            99999998888888888888753                                 2333445555555555555552  


Q ss_pred             cccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCcccccc
Q 037778          191 SHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNID  270 (575)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d  270 (575)
                                              .+++++|++.|++++..+    ..+.||||.|+..|+.+++++|++++++ ++.+|
T Consensus       124 ------------------------~~~~~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~  174 (237)
T 3b7b_A          124 ------------------------VDLVKLLLSKGSDINIRD----NEENICLHWAAFSGCVDIAEILLAAKCD-LHAVN  174 (237)
T ss_dssp             ------------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCC
T ss_pred             ------------------------HHHHHHHHHCCCCCCccC----CCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcC
Confidence                                    455555555555555433    2334777777777788888888888888 77788


Q ss_pred             CCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCC
Q 037778          271 ENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQD  324 (575)
Q Consensus       271 ~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~  324 (575)
                      ..|+||||+|+++++.+++++|+++|++++.    +|.+|+||||+|+..++.+
T Consensus       175 ~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTL----KNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----CCTTSCCHHHHSCTTCHHH
T ss_pred             CCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc----cCCCCCCHHHHHHHHHHHH
Confidence            8888888888888888888888888888754    7888888888888887654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.6e-36  Score=289.79  Aligned_cols=194  Identities=19%  Similarity=0.166  Sum_probs=171.5

Q ss_pred             CCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHH
Q 037778           66 GDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLL  145 (575)
Q Consensus        66 ~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L  145 (575)
                      .+++.+|.+|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.++            
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   68 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGA------------   68 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC------------
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCC------------
Confidence            367888999999999999999999999999999986 8889999999999999999999999988644            


Q ss_pred             HHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh
Q 037778          146 VTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV  225 (575)
Q Consensus       146 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~  225 (575)
                                            .++.++..|.||||+|+..++                          .+++++|++.+
T Consensus        69 ----------------------~~~~~~~~g~t~L~~A~~~~~--------------------------~~~~~~Ll~~~  100 (237)
T 3b7b_A           69 ----------------------LVDPKDAEGSTCLHLAAKKGH--------------------------YEVVQYLLSNG  100 (237)
T ss_dssp             ----------------------CCCCCCTTSCCHHHHHHHTTC--------------------------HHHHHHHHTTT
T ss_pred             ----------------------CCCCCCCCCCcHHHHHHHcCC--------------------------HHHHHHHHhCC
Confidence                                  445677788899999998884                          78899999888


Q ss_pred             -hhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhh
Q 037778          226 -VLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILK  304 (575)
Q Consensus       226 -~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~  304 (575)
                       .+++..+    ..+.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++|++++.   
T Consensus       101 ~~~~~~~~----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---  172 (237)
T 3b7b_A          101 QMDVNCQD----DGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA---  172 (237)
T ss_dssp             CCCTTCCC----TTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC---
T ss_pred             CCCcccCC----CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC---
Confidence             5666544    3455999999999999999999999999 889999999999999999999999999999998864   


Q ss_pred             cccCCCCcHHHHHhhCCCCCccccc
Q 037778          305 FEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       305 ~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                       +|..|+||||+|+..++.++++.|
T Consensus       173 -~~~~g~t~L~~A~~~~~~~~v~~L  196 (237)
T 3b7b_A          173 -VNIHGDSPLHIAARENRYDCVVLF  196 (237)
T ss_dssp             -CCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             -cCCCCCCHHHHHHHhCCHhHHHHH
Confidence             899999999999999998887765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-37  Score=306.71  Aligned_cols=262  Identities=16%  Similarity=0.165  Sum_probs=220.8

Q ss_pred             HHHHcCCHHHHHHHHhhCCCcccc--------cCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778           11 RAALTGDWAVARGIYDVHEGEIRA--------PISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus        11 ~Aa~~g~~~~v~~lL~~~~~~~~~--------~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      .+|..|..+.++.++.... .+..        ..+.+|.||||.|+..|+.++|++|++.  |.+++.+|.+|.||||+|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   80 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQA   80 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHH
T ss_pred             hHHHHHHHHHHHHHHcccc-ccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHH
Confidence            5788888899998888532 2221        1234678999999999999999999999  899999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      +..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.++
T Consensus        81 ~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B           81 CIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            9999999999999999997 8999999999999999999999999999998 7888999999999999999999999999


Q ss_pred             HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778          162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE  241 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t  241 (575)
                      .. .+...+..+..+.+++                                  .+.+..++..+...+...   ...+.|
T Consensus       160 ~~-~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~~~~~~~~~~---~~~g~t  201 (299)
T 1s70_B          160 NR-QGVDIEAARKEEERIM----------------------------------LRDARQWLNSGHINDVRH---AKSGGT  201 (299)
T ss_dssp             HH-HTCCHHHHHHHHHHHH----------------------------------HHHHHHHHHHTCCCCCCC---TTTCCC
T ss_pred             hh-cCCCchhhhhhhhhHH----------------------------------HHHHHHHHhccCcchhhh---cCCCCC
Confidence            87 5555443332222222                                  233444555554333222   234569


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhh
Q 037778          242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAM  319 (575)
Q Consensus       242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~  319 (575)
                      |||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+||||+|++
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~  274 (299)
T 1s70_B          202 ALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTTTSCCS
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC----cCCCCCCHHHHHHH
Confidence            99999999999999999999999 899999999999999999999999999999999865    99999999999965

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.9e-37  Score=302.69  Aligned_cols=253  Identities=16%  Similarity=0.098  Sum_probs=186.8

Q ss_pred             ccccccCCChHHHHHHHcCCHHHHHHHHhcCccc--cccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhH
Q 037778           68 LAQENNVGYTALFFAAASGMVELAREIMTHNKAI--ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHL  144 (575)
Q Consensus        68 l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~  144 (575)
                      ++.+|.+|+||||+|++.|+.+++++|++.+++.  .+.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            4678999999999999999999999999988872  48899999999999999999999999999999 88889999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhhccccc-------------cccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhh
Q 037778          145 LVTLIQTDLYDVALRVFEDLHEKSAI-------------GRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKR  211 (575)
Q Consensus       145 L~~a~~~~~~~~~~~Ll~~~~~~~~~-------------~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (575)
                      ||+|+..++.++++.|++.  +....             .....+.++++.++..+.                       
T Consensus        82 L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  136 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQP--RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP-----------------------  136 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSS--CCSSCCCC---------------------------------------------------
T ss_pred             HHHHHHcCCcchhHhhhcc--CCCCchhhHHHHhhcccccCcchhcchhhhcccccc-----------------------
Confidence            9999999999999999987  32211             112334455555544331                       


Q ss_pred             HHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccC-CCCchHHHHHHcCChhHHH
Q 037778          212 QKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDE-NGYTIFHTAVLHRRKRIFK  290 (575)
Q Consensus       212 ~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~-~G~t~Lh~A~~~~~~~iv~  290 (575)
                        .......+...+.+++..+    ..+.||||.|+..|+.+++++|+++|++ ++..+. .|+||||+|+.+|+.++++
T Consensus       137 --~~~~~~~~~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~  209 (282)
T 1oy3_D          137 --ENEEEPRDEDWRLQLEAEN----YDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLE  209 (282)
T ss_dssp             ---------CCCGGGGTTCCC----TTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             --chhhhhhhhhhhhcCCCcC----CCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHH
Confidence              1223333344455555544    3455999999999999999999999999 677775 5999999999999999999


Q ss_pred             HHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHH
Q 037778          291 LIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFT  370 (575)
Q Consensus       291 ~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~  370 (575)
                      +|+++|++++.    +|..|+||||+|+..++.+++++|                   +..|++++.+|.+|+||++++.
T Consensus       210 ~Ll~~gad~~~----~d~~g~tpL~~A~~~~~~~~v~~L-------------------l~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          210 LLLKAGADPTA----RMYGGRTPLGSALLRPNPILARLL-------------------RAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             HHHHTTCCTTC----CCTTSCCHHHHHHTSSCHHHHHHH-------------------HHTTCCCCCCC-----------
T ss_pred             HHHHcCCCCcc----cccCCCCHHHHHHHcCCcHHHHHH-------------------HHcCCCcCcCCCcccccccccC
Confidence            99999999865    999999999999999998776665                   5589999999999999999997


Q ss_pred             HhhHH
Q 037778          371 RKHEN  375 (575)
Q Consensus       371 ~~~~~  375 (575)
                      ....+
T Consensus       267 ~~~~~  271 (282)
T 1oy3_D          267 SDSDS  271 (282)
T ss_dssp             -----
T ss_pred             Ccccc
Confidence            65543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=284.24  Aligned_cols=231  Identities=17%  Similarity=0.130  Sum_probs=188.9

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      |..|.||||.|++.|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            66777888888888888888888887  7777777888888888888888888888888887776455555678888888


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK  195 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~  195 (575)
                      +..|+.+++++|++.++ .+..+..|.||||.|+..++.++++.|++.  +.+++.+|.+|.||||+|+..++       
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~g~t~l~~a~~~~~-------  154 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK--GQDVDMMDQNGMTPLMWAAYRTH-------  154 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHCC-------
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc--CCCccccCCCCCcHHHHHHHhCC-------
Confidence            88888888888888777 666777788888888888888888888876  77788889999999999997663       


Q ss_pred             hhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCc
Q 037778          196 QYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYT  275 (575)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t  275 (575)
                                        ..++++.|++.+.+++..+   ...+.||||.|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus       155 ------------------~~~~~~~L~~~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t  212 (240)
T 3eu9_A          155 ------------------SVDPTRLLLTFNVSVNLGD---KYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGES  212 (240)
T ss_dssp             ------------------SSTTHHHHHHTTCCTTCCC---TTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCB
T ss_pred             ------------------hHHHHHHHHhcCCCcchhh---ccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence                              2568888999998888765   33556999999999999999999999999 8899999999


Q ss_pred             hHHHHHHcCChhHHHHHHhcCcchh
Q 037778          276 IFHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       276 ~Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                      |||+|+++|+.+++++|++.+....
T Consensus       213 ~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          213 ALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHHHHHHcCcHHHHHHHHHhhhccC
Confidence            9999999999999999999987654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.5e-36  Score=285.07  Aligned_cols=222  Identities=21%  Similarity=0.173  Sum_probs=193.0

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      +..++||||.|++.|+.+.++.|++.. +..++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   80 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence            345788999999999999999999874 4557888888999999999999999999999998886 78888899999999


Q ss_pred             HHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh
Q 037778          117 ASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ  196 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~  196 (575)
                      +..|+.+++++|++.++                                  +++.+|.+|.||||+|+..++        
T Consensus        81 ~~~~~~~~v~~Ll~~g~----------------------------------~~~~~~~~g~t~L~~A~~~~~--------  118 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGA----------------------------------HVNAVNQNGCTPLHYAASKNR--------  118 (231)
T ss_dssp             HHHTCHHHHHHHHHTTC----------------------------------CTTCCCTTSCCHHHHHHHTTC--------
T ss_pred             HHcCHHHHHHHHHHcCC----------------------------------CCCCCCCCCCCHHHHHHHcCC--------
Confidence            99988888888887644                                  445678889999999999884        


Q ss_pred             hhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCch
Q 037778          197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI  276 (575)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~  276 (575)
                                        .+++++|++.|.+++..+    ..+.||||.|+..|+.++++.|++++++ ++.+|..|+||
T Consensus       119 ------------------~~~~~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  175 (231)
T 3aji_A          119 ------------------HEIAVMLLEGGANPDAKD----HYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTP  175 (231)
T ss_dssp             ------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCH
T ss_pred             ------------------HHHHHHHHHcCCCCCCcC----CCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCH
Confidence                              789999999999888765    3455999999999999999999999999 88999999999


Q ss_pred             HHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          277 FHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       277 Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      ||+|+.+++.+++++|+++|++++.    +|..|+||||+|+..++.+++++|
T Consensus       176 L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~~~i~~lL  224 (231)
T 3aji_A          176 LHLACDEERVEEAKFLVTQGASIYI----ENKEEKTPLQVAKGGLGLILKRLA  224 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999865    999999999999988876655544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.2e-35  Score=281.53  Aligned_cols=76  Identities=22%  Similarity=0.195  Sum_probs=62.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHHC-CCccccccCCCCchHHHHHHcCChhHHHHHH-hcCcchhhhhhcccCCCCcHHHHHh
Q 037778          241 ELIFDAARQGNLEFLLILIREY-PDLIWNIDENGYTIFHTAVLHRRKRIFKLIY-QIGAAKDLILKFEDPKKNNILHLAA  318 (575)
Q Consensus       241 tpLh~Aa~~g~~~iv~~Ll~~~-~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~l~~~~d~~G~T~LHlAa  318 (575)
                      ||||.|+..|+.++++.|++.+ .+ ++.+|..|+||||+|+.+++.+++++|+ +.|++++.    +|.+|+||||+|+
T Consensus       142 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~----~~~~g~t~l~~A~  216 (228)
T 2dzn_A          142 IPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVAL  216 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----BCTTSCBGGGGCS
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc----cCCCCCcHHHHHH
Confidence            6666666667788888888888 55 7888899999999999999999999999 88888764    8899999999987


Q ss_pred             hCC
Q 037778          319 MLP  321 (575)
Q Consensus       319 ~~~  321 (575)
                      +.+
T Consensus       217 ~~~  219 (228)
T 2dzn_A          217 NEQ  219 (228)
T ss_dssp             STT
T ss_pred             HHH
Confidence            653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.8e-35  Score=279.14  Aligned_cols=220  Identities=15%  Similarity=0.189  Sum_probs=160.1

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccc-cccCCChHHHHHH
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQ-ENNVGYTALFFAA   83 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~-~d~~g~TpLh~Aa   83 (575)
                      |+||||.|+..|+.+.++.+++..+...+.. |.+|.||||+|+..|+.+++++|++.....+++. +|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            6788888888888888888888654444434 7888888888888888888888888821255555 7788888888888


Q ss_pred             HcCCHHHHHHHHhcC--ccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           84 ASGMVELAREIMTHN--KAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      ..|+.+++++|++++  +++ +..+..|.||||+|+..|+.+++++|++.+.                            
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------------  131 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGA----------------------------  131 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----------------------------
T ss_pred             HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC----------------------------
Confidence            888888888888887  665 7778888888888888888888888887765                            


Q ss_pred             HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh-hhCChhhhhcccCCC
Q 037778          162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV-VLLSDSRISNLIAEP  240 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~-~~~~~~~~~~~~~~~  240 (575)
                            +++.+|.+|.||||+|+..++                          .+++++|++.| .+++..+    ..|.
T Consensus       132 ------~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~d----~~g~  175 (228)
T 2dzn_A          132 ------SVRIKDKFNQIPLHRAASVGS--------------------------LKLIELLCGLGKSAVNWQD----KQGW  175 (228)
T ss_dssp             ------CSCCCCTTSCCHHHHHHHTTC--------------------------HHHHHHHHTTTCCCSCCCC----TTSC
T ss_pred             ------CccccCCCCCCHHHHHHHcCC--------------------------HHHHHHHHhcCcccccCcC----CCCC
Confidence                  333444445555555554442                          44555555554 4444333    2333


Q ss_pred             hHHHHHHHcCCHHHHHHHH-HHCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778          241 ELIFDAARQGNLEFLLILI-REYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ  294 (575)
Q Consensus       241 tpLh~Aa~~g~~~iv~~Ll-~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  294 (575)
                      ||||+|+..|+.+++++|+ +.|++ ++.+|.+|+||||+|+..   ++.++|++
T Consensus       176 t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          176 TPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            7777777777899999999 88999 889999999999999654   56666665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=294.93  Aligned_cols=214  Identities=16%  Similarity=0.218  Sum_probs=117.3

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCC--------ccccccCCChHHHHHHHcCCH-HHHHHHHhcCccccccCCC
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGD--------LAQENNVGYTALFFAAASGMV-ELAREIMTHNKAIATEQDD  107 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--------l~~~d~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~~~  107 (575)
                      |..+.+||+.|++.|+.++|++|++.  +.+        ++..|..|.||||.|+..++. ++++.|++.|+++ +.+|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~--~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~   84 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEW--TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ   84 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTC--C----------------------------------------CCCCT-TCCCT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHC--CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC
Confidence            44455666666666666666666655  221        344555566666666655543 3556666666664 56666


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcC
Q 037778          108 KRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN  187 (575)
Q Consensus       108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~  187 (575)
                      +|.||||+|+..|+.+++++|++.++                                  +++.++.+|.||+|.|+..+
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a----------------------------------~~~~~~~~g~t~l~~a~~~~  130 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGA----------------------------------NAGARNADQAVPLHLACQQG  130 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTC----------------------------------CTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCC----------------------------------CcCccCCCCCCccccccccC
Confidence            66666666666666666666665544                                  12223333333333333333


Q ss_pred             CCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccc
Q 037778          188 LNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIW  267 (575)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~  267 (575)
                      +                          .++++.|++.|++++..+    ..|.||||+|+..|+.++++.|+++|++ ++
T Consensus       131 ~--------------------------~~~~~~Ll~~g~~~n~~d----~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn  179 (269)
T 4b93_B          131 H--------------------------FQVVKCLLDSNAKPNKKD----LSGNTPLIYACSGGHHELVALLLQHGAS-IN  179 (269)
T ss_dssp             C--------------------------HHHHHHHHHTTCCSCCCC----TTCCCHHHHHHHTTCGGGHHHHHHTTCC-TT
T ss_pred             h--------------------------HHHHHHHHHCCCCCCCCC----CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CC
Confidence            1                          333333333333333322    1223566666666678888888888888 78


Q ss_pred             cccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCC
Q 037778          268 NIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPP  322 (575)
Q Consensus       268 ~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~  322 (575)
                      .+|..|+||||+|+.+|+.+++++|+++|++++.    +|.+|+||||+|+++++
T Consensus       180 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          180 ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----LNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCSGGGSCTTCH
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHhCCc
Confidence            8899999999999999999999999999988754    89999999999987664

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=294.65  Aligned_cols=220  Identities=17%  Similarity=0.183  Sum_probs=158.3

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCc-------ccccCCCCCChHHhHHHHcCCHH-HHHHHHHcCCCCCcccccc
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGE-------IRAPISKRKDTALHIAAAAKQYG-FVKELVQRMEPGDLAQENN   73 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~-------~~~~~~~~g~TpLh~Aa~~g~~~-~v~~Ll~~~~~~~l~~~d~   73 (575)
                      +.++.++|+.||..|+.++|+.||+.....       ++.. +..|.||||.|+..++.+ +++.|++.  |+++|.+|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d~   84 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTSQ   84 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C--CCCTTCCCT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcCC
Confidence            456789999999999999999999853322       3344 778999999999988764 88999998  999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCc
Q 037778           74 VGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDL  153 (575)
Q Consensus        74 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~  153 (575)
                      +|+||||+|+..|+.+++++|++.++++ +..+..|.||+|.|+..++.+++++|++.++                    
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~--------------------  143 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNA--------------------  143 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--------------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCC--------------------
Confidence            9999999999999999999999999996 8899999999999999999999999998755                    


Q ss_pred             HHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhh
Q 037778          154 YDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRI  233 (575)
Q Consensus       154 ~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~  233 (575)
                                    +++.+|.+|.||||+|+..|+                          .+++++|++.|++++..+ 
T Consensus       144 --------------~~n~~d~~g~TpL~~A~~~g~--------------------------~~~v~~Ll~~gadvn~~~-  182 (269)
T 4b93_B          144 --------------KPNKKDLSGNTPLIYACSGGH--------------------------HELVALLLQHGASINASN-  182 (269)
T ss_dssp             --------------CSCCCCTTCCCHHHHHHHTTC--------------------------GGGHHHHHHTTCCTTCBC-
T ss_pred             --------------CCCCCCCCCCCHHHHHHHCCC--------------------------HHHHHHHHHCCCCCCccc-
Confidence                          344566666777777776663                          566667777776666554 


Q ss_pred             hcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHH
Q 037778          234 SNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLI  292 (575)
Q Consensus       234 ~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~L  292 (575)
                         ..|.||||+|+..|+.++++.|+++|+| ++.+|.+|+||||+|+++++  ++++|
T Consensus       183 ---~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          183 ---NKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             ---TTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             ---cCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence               3344888888888899999999999999 89999999999999988764  44444

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.7e-35  Score=290.08  Aligned_cols=238  Identities=12%  Similarity=0.031  Sum_probs=212.0

Q ss_pred             HHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHH
Q 037778           13 ALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAR   92 (575)
Q Consensus        13 a~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~   92 (575)
                      +..++.+.++.+|.+.  +++.+ |.+|.||||+|+..|+.++|++|++.  |.+++.+|  |.||||+|+..|+.++++
T Consensus         7 i~~~~~~~v~~lL~~~--~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~--g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK--DTFKA-DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             GGGCCHHHHHHHHHST--TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCCT--TCCHHHHHTTSSSCHHHH
T ss_pred             HHhcCHHHHHHHHHhC--CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCC--CCCHHHHHHHcCCHHHHH
Confidence            4567788888888864  57776 99999999999999999999999999  89988874  999999999999999999


Q ss_pred             HHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCch-hhHHHHHHHhCcHHHHHHHHHhhhccccc
Q 037778           93 EIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDR-SHLLVTLIQTDLYDVALRVFEDLHEKSAI  170 (575)
Q Consensus        93 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g-~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~  170 (575)
                      +|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..| .||||.|+..++.+++++|+++  +... 
T Consensus        80 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~--g~~~-  155 (285)
T 3kea_A           80 ILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPST-  155 (285)
T ss_dssp             HHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT--SCTT-
T ss_pred             HHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCcc-
Confidence            999999996 8899999999999999999999999999998 78888888 8999999999999999999998  4433 


Q ss_pred             cccC-CCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChH-HHHHHH
Q 037778          171 GRAA-NEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPEL-IFDAAR  248 (575)
Q Consensus       171 ~~d~-~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tp-Lh~Aa~  248 (575)
                       .+. .|.||||+|+..++                          .+++++|++.|++++..+    ..|.|| ||+|+.
T Consensus       156 -~~~~~g~t~L~~A~~~g~--------------------------~~~v~~Ll~~gad~n~~~----~~g~t~~L~~A~~  204 (285)
T 3kea_A          156 -FDLAILLSCIHITIKNGH--------------------------VDMMILLLDYMTSTNTNN----SLLFIPDIKLAID  204 (285)
T ss_dssp             -CCCSTHHHHHHHHHHTTC--------------------------HHHHHHHHHHHHHTCTTC----CCBCCTTHHHHHH
T ss_pred             -ccccCCccHHHHHHHcCh--------------------------HHHHHHHHHcCCCCCccc----CCCCChHHHHHHH
Confidence             333 89999999999994                          899999999999998876    344476 999999


Q ss_pred             cCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778          249 QGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       249 ~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                      .|+.+++++|+++|++ ++..|       +.|+..|+.+++++|+++|++.+
T Consensus       205 ~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          205 NKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             HTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999 67766       46678999999999999998774

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.5e-34  Score=274.88  Aligned_cols=217  Identities=19%  Similarity=0.162  Sum_probs=174.9

Q ss_pred             CCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHH
Q 037778           16 GDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIM   95 (575)
Q Consensus        16 g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll   95 (575)
                      |+.++++.+++. +.+++...|.+|.||||+|+..|+.+++++|+++  +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            567778877774 6677766588899999999999999999999998  8899999999999999999999999999999


Q ss_pred             hcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCC
Q 037778           96 THNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAAN  175 (575)
Q Consensus        96 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~  175 (575)
                      +.++...+..+..|.||||+|+..|+.+++++|++.++                                  +++.+|.+
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------------------~~~~~~~~  124 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA----------------------------------DVNAVDDL  124 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----------------------------------CTTCBCTT
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC----------------------------------CCcCcCCC
Confidence            99884458888999999999999999999999888755                                  33445556


Q ss_pred             CCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHH
Q 037778          176 EETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFL  255 (575)
Q Consensus       176 g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv  255 (575)
                      |.||||+|+..++                          .+++++|++.|++++..+    ..+.||||+|++.|+.+++
T Consensus       125 g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v  174 (223)
T 2f8y_A          125 GKSALHWAAAVNN--------------------------VDAAVVLLKNGANKDMQN----NREETPLFLAAREGSYETA  174 (223)
T ss_dssp             SCBHHHHHHHTTC--------------------------HHHHHHHHHTTCCTTCCC----TTCCCHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHcCC--------------------------HHHHHHHHHcCCCCCCcC----CCCcCHHHHHHHcCCHHHH
Confidence            6666666666652                          566666666666665543    2334788888888889999


Q ss_pred             HHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778          256 LILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       256 ~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                      ++|++++++ ++.+|..|+||||+|+++++.+++++|+++|+...
T Consensus       175 ~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          175 KVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            999999998 78899999999999999999999999999988653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.8e-35  Score=290.69  Aligned_cols=245  Identities=18%  Similarity=0.207  Sum_probs=209.2

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .|.||||.|+..|+.+.++.|++. +.+++.. |.+|.||||+|+..|+.++|++|+++  |++++.+|..|.||||+|+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHH
Confidence            578999999999999999999985 7889887 89999999999999999999999998  9999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      ..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.++....  .+..+..+.++++        ..+..++
T Consensus       115 ~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l  185 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWL  185 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHH
Confidence            999999999999999996 8899999999999999999999999987655  2222223333332        3344556


Q ss_pred             HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778          162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE  241 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t  241 (575)
                      .. ........+..|.||||+|+..|+                          .+++++|++.|++++..+    ..|.|
T Consensus       186 ~~-~~~~~~~~~~~g~t~L~~A~~~g~--------------------------~~~v~~Ll~~g~d~~~~d----~~g~t  234 (299)
T 1s70_B          186 NS-GHINDVRHAKSGGTALHVAAAKGY--------------------------TEVLKLLIQARYDVNIKD----YDGWT  234 (299)
T ss_dssp             HH-TCCCCCCCTTTCCCHHHHHHHHTC--------------------------HHHHHHHHTTTCCTTCCC----TTCCC
T ss_pred             hc-cCcchhhhcCCCCCHHHHHHHCCc--------------------------HHHHHHHHHcCCCCCCcC----CCCCc
Confidence            65 455556678899999999999994                          799999999999998766    34569


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778          242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ  294 (575)
Q Consensus       242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  294 (575)
                      |||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.. .+.++.+++
T Consensus       235 pL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~-~~~l~~l~~  285 (299)
T 1s70_B          235 PLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADEDI-LGYLEELQK  285 (299)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCSGG-GHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence            99999999999999999999999 8999999999999997643 344444444

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-35  Score=299.35  Aligned_cols=253  Identities=13%  Similarity=0.048  Sum_probs=204.0

Q ss_pred             cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcccc-----------------ccCCCh
Q 037778           15 TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQE-----------------NNVGYT   77 (575)
Q Consensus        15 ~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~-----------------d~~g~T   77 (575)
                      ....++++.+++ .|.+++.. +..|.|++|     |+.++|+.|+++  |.+.+..                 .....+
T Consensus        29 ~~~~dlv~~ll~-~ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (327)
T 1sw6_A           29 TFTHDLTSDFLS-SPLKIMKA-LPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ   99 (327)
T ss_dssp             ECCTTCCCSTTT-SSCCCEEC-BCCCCCCCH-----HHHHHHHHHHHH--HHC---------------------------
T ss_pred             hhcCchHHHHhh-CCcccccC-CCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhcccccccccccCCccc
Confidence            455667877777 69999998 899999988     999999999998  6665431                 111223


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCcccccc-CCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCc--
Q 037778           78 ALFFAAASGMVELAREIMTHNKAIATE-QDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL--  153 (575)
Q Consensus        78 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~--  153 (575)
                      .+|.|+..+..++++.|++.+.++ +. +|..|.||||+|+..|+.++|++|+++++ .+..+.+|.||||+|+..|+  
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            458888888999999999999997 77 89999999999999999999999999999 88899999999999999988  


Q ss_pred             -HHHHHHHHHhhhccccccccCCCCcHHHHHHh----cCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHH----
Q 037778          154 -YDVALRVFEDLHEKSAIGRAANEETALHALAR----KNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEK----  224 (575)
Q Consensus       154 -~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~----  224 (575)
                       .++++.|++. ...+++.+|.+|+||||+|+.    .++                          .+++++|++.    
T Consensus       179 ~~~~~~~ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~g~--------------------------~~~v~~Ll~~~~~~  231 (327)
T 1sw6_A          179 DSGTFEALLDY-LYPCLILEDSMNRTILHHIIITSGMTGC--------------------------SAAAKYYLDILMGW  231 (327)
T ss_dssp             HTTCHHHHHHH-HGGGGGEECTTCCCHHHHHHHHHTSTTC--------------------------HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHh-hhccccCCCCCCCCHHHHHHHHcccccc--------------------------HHHHHHHHHHHHHH
Confidence             7888999988 668899999999999999998    553                          6788888877    


Q ss_pred             ----------------hhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhH
Q 037778          225 ----------------VVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRI  288 (575)
Q Consensus       225 ----------------~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~i  288 (575)
                                      +++++..+    ..+.||||.|+.      +++|+++  + ++.+|.+|+||||+|+++|+.++
T Consensus       232 ~~~~~~~~i~~~~~~~g~~~~~~~----~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~  298 (327)
T 1sw6_A          232 IVKKQNRPIQSGTNEKESKPNDKN----GERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISI  298 (327)
T ss_dssp             HHHGGGCCEEEC--------------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HhcccchHHHhhhhcccCCccccc----ccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHH
Confidence                            45555444    345599999986      8999998  4 67899999999999999999999


Q ss_pred             HHHHHhcCcchhhhhhcccCCCCcHHHHHhhCC
Q 037778          289 FKLIYQIGAAKDLILKFEDPKKNNILHLAAMLP  321 (575)
Q Consensus       289 v~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~  321 (575)
                      +++|+++|++++.    +|.+|+||||+|++.|
T Consensus       299 v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          299 VDALLDYGADPFI----ANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHTTCCTTC----CCTTSCCGGGGTCC--
T ss_pred             HHHHHHcCCCCcc----cCCCCCCHHHHHHhcC
Confidence            9999999999865    9999999999999865

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.3e-34  Score=281.25  Aligned_cols=230  Identities=11%  Similarity=0.115  Sum_probs=202.6

Q ss_pred             HcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHH
Q 037778           49 AAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL  128 (575)
Q Consensus        49 ~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  128 (575)
                      ...+.+-+..++..  + +++.+|.+|.||||+|+..|+.+++++|++.|+++ +..  +|.||||+|+..|+.+++++|
T Consensus         8 ~~~~~~~v~~lL~~--~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            8 NTWKSKQLKSFLSS--K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GGCCHHHHHHHHHS--T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             HhcCHHHHHHHHHh--C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHH
Confidence            34455555555554  2 68999999999999999999999999999999986 555  499999999999999999999


Q ss_pred             Hhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCC-CcHHHHHHhcCCCCcccchhhhhhhccchh
Q 037778          129 YGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANE-ETALHALARKNLNYSHFTKQYQRGFFSAKD  206 (575)
Q Consensus       129 l~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g-~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~  206 (575)
                      ++.++ .+..+..|.||||+|+..++.++++.|+++  +.+++.+|..| .||||+|+..++                  
T Consensus        82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~------------------  141 (285)
T 3kea_A           82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLND------------------  141 (285)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTC------------------
T ss_pred             HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCC------------------
Confidence            99999 788899999999999999999999999998  99999999999 899999999994                  


Q ss_pred             hhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCch-HHHHHHcCC
Q 037778          207 IENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI-FHTAVLHRR  285 (575)
Q Consensus       207 ~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~-Lh~A~~~~~  285 (575)
                              .+++++|++.|++....     ..|.||||.|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+.+++
T Consensus       142 --------~~~v~~Ll~~g~~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          142 --------VSIVSYFLSEIPSTFDL-----AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             --------HHHHHHHHTTSCTTCCC-----STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTC
T ss_pred             --------HHHHHHHHhCCCccccc-----cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCC
Confidence                    89999999998776332     1445999999999999999999999999 89999999998 999999999


Q ss_pred             hhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          286 KRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       286 ~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      .+++++|+++|++++.    +|       +.|+..++.+++++|
T Consensus       208 ~~~v~~Ll~~gad~~~----~~-------~~a~~~~~~~iv~~L  240 (285)
T 3kea_A          208 IEMLQALFKYDINIYS----AN-------LENVLLDDAEIAKMI  240 (285)
T ss_dssp             HHHHHHHTTSCBCSTT----TT-------GGGGTTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCC----CC-------hhhhhcCCHHHHHHH
Confidence            9999999999999865    55       466777877766655

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.1e-33  Score=267.53  Aligned_cols=226  Identities=19%  Similarity=0.183  Sum_probs=203.7

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALF   80 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh   80 (575)
                      +.+|.++||.|+..|+.+.++.+++ .+.+++.+ +..|.||||+|+..|+.+++++|++.  +.+++..+ ..|.||||
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVE-AGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHH-cCCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhH
Confidence            3578899999999999999999998 47888887 89999999999999999999999999  77766544 55999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCc-HHHHH
Q 037778           81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL-YDVAL  158 (575)
Q Consensus        81 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~-~~~~~  158 (575)
                      +|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++.+. .+..+.+|.||||.|+..+. .++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR  160 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence            999999999999999999996 8899999999999999999999999999998 78889999999999997666 78888


Q ss_pred             HHHHhhhccccccccC-CCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhccc
Q 037778          159 RVFEDLHEKSAIGRAA-NEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLI  237 (575)
Q Consensus       159 ~Ll~~~~~~~~~~~d~-~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~  237 (575)
                      .|++.  +.+++..+. .|.||||+|+..++                          .+++++|++.|++++..+    .
T Consensus       161 ~L~~~--~~~~~~~~~~~g~t~L~~A~~~~~--------------------------~~~v~~Ll~~g~~~~~~~----~  208 (240)
T 3eu9_A          161 LLLTF--NVSVNLGDKYHKNTALHWAVLAGN--------------------------TTVISLLLEAGANVDAQN----I  208 (240)
T ss_dssp             HHHHT--TCCTTCCCTTTCCCHHHHHHHHTC--------------------------HHHHHHHHHHTCCTTCBC----T
T ss_pred             HHHhc--CCCcchhhccCCCcHHHHHHHcCC--------------------------HHHHHHHHHcCCCCCCcC----C
Confidence            88887  888888887 99999999999994                          899999999999988765    4


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHCCC
Q 037778          238 AEPELIFDAARQGNLEFLLILIREYPD  264 (575)
Q Consensus       238 ~~~tpLh~Aa~~g~~~iv~~Ll~~~~d  264 (575)
                      .|.||+|+|++.|+.+++++|++.+++
T Consensus       209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          209 KGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            456999999999999999999999877

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.3e-34  Score=276.29  Aligned_cols=225  Identities=16%  Similarity=0.161  Sum_probs=189.8

Q ss_pred             CCCCCChHHhHHHHcCCHHHHHHHHHcCC--CCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHH
Q 037778           36 ISKRKDTALHIAAAAKQYGFVKELVQRME--PGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPI  113 (575)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~--~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  113 (575)
                      .|.+|.||||+|+..|+.+++++|++...  +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHH
Confidence            38899999999999999999999998741  2378999999999999999999999999999999996 88999999999


Q ss_pred             HHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcc
Q 037778          114 DLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSH  192 (575)
Q Consensus       114 ~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~  192 (575)
                      |+|+..|+.+++++|++.++ ..                             .+...+..+..|.||||+|+..++    
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~-----------------------------~~~~~~~~~~~g~t~L~~A~~~~~----  129 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPH-----------------------------LHSILKATNYNGHTCLHLASIHGY----  129 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTS-----------------------------SSCGGGCCCTTCCCHHHHHHHTTC----
T ss_pred             HHHHHcCCHHHHHHHHhcccchh-----------------------------HHHHhhccCCCCCCHHHHHHHcCC----
Confidence            99999999999999999876 11                             133445678889999999999884    


Q ss_pred             cchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCC
Q 037778          193 FTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDEN  272 (575)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~  272 (575)
                                            .+++++|++.|++++..+   ...|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus       130 ----------------------~~~v~~Ll~~g~~~~~~~---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~  183 (236)
T 1ikn_D          130 ----------------------LGIVELLVSLGADVNAQE---PCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQ  183 (236)
T ss_dssp             ----------------------HHHHHHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTT
T ss_pred             ----------------------HHHHHHHHHcCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCC
Confidence                                  789999999998888765   32456999999999999999999999999 8999999


Q ss_pred             CCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCC
Q 037778          273 GYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPP  322 (575)
Q Consensus       273 G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~  322 (575)
                      |+||||+|+.+++.+++++|+++|++...  ..++.+|.||.+.+.....
T Consensus       184 g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQ--MLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             CCCGGGGCTTSSCHHHHHHHHTTSCGGGS--SCCCCCTTTCCCCC-----
T ss_pred             CCCHHHHHHccCchHHHHHHHHcchhhhh--cCCccchHHHHhhhccccc
Confidence            99999999999999999999999998763  4589999999988765543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.7e-33  Score=262.98  Aligned_cols=208  Identities=15%  Similarity=0.133  Sum_probs=178.2

Q ss_pred             CCHHHHHHHHHcCCCCCcccc-ccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHH
Q 037778           51 KQYGFVKELVQRMEPGDLAQE-NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLY  129 (575)
Q Consensus        51 g~~~~v~~Ll~~~~~~~l~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  129 (575)
                      |+.+++++|++.  +.+++.. |.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            677888888887  6776654 788888888888888888888888888886 778888888888888888888888888


Q ss_pred             hccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhH
Q 037778          130 GQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIEN  209 (575)
Q Consensus       130 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (575)
                      +.++                                 ..++.++.+|.||||+|+..++                     
T Consensus        79 ~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~---------------------  104 (223)
T 2f8y_A           79 RNRA---------------------------------TDLDARMHDGTTPLILAARLAV---------------------  104 (223)
T ss_dssp             HBTT---------------------------------SCTTCCCTTCCCHHHHHHHHTC---------------------
T ss_pred             HcCC---------------------------------CCcccCCCCCCcHHHHHHHhCc---------------------
Confidence            7643                                 3556778899999999999884                     


Q ss_pred             hhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHH
Q 037778          210 KRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIF  289 (575)
Q Consensus       210 ~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv  289 (575)
                           .+++++|++.+++++..+    ..+.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+.+++.+++
T Consensus       105 -----~~~~~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v  174 (223)
T 2f8y_A          105 -----EGMLEDLINSHADVNAVD----DLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETA  174 (223)
T ss_dssp             -----HHHHHHHHHTTCCTTCBC----TTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             -----HHHHHHHHHcCCCCcCcC----CCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHH
Confidence                 789999999999888765    3455999999999999999999999999 889999999999999999999999


Q ss_pred             HHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          290 KLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       290 ~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      ++|+++|++++.    +|..|+||||+|++.++.+++++|
T Consensus       175 ~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~~~i~~~L  210 (223)
T 2f8y_A          175 KVLLDHFANRDI----TDHMDRLPRDIAQERMHHDIVRLL  210 (223)
T ss_dssp             HHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCCCcc----ccccCCCHHHHHHHhcchHHHHHH
Confidence            999999999865    899999999999999998877665

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=2.7e-31  Score=247.95  Aligned_cols=199  Identities=20%  Similarity=0.153  Sum_probs=147.3

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      .++.||||.|+..|+.+.++.++++.+.+++.. |.+|.||||+|+..|+.+++++|+++  |.+++.+|..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A   79 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDSPYLYA   79 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHH
Confidence            356677777777777777777777666567666 77777777777777777777777777  777777777777777777


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFE  162 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  162 (575)
                      +..|+.+++++|++.+...++..|..|.||||+|+..|+.+++++|++.+                              
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------------------------------  129 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG------------------------------  129 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC------------------------------
T ss_pred             HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC------------------------------
Confidence            77777777777775444323667777777777777777777777776653                              


Q ss_pred             hhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChH
Q 037778          163 DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPEL  242 (575)
Q Consensus       163 ~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tp  242 (575)
                         +.+++.+|.+|.||||+|+..++                                                 +    
T Consensus       130 ---~~~~~~~~~~g~t~L~~A~~~~~-------------------------------------------------~----  153 (201)
T 3hra_A          130 ---REDIDFQNDFGYTALIEAVGLRE-------------------------------------------------G----  153 (201)
T ss_dssp             ---CCCTTCCCTTSCCHHHHHHHSSC-------------------------------------------------C----
T ss_pred             ---CCCcCCCCCCCCCHHHHHHHhcc-------------------------------------------------c----
Confidence               24556677778888888776651                                                 0    


Q ss_pred             HHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 037778          243 IFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIG  296 (575)
Q Consensus       243 Lh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  296 (575)
                           ..++.+++++|+++|++ ++.+|..|+||||+|+++|+.+++++|+++|
T Consensus       154 -----~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          154 -----NQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             -----SHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             -----hhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                 01237888899999888 7888999999999999999999999998875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.1e-33  Score=283.13  Aligned_cols=261  Identities=8%  Similarity=-0.022  Sum_probs=201.3

Q ss_pred             CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCcccccc-------------
Q 037778           38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATE-------------  104 (575)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-------------  104 (575)
                      ....+|+|    ..+.++|++|++.  |++++.+|..|.|+++     |+.++++.|+++|.+. +.             
T Consensus        21 ~~~~~~~~----~~~~dlv~~ll~~--ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~~   88 (327)
T 1sw6_A           21 DRTAGPII----TFTHDLTSDFLSS--PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP-EIQEMPTSLNNDSSN   88 (327)
T ss_dssp             ----CCEE----ECCTTCCCSTTTS--SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------
T ss_pred             cccccchh----hhcCchHHHHhhC--CcccccCCCCCCcccC-----chhHHHHHHHHhccCC-ccccchHhhhccccc
Confidence            34566666    4667889999999  9999999999999988     9999999999998763 22             


Q ss_pred             ----CCCCCCcHHHHHHHcCChHHHHHHHhccc-ccc-CcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCc
Q 037778          105 ----QDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSL-NDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEET  178 (575)
Q Consensus       105 ----~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~-~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~t  178 (575)
                          ......+.+|+|+..+..++++.|++.+. .+. .+.+|.||||+|+..|+.+++++|+++  +.+++.+|.+|+|
T Consensus        89 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~T  166 (327)
T 1sw6_A           89 RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGES  166 (327)
T ss_dssp             ---------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCC
T ss_pred             ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC
Confidence                11122234588888888999999999998 777 899999999999999999999999998  8999999999999


Q ss_pred             HHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh-hhCChhhhhcccCCChHHHHHHH----cCCHH
Q 037778          179 ALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV-VLLSDSRISNLIAEPELIFDAAR----QGNLE  253 (575)
Q Consensus       179 pLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~-~~~~~~~~~~~~~~~tpLh~Aa~----~g~~~  253 (575)
                      |||+|+..+                       +....+.++.|++.+ .+++..+    ..|.||||+|+.    .|+.+
T Consensus       167 pLh~A~~~g-----------------------~~~~~~~~~~ll~~~~~~~~~~d----~~g~tpLh~A~~~~~~~g~~~  219 (327)
T 1sw6_A          167 CLVKAVKSV-----------------------NNYDSGTFEALLDYLYPCLILED----SMNRTILHHIIITSGMTGCSA  219 (327)
T ss_dssp             HHHHHHHSS-----------------------HHHHTTCHHHHHHHHGGGGGEEC----TTCCCHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHhc-----------------------ccccHHHHHHHHHhhhccccCCC----CCCCCHHHHHHHHccccccHH
Confidence            999999988                       111245667777776 4555544    445699999999    99999


Q ss_pred             HHHHHHHH--------------------CCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcH
Q 037778          254 FLLILIRE--------------------YPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNI  313 (575)
Q Consensus       254 iv~~Ll~~--------------------~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~  313 (575)
                      +++.|++.                    +++ ++.+|..|+||||.|+.      +++|++++  +    |.+|.+|+||
T Consensus       220 ~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~--~----n~~d~~G~Tp  286 (327)
T 1sw6_A          220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANM--L----NAQDSNGDTC  286 (327)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHHT--T----TCCCTTSCCH
T ss_pred             HHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhC--C----CCCCCCCCCH
Confidence            99999988                    677 78899999999999985      89999883  3    5699999999


Q ss_pred             HHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHHH
Q 037778          314 LHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFTR  371 (575)
Q Consensus       314 LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~~  371 (575)
                      ||+|+..|+.++++.|                   +..|++++.+|++|+||+++|.+
T Consensus       287 Lh~A~~~g~~~~v~~L-------------------l~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          287 LNIAARLGNISIVDAL-------------------LDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHHHHHCCHHHHHHH-------------------HHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             HHHHHHcCCHHHHHHH-------------------HHcCCCCcccCCCCCCHHHHHHh
Confidence            9999999998776665                   45799999999999999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.9e-31  Score=247.81  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=145.5

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +..|+||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|++.. +.+++.+|..|.||||+
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~  112 (201)
T 3hra_A           36 DTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHA-TPDLNKHNRYGGNALIP  112 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCSHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcc-CcccccccCCCCcHHHH
Confidence            4678999999999999999999998 58899987 899999999999999999999999764 78999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcC-ccccccCCCCCCcHHHHHHHcCC-----hHHHHHHHhccc-cccCcCchhhHHHHHHHhCcH
Q 037778           82 AAASGMVELAREIMTHN-KAIATEQDDKRVLPIDLAASLGH-----EDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLY  154 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~  154 (575)
                      |+..|+.+++++|++.+ .++ +.+|..|.||||+|+..++     .+++++|++.++ .+..+.+|.||||+|+..++.
T Consensus       113 A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  191 (201)
T 3hra_A          113 AAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT  191 (201)
T ss_dssp             HHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999 564 8999999999999999998     899999999988 777888888999999999999


Q ss_pred             HHHHHHHHh
Q 037778          155 DVALRVFED  163 (575)
Q Consensus       155 ~~~~~Ll~~  163 (575)
                      ++++.|+++
T Consensus       192 ~~~~~Ll~~  200 (201)
T 3hra_A          192 EISKILAQY  200 (201)
T ss_dssp             HHHHHHHTC
T ss_pred             hHHHHHHhc
Confidence            988888864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.4e-32  Score=263.70  Aligned_cols=214  Identities=12%  Similarity=0.018  Sum_probs=162.3

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCC---CcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHE---GEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTA   78 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~---~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~Tp   78 (575)
                      +.+|+||||.|+..|+.++++.+++...   .+++.+ |..|.||||+|+..|+.+++++|+++  |++++.+|..|.||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTP   81 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCH
Confidence            5789999999999999999999988643   367777 89999999999999999999999998  89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCcc-----ccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcC-chhhHHHHHHHh
Q 037778           79 LFFAAASGMVELAREIMTHNKA-----IATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDE-DRSHLLVTLIQT  151 (575)
Q Consensus        79 Lh~Aa~~g~~~iv~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~-~g~t~L~~a~~~  151 (575)
                      ||+|+..|+.+++++|++.+++     ..+..+..|.||||+|+..|+.+++++|++.++ .+..+. .|.||||+|+..
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            9999999999999999999864     236788889999999999999999999998876 444443 555555555555


Q ss_pred             CcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChh
Q 037778          152 DLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDS  231 (575)
Q Consensus       152 ~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~  231 (575)
                      ++.+++++|++.  +.+++.+|..|.                                                      
T Consensus       162 ~~~~~v~~Ll~~--ga~~~~~~~~g~------------------------------------------------------  185 (236)
T 1ikn_D          162 QNPDLVSLLLKC--GADVNRVTYQGY------------------------------------------------------  185 (236)
T ss_dssp             TCHHHHHHHHTT--TCCSCCCCTTCC------------------------------------------------------
T ss_pred             CCHHHHHHHHHc--CCCCCcccCCCC------------------------------------------------------
Confidence            555555555554  444444444444                                                      


Q ss_pred             hhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCcc-ccccCCCCchHHHHHHc
Q 037778          232 RISNLIAEPELIFDAARQGNLEFLLILIREYPDLI-WNIDENGYTIFHTAVLH  283 (575)
Q Consensus       232 ~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~-~~~d~~G~t~Lh~A~~~  283 (575)
                               ||||+|+..|+.+++++|+++|++.. ...+..|.|+.+.+...
T Consensus       186 ---------tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          186 ---------SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             ---------CGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             ---------CHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence                     55555555667777777777777632 35677788877665443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.8e-31  Score=259.42  Aligned_cols=199  Identities=20%  Similarity=0.176  Sum_probs=115.1

Q ss_pred             cchHHHHHHHcCCHHHHHHHHh---hCCCcccc----cCCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCCccc----
Q 037778            5 RRLKLYRAALTGDWAVARGIYD---VHEGEIRA----PISKRKDTALHIAAAA---KQYGFVKELVQRMEPGDLAQ----   70 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~---~~~~~~~~----~~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~l~~----   70 (575)
                      |+||||.|+..|+.+.++.+++   +.+.+++.    + |.+|.||||+|+..   |+.++|++|++.  +.+++.    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~-d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~~~   78 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNACIMPLLQI--DKDSGNPKPL   78 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB-TTTTBCHHHHHHHTCBTTBCTTHHHHHHH--HHHTTCSSCG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC-CCCCCCHHHHHHHccccchHHHHHHHHhc--CCcccchhhh
Confidence            5566666666666653332222   23455554    3 55566666666665   666666666655  444332    


Q ss_pred             -------cccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCC-------------CCcHHHHHHHcCChHHHHHHHh
Q 037778           71 -------ENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDK-------------RVLPIDLAASLGHEDMVVYLYG  130 (575)
Q Consensus        71 -------~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~~v~~Ll~  130 (575)
                             +|..|.||||+|+..|+.+++++|+++|+++ +..+..             |.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                   2244556666666666666666666555554 444443             4444444444444444444444


Q ss_pred             ccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHh
Q 037778          131 QTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENK  210 (575)
Q Consensus       131 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (575)
                      .+.                             .  +.+++.+|.+|+||||+|+..+                       
T Consensus       158 ~~~-----------------------------~--ga~~n~~d~~g~TpLh~A~~~~-----------------------  183 (256)
T 2etb_A          158 NPH-----------------------------Q--PASLEATDSLGNTVLHALVMIA-----------------------  183 (256)
T ss_dssp             CSS-----------------------------C--CCCTTCCCTTSCCHHHHHHHHC-----------------------
T ss_pred             ccc-----------------------------c--CCCcCccCCCCCCHHHHHHHcc-----------------------
Confidence            210                             2  5566677777777777777632                       


Q ss_pred             hHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHH-------HHHHHHHHCCCcc-------ccccCCCCch
Q 037778          211 RQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLE-------FLLILIREYPDLI-------WNIDENGYTI  276 (575)
Q Consensus       211 ~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~-------iv~~Ll~~~~d~~-------~~~d~~G~t~  276 (575)
                                                            .|+.+       +++.|+++|++ +       +.+|..|+||
T Consensus       184 --------------------------------------~~~~~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tp  224 (256)
T 2etb_A          184 --------------------------------------DNSPENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTP  224 (256)
T ss_dssp             --------------------------------------CSCHHHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCH
T ss_pred             --------------------------------------cCCchhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCH
Confidence                                                  12222       55555555555 3       6778888888


Q ss_pred             HHHHHHcCChhHHHHHHhcCcchh
Q 037778          277 FHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       277 Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                      ||+|+++|+.+++++|+++|.+..
T Consensus       225 L~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          225 LKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCC
Confidence            888888888888888888877654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.5e-31  Score=256.52  Aligned_cols=167  Identities=16%  Similarity=0.126  Sum_probs=145.4

Q ss_pred             CcccchHHHHHHHc---CCHHHHHHHHhhCCCccccc----------CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCc
Q 037778            2 IRRRRLKLYRAALT---GDWAVARGIYDVHEGEIRAP----------ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL   68 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~---g~~~~v~~lL~~~~~~~~~~----------~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l   68 (575)
                      +..|+||||+|+..   |+.++++.|++. +.+++..          .|..|.||||+|+..|+.+++++|+++  |+++
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~  116 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADV  116 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence            45799999999999   999999999985 6666532          136799999999999999999999999  8999


Q ss_pred             cccccC-------------CChHHHHHHHcCCHHHHHHHHh---cCccccccCCCCCCcHHHHHHH--cCChH-------
Q 037778           69 AQENNV-------------GYTALFFAAASGMVELAREIMT---HNKAIATEQDDKRVLPIDLAAS--LGHED-------  123 (575)
Q Consensus        69 ~~~d~~-------------g~TpLh~Aa~~g~~~iv~~Ll~---~~~~~~~~~~~~g~tpL~~A~~--~g~~~-------  123 (575)
                      +.+|..             |.||||+|+..|+.+++++|++   .|+++ +.+|..|.||||+|+.  .++.+       
T Consensus       117 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~  195 (256)
T 2etb_A          117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIH  195 (256)
T ss_dssp             TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence            999886             9999999999999999999999   89996 9999999999999999  77877       


Q ss_pred             HHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhcccc-------ccccCCCCcHHHHHHhcCCCCcccchh
Q 037778          124 MVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSA-------IGRAANEETALHALARKNLNYSHFTKQ  196 (575)
Q Consensus       124 ~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~-------~~~d~~g~tpLh~a~~~~~~~~~~~~~  196 (575)
                      ++++|++.+                                  .++       +.+|.+|.||||+|+..|+        
T Consensus       196 iv~~Ll~~g----------------------------------a~~~~~~~~~~~~d~~g~tpL~~A~~~g~--------  233 (256)
T 2etb_A          196 MYDGLLQMG----------------------------------ARLCPTVQLEEISNHQGLTPLKLAAKEGK--------  233 (256)
T ss_dssp             HHHHHHHHH----------------------------------HHHSTTCCGGGCCCTTSCCHHHHHHHTTC--------
T ss_pred             HHHHHHHcC----------------------------------CCcccccccccccCCCCCCHHHHHHHhCC--------
Confidence            666666554                                  344       6889999999999999994        


Q ss_pred             hhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778          197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~  232 (575)
                                        .+++++|+++|.+.....
T Consensus       234 ------------------~~~v~~Ll~~g~~~~~~~  251 (256)
T 2etb_A          234 ------------------IEIFRHILQREFSGAAAH  251 (256)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHhCCCCCCCcc
Confidence                              899999999998765443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.1e-30  Score=256.26  Aligned_cols=211  Identities=14%  Similarity=0.083  Sum_probs=134.5

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcC--CCCCcc----ccccCCChHHHHHHHc---CCHHHHHHHHhcCccc------
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRM--EPGDLA----QENNVGYTALFFAAAS---GMVELAREIMTHNKAI------  101 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~l~----~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~------  101 (575)
                      |..|+||||.|++.|+.++|+.|++..  .+.+++    .+|..|.||||+|+..   |+.+++++|++.|++.      
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~   89 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF   89 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence            666777777777777777776666531  133333    3466677777777765   7777777777766542      


Q ss_pred             cc----cCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcC--------------chhhHHHHHHHhCcHHHHHHHHH
Q 037778          102 AT----EQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDE--------------DRSHLLVTLIQTDLYDVALRVFE  162 (575)
Q Consensus       102 ~~----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~--------------~g~t~L~~a~~~~~~~~~~~Ll~  162 (575)
                      .+    ..|..|.||||+|+..|+.+++++|++.++ .+..+.              .|.||||+|+..++.+++++|++
T Consensus        90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (273)
T 2pnn_A           90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ  169 (273)
T ss_dssp             HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred             hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            01    145567777777777777777777777766 444444              67788888888888888888887


Q ss_pred             ---hhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCC
Q 037778          163 ---DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAE  239 (575)
Q Consensus       163 ---~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~  239 (575)
                         .  +.+++.+|.+|+||||+|+..++..                 ........+++++|++.|++++...       
T Consensus       170 ~~~~--gad~~~~d~~g~tpLh~A~~~~~~~-----------------~~~~~~~~~~v~~Ll~~ga~~n~~~-------  223 (273)
T 2pnn_A          170 NSWQ--PADISARDSVGNTVLHALVEVADNT-----------------VDNTKFVTSMYNEILILGAKLHPTL-------  223 (273)
T ss_dssp             CSSC--CCCTTCCCTTSCCHHHHHHHHCCSC-----------------HHHHHHHHHHHHHHHHHHHHHCTTC-------
T ss_pred             cccC--CCCceeeCCCCCcHHHHHHHccCcc-----------------hhHHHHHHHHHHHHHHhhhhccccc-------
Confidence               6  7888899999999999999877300                 0001112466667777766655311       


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCc
Q 037778          240 PELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA  297 (575)
Q Consensus       240 ~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  297 (575)
                                              +.++.+|..|+||||+|+++|+.+++++|+++|+
T Consensus       224 ------------------------~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          224 ------------------------KLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             ------------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ------------------------ccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence                                    0013455566666666666666666666666665

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.4e-30  Score=253.93  Aligned_cols=198  Identities=14%  Similarity=0.105  Sum_probs=170.7

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhh---CCCcccc---cCCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCC-----
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDV---HEGEIRA---PISKRKDTALHIAAAA---KQYGFVKELVQRMEPGD-----   67 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~---~~~~~~~---~~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~-----   67 (575)
                      +..|.||||.|+..|+.++|+.|++.   .+.+++.   ..|..|.||||+|+..   |+.++|++|++.  +++     
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~--ga~~~~~~   87 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV--ARKTDSLK   87 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH--HHHTTCHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh--hccccchh
Confidence            56899999999999999999998873   4444432   3378999999999987   999999999998  544     


Q ss_pred             --cc----ccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCC--------------CCCcHHHHHHHcCChHHHHH
Q 037778           68 --LA----QENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDD--------------KRVLPIDLAASLGHEDMVVY  127 (575)
Q Consensus        68 --l~----~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~~v~~  127 (575)
                        ++    .+|..|.||||+|+..|+.+++++|+++|+++ +..+.              .|.||||+|+..|+.+++++
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence              22    26778999999999999999999999999997 77776              79999999999999999999


Q ss_pred             HHh---ccc-cccCcCchhhHHHHHHHhCc---------HHHHHHHHHhhhccccc-------cccCCCCcHHHHHHhcC
Q 037778          128 LYG---QTK-NSLNDEDRSHLLVTLIQTDL---------YDVALRVFEDLHEKSAI-------GRAANEETALHALARKN  187 (575)
Q Consensus       128 Ll~---~~~-~~~~~~~g~t~L~~a~~~~~---------~~~~~~Ll~~~~~~~~~-------~~d~~g~tpLh~a~~~~  187 (575)
                      |++   .++ .+..|.+|.||||+|+..++         .++++.|++.  +.+++       .+|.+|.||||+|+..+
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--ga~~n~~~~~~~~~d~~g~TpL~~A~~~g  244 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL--GAKLHPTLKLEEITNRKGLTPLALAASSG  244 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--HHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh--hhhcccccccccccCCCCCCHHHHHHHhC
Confidence            999   777 88899999999999999887         7999999997  77775       58999999999999999


Q ss_pred             CCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhh-hCCh
Q 037778          188 LNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVV-LLSD  230 (575)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~-~~~~  230 (575)
                      +                          .+++++|+++|+ ++..
T Consensus       245 ~--------------------------~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          245 K--------------------------IGVLAYILQREIHEPEC  262 (273)
T ss_dssp             C--------------------------HHHHHHHHHHHTC----
T ss_pred             h--------------------------HHHHHHHHHCCCCCchh
Confidence            4                          889999999998 4443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=8.6e-30  Score=230.39  Aligned_cols=157  Identities=21%  Similarity=0.260  Sum_probs=147.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC
Q 037778            7 LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG   86 (575)
Q Consensus         7 t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g   86 (575)
                      ++|+.||+.|+.++|+.||+ .+++++.+ |.+|+||||+|+..|+.++++.|++.  +.+++.+|.+|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcC
Confidence            57999999999999999998 58999998 99999999999999999999999999  9999999999999999999999


Q ss_pred             CHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhh
Q 037778           87 MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLH  165 (575)
Q Consensus        87 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  165 (575)
                      +.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.++ .+..|.+|.||||+|+..++.++++.|+++  
T Consensus        82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~--  158 (169)
T 4gpm_A           82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ--  158 (169)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC--
Confidence            999999999999997 9999999999999999999999999999999 888999999999999999999999999997  


Q ss_pred             ccccc
Q 037778          166 EKSAI  170 (575)
Q Consensus       166 ~~~~~  170 (575)
                      |++++
T Consensus       159 GA~ie  163 (169)
T 4gpm_A          159 GGWLE  163 (169)
T ss_dssp             -----
T ss_pred             CCCcC
Confidence            77654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=5.1e-30  Score=249.62  Aligned_cols=199  Identities=15%  Similarity=0.114  Sum_probs=174.0

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHh---hCCCccccc---CCCCCChHHhHHH---HcCCHHHHHHHHHcCCCC------
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYD---VHEGEIRAP---ISKRKDTALHIAA---AAKQYGFVKELVQRMEPG------   66 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~---~~~~~~~~~---~~~~g~TpLh~Aa---~~g~~~~v~~Ll~~~~~~------   66 (575)
                      ++.+.++||.|+..|+.+.++.+++   +.+.+++..   .|..|.||||+|+   +.|+.++|++|++.  ++      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI--AEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH--HHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh--cccccchH
Confidence            5689999999999999998777776   356677654   1377999999999   77999999999998  43      


Q ss_pred             -----CccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCC--------------CCCCcHHHHHHHcCChHHHHH
Q 037778           67 -----DLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD--------------DKRVLPIDLAASLGHEDMVVY  127 (575)
Q Consensus        67 -----~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~~v~~  127 (575)
                           +++.+|..|.||||+|+..|+.+++++|+++|+++ +..+              ..|.||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                 35566779999999999999999999999999997 7777              689999999999999999999


Q ss_pred             HHh---ccc-cccCcCchhhHHHHHHHhCc---------HHHHHHHHHhhhcccc-------ccccCCCCcHHHHHHhcC
Q 037778          128 LYG---QTK-NSLNDEDRSHLLVTLIQTDL---------YDVALRVFEDLHEKSA-------IGRAANEETALHALARKN  187 (575)
Q Consensus       128 Ll~---~~~-~~~~~~~g~t~L~~a~~~~~---------~~~~~~Ll~~~~~~~~-------~~~d~~g~tpLh~a~~~~  187 (575)
                      |++   .++ .+..|.+|.||||+|+..++         .++++.|++.  +.++       +.+|.+|.||||+|+..|
T Consensus       159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK--CAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH--HHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh--CcccccccchhhcccCCCCCHHHHHHHcC
Confidence            999   777 88899999999999998777         6999999997  7777       679999999999999999


Q ss_pred             CCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChh
Q 037778          188 LNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDS  231 (575)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~  231 (575)
                      +                          .+++++|+++|.+....
T Consensus       237 ~--------------------------~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          237 K--------------------------IGIFQHIIRREIADAAA  254 (260)
T ss_dssp             C--------------------------HHHHHHHHHHHHHHHC-
T ss_pred             C--------------------------HHHHHHHHHhCCCcccc
Confidence            4                          89999999999876543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.5e-30  Score=250.82  Aligned_cols=212  Identities=15%  Similarity=0.071  Sum_probs=157.0

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHH----cCCCCCccccc----cCCChHHHHHH---HcCCHHHHHHHHhcCccc----
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQ----RMEPGDLAQEN----NVGYTALFFAA---ASGMVELAREIMTHNKAI----  101 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~----~~~~~~l~~~d----~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~~----  101 (575)
                      +..|+||||.|++.|+.+.++.|++    .  +.+++.++    ..|.||||+|+   +.|+.+++++|++.+++.    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            5678999999999999996555555    7  78888766    67999999999   779999999999987642    


Q ss_pred             ------cccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCc--------------CchhhHHHHHHHhCcHHHHHHH
Q 037778          102 ------ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLND--------------EDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus       102 ------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~--------------~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                            ....|..|.||||+|+..|+.+++++|++.++ .+..+              ..|.||||+|+..|+.++++.|
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                  14455689999999999999999999999998 66655              5688888888888888888888


Q ss_pred             HH---hhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhccc
Q 037778          161 FE---DLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLI  237 (575)
Q Consensus       161 l~---~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~  237 (575)
                      ++   .  +.+++.+|.+|+||||+|+..++.                 .........+++++|++.|++++...     
T Consensus       160 l~~~~~--ga~~~~~d~~g~TpLh~A~~~~~~-----------------~~~~~~~~~~~v~~Ll~~ga~~~~~~-----  215 (260)
T 3jxi_A          160 TENGHK--QADLRRQDSRGNTVLHALVAIADN-----------------TRENTKFVTKMYDLLLIKCAKLFPDT-----  215 (260)
T ss_dssp             HHCSSC--CCCTTCCCTTSCCHHHHHHHHCCS-----------------SHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred             Hhcccc--CCCCcccCCCCCcHHHHHHHhccC-----------------chhHHHHHHHHHHHHHHhCccccccc-----
Confidence            88   6  777778888888888888865520                 00000011345555555554443211     


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778          238 AEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       238 ~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                                                +..+.+|.+|+||||+|+++|+.+++++|+++|.+..
T Consensus       216 --------------------------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          216 --------------------------NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             --------------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --------------------------chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence                                      0125677788888888888888888888888777654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=3.6e-29  Score=226.29  Aligned_cols=158  Identities=20%  Similarity=0.225  Sum_probs=147.1

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH  121 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  121 (575)
                      ++|+.||+.|+.++|+.|++.  |++++.+|.+|+||||+|+..|+.++++.|++.|+++ +.+|.+|.||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence            579999999999999999999  9999999999999999999999999999999999997 9999999999999999999


Q ss_pred             hHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhh
Q 037778          122 EDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRG  200 (575)
Q Consensus       122 ~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~  200 (575)
                      .+++++|++.++ .+..|.+|+||||+|+..|+.++++.|++.  +.+++.+|.+|+||||+|++.++            
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~g~------------  148 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GADVNTSDSDGRTPLDLAREHGN------------  148 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC------------
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCC------------
Confidence            999999999999 888999999999999999999999999997  99999999999999999999994            


Q ss_pred             hccchhhhHhhHHHHHHHHHHHHHhhhCCh
Q 037778          201 FFSAKDIENKRQKALKLVQRLWEKVVLLSD  230 (575)
Q Consensus       201 ~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~  230 (575)
                                    .+++++|+++|++++.
T Consensus       149 --------------~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          149 --------------EEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             --------------HHHHHHHHTC------
T ss_pred             --------------HHHHHHHHHCCCCcCC
Confidence                          7899999999998764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.7e-31  Score=269.76  Aligned_cols=261  Identities=14%  Similarity=0.041  Sum_probs=175.3

Q ss_pred             chHHHHHHH-cCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCC---ccccccCCChHHHH
Q 037778            6 RLKLYRAAL-TGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGD---LAQENNVGYTALFF   81 (575)
Q Consensus         6 ~t~L~~Aa~-~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~---l~~~d~~g~TpLh~   81 (575)
                      .++++.|+. .++.+.++.+++.         +.+++||||+|++.|+.++|++|++.  +..   .+..|..|.||||+
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~--ga~~~~~~~~~~~~~tpL~~  134 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTLCLL--LTSDEIVKVIQAENYQAFRL  134 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHHHHc--CCcHHHHHHhccCCCCHHHH
Confidence            345666665 4666666666553         34456999999999999999999988  442   23445678889999


Q ss_pred             HHHcCCHHHHHHHHhcCccc--cccCCCCCCcHHHHHHHcCChHHHHHHHhccc-ccc--CcCchhhHHHHHH-HhCcHH
Q 037778           82 AAASGMVELAREIMTHNKAI--ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSL--NDEDRSHLLVTLI-QTDLYD  155 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~--~~~~g~t~L~~a~-~~~~~~  155 (575)
                      |++.|+.++|++|+++|++.  .+..+.+ .||||+|+..|+.++|++|+++++ .+.  .+.+|.||||.|+ ..|+.+
T Consensus       135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence            99999999999999998641  1222222 889999999999999999999888 444  7788899999999 999999


Q ss_pred             HHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhc
Q 037778          156 VALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISN  235 (575)
Q Consensus       156 ~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~  235 (575)
                      ++++|++.  +.       +|.||||+|+..|+                          .+++++|++.|++++..+   
T Consensus       214 iv~~Ll~~--ga-------~~~taL~~Aa~~g~--------------------------~evv~lL~~~ga~~~~~~---  255 (376)
T 2aja_A          214 VINFLLDC--PV-------MLAYAEIHEFEYGE--------------------------KYVNPFIARHVNRLKEMH---  255 (376)
T ss_dssp             HHHHHTTS--HH-------HHHHHHHCTTTTTT--------------------------TTHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHhC--CC-------ccchHHHHHHHCCC--------------------------HHHHHHHHhcCccccccc---
Confidence            99999886  43       27899999998884                          678888888888776554   


Q ss_pred             ccCCChHHHHHHHcCCHH------------HHHHHHHHCCCc-------------------cccccCCCCchHHHHHHcC
Q 037778          236 LIAEPELIFDAARQGNLE------------FLLILIREYPDL-------------------IWNIDENGYTIFHTAVLHR  284 (575)
Q Consensus       236 ~~~~~tpLh~Aa~~g~~~------------iv~~Ll~~~~d~-------------------~~~~d~~G~t~Lh~A~~~~  284 (575)
                           ++++.|+..|+.+            +++.|+.++...                   ....+..+.||||+|+..|
T Consensus       256 -----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g  330 (376)
T 2aja_A          256 -----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG  330 (376)
T ss_dssp             -----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHT
T ss_pred             -----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcC
Confidence                 4455555555544            223333333210                   0122346789999999999


Q ss_pred             ChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCcccc
Q 037778          285 RKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNI  328 (575)
Q Consensus       285 ~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~  328 (575)
                      +.+++++|++.|.       .+|..|+|++.+|-..|..+..+.
T Consensus       331 ~~e~v~lLl~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          331 NQGACALLLSIPS-------VLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             CTTHHHHHTTSHH-------HHHSCC------------------
T ss_pred             cHHHHHHHHcChH-------HHHHHHHhccccccccccccHHHH
Confidence            9999999999763       278899999999999998776543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.2e-28  Score=224.01  Aligned_cols=169  Identities=14%  Similarity=0.077  Sum_probs=152.3

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      +.||||.|+..|+.+.++.++++.+..++.+ |..|.||||+|+..|+.+++++|+++  +.+++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHH
Confidence            5689999999999999999999866667776 89999999999999999999999999  89999999999999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778           85 SGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      .|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            99999999999999997 8999999999999999999999999999999 888999999999999999999999999998


Q ss_pred             hhccccccccCCCCcH
Q 037778          164 LHEKSAIGRAANEETA  179 (575)
Q Consensus       164 ~~~~~~~~~d~~g~tp  179 (575)
                        +.....++..|.||
T Consensus       158 --~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 --ILKLFQSNLVPADP  171 (172)
T ss_dssp             --HHHHSCC-------
T ss_pred             --HHHHhcccCCCCCC
Confidence              77777788888776

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.6e-27  Score=215.46  Aligned_cols=155  Identities=17%  Similarity=0.130  Sum_probs=148.9

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .|.||||.|+..|+.+.++.+++. +.+++.+ |..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH
Confidence            588999999999999999999986 7788887 99999999999999999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFE  162 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  162 (575)
                      ..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||+|+|+..++.++++.|++
T Consensus        78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999997 8999999999999999999999999999998 78899999999999999999999999999


Q ss_pred             h
Q 037778          163 D  163 (575)
Q Consensus       163 ~  163 (575)
                      +
T Consensus       157 ~  157 (167)
T 3v31_A          157 H  157 (167)
T ss_dssp             H
T ss_pred             H
Confidence            8

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=3.8e-28  Score=238.58  Aligned_cols=190  Identities=16%  Similarity=0.170  Sum_probs=135.7

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCC--ccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHH
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGD--LAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA  117 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  117 (575)
                      ..+++|.|+..|+.+.++.+++.  +.+  ++.+|.+|+||||+|+..|+.+++++|++.|+..++..|..|.||||+|+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~--~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSAR--LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHH--HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHH--HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            34566666666777766666665  333  66666677777777777777777777777666223666666777777666


Q ss_pred             -----HcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcc
Q 037778          118 -----SLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSH  192 (575)
Q Consensus       118 -----~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~  192 (575)
                           ..++.+++++|++.                                  +...+..|..|.||||+|+..|+    
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~tpLh~A~~~g~----  195 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRL----------------------------------GNINAKASQAGQTALMLAVSHGR----  195 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHH----------------------------------SCTTCCCTTTCCCHHHHHHHTTC----
T ss_pred             HHHhhhhhhHHHHHHHHHc----------------------------------CCCccccCCCCCCHHHHHHHcCC----
Confidence                 33444444444444                                  45555666777777777777773    


Q ss_pred             cchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHH-HCCCccccccC
Q 037778          193 FTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIR-EYPDLIWNIDE  271 (575)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~-~~~d~~~~~d~  271 (575)
                                            .+++++|++.|++++..+    ..|.||||+|+..|+.++++.|++ .+++ ++.+|.
T Consensus       196 ----------------------~~~v~~Ll~~gad~n~~d----~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~  248 (276)
T 4hbd_A          196 ----------------------VDVVKALLACEADVNVQD----DDGSTALMCACEHGHKEIAGLLLAVPSCD-ISLTDR  248 (276)
T ss_dssp             ----------------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTCCCT
T ss_pred             ----------------------HHHHHHHHhCCCCCCCCC----CCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcCcCC
Confidence                                  677777777777776655    344588888888889999999999 7888 788999


Q ss_pred             CCCchHHHHHHcCChhHHHHHHhcC
Q 037778          272 NGYTIFHTAVLHRRKRIFKLIYQIG  296 (575)
Q Consensus       272 ~G~t~Lh~A~~~~~~~iv~~Ll~~~  296 (575)
                      +|+||||+|+.+|+.+++++|++++
T Consensus       249 ~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          249 DGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.9e-27  Score=216.17  Aligned_cols=170  Identities=18%  Similarity=0.175  Sum_probs=129.6

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL  119 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  119 (575)
                      +.||||.|+..|+.++++.|++.. +..++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence            467899999999999999988883 3348888888889999999889999999998888886 78888888888888888


Q ss_pred             CChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhh
Q 037778          120 GHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQR  199 (575)
Q Consensus       120 g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~  199 (575)
                      |+.+++++|++.++                                  +++.+|.+|.                      
T Consensus        80 ~~~~~v~~Ll~~g~----------------------------------~~~~~~~~g~----------------------  103 (172)
T 3v30_A           80 GYTDIVGLLLERDV----------------------------------DINIYDWNGG----------------------  103 (172)
T ss_dssp             TCHHHHHHHHTTTC----------------------------------CTTCCCTTSC----------------------
T ss_pred             CCHHHHHHHHHcCC----------------------------------CCCCCCCCCC----------------------
Confidence            88888888887644                                  2334444444                      


Q ss_pred             hhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHH
Q 037778          200 GFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHT  279 (575)
Q Consensus       200 ~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~  279 (575)
                                                               ||||.|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus       104 -----------------------------------------t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~  141 (172)
T 3v30_A          104 -----------------------------------------TPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDL  141 (172)
T ss_dssp             -----------------------------------------CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             -----------------------------------------CHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHH
Confidence                                                     555555556678888888888888 78888999999999


Q ss_pred             HHHcCChhHHHHHHhcCcchhhhhhcccCCCCcH
Q 037778          280 AVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNI  313 (575)
Q Consensus       280 A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~  313 (575)
                      |+.+++.+++++|++++++...    ++..|.||
T Consensus       142 A~~~~~~~~~~~L~~~~~~~~~----~~~~~~~p  171 (172)
T 3v30_A          142 AVALGYRKVQQVIENHILKLFQ----SNLVPADP  171 (172)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSC----C-------
T ss_pred             HHHhCcHHHHHHHHHHHHHHhc----ccCCCCCC
Confidence            9999999999999998887643    77788776

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=5.1e-28  Score=237.67  Aligned_cols=190  Identities=15%  Similarity=0.174  Sum_probs=173.7

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCC-CcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCC-CccccccCCChHHHHH
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHE-GEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALFFA   82 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~-~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~-~l~~~d~~g~TpLh~A   82 (575)
                      ..+++|.|+..|+.+.++.+++... ..++.+ |.+|+||||+|+..|+.++|++|++.  |. +++.+|..|.||||+|
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDS--GVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--SCCCTTCCCTTSCCHHHHG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCCCCCCCCCCHHHHH
Confidence            4678899999999999999887522 236666 99999999999999999999999999  66 8999999999999999


Q ss_pred             H-----HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHH
Q 037778           83 A-----ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDV  156 (575)
Q Consensus        83 a-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~  156 (575)
                      +     ..++.++++.|++.+... +..+..|.||||+|+..|+.+++++|++.++ .+..|.+|.||||+|+..|+.++
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            9     678999999999999875 8889999999999999999999999999999 88899999999999999999999


Q ss_pred             HHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh
Q 037778          157 ALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV  225 (575)
Q Consensus       157 ~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~  225 (575)
                      ++.|++. .+.+++.+|.+|.||||+|+..|+                          .+++++|++++
T Consensus       232 v~~Ll~~-~gad~~~~d~~g~TpL~~A~~~g~--------------------------~~iv~~Ll~~~  273 (276)
T 4hbd_A          232 AGLLLAV-PSCDISLTDRDGSTALMVALDAGQ--------------------------SEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTS-TTCCTTCCCTTSCCHHHHHHHHTC--------------------------HHHHHHHHHHC
T ss_pred             HHHHHhc-CCCCCcCcCCCCCCHHHHHHHcCC--------------------------HHHHHHHHhcc
Confidence            9999995 599999999999999999999994                          78999998764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.6e-29  Score=241.07  Aligned_cols=203  Identities=16%  Similarity=0.121  Sum_probs=150.4

Q ss_pred             HHHHhhCCCcccc--cCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCc
Q 037778           22 RGIYDVHEGEIRA--PISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNK   99 (575)
Q Consensus        22 ~~lL~~~~~~~~~--~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~   99 (575)
                      +.+|++ +.+.+.  ..+.++.||||.|+..|+.++|++|++.  |.+++.+|..|.||||+|+..|+.+++++|++.|+
T Consensus         2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   78 (229)
T 2vge_A            2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGA   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            455654 333332  2256678899999999999999999998  88999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhcccccccc-CCCCc
Q 037778          100 AIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRA-ANEET  178 (575)
Q Consensus       100 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d-~~g~t  178 (575)
                      ++ +.+|..|.||||+|+..|+.+++++|++.++                                  +++.++ .+|.|
T Consensus        79 ~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga----------------------------------~~~~~~~~~g~t  123 (229)
T 2vge_A           79 NV-NSPDSHGWTPLHCAASCNDTVICMALVQHGA----------------------------------AIFATTLSDGAT  123 (229)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC----------------------------------CTTCCCSSTTCC
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----------------------------------CcccccCCCCCC
Confidence            86 8889999999999999999999999888755                                  333443 46666


Q ss_pred             HHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHH
Q 037778          179 ALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLIL  258 (575)
Q Consensus       179 pLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~L  258 (575)
                      |||+|+.                                                             +..|+.+++++|
T Consensus       124 pL~~A~a-------------------------------------------------------------~~~~~~~~v~~L  142 (229)
T 2vge_A          124 AFEKCDP-------------------------------------------------------------YREGYADCATYL  142 (229)
T ss_dssp             TGGGCCT-------------------------------------------------------------TSTTHHHHHHHH
T ss_pred             HHHHHHH-------------------------------------------------------------HhcChHHHHHHH
Confidence            6666610                                                             233455666666


Q ss_pred             HHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          259 IREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       259 l~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      +++|++ ++..|..|.|++|.++..+.   .++|++.|++.++  +.+|.+|+||||+|+..|+.++++..
T Consensus       143 l~~ga~-~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~--~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          143 ADVEQS-MGLMNSGAVYALWDYSAEFG---DELSFREGESVTV--LRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             HHHHHH-TTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEE--EESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             HHcCCC-cccccCCchHHHHHHhhccc---cccCccccccccc--cccCCCcccHHHHHHHcCCcceeehh
Confidence            666666 56667777788775544433   3567888888655  66999999999999999998877653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2.2e-27  Score=219.88  Aligned_cols=157  Identities=16%  Similarity=0.154  Sum_probs=131.0

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +..|+||||.|+..|+.++++.|++. +.+++.. |..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence            56788888888888888888888875 6677766 77888888888888888888888888  78888888888888888


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      |+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||+|+|+..++.+++++|
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF  186 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence            88888888888888888886 7788888888888888888888888888887 777788888888888888888888888


Q ss_pred             HHh
Q 037778          161 FED  163 (575)
Q Consensus       161 l~~  163 (575)
                      ++.
T Consensus       187 l~~  189 (192)
T 2rfm_A          187 TEV  189 (192)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=4.6e-27  Score=213.04  Aligned_cols=157  Identities=22%  Similarity=0.225  Sum_probs=147.9

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      ...+.++||.|+..|+.++++.|++ .+.+++.+ |.+|.||||+|+..|+.+++++|+++  +.+++.+|..|.||||+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHH
Confidence            4567899999999999999999998 48888887 89999999999999999999999999  89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      |+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++++ .+..+..|.||+|.|+..++.+++++|
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            99999999999999999997 8899999999999999999999999999998 788899999999999999999999999


Q ss_pred             HHh
Q 037778          161 FED  163 (575)
Q Consensus       161 l~~  163 (575)
                      ++.
T Consensus       166 ~~~  168 (169)
T 2y1l_E          166 QKL  168 (169)
T ss_dssp             HTC
T ss_pred             HHc
Confidence            874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.8e-27  Score=218.29  Aligned_cols=163  Identities=14%  Similarity=0.137  Sum_probs=154.0

Q ss_pred             cccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCC
Q 037778           31 EIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRV  110 (575)
Q Consensus        31 ~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~  110 (575)
                      .++.+ |..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.
T Consensus        27 ~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~  102 (192)
T 2rfm_A           27 LRNYR-DSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGK  102 (192)
T ss_dssp             HHTCC-CTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSC
T ss_pred             HHhCc-CCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCC
Confidence            34555 89999999999999999999999999  8999999999999999999999999999999999996 89999999


Q ss_pred             cHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCC
Q 037778          111 LPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLN  189 (575)
Q Consensus       111 tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~  189 (575)
                      ||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|++.  +.+++.+|..|.||||+|+..++ 
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~-  179 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--GADISARDLTGLTAEASARIFGR-  179 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTC-
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhCc-
Confidence            99999999999999999999999 888999999999999999999999999997  89999999999999999999994 


Q ss_pred             CcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh
Q 037778          190 YSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV  225 (575)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~  225 (575)
                                               .+++++|++.+
T Consensus       180 -------------------------~~~v~~Ll~~~  190 (192)
T 2rfm_A          180 -------------------------QEVIKIFTEVR  190 (192)
T ss_dssp             -------------------------HHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHHhcc
Confidence                                     78999998876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=5.1e-27  Score=209.58  Aligned_cols=154  Identities=21%  Similarity=0.224  Sum_probs=145.8

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      ++.||||.|+..|+.+.++.+++..+.+++.. |..|.||||+ +..|+.+++++|++.  |.+++.+|..|.||||+|+
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH
Confidence            46799999999999999999999755688877 8999999999 999999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFE  162 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  162 (575)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. + .+..+.+|.||||+|+..++.++++.|++
T Consensus        77 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999999996 89999999999999999999999999999 6 78889999999999999999999999987


Q ss_pred             h
Q 037778          163 D  163 (575)
Q Consensus       163 ~  163 (575)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4.7e-27  Score=211.18  Aligned_cols=154  Identities=18%  Similarity=0.220  Sum_probs=146.2

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      ...||||.|+..|+.+.++.+++ .+.+++.+ |..|.||||+|+. |+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH
Confidence            46799999999999999999998 57888887 9999999999999 999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      ..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++  .+..+..|.||||+|+..++.+++++|+
T Consensus        79 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999996 8999999999999999999999999999998  4788999999999999999999999999


Q ss_pred             Hh
Q 037778          162 ED  163 (575)
Q Consensus       162 ~~  163 (575)
                      ++
T Consensus       158 ~~  159 (162)
T 1ihb_A          158 AN  159 (162)
T ss_dssp             HT
T ss_pred             Hh
Confidence            87

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=3.7e-27  Score=215.77  Aligned_cols=168  Identities=14%  Similarity=0.118  Sum_probs=155.1

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      .++.++||.|+..|+.+.++.+++..+.+++.. |..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHH
Confidence            467899999999999999999999878888887 99999999999999999999999999  899999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      +..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||++.|+..++.++++.|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997 8999999999999999999999999999999 8889999999999999999999999999


Q ss_pred             HhhhccccccccCCC
Q 037778          162 EDLHEKSAIGRAANE  176 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g  176 (575)
                      +.  +.+++..+..+
T Consensus       159 ~~--g~~~~~~~~~~  171 (179)
T 3f6q_A          159 KM--GQNLNRIPYKD  171 (179)
T ss_dssp             HT--TCCCSCBCCCC
T ss_pred             Hh--hcCcccCCccc
Confidence            97  77777665543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=1.3e-26  Score=209.47  Aligned_cols=160  Identities=14%  Similarity=0.161  Sum_probs=151.6

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH
Q 037778           39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS  118 (575)
Q Consensus        39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  118 (575)
                      .|.||||.|+..|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            578999999999999999999999  8999999999999999999999999999999999996 8899999999999999


Q ss_pred             cCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhh
Q 037778          119 LGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQY  197 (575)
Q Consensus       119 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~  197 (575)
                      .|+.+++++|++.++ .+..+.+|.||||.|+..++.++++.|++.  +.+++.+|.+|.||||+|+..++         
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~---------  147 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALGY---------  147 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTC---------
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCc---------
Confidence            999999999999998 888899999999999999999999999997  89999999999999999999994         


Q ss_pred             hhhhccchhhhHhhHHHHHHHHHHHHHhhhCC
Q 037778          198 QRGFFSAKDIENKRQKALKLVQRLWEKVVLLS  229 (575)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~  229 (575)
                                       .+++++|++++.+..
T Consensus       148 -----------------~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          148 -----------------RSVQQVIESHLLKLL  162 (167)
T ss_dssp             -----------------HHHHHHHHHHHHHHC
T ss_pred             -----------------HHHHHHHHHHHHHHH
Confidence                             789999999887654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3.3e-27  Score=212.95  Aligned_cols=157  Identities=22%  Similarity=0.246  Sum_probs=147.6

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +.++.|+||.|+..|+.+.++.+++..+.+++.. +..|.||||+|+..|+.+++++|+++  +.+++.+|..|.||||+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHHH
Confidence            5678999999999999999999999777777776 88899999999999999999999999  89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      |+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||+|+|.. ++.+++++|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence            99999999999999999997 8999999999999999999999999999999 88899999999999877 888999999


Q ss_pred             HHh
Q 037778          161 FED  163 (575)
Q Consensus       161 l~~  163 (575)
                      ++.
T Consensus       160 ~~~  162 (165)
T 3twr_A          160 RGD  162 (165)
T ss_dssp             HTC
T ss_pred             hhc
Confidence            876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.3e-28  Score=250.95  Aligned_cols=266  Identities=12%  Similarity=0.035  Sum_probs=175.2

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcc--cccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCC---ccccccCCChH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEI--RAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGD---LAQENNVGYTA   78 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~--~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~---l~~~d~~g~Tp   78 (575)
                      ++.||||.||..|+.++++.|++. +...  ....+..|.||||+|++.|+.++|++|+++  |++   .+..+.+ .||
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~--gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHH-HHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC-CCH
Confidence            457999999999999999999985 4311  111255688999999999999999999999  654   2333333 999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccccc--CCCCCCcHHHHHH-HcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHH
Q 037778           79 LFFAAASGMVELAREIMTHNKAIATE--QDDKRVLPIDLAA-SLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYD  155 (575)
Q Consensus        79 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~  155 (575)
                      ||+|+..|+.++|++|+++|+++ +.  .|..|.||||+|+ ..|+.++|++|++.++      .|.||||.|+..|+.+
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------ccchHHHHHHHCCCHH
Confidence            99999999999999999999986 55  7888999999999 9999999999999654      4899999999999999


Q ss_pred             HHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh------hhhhhccchhhhHhhHHHHHHHHHHHHHhh-hC
Q 037778          156 VALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ------YQRGFFSAKDIENKRQKALKLVQRLWEKVV-LL  228 (575)
Q Consensus       156 ~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~-~~  228 (575)
                      ++++|++.  +...+.++    ++++.|+..|+........      ..+.+....+     ....+.+++|++.+. ..
T Consensus       240 vv~lL~~~--ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~-----~~~~~~~~~Ll~~~~vk~  308 (376)
T 2aja_A          240 VNPFIARH--VNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND-----EVLLDDIRFLLSIPGIKA  308 (376)
T ss_dssp             HHHHHHHH--HHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC-----GGGHHHHHHHHTSTTTGG
T ss_pred             HHHHHHhc--Cccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch-----hhHHHHHHHHHhChhhhh
Confidence            99999987  66665554    3677777776422110000      0011111000     012445566654321 00


Q ss_pred             ChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhc
Q 037778          229 SDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQI  295 (575)
Q Consensus       229 ~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  295 (575)
                      ......+.+.+.+|||+|+..|+.++++.|++.    ...+|..|+|++.+|-.+|+.++.+.-+.+
T Consensus       309 l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          309 LAPTATIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             GSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS----HHHHHSCC----------------------
T ss_pred             hhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC----hHHHHHHHHhccccccccccccHHHHHHHH
Confidence            000000122334999999999999999999975    356888999999999999999998876543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.5e-26  Score=204.49  Aligned_cols=150  Identities=17%  Similarity=0.163  Sum_probs=140.9

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      ..++||.|+..|+.+.++.+++. +.+++  .+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHH
Confidence            56899999999999999999996 55554  388899999999999999999999998  89999999999999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           85 SGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      .|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||+|+|+..++.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999997 8999999999999999999999999999998 788899999999999999999999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.2e-26  Score=208.57  Aligned_cols=159  Identities=18%  Similarity=0.109  Sum_probs=146.4

Q ss_pred             CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHH
Q 037778           38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA  117 (575)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  117 (575)
                      ....||||.|+..|+.+++++|++.  +.+++.+|..|+||||+|+. |+.+++++|++.++++ +.+|..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            4568999999999999999999998  89999999999999999999 9999999999999996 889999999999999


Q ss_pred             HcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh
Q 037778          118 SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ  196 (575)
Q Consensus       118 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~  196 (575)
                      ..|+.+++++|++.++ .+..+.+|.||||+|+..++.+++++|++. ....++.+|..|.||||+|+..++        
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~--------  149 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDTACDLARLYGR--------  149 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTTC--------
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCCCcHHHHHHHcCC--------
Confidence            9999999999999998 788999999999999999999999999998 444468999999999999999994        


Q ss_pred             hhhhhccchhhhHhhHHHHHHHHHHHHHhhh
Q 037778          197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVL  227 (575)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~  227 (575)
                                        .+++++|+++|++
T Consensus       150 ------------------~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          150 ------------------NEVVSLMQANGAG  162 (162)
T ss_dssp             ------------------HHHHHHHHHTC--
T ss_pred             ------------------HHHHHHHHHhCCC
Confidence                              7899999988764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=3.8e-26  Score=206.93  Aligned_cols=147  Identities=20%  Similarity=0.232  Sum_probs=139.7

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      ...+.||||.|++.|+.++|++|++.  +.+++.+|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence            56678999999999999999999999  8999999999999999999999999999999999996 88999999999999


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      +..|+.+++++|++.++ .+..+.+|.||||.|+..++.+++++|+++  +.+++.+|.+|.||||+|+..++
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhCC
Confidence            99999999999999998 788899999999999999999999999998  88999999999999999999994

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=6.8e-27  Score=224.57  Aligned_cols=180  Identities=12%  Similarity=0.070  Sum_probs=131.3

Q ss_pred             CCcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHH
Q 037778            1 PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF   80 (575)
Q Consensus         1 p~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh   80 (575)
                      |...|.||||.|+..|+.+.++.+++ ++.+++.  ++.|.||||.|+..|+.++|++|++.  +.+++.+|..|.||||
T Consensus         1 p~~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~   75 (239)
T 1ycs_B            1 PEITGQVSLPPGKRTNLRKTGSERIA-HGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALH   75 (239)
T ss_dssp             ---------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHH
T ss_pred             CCccccccCchhhhhhhHHHHHHHhc-cCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHH
Confidence            67789999999999999999999988 5888874  57899999999999999999999999  8899999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchh-hHHHHH--HHhCcHHH
Q 037778           81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRS-HLLVTL--IQTDLYDV  156 (575)
Q Consensus        81 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~-t~L~~a--~~~~~~~~  156 (575)
                      +|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|. ||||.|  +..|+.++
T Consensus        76 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~  154 (239)
T 1ycs_B           76 NAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC  154 (239)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHH
Confidence            999999999999999999997 9999999999999999999999999999999 666666665 999999  78899999


Q ss_pred             HHHHHHhhhccccccc---------cCCCCcHHHHHHhcCC
Q 037778          157 ALRVFEDLHEKSAIGR---------AANEETALHALARKNL  188 (575)
Q Consensus       157 ~~~Ll~~~~~~~~~~~---------d~~g~tpLh~a~~~~~  188 (575)
                      ++.|++.  ++..+..         +..+.++++++.+.|.
T Consensus       155 ~~~Ll~~--~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          155 SQFLYGV--QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHH--HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHHh--hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999997  6655544         6678888888888774

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=6.4e-26  Score=207.50  Aligned_cols=166  Identities=17%  Similarity=0.093  Sum_probs=151.8

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      ++++.+|||.|+..|+.+++++|++.. +.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA   79 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            356789999999999999999999986 7789999999999999999999999999999999997 88999999999999


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK  195 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~  195 (575)
                      +..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|++.  +.+++.+|.+|.||||+|+..+        
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~--------  149 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN--GALVSICNKYGEMPVDKAKAPL--------  149 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSSBCCTTSCCGGGGSCHHH--------
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcchhccCCCCcHHHHHHHH--------
Confidence            99999999999999999 888999999999999999999999999997  8999999999999999999877        


Q ss_pred             hhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778          196 QYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~  232 (575)
                                        ..++++.|++.|++++...
T Consensus       150 ------------------~~~~~~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          150 ------------------RELLRERAEKMGQNLNRIP  168 (179)
T ss_dssp             ------------------HHHHHHHHHHTTCCCSCBC
T ss_pred             ------------------HHHHHHHHHHhhcCcccCC
Confidence                              4788999999998887654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=8e-28  Score=229.24  Aligned_cols=177  Identities=21%  Similarity=0.195  Sum_probs=157.3

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      ...+.||||.|+..|+.++++.|++. +.+++.+ |.+|.||||+|+..|+.+++++|++.  |++++.+|..|+||||+
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~tpLh~   93 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLITA--GANVNSPDSHGWTPLHC   93 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence            34678999999999999999999985 7889887 99999999999999999999999999  99999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCC-CCCCcHHHHH--HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQD-DKRVLPIDLA--ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVA  157 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A--~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~  157 (575)
                      |+..|+.+++++|++.|+++ +..+ ..|.||||+|  +..|+.+++++|++.++ .+..+..+.++++.+...+..   
T Consensus        94 A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~---  169 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD---  169 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---
T ss_pred             HHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---
Confidence            99999999999999999997 6664 6999999999  99999999999999999 788888999998865544332   


Q ss_pred             HHHHHhhhccc--cccccCCCCcHHHHHHhcCC
Q 037778          158 LRVFEDLHEKS--AIGRAANEETALHALARKNL  188 (575)
Q Consensus       158 ~~Ll~~~~~~~--~~~~d~~g~tpLh~a~~~~~  188 (575)
                      +.+++.  +..  ++.+|.+|+||||+|+..|+
T Consensus       170 ~~ll~~--ga~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          170 ELSFRE--GESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             BCCBCT--TCEEEEEESSCTTCSSEEEEEETTE
T ss_pred             ccCccc--cccccccccCCCcccHHHHHHHcCC
Confidence            344554  555  67889999999999999985

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=4.5e-26  Score=205.50  Aligned_cols=159  Identities=18%  Similarity=0.192  Sum_probs=146.4

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      |++|.||||.|++.|+.++++.|++.. +.+++..+..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            677899999999999999999999974 7788889999999999999999999999999999996 89999999999999


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK  195 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~  195 (575)
                      +..|+.+++++|++.++ .+..+..|.||||+|+..++.++++.|++.  +.+++.+|.+|.||||+|++ ++       
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~a~~-~~-------  152 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH--GADPTKKNRDGNTPLDLVKD-GD-------  152 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTGGGSCT-TC-------
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCChhHhHhc-CC-------
Confidence            99999999999999999 888999999999999999999999999997  89999999999999999877 52       


Q ss_pred             hhhhhhccchhhhHhhHHHHHHHHHHHHHhh
Q 037778          196 QYQRGFFSAKDIENKRQKALKLVQRLWEKVV  226 (575)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~  226 (575)
                                         .+++++|.+.|+
T Consensus       153 -------------------~~i~~~L~~~gA  164 (165)
T 3twr_A          153 -------------------TDIQDLLRGDAA  164 (165)
T ss_dssp             -------------------HHHHHHHHTC--
T ss_pred             -------------------hHHHHHHhhccc
Confidence                               688888887654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=2.6e-25  Score=197.82  Aligned_cols=143  Identities=17%  Similarity=0.130  Sum_probs=135.7

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL  119 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  119 (575)
                      ..||||.|++.|+.+++++|++.  +.+++ .|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            46899999999999999999999  77776 5889999999999999999999999999996 88999999999999999


Q ss_pred             CChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778          120 GHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       120 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      |+.+++++|++.++ .+..+.+|.||||+|+..++.+++++|++.  +.+++.+|.+|.||||+|+..++
T Consensus        78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCC
Confidence            99999999999998 788899999999999999999999999997  89999999999999999999994

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=3.1e-26  Score=219.93  Aligned_cols=183  Identities=12%  Similarity=0.098  Sum_probs=116.4

Q ss_pred             CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHH
Q 037778           38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA  117 (575)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  117 (575)
                      ..|.||||.|++.|+.+.++.|+++  |.+++. +..|.||||.|+..|+.++++.|++.++++ +.+|..|.||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            4578888888888888888888888  777775 367788888888888888888888888875 778888888888888


Q ss_pred             HcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhh
Q 037778          118 SLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQY  197 (575)
Q Consensus       118 ~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~  197 (575)
                      ..|+.+++++|++.++                                  +++.+|.+|+                    
T Consensus        79 ~~g~~~~v~~Ll~~ga----------------------------------~~~~~d~~g~--------------------  104 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGV----------------------------------NVNAADSDGW--------------------  104 (239)
T ss_dssp             HHTCHHHHHHHHHHTC----------------------------------CTTCCCTTCC--------------------
T ss_pred             HcCCHHHHHHHHHcCC----------------------------------CCCccCCCCC--------------------
Confidence            8888888887777543                                  3444555555                    


Q ss_pred             hhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCC-ch
Q 037778          198 QRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGY-TI  276 (575)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~-t~  276 (575)
                                                                 ||||+|+..|+.+++++|+++|++ ++..|..|. ||
T Consensus       105 -------------------------------------------tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~  140 (239)
T 1ycs_B          105 -------------------------------------------TPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTA  140 (239)
T ss_dssp             -------------------------------------------CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCH
T ss_pred             -------------------------------------------CHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcch
Confidence                                                       455555555678889999999988 677777766 99


Q ss_pred             HHHH--HHcCChhHHHHHHhcCcchhhhh-----hcccCCCCcHHHHHhhCCC
Q 037778          277 FHTA--VLHRRKRIFKLIYQIGAAKDLIL-----KFEDPKKNNILHLAAMLPP  322 (575)
Q Consensus       277 Lh~A--~~~~~~~iv~~Ll~~~~~~~~l~-----~~~d~~G~T~LHlAa~~~~  322 (575)
                      ||+|  +.+|+.+++++|+++|++.+...     ...|..|.|++|++.+.|.
T Consensus       141 l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          141 ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999  78899999999999998876531     1138889999999999886

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=7.1e-25  Score=195.59  Aligned_cols=143  Identities=21%  Similarity=0.144  Sum_probs=135.2

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL  119 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  119 (575)
                      +.||||.|+..|+.++++.|++.. +.+++.+|..|.||||+ +..|+.++++.|++.|+++ +.+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhh-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            579999999999999999999983 77899999999999999 9999999999999999996 89999999999999999


Q ss_pred             CChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778          120 GHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       120 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      |+.+++++|++.++ .+..+.+|.||||.|+..++.+++++|++.   .+++.+|.+|.||||+|+..++
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCc
Confidence            99999999999998 788899999999999999999999999974   6778899999999999999994

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=6.7e-25  Score=201.61  Aligned_cols=155  Identities=12%  Similarity=0.015  Sum_probs=138.9

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCH----HHHHHHHHcCCCCCccccccCCChH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQY----GFVKELVQRMEPGDLAQENNVGYTA   78 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~l~~~d~~g~Tp   78 (575)
                      .+++++||.||+.|+.+.++.++...   ++...+..|+||||+|+..|+.    +++++|+++  |++++.+|.+|+||
T Consensus         4 ~~~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~Tp   78 (186)
T 3t8k_A            4 MSEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTL   78 (186)
T ss_dssp             HHHCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCT
T ss_pred             cccccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcH
Confidence            35789999999999999999998864   3333236799999999999985    599999999  99999999999999


Q ss_pred             HHHHHHcCC------HHHHHHHHhcCccccccCCCCCC-cHHHHHHHcC-----ChHHHHHHHh-ccc-cccCcCchhhH
Q 037778           79 LFFAAASGM------VELAREIMTHNKAIATEQDDKRV-LPIDLAASLG-----HEDMVVYLYG-QTK-NSLNDEDRSHL  144 (575)
Q Consensus        79 Lh~Aa~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g-----~~~~v~~Ll~-~~~-~~~~~~~g~t~  144 (575)
                      ||+|+..|+      .+++++|+++|+++ +.+|..|. ||||+|+..+     +.+++++|++ .++ .+..|..|.||
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp  157 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA  157 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence            999999887      68999999999997 99999999 9999999955     3569999999 888 88999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHh
Q 037778          145 LVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       145 L~~a~~~~~~~~~~~Ll~~  163 (575)
                      ||+|.+.++.++++.|++.
T Consensus       158 L~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          158 LEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=3e-24  Score=186.90  Aligned_cols=124  Identities=18%  Similarity=0.190  Sum_probs=73.9

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccC-CChHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNV-GYTALFF   81 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~-g~TpLh~   81 (575)
                      ..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+. |+.+++++|+++  +.+++.+|.. |+||||+
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~   84 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLTRPVHD   84 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTBCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCCHHHH
Confidence            4555666666666666666655553 5555554 5556666666666 666666666665  5566666655 5666666


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT  132 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  132 (575)
                      |+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|+++|
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            66666666666666666554 555556666666666666666666665554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=7.1e-24  Score=184.55  Aligned_cols=126  Identities=24%  Similarity=0.288  Sum_probs=111.5

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      -..+.||||+|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|++.  +.+++.+|..|+||||+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence            35678999999999999999988884 7888877 88899999999999999999999998  88999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT  132 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  132 (575)
                      |+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999886 888899999999999999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=3.5e-24  Score=191.24  Aligned_cols=138  Identities=18%  Similarity=0.201  Sum_probs=80.4

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCCh-HHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYT-ALFF   81 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~T-pLh~   81 (575)
                      ..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+ .|+.+++++|+++  +.+++.+|..|.| |||+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHH
Confidence            3456666666666666666666653 5566655 666666666663 6666666666666  6666666666666 6666


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLV  146 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~  146 (575)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.|+.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            66666666666666666664 6666666666666666666666666666655 4444455544443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.2e-23  Score=183.21  Aligned_cols=130  Identities=20%  Similarity=0.143  Sum_probs=123.7

Q ss_pred             CCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCC
Q 037778           29 EGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDK  108 (575)
Q Consensus        29 ~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~  108 (575)
                      +.+++.. +..|.||||+|+..|+.+++++|+++  +.+++.+|..|.||||+|+. |+.+++++|+++++++ +.+|..
T Consensus         2 ~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~   76 (136)
T 1d9s_A            2 SPGIHML-GGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPA   76 (136)
T ss_dssp             CCCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTT
T ss_pred             CCCccCC-CCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCC
Confidence            3567776 89999999999999999999999999  89999999999999999999 9999999999999996 889999


Q ss_pred             -CCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          109 -RVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       109 -g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                       |.||||+|+..|+.+++++|++.++ .+..+..|.||||+|+..++.+++++|+++
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence             9999999999999999999999999 888999999999999999999999999987

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=6.9e-24  Score=189.31  Aligned_cols=142  Identities=18%  Similarity=0.101  Sum_probs=118.7

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCc-HHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVL-PIDL  115 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~  115 (575)
                      +..|.||||+|+..|+.++|++|+++  +.+++.+|..|+||||+|+ .|+.+++++|++.|+++ +.+|..|.| |||+
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   84 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence            67899999999999999999999999  8999999999999999985 99999999999999997 899999999 9999


Q ss_pred             HHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHH
Q 037778          116 AASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALA  184 (575)
Q Consensus       116 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~  184 (575)
                      |+..|+.+++++|+++++ .+..+..|.||||+|+..++.+++++|+++  +.+++.++..|.||.+.+.
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA--AGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC--C------------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc--CCCCCccCcCcCcccccCC
Confidence            999999999999999999 888999999999999999999999999997  9999999999999988553

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=7.4e-23  Score=175.04  Aligned_cols=125  Identities=26%  Similarity=0.378  Sum_probs=114.6

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      +|+||||.|+..|+.++++.+++. +.+++.. +..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHH
Confidence            488999999999999999999885 7778876 88999999999999999999999998  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      ..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999999986 8889999999999999999999999998875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=5.5e-23  Score=188.77  Aligned_cols=160  Identities=8%  Similarity=0.021  Sum_probs=139.5

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHHHHHcCCH----HHHHHHHhcCccccccCCCCCCcHHH
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFFAAASGMV----ELAREIMTHNKAIATEQDDKRVLPID  114 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~  114 (575)
                      +.++||.|++.|+.+.++.+++.  +  ++.++ ..|+||||+|+.+|+.    +++++|+++|+++ +.+|..|.||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            46889999999999999999987  3  44555 7899999999999975    5999999999997 999999999999


Q ss_pred             HHHHcCC------hHHHHHHHhccc-cccCcCchh-hHHHHHHHh-----CcHHHHHHHHHhhhccccccccCCCCcHHH
Q 037778          115 LAASLGH------EDMVVYLYGQTK-NSLNDEDRS-HLLVTLIQT-----DLYDVALRVFEDLHEKSAIGRAANEETALH  181 (575)
Q Consensus       115 ~A~~~g~------~~~v~~Ll~~~~-~~~~~~~g~-t~L~~a~~~-----~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh  181 (575)
                      +|+..|+      .+++++|+++|+ .+..|..|. ||||+|+..     +..++++.|++. .+.+++.+|..|.||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~-~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ-SGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS-TTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh-cCCCCcccCCCCCCHHH
Confidence            9999987      578999999999 888999999 999999984     446799999994 49999999999999999


Q ss_pred             HHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChh
Q 037778          182 ALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDS  231 (575)
Q Consensus       182 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~  231 (575)
                      +|++.++                          .+++++|.+...+.+.+
T Consensus       160 ~A~~~~~--------------------------~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          160 FVKRCQK--------------------------PIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             HHHTTTC--------------------------HHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCC--------------------------HHHHHHHHHHHHHHhcc
Confidence            9999984                          67888887776655544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=2.1e-22  Score=175.14  Aligned_cols=124  Identities=22%  Similarity=0.240  Sum_probs=118.3

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      ...+.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            56789999999999999999999999  8999999999999999999999999999999999996 88999999999999


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      +..|+.+++++|++.++ .+..|.+|.||||+|+..++.++++.|++.
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999998 788899999999999999999999999875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.6e-22  Score=185.58  Aligned_cols=139  Identities=18%  Similarity=0.178  Sum_probs=127.3

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFF   81 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~   81 (575)
                      .+|.||||.|+..|+.+.++.+++  +.+++.+ |..|.||||+|+..|+.+++++|+++  +.+++.+| ..|+||||+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHH
Confidence            478899999999999999999998  7788887 99999999999999999999999999  89999998 889999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.                ..+.+++++++..+..++++.|.
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHHHH
Confidence            99999999999999999997 89999999999999875432                34568999999999999999987


Q ss_pred             Hh
Q 037778          162 ED  163 (575)
Q Consensus       162 ~~  163 (575)
                      ++
T Consensus       180 ~~  181 (183)
T 3deo_A          180 GQ  181 (183)
T ss_dssp             TC
T ss_pred             Hh
Confidence            64

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=6.7e-22  Score=169.04  Aligned_cols=122  Identities=24%  Similarity=0.334  Sum_probs=117.7

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH
Q 037778           39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS  118 (575)
Q Consensus        39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  118 (575)
                      +|+||||+|++.|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence            589999999999999999999999  8999999999999999999999999999999999996 8899999999999999


Q ss_pred             cCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          119 LGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       119 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      .|+.+++++|++.++ .+..+..|.||||+|+..++.+++++|+++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            999999999999998 788899999999999999999999999987

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=5.7e-23  Score=178.99  Aligned_cols=126  Identities=15%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +..|+||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|+++  +.+++.+|..|+||||+
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHHHH
Confidence            4567777888777777777777776 46677766 77777788888777777777777777  77777777777788888


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhcc
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQT  132 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  132 (575)
                      |+..|+.+++++|++.|+++ +.+|..|.||||+|+..+..+++++|.+..
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            77777777777777777775 777777777877777777777776665543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.6e-22  Score=193.07  Aligned_cols=139  Identities=18%  Similarity=0.178  Sum_probs=128.7

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFF   81 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~   81 (575)
                      .+|.||||.|+..|+.++++.|++  +.+++.+ |..|.||||+|+..|+.++|++|+++  |++++.+| ..|.||||+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHH
Confidence            468999999999999999999998  7788887 99999999999999999999999999  99999998 889999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           82 AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        82 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|+..++                ...+.+|||+|+..|+.++++.|+
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~----------------~~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK----------------TTPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT----------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh----------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence            99999999999999999997 8999999999999986332                256789999999999999999999


Q ss_pred             Hh
Q 037778          162 ED  163 (575)
Q Consensus       162 ~~  163 (575)
                      +.
T Consensus       181 ~~  182 (244)
T 3ui2_A          181 GQ  182 (244)
T ss_dssp             HH
T ss_pred             Hh
Confidence            86

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=5e-22  Score=169.53  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=87.4

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .|.||||.|+..|+.+.++.+++ .+.+++.+ |..|.||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHH
Confidence            56788888888888888887777 46677776 77788888888888888888888877  7888888888888888888


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS  118 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  118 (575)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|..
T Consensus        82 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCC
T ss_pred             HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCC
Confidence            888888888888888875 7788888888888743

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=8e-23  Score=187.57  Aligned_cols=138  Identities=17%  Similarity=0.131  Sum_probs=90.8

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCcHHHHHH
Q 037778           39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD-DKRVLPIDLAA  117 (575)
Q Consensus        39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~  117 (575)
                      +|.||||+|+..|+.++++.|++   +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence            45666666666666666666665   3566666666666666666666666666666666664 4444 56666666666


Q ss_pred             HcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhh
Q 037778          118 SLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQY  197 (575)
Q Consensus       118 ~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~  197 (575)
                      ..|+.+++++|+++                                  +.+++.+|.+|.||||+|++.++         
T Consensus       119 ~~~~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~tpl~~A~~~~~---------  155 (183)
T 3deo_A          119 GYVRPEVVEALVEL----------------------------------GADIEVEDERGLTALELAREILK---------  155 (183)
T ss_dssp             HTTCHHHHHHHHHH----------------------------------TCCTTCCCTTSCCHHHHHHHHHH---------
T ss_pred             hcCcHHHHHHHHHc----------------------------------CCCCcCCCCCCCCHHHHHHHhcc---------
Confidence            66666666666654                                  55566778888888888876551         


Q ss_pred             hhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHH
Q 037778          198 QRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIRE  261 (575)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~  261 (575)
                                                            .....+||+.|+..|+.++++.|.++
T Consensus       156 --------------------------------------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          156 --------------------------------------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             --------------------------------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             --------------------------------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence                                                  11223788888888888888887654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=2.9e-22  Score=174.44  Aligned_cols=125  Identities=20%  Similarity=0.211  Sum_probs=115.1

Q ss_pred             CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHH
Q 037778           36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL  115 (575)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  115 (575)
                      .|.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   82 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD   82 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence            388999999999999999999999999  8999999999999999999999999999999999996 8899999999999


Q ss_pred             HHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          116 AASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       116 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      |+..|+.+++++|++.++ .+..+.+|.||+|+|+..+..++++.+.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            999999999999999998 888899999999999988887777666554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=194.76  Aligned_cols=141  Identities=13%  Similarity=0.044  Sum_probs=101.5

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccc------cccCCChHHHHHHHc---CCHHHHHHHHhcCccccccCCC
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQ------ENNVGYTALFFAAAS---GMVELAREIMTHNKAIATEQDD  107 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~------~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~  107 (575)
                      ...+.++||.|+..|+.+.++.|++.  +.+++.      +|..|+||||+|+..   |+.+++++|++.|+++ +.+|.
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~  224 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA  224 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCT
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCC
Confidence            34456778888888888888877777  677766      577778888888776   7778888888887775 77777


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhc
Q 037778          108 KRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK  186 (575)
Q Consensus       108 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~  186 (575)
                      .|.||||+|+..|+.+++++|++.++ .+..|.+|.||||+|+..++.+++++|++.  +.+      .|.||||+|+..
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~--ga~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA--QAG------TFAFPLHVDYSW  296 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--HHH------TTSSCCC-----
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh--cCC------CCCChhHHHHhc
Confidence            78888888888888888888888777 667777788888888888888888877776  332      578888888877


Q ss_pred             CC
Q 037778          187 NL  188 (575)
Q Consensus       187 ~~  188 (575)
                      |+
T Consensus       297 g~  298 (301)
T 2b0o_E          297 VI  298 (301)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=9.5e-23  Score=196.18  Aligned_cols=112  Identities=19%  Similarity=0.162  Sum_probs=70.9

Q ss_pred             CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCcHHHHH
Q 037778           38 KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD-DKRVLPIDLA  116 (575)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A  116 (575)
                      .+|.||||+|++.|+.++++.|++   +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            345666666666666666666665   3556666666666666666666666666666666664 4444 5566666666


Q ss_pred             HHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcC
Q 037778          117 ASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKN  187 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~  187 (575)
                      +..|+.+++++|+++                                  +.+++.+|.+|.||||+|+..+
T Consensus       119 ~~~g~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~t~l~~A~~~~  155 (244)
T 3ui2_A          119 AGYVRPEVVEALVEL----------------------------------GADIEVEDERGLTALELAREIL  155 (244)
T ss_dssp             HHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHC----------------------------------CCCCCCCCCCCCcHHHHHHHHH
Confidence            666666666655554                                  5566678888888888887654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=8.3e-22  Score=186.72  Aligned_cols=126  Identities=21%  Similarity=0.220  Sum_probs=85.8

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .|.||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.++|++|++.. +.+++.+|..|+||||+|+
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQP-NIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTST-TCCCCCCCTTSCCHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHh-CCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCC-CCCccccCCCCCCHHHHHH
Confidence            45677777777777777777766 46666665 667777777777777777777777664 5667777777777777777


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++++.|++.++
T Consensus       149 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            777777777777777775 6677777777777777777777777776665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=1.8e-21  Score=166.01  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=103.6

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      +..|+||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            56789999999999999999999998  8999999999999999999999999999999999996 89999999999999


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCc
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDL  153 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~  153 (575)
                      +..|+.+++++|++.++ .+..+.+|.||+|+|...+.
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHH
Confidence            99999999999999988 77788888899888854433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=2.8e-21  Score=183.10  Aligned_cols=135  Identities=17%  Similarity=0.225  Sum_probs=114.3

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCcHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTH-NKAIATEQDDKRVLPIDL  115 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~  115 (575)
                      +.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++. ++++ +.+|..|.||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence            45689999999999999999999998  899999999999999999999999999999999 8886 8999999999999


Q ss_pred             HHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCC
Q 037778          116 AASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANE  176 (575)
Q Consensus       116 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g  176 (575)
                      |+..|+.+++++|++.++ .+..+.+|.||||+|+..+..++++.+++.  +.....++.+|
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~--~~~~~~~~~~~  206 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT--DAVRTLSNAED  206 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc--chhhhccchhh
Confidence            999999999999999999 888999999999999999999999999987  55555554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1.8e-20  Score=185.78  Aligned_cols=141  Identities=16%  Similarity=0.181  Sum_probs=123.2

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCCCccccc-----CCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCCccccccCCC
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAP-----ISKRKDTALHIAAAA---KQYGFVKELVQRMEPGDLAQENNVGY   76 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~-----~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~l~~~d~~g~   76 (575)
                      +.++||.|+..|+.+.++.+++ .+.+++..     .+..|.||||+|+..   |+.+++++|++.  |++++.+|.+|+
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHh-cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCC
Confidence            3467999999999999999997 57787762     388999999999997   899999999999  899999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcH
Q 037778           77 TALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLY  154 (575)
Q Consensus        77 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~  154 (575)
                      ||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.++.     .|.||||+|+..|+.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCCc
Confidence            9999999999999999999999997 99999999999999999999999999998872     578999999987753

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=5e-20  Score=148.61  Aligned_cols=92  Identities=27%  Similarity=0.405  Sum_probs=67.9

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHH
Q 037778           39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAAS  118 (575)
Q Consensus        39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  118 (575)
                      +|+||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            367777777777777777777777  6777777777777777777777777777777777775 6777777777777777


Q ss_pred             cCChHHHHHHHhccc
Q 037778          119 LGHEDMVVYLYGQTK  133 (575)
Q Consensus       119 ~g~~~~v~~Ll~~~~  133 (575)
                      .|+.+++++|++.|+
T Consensus        78 ~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence            777777777777654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=5.7e-20  Score=186.41  Aligned_cols=123  Identities=20%  Similarity=0.208  Sum_probs=72.8

Q ss_pred             chHHHHHHHc-CCHHHHHHHHhhCCCcccccCC--CCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHH
Q 037778            6 RLKLYRAALT-GDWAVARGIYDVHEGEIRAPIS--KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFA   82 (575)
Q Consensus         6 ~t~L~~Aa~~-g~~~~v~~lL~~~~~~~~~~~~--~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~A   82 (575)
                      .|+||.|+.. |+.+.++.|++ .+.+++.. +  ..|.||||+|+..|+.++|++|+++  |++++.+|..|+||||+|
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALA-HGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHH-TTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHH-cCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHH
Confidence            3456666666 66666665555 35555554 3  5556666666666666666666665  566666666666666666


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      +..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+.
T Consensus       276 ~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            6666666666666666554 5556666666666666666666666655543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=1e-19  Score=178.26  Aligned_cols=124  Identities=23%  Similarity=0.265  Sum_probs=100.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCccccc-----CCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCCccccccCCCh
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAP-----ISKRKDTALHIAAAA---KQYGFVKELVQRMEPGDLAQENNVGYT   77 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~-----~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~l~~~d~~g~T   77 (575)
                      .++|+.|+..|+.+.++.+++. +.+++..     .+..|.||||+|+..   |+.+++++|+++  |++++.+|..|+|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g~T  207 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCC
T ss_pred             hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCCCC
Confidence            4578888888888888887774 5553322     167788888888888   788888888888  7888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           78 ALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        78 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      |||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            888888888888888888888886 8888888888888888888888888888776

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=2.4e-19  Score=144.58  Aligned_cols=93  Identities=26%  Similarity=0.352  Sum_probs=87.2

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      +|+||||.|+..|+.++++.|++ .+.+++.+ |.+|.||||+|+..|+.+++++|+++  |++++.+|.+|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence            48999999999999999999988 58899988 99999999999999999999999999  9999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcc
Q 037778           84 ASGMVELAREIMTHNKA  100 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~  100 (575)
                      ..|+.+++++|+++|++
T Consensus        77 ~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            99999999999999864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=6e-19  Score=172.75  Aligned_cols=191  Identities=17%  Similarity=0.123  Sum_probs=142.3

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHH
Q 037778           71 ENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTL  148 (575)
Q Consensus        71 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a  148 (575)
                      .|..+.++++.+...|+..+.+++...-+.....+-..+....    .+...-..+++.....  .........++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            4677889999999999988777765443321010111111111    1111112223333322  223344556789999


Q ss_pred             HHhCcHHHHHHHHHhhhccc------cccccCCCCcHHHHHHhc---CCCCcccchhhhhhhccchhhhHhhHHHHHHHH
Q 037778          149 IQTDLYDVALRVFEDLHEKS------AIGRAANEETALHALARK---NLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQ  219 (575)
Q Consensus       149 ~~~~~~~~~~~Ll~~~~~~~------~~~~d~~g~tpLh~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~  219 (575)
                      +..++.+.++.+++.  +.+      ++..|..|.||||+|+..   +                          ..++++
T Consensus       138 ~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~--------------------------~~~~v~  189 (278)
T 1dcq_A          138 VKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRT--------------------------SLHIVD  189 (278)
T ss_dssp             HHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTT--------------------------THHHHH
T ss_pred             hhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccc--------------------------hHHHHH
Confidence            999999999999887  554      445588999999999998   5                          388999


Q ss_pred             HHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcc
Q 037778          220 RLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA  298 (575)
Q Consensus       220 ~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  298 (575)
                      +|++.|++++..+    ..|.||||+|+..|+.++++.|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus       190 ~Ll~~ga~in~~d----~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          190 FLVQNSGNLDKQT----GKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHCSCTTCCC----TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHCCCCccccC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999998776    3456999999999999999999999999 899999999999999999999999999998863

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=9.1e-19  Score=177.57  Aligned_cols=146  Identities=16%  Similarity=0.143  Sum_probs=118.0

Q ss_pred             CCCChHHhHHHHc-CCHHHHHHHHHcCCCCCccccc--cCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHH
Q 037778           38 KRKDTALHIAAAA-KQYGFVKELVQRMEPGDLAQEN--NVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPID  114 (575)
Q Consensus        38 ~~g~TpLh~Aa~~-g~~~~v~~Ll~~~~~~~l~~~d--~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  114 (575)
                      ..+.|+||.|+.. |+.++++.|++.  |.+++..|  ..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh  273 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH  273 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            3457899999999 999999999999  89999998  89999999999999999999999999997 899999999999


Q ss_pred             HHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhc--cccccccCCCCcHHHHHHhcC
Q 037778          115 LAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHE--KSAIGRAANEETALHALARKN  187 (575)
Q Consensus       115 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~--~~~~~~d~~g~tpLh~a~~~~  187 (575)
                      +|+..|+.+++++|+++++ .+..|.+|.||||+|+..++.+++++|++. ..  ......+..+.|+++.+....
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~-~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA-KMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HC-----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCcccccccCCCCCCHHHHHHHHH
Confidence            9999999999999999999 888999999999999999999999999987 32  222345567788888776543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=4.7e-19  Score=148.98  Aligned_cols=105  Identities=26%  Similarity=0.331  Sum_probs=59.2

Q ss_pred             CCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           37 SKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      |.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA   82 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            45555566666665666666655555  5555555555556666665555556666655555554 55555555666666


Q ss_pred             HHcCChHHHHHHHhccc-cccCcCchhhH
Q 037778          117 ASLGHEDMVVYLYGQTK-NSLNDEDRSHL  144 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~  144 (575)
                      +..|+.+++++|+++++ .+..+..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            55555566666555555 44444444443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=4.6e-19  Score=149.01  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=97.3

Q ss_pred             CCcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHH
Q 037778            1 PIRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF   80 (575)
Q Consensus         1 p~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh   80 (575)
                      ++++|.||||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|+++  +.+++.+|..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHH
Confidence            36789999999999999999999888 47888887 89999999999999999999999998  8999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCcHH
Q 037778           81 FAAASGMVELAREIMTHNKAIATEQDDKRVLPI  113 (575)
Q Consensus        81 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  113 (575)
                      +|+..|+.+++++|+++|+++ +.++..|.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence            999999999999999999997 88888888873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.5e-17  Score=137.23  Aligned_cols=90  Identities=26%  Similarity=0.307  Sum_probs=83.9

Q ss_pred             CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHH
Q 037778           36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL  115 (575)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  115 (575)
                      .|.+|.||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~   96 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDI   96 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHH
Confidence            478899999999999999999999998  8999999999999999999999999999999999996 8899999999999


Q ss_pred             HHHcCChHHHHHH
Q 037778          116 AASLGHEDMVVYL  128 (575)
Q Consensus       116 A~~~g~~~~v~~L  128 (575)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999986

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=2.4e-16  Score=131.20  Aligned_cols=89  Identities=26%  Similarity=0.280  Sum_probs=83.8

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHH
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFF   81 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~   81 (575)
                      +.+|.|+||.|+..|+.++++.|++ .+.+++.+ |..|.||||+|+..|+.+++++|+++  |++++.+|..|.||||+
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHHHH
Confidence            4578999999999999999999998 58899987 89999999999999999999999999  89999999999999999


Q ss_pred             HHHcCCHHHHHHH
Q 037778           82 AAASGMVELAREI   94 (575)
Q Consensus        82 Aa~~g~~~iv~~L   94 (575)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	575
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.004
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-04

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 6e-13
 Identities = 41/266 (15%), Positives = 76/266 (28%), Gaps = 19/266 (7%)

Query: 36  ISKRKDTALHIAAAAKQYGFVKELVQRM-EPGDLAQENNVGYTALFFAAASGMVELAREI 94
           +++  DTALH+A   +   F+  L+        L  +N++G TAL  AA  G      ++
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 95  MTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLY 154
                 +   +       + LA  +        L     +   D   ++L      T   
Sbjct: 65  YAAGAGVLVAERGGHT-ALHLACRVRAHTCACVLLQPRPSHPRDASDTYL------TQSQ 117

Query: 155 DVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKA 214
           D             +     NEE       R  L   ++                  +  
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 215 LKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGY 274
                 L +       + +            A        L +L++   D        G 
Sbjct: 178 RDAGADLNKPEPTCGRTPL----------HLAVEAQAASVLELLLKAGAD-PTARMYGGR 226

Query: 275 TIFHTAVLHRRKRIFKLIYQIGAAKD 300
           T   +A+L     + +L+   GA + 
Sbjct: 227 TPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 269 IDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAM 319
           + E+G T  H AV+H+ +     +    A  + +   ++      LHLAA+
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-DLQNDLGQTALHLAAI 54

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 8e-10
 Identities = 58/350 (16%), Positives = 110/350 (31%), Gaps = 53/350 (15%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRM----- 63
           L+ AA  G   VA+ +   ++ ++ A  +K   T LH AA       VK L++       
Sbjct: 37  LHMAARAGHTEVAKYLLQ-NKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNL 94

Query: 64  --------------------------EPGDLAQENNVGYTALFFAAASGMVELAREIMTH 97
                                     +    A     G+T L  AA  G V +A  ++  
Sbjct: 95  ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 154

Query: 98  NKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDEDRS--HLLVTLIQTDL 153
           + A         + P+ +A    + D+V  L   G + +S      +  H+     Q ++
Sbjct: 155 D-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 213

Query: 154 YDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQK 213
               L+     + +S  G      T LH  A++           ++   +  +       
Sbjct: 214 ARSLLQYGGSANAESVQGV-----TPLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLT 266

Query: 214 ALKLVQRLW----EKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNI 269
            L LV +        V++     +             A       L+  + ++   +   
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 270 DENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAM 319
            + GY+  H A       I  L+ + GA+ +             L +A  
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE----VSSDGTTPLAIAKR 372

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 9e-09
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
           T LH+A+       VK L+QR         N    T L  AA +G  E+A+ ++ + KA 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAK 58

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKN 134
              +      P+  AA +GH +MV  L     N
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-08
 Identities = 51/298 (17%), Positives = 93/298 (31%), Gaps = 16/298 (5%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL 68
           L+ A+  G   + + +            + + +T LH+AA A      K L+Q      +
Sbjct: 4   LHVASFMGHLPIVKNLLQ-RGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQN--KAKV 59

Query: 69  AQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
             +     T L  AA  G   + + ++ +N                 A     E ++  L
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 129 YGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEE--TALHALARK 186
             +   +   +     L    +     VA    E L E+ A   AA +   T LH     
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVA----ELLLERDAHPNAAGKNGLTPLHVAVHH 175

Query: 187 NLNYSHFTKQYQRGF-FSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE---L 242
           N N         RG    +          +   Q   E    L     S      +    
Sbjct: 176 N-NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 234

Query: 243 IFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD 300
           +  AA++G+ E ++ L+          +++G T  H         +  ++ + G   D
Sbjct: 235 LHLAAQEGHAE-MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 6e-06
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
           T LH+A+       VK L+Q     +      +GY+ L  AA  G  ++   ++ +  A 
Sbjct: 299 TPLHVASHYGNIKLVKFLLQHQADVNAK--TKLGYSPLHQAAQQGHTDIVTLLLKNG-AS 355

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
             E       P+ +A  LG+  +   L
Sbjct: 356 PNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 56/297 (18%), Positives = 99/297 (33%), Gaps = 41/297 (13%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL 68
           L+ AA  G   VA  + +  +    A   K   T LH+A        VK L+ R   G  
Sbjct: 136 LHVAAKYGKVRVAELLLE-RDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPR--GGSP 191

Query: 69  AQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
                 GYT L  AA    VE+AR ++ +  +    +  + V P+ LAA  GH +MV   
Sbjct: 192 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVAL- 249

Query: 129 YGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAI--GRAANEETALHALARK 186
               + + N  ++S   +T +     +  + V + L +   +         T LH  +  
Sbjct: 250 LLSKQANGNLGNKSG--LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 307

Query: 187 NLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDA 246
                       +   +AK         L                              A
Sbjct: 308 GNIKLVKFLLQHQADVNAKT--KLGYSPLHQ----------------------------A 337

Query: 247 ARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLIL 303
           A+QG+ + + +L++        +  +G T    A       +  ++  +      +L
Sbjct: 338 AQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 393

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 3e-08
 Identities = 49/285 (17%), Positives = 90/285 (31%), Gaps = 28/285 (9%)

Query: 41  DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           +  L  A   +    V++L++     +  QE   G+T L  A      ++  E++  + A
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIV-ELLLRHGA 63

Query: 101 IATEQDDKRVLPIDLAASLG--HEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDV-- 156
               +      P  LAA  G      +    G   N  +    +  +   +   +  +  
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 157 -----ALRVFEDLHEKSAIGRAANEETALHALARKN--------LNYSHFTKQYQRGFFS 203
                A        ++          TAL   A K         L+              
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 204 AKDIENKRQKALKLVQRLWEKVVLLS---DSRISNLIAEPELIFDAARQGNLEFLLILIR 260
              I          V+ +     LL    D  +     +  LI  A  + +L  +  L+ 
Sbjct: 184 NALIHALLSSDDSDVEAITHL--LLDHGADVNVRGERGKTPLIL-AVEKKHLGLVQRLLE 240

Query: 261 EYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGA---AKDLI 302
           +    I + D +G T    AV  + K+I +L+ + GA     DL+
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 1/121 (0%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG-D 67
           L  AA  G   V + + D    ++ A  +  ++  +H   ++            ++ G D
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 68  LAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVY 127
           +      G T L  A     + L + ++        + D      + LA  L  + +   
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 128 L 128
           L
Sbjct: 272 L 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 24/251 (9%)

Query: 69  AQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL 128
           A E+N     L  A  +  V+L ++++     +  ++++    P+  A  +  ED+V  L
Sbjct: 2   AVEDN---HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 129 YGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL 188
                + +  +        L         L++F                TA    A    
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGK 117

Query: 189 NYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAAR 248
             +      +    + +    + Q+ L+                          + DAA 
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGAT--------------------ALMDAAE 157

Query: 249 QGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDP 308
           +G++E L IL+ E    +   D  G      A+L       + I  +       +     
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217

Query: 309 KKNNILHLAAM 319
           +    L LA  
Sbjct: 218 RGKTPLILAVE 228

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 38  KRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTH 97
           +R  T L +A   K  G V+ L+++ E  ++   ++ G TAL  A    + ++A  +   
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 6e-07
 Identities = 33/281 (11%), Positives = 70/281 (24%), Gaps = 21/281 (7%)

Query: 25  YDVHEGEIRAPISKR---KDTALHIAAAAKQYGFVKELVQRMEPG-DLAQENNVGYTALF 80
           Y+ +  ++ +   K+    +    +AA       +  L   +     +       Y A  
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 131

Query: 81  FAAASGMVELAREIMTHN-KAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDE 139
            AA +G + +   +       I      +      LAA  GH  ++  L           
Sbjct: 132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 191

Query: 140 DRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQR 199
            ++          +      V   L +            A            +      R
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDC-----PVMLAYAEIHEFEYG--EKYVNPFIAR 244

Query: 200 GFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILI 259
                K++      A KL        ++     +        LI     +  L+ +  L+
Sbjct: 245 HVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIR-RNDEVLLDDIRFLL 299

Query: 260 REYPDL----IWNIDENGYTIFHTAVLHRRKRIFKLIYQIG 296
                        I  +   +   A+    +    L+  I 
Sbjct: 300 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.7 bits (107), Expect = 9e-06
 Identities = 38/265 (14%), Positives = 84/265 (31%), Gaps = 22/265 (8%)

Query: 9   LYRAALTGDWAVARGI-YDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGD 67
            + AA+TG  +    +   +   EI   I      A  +AA       +  L +      
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 153

Query: 68  LAQENNVGYTALFFAAASGMVELAREIMTH--NKAIATEQDDKRVLPIDLAASLGHEDMV 125
           +A      Y A   AA +G + +   +      +A A  Q +        A   GH +++
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 213

Query: 126 VYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEE--TALHAL 183
            +L                    +            + ++   A      +E   A    
Sbjct: 214 NFLLDCPVM--------------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLS 259

Query: 184 ARKNLNYSHFTKQYQRGFFSAKDIENKRQKA-LKLVQRLWEKVVLLSDSRISNLIAEPE- 241
               +       +  +GF+  +++  +  +  L  ++ L     + + +  + +  +   
Sbjct: 260 NPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE 319

Query: 242 LIFDAARQGNLEFLLILIREYPDLI 266
           L+  A R GN     +L+   P ++
Sbjct: 320 LLRLALRLGNQGACALLL-SIPSVL 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 36/317 (11%), Positives = 71/317 (22%), Gaps = 39/317 (12%)

Query: 39  RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHN 98
             D  L +          +  +   E   L   +      +F      M ++ + +  + 
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANEL-SLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYY 69

Query: 99  ----------KAIATEQDDKRVLPIDLAASLGHEDMVVYL-----YGQTKNSLNDEDRSH 143
                      + A ++  K  +   +AA  G    +  L       +    +  E+   
Sbjct: 70  AHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA 129

Query: 144 LLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARK----------NLNYSHF 193
             +      L  V  R+ E    +      A    A    A             L  +  
Sbjct: 130 FRLAAENGHL-HVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188

Query: 194 TKQYQRGFFSAKDIENKRQKALKLVQRLWEK-----VVLLSDSRISNLIAEPELIFDAAR 248
           T   Q   + A       +    ++  L +         + +         P +     R
Sbjct: 189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 248

Query: 249 QGNLEFLLILIREYPDL------IWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLI 302
              +     L                                     + +  I   K L 
Sbjct: 249 LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 308

Query: 303 LKFEDPKKNN-ILHLAA 318
                P   N +L LA 
Sbjct: 309 PTATIPGDANELLRLAL 325

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 46/293 (15%), Positives = 85/293 (29%), Gaps = 27/293 (9%)

Query: 41  DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           ++ + +   A     + E + R        +     T L + A++   E + +++ H   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYLYGQT---KNSLNDEDRSHLLVTLIQTDLYDVA 157
                       I   A +   D        T      L    R    +     D     
Sbjct: 59  ----------ECIAAGADVNAMDC----DENTPLMLAVLARRRRLVAYLMKAGADPTIYN 104

Query: 158 LRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKL 217
                 LH+ +A          L++   K                 A +    +  + KL
Sbjct: 105 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 164

Query: 218 VQRLWEKVVLLSDSRISNLIAEPE-LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI 276
           +     KV     +R  +   +    +  AA+  N+  +  L+ E        DE+G T 
Sbjct: 165 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 224

Query: 277 FHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV 329
              A    R  +   + Q GA+ +      D   +    LA      +  NIV
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQA---NNHHNIV 270

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 42  TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI 101
           TALH AA       VK  +   +  +  +++  G T +  AA  G +E+   ++    A 
Sbjct: 189 TALHYAAQVSNMPIVKY-LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-AS 246

Query: 102 ATEQDDKRVLPIDLAASLGHEDMVVYL 128
               D        LA +  H ++V   
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 25  YDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA 84
               +G  +    +   T + +AA   +   V  L+Q+     +   +   +TA   A A
Sbjct: 206 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG--ASVEAVDATDHTARQLAQA 263

Query: 85  SGMVELAR 92
           +    +  
Sbjct: 264 NNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 41/296 (13%), Positives = 80/296 (27%), Gaps = 36/296 (12%)

Query: 7   LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPG 66
           +KL+  A  G +A+   I    E  +     +   T LH  A+       ++L+      
Sbjct: 4   IKLHTEA-AGSYAITEPI--TRES-VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 67  DLAQ------ENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLG 120
            +A        +    T L  A  +    L   +M                         
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP------------------T 101

Query: 121 HEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETAL 180
             +           +  D      ++   +       L              A NE    
Sbjct: 102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV---AHNEGRDQ 158

Query: 181 HALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEP 240
            A A+  +               ++  + +              V  L   + SN   + 
Sbjct: 159 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 218

Query: 241 E----LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLI 292
           E     I  AA++G +E ++ LI++    +  +D   +T    A  +    I  + 
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIF 273

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 43/255 (16%), Positives = 80/255 (31%), Gaps = 36/255 (14%)

Query: 41  DTALHIAAAAKQYGFVKELVQRMEPG--DLAQENNVGYTALFFAAASGMVELAREIMTHN 98
           DT LHIA        V  LV   + G  +L   NN+  T L  A  + +  + R ++T  
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 99  KAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVAL 158
            +        +              +   L      +L+ E R++  +T +   +     
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 159 RVFEDLHEKSAIGRAANEETALHAL--ARKNLNYSHFTKQYQRGFFSAKDIENKRQKALK 216
              + L E+ A   A + ++    L  A +N + S      Q G      + +       
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA--- 180

Query: 217 LVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNI-DENGYT 275
                                     +  A+ +G L  +  L+R   D   ++ + +  T
Sbjct: 181 --------------------------LHSASGRGLLPLVRTLVRSGADS--SLKNCHNDT 212

Query: 276 IFHTAVLHRRKRIFK 290
               A   R   I +
Sbjct: 213 PLMVARSRRVIDILR 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 41 DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTH 97
          +  LH A    ++  V+EL+   +P  L Q++  G   L ++ +    E+   +++ 
Sbjct: 1  NYPLHQACMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIG 296
           A  +     +  L+   P L+   D++G    H +V  +   I   +    
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 7/55 (12%), Positives = 21/55 (38%)

Query: 77  TALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQ 131
             L  A         +E++    ++  ++D    +P+  + S    ++  +L  +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 4/124 (3%)

Query: 9   LYRAALTGDWAVARGIY----DVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRME 64
           L  A  T D       Y    D+ E    A   +  +TALH+A  +     +  +   ++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 65  PGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDM 124
                 +     +               +++   KA     ++    P+D+A  L HE  
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129

Query: 125 VVYL 128
              L
Sbjct: 130 EELL 133

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 22/240 (9%)

Query: 82  AAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYL--YGQTKNSLNDE 139
           +  S + E+          +    D+    P+    S+ + ++V +L  +G  +   ++ 
Sbjct: 80  SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM 139

Query: 140 DRSHLLVTLIQTDLYDV-ALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQ 198
             S L+  +   + YD        D      I   +   T LH +   +           
Sbjct: 140 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA-- 197

Query: 199 RGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLIL 258
                        +  L ++     K         +N         +  R+ ++   L L
Sbjct: 198 -------------KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244

Query: 259 IREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA 318
                +++   D NG T  + A       I   +   GA   +     +      +   A
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI----ANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 24/197 (12%), Positives = 52/197 (26%), Gaps = 20/197 (10%)

Query: 9   LYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDL 68
               +           +   +  +  P+ +  +T LH   +      VK LV+     + 
Sbjct: 76  QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNR 133

Query: 69  AQENNVGYTALFFAAASGMVELAREIMTHNKAIAT---EQDDKRVLPIDLAASLGHEDMV 125
              +N+G + L  A  S     +         +      +D      +            
Sbjct: 134 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC 193

Query: 126 VYL----------YGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAAN 175
                        +   K +   +  ++   +       +    + E+L  K  I    N
Sbjct: 194 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 253

Query: 176 E-----ETALHALARKN 187
                 +T L+  AR  
Sbjct: 254 AQDSNGDTCLNIAARLG 270

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 17/117 (14%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 9   LYRAALTGDWAVARGIYDV-------HEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQ 61
           +  + +TG  A A+   D+        +       +  K++  +     ++   ++ L  
Sbjct: 185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244

Query: 62  RMEPGDLA-QENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA 117
           +    ++   +++ G T L  AA  G + +   ++ +  A     +   + P+D  A
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA 300

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 35/242 (14%), Positives = 69/242 (28%), Gaps = 10/242 (4%)

Query: 77  TALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSL 136
                A +SG  E    ++    A     +   +  +  A    + DMV +L     N  
Sbjct: 42  AVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 137 NDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ 196
             ++   + +    +  Y                  +  +     A              
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLL 256
            Q     A   E +R       Q L    +       S   A    +  AA +G  E L 
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA----LHVAAAKGYTEVLK 216

Query: 257 ILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHL 316
           +LI+   D +   D +G+T  H A    ++   +++ +     + +    +        +
Sbjct: 217 LLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV----NKVGQTAFDV 271

Query: 317 AA 318
           A 
Sbjct: 272 AD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 45/296 (15%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 29  EGEIRAPISKRK--------DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF 80
           E ++  P+ KRK              A ++     V  L++R    D+   N  G TAL 
Sbjct: 21  ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALH 78

Query: 81  FAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDED 140
            A     V++ + ++ +   I    ++  +     A+    +     +         + +
Sbjct: 79  QACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138

Query: 141 RSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRG 200
               L    +  + ++  +   +            EE  +   AR+ LN  H        
Sbjct: 139 GDTPLDIAEEEAMEELL-QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197

Query: 201 FFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIR 260
                      +   ++++ L +    ++             +  AA  G  E   IL+ 
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP----LHAAAHWGKEEACRILVE 253

Query: 261 EYPDLIWNI-DENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILH 315
              D+     ++ G T F  A     + I   + ++             KK N+LH
Sbjct: 254 NLCDM--EAVNKVGQTAFDVAD----EDILGYLEELQ------------KKQNLLH 291

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 233 ISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLH 283
           +SNL     ++ + A  G LE L   I     L    D++  T  H A   
Sbjct: 2   VSNL-----MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSA 47

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 35/228 (15%), Positives = 75/228 (32%), Gaps = 19/228 (8%)

Query: 41  DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKA 100
           +  +   A + +   +KE +   +     + +    TAL +A ++G  E+   ++     
Sbjct: 4   NLMVCNLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 62

Query: 101 IATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRV 160
           +  + D         A++   E +   L    + +  +++    L      + +++A   
Sbjct: 63  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA--- 119

Query: 161 FEDLHEKSAIGRAANEE--TALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLV 218
              L E  A   A +    TA+H  A K          Y +   + +D E      L   
Sbjct: 120 -VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 178

Query: 219 QRLWEKVVLLSDSRISNLIAEPELI-------FDAARQGNLEFLLILI 259
           +   E+  LL         A   +           A+ G    L  ++
Sbjct: 179 EERVEEAKLLVSQG-----ASIYIENKEEKTPLQVAKGGLGLILKRMV 221

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 41 DTALHIAAAAKQYGFVKELVQRM--EPGDLAQENNVGYTALFFA 82
          D+ LH+A   ++     E+++++  +   L  +NN+  T L  A
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	575
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-43  Score=361.22  Aligned_cols=333  Identities=19%  Similarity=0.180  Sum_probs=280.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHc
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS   85 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~   85 (575)
                      .||||.||..|+.++|+.|++ .|++++.. |.+|+||||+|+..|+.++|++|+++  |++++.+|.+|.||||+|+..
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~-~g~~in~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~--gadi~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQ-RGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH-TTCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHc
Confidence            389999999999999999998 48899987 99999999999999999999999999  899999999999999999999


Q ss_pred             CCHHHHHHHHhcCccc--------------------------------cccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           86 GMVELAREIMTHNKAI--------------------------------ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        86 g~~~iv~~Ll~~~~~~--------------------------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      |+.++++.|++.+++.                                ....+..+.++++.|+..++.+++++|++.+.
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999765532                                13457789999999999999999999999998


Q ss_pred             -cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch-hhhhhh--ccchhhhH
Q 037778          134 -NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK-QYQRGF--FSAKDIEN  209 (575)
Q Consensus       134 -~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~-~~~~~~--~~~~~~~~  209 (575)
                       .+..+.+|.+|||.|+..++.++++.|+++  +.+++..+.+|.||+|.+...........+ ......  ......+.
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~  234 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP  234 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG--TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcCCCcCchHHHHHHHcCCHHHHHHHHhc--CCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCH
Confidence             788899999999999999999999999997  888899999999999999987641100000 000000  00011122


Q ss_pred             hhHH----HHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCC
Q 037778          210 KRQK----ALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRR  285 (575)
Q Consensus       210 ~~~~----~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~  285 (575)
                      .+.+    ..++++.+.+.+...+..+    ..+.||++.|++.++.+++++|+++|++ ++..+..+.||||.|+..++
T Consensus       235 l~~a~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~  309 (408)
T d1n11a_         235 LHLAAQEGHAEMVALLLSKQANGNLGN----KSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGN  309 (408)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCC----TTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSC
T ss_pred             HHHHHHhCcHhHhhhhhcccccccccc----CCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCc
Confidence            2222    2567777777776666544    3455999999999999999999999999 78899999999999999999


Q ss_pred             hhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCCh
Q 037778          286 KRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSP  365 (575)
Q Consensus       286 ~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tp  365 (575)
                      .++++++++.|++++    .+|.+|+||||+|++.|+.+++++|                   +..|++++.+|++|+||
T Consensus       310 ~~~~~~ll~~g~~in----~~d~~G~T~Lh~A~~~g~~~iv~~L-------------------l~~GAd~n~~d~~G~t~  366 (408)
T d1n11a_         310 IKLVKFLLQHQADVN----AKTKLGYSPLHQAAQQGHTDIVTLL-------------------LKNGASPNEVSSDGTTP  366 (408)
T ss_dssp             SHHHHHHHHTTCCTT----CCCTTSCCHHHHHHHTTCHHHHHHH-------------------HHTTCCSCCCCSSSCCH
T ss_pred             ceeeeeecccccccc----ccCCCCCCHHHHHHHcCCHHHHHHH-------------------HHCCCCCCCCCCCCCCH
Confidence            999999999999875    4999999999999999998877666                   55899999999999999


Q ss_pred             hHHHHHh
Q 037778          366 RALFTRK  372 (575)
Q Consensus       366 l~~a~~~  372 (575)
                      +++|.+.
T Consensus       367 L~~A~~~  373 (408)
T d1n11a_         367 LAIAKRL  373 (408)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-39  Score=330.27  Aligned_cols=308  Identities=19%  Similarity=0.197  Sum_probs=260.0

Q ss_pred             CcccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCC-----------------
Q 037778            2 IRRRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRME-----------------   64 (575)
Q Consensus         2 ~~~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~-----------------   64 (575)
                      +..|+||||+|+..|+.++++.||+. |++++.+ +.+|.||||+|+..|+.+++++|++...                 
T Consensus        30 d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  107 (408)
T d1n11a_          30 NVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA  107 (408)
T ss_dssp             SSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhh
Confidence            46799999999999999999999985 8899988 9999999999999999999999997631                 


Q ss_pred             --------------CCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHh
Q 037778           65 --------------PGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYG  130 (575)
Q Consensus        65 --------------~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  130 (575)
                                    +...+.+|.+|.++++.|+..++.++++.|++.+.++ +..+.+|.+|||+|+..|+.+++++|++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~~~~~L~~A~~~~~~~~~~~Ll~  186 (408)
T d1n11a_         108 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP  186 (408)
T ss_dssp             HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred             hhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCcCchHHHHHHHcCCHHHHHHHHh
Confidence                          1234556788999999999999999999999999986 8889999999999999999999999999


Q ss_pred             ccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhc-------
Q 037778          131 QTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFF-------  202 (575)
Q Consensus       131 ~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~-------  202 (575)
                      +++ .+..+..|.||+|.+......+....++..  .......+.+|.||||+|+..+...      .++...       
T Consensus       187 ~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~t~l~~a~~~~~~~------~~~~~~~~~~~~~  258 (408)
T d1n11a_         187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY--GGSANAESVQGVTPLHLAAQEGHAE------MVALLLSKQANGN  258 (408)
T ss_dssp             GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHH------HHHHHHTTTCCTT
T ss_pred             cCCcccccCCCCCCcchhhhccchhhhhhhhhhc--cccccccCCCCCCHHHHHHHhCcHh------Hhhhhhccccccc
Confidence            988 777888899999999999998888888876  6666677888889999988877411      111000       


Q ss_pred             --cchhhhHhhH----HHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCch
Q 037778          203 --SAKDIENKRQ----KALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI  276 (575)
Q Consensus       203 --~~~~~~~~~~----~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~  276 (575)
                        +....+..+.    ...+++++|++.|++++...    ..+.||||.|+..++.++++.+++.|.+ ++.+|.+|+||
T Consensus       259 ~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~----~~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~d~~G~T~  333 (408)
T d1n11a_         259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT----RMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSP  333 (408)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC----SSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             cccCCCCChhhhhhhcCcHHHHHHHHHCCCcccccc----ccccccchhhcccCcceeeeeecccccc-ccccCCCCCCH
Confidence              0111111221    12689999999999887765    3345999999999999999999999999 89999999999


Q ss_pred             HHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          277 FHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       277 Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      ||+|+++|+.+++++|+++|++++.    +|++|+||||+|++.|+.+++++|
T Consensus       334 Lh~A~~~g~~~iv~~Ll~~GAd~n~----~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         334 LHQAAQQGHTDIVTLLLKNGASPNE----VSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCC----CCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999864    999999999999999998776654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-36  Score=289.07  Aligned_cols=229  Identities=18%  Similarity=0.146  Sum_probs=179.3

Q ss_pred             CCCCCChHHhHHHHcCCHHHHHHHHHcCCCCC---ccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcH
Q 037778           36 ISKRKDTALHIAAAAKQYGFVKELVQRMEPGD---LAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLP  112 (575)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~---l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  112 (575)
                      +|.+|+||||+||+.|+.+++++|++.  +++   ++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~--~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHc--CCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchh
Confidence            478899999999999999999999988  555   7788889999999999999999999999999986 8889999999


Q ss_pred             HHHHHHcCChHHHHHHHhccc-ccc--Cc--------CchhhHH---HHHHHhCcHHHHHHHHHhhhccccccccCCCCc
Q 037778          113 IDLAASLGHEDMVVYLYGQTK-NSL--ND--------EDRSHLL---VTLIQTDLYDVALRVFEDLHEKSAIGRAANEET  178 (575)
Q Consensus       113 L~~A~~~g~~~~v~~Ll~~~~-~~~--~~--------~~g~t~L---~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~t  178 (575)
                      ||+|+..++.+++++|++... ...  .+        .......   ..............+... .+..++.+|.+|.|
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~in~~d~~g~T  160 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED-WRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC-GGGGTTCCCTTSCC
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhh-cCcccccccccCcc
Confidence            999999999999999988765 111  00        0111111   111111111222222233 46677788999999


Q ss_pred             HHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHH
Q 037778          179 ALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLIL  258 (575)
Q Consensus       179 pLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~L  258 (575)
                      |||+|+..++                          .+++++|++.+.+.+..+   ...|.||||+|++.|+.+++++|
T Consensus       161 pLh~A~~~~~--------------------------~~~v~~Ll~~~~~~~~~~---~~~g~TpL~~A~~~~~~~~v~~L  211 (255)
T d1oy3d_         161 PLHVAVIHKD--------------------------AEMVRLLRDAGADLNKPE---PTCGRTPLHLAVEAQAASVLELL  211 (255)
T ss_dssp             HHHHHHHTTC--------------------------HHHHHHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccc--------------------------cccccchhcccccccccc---cccccccccccccccHHHHHHHH
Confidence            9999999984                          789999999998887654   34566999999999999999999


Q ss_pred             HHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcc
Q 037778          259 IREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA  298 (575)
Q Consensus       259 l~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  298 (575)
                      +++|++ ++.+|..|+||||+|+.+++.+++++|+++|++
T Consensus       212 l~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         212 LKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999 899999999999999999999999999999996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-35  Score=274.28  Aligned_cols=220  Identities=19%  Similarity=0.207  Sum_probs=176.8

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      .++.|+.+|..|+.+.++.++..++..++.+ |.+|+||||+|+..|+.++++++++.  +.+....+..+.++++.|+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~-D~~G~TpLh~Aa~~g~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCSCCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCc-CCCCCCHHHHHHHhhhhccccccccc--cccccccccccccccccccc
Confidence            4678999999999999999999888888887 99999999999999999999999998  78888888889999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhh
Q 037778           85 SGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDL  164 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~  164 (575)
                      .|+.++++.|+++++++ +.+|.+|.||||+|+..|+.+++++|++.+.                               
T Consensus        80 ~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~-------------------------------  127 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA-------------------------------  127 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-------------------------------
T ss_pred             ccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCC-------------------------------
Confidence            99999999999999986 8899999999999999999999999988755                               


Q ss_pred             hccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHH
Q 037778          165 HEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIF  244 (575)
Q Consensus       165 ~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh  244 (575)
                         +++.+|.+|.||||+++..++                          .+++++|.+.+.+++..+    ..|.||||
T Consensus       128 ---d~~~~~~~~~t~L~~a~~~~~--------------------------~~~~~~L~~~~~~i~~~d----~~g~TpL~  174 (223)
T d1uoha_         128 ---NPDAKDHYEATAMHRAAAKGN--------------------------LKMIHILLYYKASTNIQD----TEGNTPLH  174 (223)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTC--------------------------HHHHHHHHHTTCCSCCCC----TTCCCHHH
T ss_pred             ---CCCCcCCCCCccchhhhhcCC--------------------------cchhhhhccccceeeecc----CCCCceec
Confidence               334556666666666666652                          445555555555555443    22336666


Q ss_pred             HHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778          245 DAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ  294 (575)
Q Consensus       245 ~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  294 (575)
                      .|+..|+.+++++|++.|+| ++.+|.+|+||||+| ++|+.+++++|++
T Consensus       175 ~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         175 LACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            67777777888888888887 777888888888877 4677778877764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=275.80  Aligned_cols=266  Identities=17%  Similarity=0.155  Sum_probs=236.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      ++.|+||.|++.|+.++|+.|++ .|++++.+.+..|.||||+|+..|+.+++++|++.  +...+..+..+.+|.+.|+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~-~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~--~~~~~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc--cccccccccccchhhHHHh
Confidence            57899999999999999999998 58999888677899999999999999999999999  7888888999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cc----------cCcCchhhHHHHHHHhC
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NS----------LNDEDRSHLLVTLIQTD  152 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~----------~~~~~g~t~L~~a~~~~  152 (575)
                      ..+..+.....++...+. ...+..+.|+++.|+..|+...++.+++... .+          ..+..|.||||.|++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             hcCCccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcC
Confidence            999999999999988775 6788899999999999999999999887654 11          24567899999999999


Q ss_pred             cHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh
Q 037778          153 LYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR  232 (575)
Q Consensus       153 ~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~  232 (575)
                      +.++++.|+++ .+.+++.++..|.++.+.+.....                      .....+++++|+++|++++..+
T Consensus       160 ~~~~~~~Ll~~-~~~~i~~~~~~~~~~~~~~~~~~~----------------------~~~~~~i~~~Li~~ga~~n~~~  216 (285)
T d1wdya_         160 HVEVLKILLDE-MGADVNACDNMGRNALIHALLSSD----------------------DSDVEAITHLLLDHGADVNVRG  216 (285)
T ss_dssp             CHHHHHHHHHT-SCCCTTCCCTTSCCHHHHHHHCSC----------------------TTTHHHHHHHHHHTTCCSSCCC
T ss_pred             CHHHHHHHHhc-cCCCcccccCCCCccccccccccc----------------------chHHHHHHHHHHHCCCCCCccC
Confidence            99999999998 789999999999999988776542                      1113679999999999988765


Q ss_pred             hhcccCCChHHHHHHHcCCHHHHHHHHHH-CCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhh
Q 037778          233 ISNLIAEPELIFDAARQGNLEFLLILIRE-YPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDL  301 (575)
Q Consensus       233 ~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~-~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  301 (575)
                          ..|.||||.|++.|+.++++.|++. +.+ ++.+|.+|+||||+|+++|+.+++++|+++|++++.
T Consensus       217 ----~~g~t~L~~a~~~~~~~~v~~lL~~~g~d-in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         217 ----ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             ----TTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             ----CCCCCccchhhhcCcHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence                3455999999999999999999986 667 899999999999999999999999999999999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.2e-35  Score=286.52  Aligned_cols=263  Identities=17%  Similarity=0.092  Sum_probs=199.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcC------CCCCccccccCCChHH
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRM------EPGDLAQENNVGYTAL   79 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~------~~~~l~~~d~~g~TpL   79 (575)
                      .||||.|+..+..+.+++.|.+.+.  +...+++|+||||+||..|+.++|+.|+.+.      .|+++|.+|.+|+|||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~--n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESV--NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTT--TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCC--CcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            4788876655444444455654444  4332356999999999999999998875431      2789999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHH
Q 037778           80 FFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALR  159 (575)
Q Consensus        80 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  159 (575)
                      |+|++.|+.+++++|+++|+++ +.+|.+|.|||++|+..++.++++++.....                          
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~--------------------------  131 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTK--------------------------  131 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHH--------------------------
T ss_pred             cccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhccc--------------------------
Confidence            9999999999999999999996 8899999999999999999999998887654                          


Q ss_pred             HHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhh----hhc
Q 037778          160 VFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSR----ISN  235 (575)
Q Consensus       160 Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~----~~~  235 (575)
                           .....+..+..+.++.+.+...+..                       .....+..+.+.........    ...
T Consensus       132 -----~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (277)
T d2fo1e1         132 -----LKGDIEELDRNGMTALMIVAHNEGR-----------------------DQVASAKLLVEKGAKVDYDGAARKDSE  183 (277)
T ss_dssp             -----HHHTTSCCCTTSCCHHHHHHHSCST-----------------------THHHHHHHHHHHTCCSSCCSGGGTSSS
T ss_pred             -----ccccccccccccchhHHHHHhcccc-----------------------ccccccccccccccccccccccccccc
Confidence                 1222334555666666666655420                       01222223332222111100    011


Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHH
Q 037778          236 LIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILH  315 (575)
Q Consensus       236 ~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LH  315 (575)
                      ...+.||||.++..++.++++.++.......+.+|..|+||||+|+++|+.+++++|+++|++++    .+|.+|+||||
T Consensus       184 ~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin----~~d~~G~T~L~  259 (277)
T d2fo1e1         184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----AVDATDHTARQ  259 (277)
T ss_dssp             SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----CCCSSSCCHHH
T ss_pred             ccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC----CcCCCCCCHHH
Confidence            23455999999999999999998877666588899999999999999999999999999999985    49999999999


Q ss_pred             HHhhCCCCCccccc
Q 037778          316 LAAMLPPQDRLNIV  329 (575)
Q Consensus       316 lAa~~~~~~~~~~l  329 (575)
                      +|++.|+.+++++|
T Consensus       260 ~A~~~~~~~iv~lL  273 (277)
T d2fo1e1         260 LAQANNHHNIVDIF  273 (277)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHH
Confidence            99999998877765

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=265.26  Aligned_cols=216  Identities=23%  Similarity=0.219  Sum_probs=175.5

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL  119 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  119 (575)
                      +++.|+.+|+.|+.+.|+.+++.. +.+++.+|.+|+||||+|+..|+.+++++|++.+... ...+..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence            356777777777777776666653 6667777777777777777777777777777777664 55566677777777777


Q ss_pred             CChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhh
Q 037778          120 GHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQR  199 (575)
Q Consensus       120 g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~  199 (575)
                      |+.+++++|+++                                  +.+++.+|.+|.||||+|+..++           
T Consensus        81 ~~~~i~~~Ll~~----------------------------------~~d~~~~d~~g~tpL~~A~~~~~-----------  115 (223)
T d1uoha_          81 GRDEIVKALLGK----------------------------------GAQVNAVNQNGCTPLHYAASKNR-----------  115 (223)
T ss_dssp             TCHHHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHHHHHHTC-----------
T ss_pred             cccchhHHHhcc----------------------------------CceeEeeCCCCCchhhHHHHcCC-----------
Confidence            777777776665                                  44566789999999999999884           


Q ss_pred             hhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHH
Q 037778          200 GFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHT  279 (575)
Q Consensus       200 ~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~  279 (575)
                                     .+++++|++.|++++..+    ..+.||||.|+..|+.++++.|++.+.+ ++.+|.+|+||||+
T Consensus       116 ---------------~e~~~~Ll~~g~d~~~~~----~~~~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~  175 (223)
T d1uoha_         116 ---------------HEIAVMLLEGGANPDAKD----HYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHL  175 (223)
T ss_dssp             ---------------HHHHHHHHHTTCCTTCCC----TTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHH
T ss_pred             ---------------HHHHHHHHHCCCCCCCcC----CCCCccchhhhhcCCcchhhhhccccce-eeeccCCCCceecc
Confidence                           789999999999887665    3455999999999999999999999999 89999999999999


Q ss_pred             HHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCccc
Q 037778          280 AVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDRLN  327 (575)
Q Consensus       280 A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~  327 (575)
                      |+.+|+.+++++|+++|++++.    +|.+|+||||+|+ .++.++++
T Consensus       176 Aa~~g~~~~v~~LL~~Gad~~~----~d~~g~tpl~~A~-~~~~~i~~  218 (223)
T d1uoha_         176 ACDEERVEEAKLLVSQGASIYI----ENKEEKTPLQVAK-GGLGLILK  218 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHCC-TTHHHHHH
T ss_pred             ccccCcHHHHHHHHHCCCCCCC----CCCCCCCHHHHHH-CCCHHHHh
Confidence            9999999999999999999865    9999999999984 56655443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-33  Score=261.60  Aligned_cols=222  Identities=11%  Similarity=0.114  Sum_probs=163.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCcc---ccccCCChHHHHH
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLA---QENNVGYTALFFA   82 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~---~~d~~g~TpLh~A   82 (575)
                      ++|||+||..|+.+.++.|++..+..++.+ |.+|+||||+|+..|+.+++++|+++  +++++   ..|..|.||+|+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSK--MENVNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTT--CTTCCGGGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHcCCccccchhhhh--hcccccccccccccccccccc
Confidence            478888888888888888888777777776 78888888888888888888888887  66654   4556678888888


Q ss_pred             HHcCCHHHHHHHHhcCccc-cccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           83 AASGMVELAREIMTHNKAI-ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      +..+..++++.++..+... ....+..+.||++.++..++.+++++|++.+. ....+.+|+||||.|+..++.++++.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            8888888888877776542 24566677788888888888888888877766 444555666666666666666666666


Q ss_pred             HHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCC
Q 037778          161 FEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEP  240 (575)
Q Consensus       161 l~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~  240 (575)
                      ++. .+.+++.+|.+|+                                                               
T Consensus       158 l~~-~~~~in~~d~~g~---------------------------------------------------------------  173 (229)
T d1ixva_         158 CGL-GKSAVNWQDKQGW---------------------------------------------------------------  173 (229)
T ss_dssp             HTT-TCCCSCCCCTTSC---------------------------------------------------------------
T ss_pred             ccc-ccccccccccccC---------------------------------------------------------------
Confidence            655 3444444444444                                                               


Q ss_pred             hHHHHHHHcCCHHHHHHHHH-HCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcc
Q 037778          241 ELIFDAARQGNLEFLLILIR-EYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAA  298 (575)
Q Consensus       241 tpLh~Aa~~g~~~iv~~Ll~-~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  298 (575)
                      ||||+|++.|+.+++++|++ .|+| ++.+|.+|+||||+|+.   .+++++|+++|+|
T Consensus       174 TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         174 TPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             CchhhhcccccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            55555556667888998886 4788 78899999999999884   5789999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-33  Score=270.17  Aligned_cols=239  Identities=15%  Similarity=0.070  Sum_probs=174.6

Q ss_pred             cccccCCChHHHHHHHcCCHHHHHHHHhcCcc--ccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHH
Q 037778           69 AQENNVGYTALFFAAASGMVELAREIMTHNKA--IATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLL  145 (575)
Q Consensus        69 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L  145 (575)
                      +..|++|+||||+||+.|+.+++++|++.+++  ..+.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            34678999999999999999999999998765  336788999999999999999999999999999 888999999999


Q ss_pred             HHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHh
Q 037778          146 VTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKV  225 (575)
Q Consensus       146 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~  225 (575)
                      |.|+..++.++++.|++. ......    +...............    .........     ................+
T Consensus        83 ~~A~~~~~~~~~~~Ll~~-~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~  148 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQP-RPSHPR----DASDTYLTQSQDCTPD----TSHAPAAVD-----SQPNPENEEEPRDEDWR  148 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSS-CCSSCC----CC--------------------------------------------CCCGG
T ss_pred             hhhhccCchHHHHHHHhh-ccchhc----ccchhhhhHHhhhccc----chHHHHHHH-----hhcchhHHHHHHhhhcC
Confidence            999999999999999886 221111    1111100000000000    000000000     00000011111122223


Q ss_pred             hhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhc
Q 037778          226 VLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKF  305 (575)
Q Consensus       226 ~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~  305 (575)
                      .+++..+    ..|.||||.|+..|+.+++++|++.+++.....+..|+||||+|++.++.+++++|+++|++++.    
T Consensus       149 ~~in~~d----~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~----  220 (255)
T d1oy3d_         149 LQLEAEN----YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA----  220 (255)
T ss_dssp             GGTTCCC----TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----
T ss_pred             ccccccc----ccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCC----
Confidence            3444333    44569999999999999999999999996666788999999999999999999999999998854    


Q ss_pred             ccCCCCcHHHHHhhCCCCCccccc
Q 037778          306 EDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       306 ~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      +|++|+||||+|+..++.+++++|
T Consensus       221 ~d~~g~t~L~~A~~~~~~~i~~~L  244 (255)
T d1oy3d_         221 RMYGGRTPLGSALLRPNPILARLL  244 (255)
T ss_dssp             CCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHH
Confidence            999999999999999998877766

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.3e-33  Score=274.54  Aligned_cols=259  Identities=16%  Similarity=0.150  Sum_probs=206.0

Q ss_pred             HcCCHHHHHHHHhhCCCcccc--------cCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHc
Q 037778           14 LTGDWAVARGIYDVHEGEIRA--------PISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS   85 (575)
Q Consensus        14 ~~g~~~~v~~lL~~~~~~~~~--------~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~   85 (575)
                      +....+.++.++.... +.+.        +.+.++.||||.||+.|+.++|++|+++  |++++.+|.+|.||||+|+..
T Consensus         7 ~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~~~   83 (291)
T d1s70b_           7 KQKRNEQLKRWIGSET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACID   83 (291)
T ss_dssp             HHHHHHHHHHHHHTTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHT
T ss_pred             hHhhHHHHHHHHhCcc-cccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHHhc
Confidence            3444567777666432 2221        1223457999999999999999999999  999999999999999999999


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhh
Q 037778           86 GMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDL  164 (575)
Q Consensus        86 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~  164 (575)
                      |+.+++++|++++++. ...+..+.+||+.|+..++.++++.|++.+. ....+.++.+++++|+..+..+.+..++.. 
T Consensus        84 g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~-  161 (291)
T d1s70b_          84 DNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR-  161 (291)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH-
T ss_pred             CCceeeeeeccccccc-ccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccc-
Confidence            9999999999999986 7888999999999999999999999999998 777889999999999999999999998876 


Q ss_pred             hccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHH
Q 037778          165 HEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIF  244 (575)
Q Consensus       165 ~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh  244 (575)
                      .+.........+..+.+                                 ......+..........    ...+.||||
T Consensus       162 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~----~~~g~t~L~  204 (291)
T d1s70b_         162 QGVDIEAARKEEERIML---------------------------------RDARQWLNSGHINDVRH----AKSGGTALH  204 (291)
T ss_dssp             HTCCHHHHHHHHHHHHH---------------------------------HHHHHHHHHTCCCCCCC----TTTCCCHHH
T ss_pred             ccccccccccccccccc---------------------------------ccchhhhcccccccccc----cCCCCChhh
Confidence            33322221111111111                                 11112222222222221    234459999


Q ss_pred             HHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhh
Q 037778          245 DAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAM  319 (575)
Q Consensus       245 ~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~  319 (575)
                      .|+..|+.++++.|++.|++ ++.+|.+|+||||+|++.|+.+++++|+++|++++.    +|++|+||||+|++
T Consensus       205 ~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~----~d~~G~TaL~~A~e  274 (291)
T d1s70b_         205 VAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTTTSCCS
T ss_pred             HHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHH
Confidence            99999999999999999999 899999999999999999999999999999999865    89999999999975

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=268.57  Aligned_cols=265  Identities=13%  Similarity=0.111  Sum_probs=222.5

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHHcCCCCCccccc-cCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHH
Q 037778           39 RKDTALHIAAAAKQYGFVKELVQRMEPGDLAQEN-NVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAA  117 (575)
Q Consensus        39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d-~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  117 (575)
                      +++|+||.|++.|+.|+|++|+++  |++++.++ ..|.||||+|+..|+.++++.|++.++.. ...+..+.+|.+.|+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~--G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC--CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHh
Confidence            357999999999999999999999  89998776 46999999999999999999999999986 778889999999999


Q ss_pred             HcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhh--------hccccccccCCCCcHHHHHHhcCC
Q 037778          118 SLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDL--------HEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       118 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~--------~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      ..+..+.....++... ....+..+.++++.++..+....+..++...        ........+..|.||||+|++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             hcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCC
Confidence            9999999999999877 5567888999999999999999998888751        111122345679999999999984


Q ss_pred             CCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHH-hhhCChhhhhcccCCChHHHHHH----HcCCHHHHHHHHHHCC
Q 037778          189 NYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEK-VVLLSDSRISNLIAEPELIFDAA----RQGNLEFLLILIREYP  263 (575)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~-~~~~~~~~~~~~~~~~tpLh~Aa----~~g~~~iv~~Ll~~~~  263 (575)
                                                .+++++|+++ +++++..+   ..+ .++.+.+.    ..+..++++.|+++|+
T Consensus       161 --------------------------~~~~~~Ll~~~~~~i~~~~---~~~-~~~~~~~~~~~~~~~~~~i~~~Li~~ga  210 (285)
T d1wdya_         161 --------------------------VEVLKILLDEMGADVNACD---NMG-RNALIHALLSSDDSDVEAITHLLLDHGA  210 (285)
T ss_dssp             --------------------------HHHHHHHHHTSCCCTTCCC---TTS-CCHHHHHHHCSCTTTHHHHHHHHHHTTC
T ss_pred             --------------------------HHHHHHHHhccCCCccccc---CCC-CcccccccccccchHHHHHHHHHHHCCC
Confidence                                      7899999875 66666654   223 34444433    3445679999999999


Q ss_pred             CccccccCCCCchHHHHHHcCChhHHHHHHhc-CcchhhhhhcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHH
Q 037778          264 DLIWNIDENGYTIFHTAVLHRRKRIFKLIYQI-GAAKDLILKFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLW  342 (575)
Q Consensus       264 d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w  342 (575)
                      + ++.+|..|+||||.|+++|+.+++++|++. |++++    .+|.+|+||||+|++.++.++++.|             
T Consensus       211 ~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din----~~d~~G~TpL~~A~~~~~~eiv~~L-------------  272 (285)
T d1wdya_         211 D-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL-------------  272 (285)
T ss_dssp             C-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT----CCCTTSCCHHHHHHHTTCHHHHHHH-------------
T ss_pred             C-CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc----CCCCCCCCHHHHHHHcCCHHHHHHH-------------
Confidence            9 789999999999999999999999999974 77775    4999999999999999998877666             


Q ss_pred             HHHHHHhhcccccccccC
Q 037778          343 FEEVEKAVQRRSAEAKNE  360 (575)
Q Consensus       343 ~~~v~~~~~~~~~~~~n~  360 (575)
                            +..|+++|.+|.
T Consensus       273 ------l~~GAd~n~~d~  284 (285)
T d1wdya_         273 ------CKRGASTDCGDL  284 (285)
T ss_dssp             ------HHHSSCSCCSSC
T ss_pred             ------HHCCCCCCcccC
Confidence                  558999998873

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.8e-32  Score=255.73  Aligned_cols=212  Identities=21%  Similarity=0.229  Sum_probs=171.7

Q ss_pred             ChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccc--cccCCCCCCcHHHHHHH
Q 037778           41 DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAI--ATEQDDKRVLPIDLAAS  118 (575)
Q Consensus        41 ~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~  118 (575)
                      +||||+||+.|+.+.|+.|++.. +.+++.+|.+|+||||+|+..|+.+++++|+++|+++  ....+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            58999999999999999999875 7789999999999999999999999999999998774  24677889999999999


Q ss_pred             cCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhh
Q 037778          119 LGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQ  198 (575)
Q Consensus       119 ~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~  198 (575)
                      .+..++++.++..+.                                .......+..+.||++.++..++          
T Consensus        80 ~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~~~~~~----------  117 (229)
T d1ixva_          80 VGNLEVVKSLYDRPL--------------------------------KPDLNKITNQGVTCLHLAVGKKW----------  117 (229)
T ss_dssp             HTCHHHHHHHHSSSS--------------------------------CCCTTCCCTTSCCHHHHHHHTTC----------
T ss_pred             ccccccccccccccc--------------------------------cccccccccccccccccccccch----------
Confidence            999999998887765                                11122344455566666655552          


Q ss_pred             hhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHH
Q 037778          199 RGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFH  278 (575)
Q Consensus       199 ~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh  278 (575)
                                      .++++.|++.+...+..+    ..+.||||.|+..|+.++++.|++.+++.++.+|.+|+||||
T Consensus       118 ----------------~~~~~~l~~~~~~~~~~~----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh  177 (229)
T d1ixva_         118 ----------------FEVSQFLIENGASVRIKD----KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF  177 (229)
T ss_dssp             ----------------HHHHHHHHHTTCCSCCCC----TTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHH
T ss_pred             ----------------hhhhhhhhhhcccccccC----CCCCCccchhhhcccccccccccccccccccccccccCCchh
Confidence                            455556666555554433    233478888888888999999999987768999999999999


Q ss_pred             HHHHcCChhHHHHHHh-cCcchhhhhhcccCCCCcHHHHHhh
Q 037778          279 TAVLHRRKRIFKLIYQ-IGAAKDLILKFEDPKKNNILHLAAM  319 (575)
Q Consensus       279 ~A~~~~~~~iv~~Ll~-~~~~~~~l~~~~d~~G~T~LHlAa~  319 (575)
                      +|+++|+.+++++|++ .|++++.    +|.+|+||||+|++
T Consensus       178 ~A~~~~~~~~v~~Ll~~~gad~~~----~d~~g~t~l~~A~~  215 (229)
T d1ixva_         178 HALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVALN  215 (229)
T ss_dssp             HHHHTTCHHHHHHHHHHHCCCSCC----CCTTSCCTGGGCSC
T ss_pred             hhcccccHHHHHHHHHhcCCCCCC----cCCCCCCHHHHHhh
Confidence            9999999999999996 5998865    99999999999984

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=6.2e-32  Score=265.30  Aligned_cols=248  Identities=19%  Similarity=0.231  Sum_probs=207.3

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      .+.|+|+.||..|+.++|+.||+. |++++.+ |.+|.||||+|+..|+.++|++|+++  +.+....+..+.||||.|+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHC-CCCCCcc-CCCCCcHHHHHHhcCCceeeeeeccc--ccccccccccccccccccc
Confidence            356999999999999999999985 8899987 99999999999999999999999999  8888899999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      ..|+.++++.|++.++.. ...|..+.+|+++|+..++.+.++.+++...  .......+..+.+       .... ..+
T Consensus       115 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~-~~~  185 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------RDAR-QWL  185 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------HHHH-HHH
T ss_pred             cccccchhhcccccCccc-ccccccCccccccccccccchhcccccccccccccccccccccccc-------ccch-hhh
Confidence            999999999999999886 8889999999999999999999999997654  1111111111111       1111 222


Q ss_pred             HhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCCh
Q 037778          162 EDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPE  241 (575)
Q Consensus       162 ~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~t  241 (575)
                      .. ........+.+|.||||+|+..++                          .++++.|++.|++++..+    ..|.|
T Consensus       186 ~~-~~~~~~~~~~~g~t~L~~a~~~~~--------------------------~~~~~~Ll~~g~din~~~----~~g~T  234 (291)
T d1s70b_         186 NS-GHINDVRHAKSGGTALHVAAAKGY--------------------------TEVLKLLIQARYDVNIKD----YDGWT  234 (291)
T ss_dssp             HH-TCCCCCCCTTTCCCHHHHHHHHTC--------------------------HHHHHHHHTTTCCTTCCC----TTCCC
T ss_pred             cc-cccccccccCCCCChhhHHHHcCC--------------------------hhhhcccccceecccccc----cCCCC
Confidence            22 355556778899999999999984                          899999999999988765    34559


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 037778          242 LIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKD  300 (575)
Q Consensus       242 pLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  300 (575)
                      |||+|++.|+.++|++|+++|+| ++.+|.+|+||||+|++    +++++|.+.....+
T Consensus       235 pL~~A~~~g~~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~e----~~~~~L~~~~~~~~  288 (291)
T d1s70b_         235 PLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE----DILGYLEELQKKQN  288 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCS----GGGHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH----HHHHHHHHHhhhcc
Confidence            99999999999999999999999 89999999999999974    68888887655443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-30  Score=242.33  Aligned_cols=223  Identities=19%  Similarity=0.177  Sum_probs=172.1

Q ss_pred             CCCChHHhHHHHcCCHHHHHHHHHcC--CCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHH
Q 037778           38 KRKDTALHIAAAAKQYGFVKELVQRM--EPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDL  115 (575)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  115 (575)
                      .+|+||||+||+.|+.++|+.|++..  .|.+++.+|.+|+||||+|+..|+.++++.|++++++. +..+..|.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-ccccccccccccc
Confidence            36899999999999999999888621  27889999999999999999999999999999999886 7888889999999


Q ss_pred             HHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccch
Q 037778          116 AASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTK  195 (575)
Q Consensus       116 A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~  195 (575)
                      |...++.++++.+......                              .....+.......++|+.+.....       
T Consensus        80 a~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~l~~~~~~~~-------  122 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAP------------------------------GTLDLEARNYDGLTALHVAVNTEC-------  122 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCT------------------------------TSCCTTCCCTTSCCHHHHHHHHTC-------
T ss_pred             ccccccccchhhhhhcccc------------------------------cccccccccccccccccccccccc-------
Confidence            9999999888877765430                              011112334445566666555441       


Q ss_pred             hhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCc
Q 037778          196 QYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYT  275 (575)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t  275 (575)
                                         ....+.+.....+.....   ...+.+|++.|+..+..++++.+++.+.+ .+.+|..|+|
T Consensus       123 -------------------~~~~~~l~~~~~~~~~~~---~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t  179 (228)
T d1k1aa_         123 -------------------QETVQLLLERGADIDAVD---IKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSS  179 (228)
T ss_dssp             -------------------HHHHHHHHHTTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCB
T ss_pred             -------------------chhhhhhhcccccccccc---ccchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcc
Confidence                               233333433333322222   23345888999999999999999999988 7889999999


Q ss_pred             hHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCc
Q 037778          276 IFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDR  325 (575)
Q Consensus       276 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~  325 (575)
                      |||+|+.+|+.+++++|+++|++++.    +|.+|+||||+|++.++.++
T Consensus       180 ~L~~A~~~g~~~~v~~Ll~~Gad~n~----~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         180 ALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhCCCccc
Confidence            99999999999999999999998864    89999999999998887554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.1e-30  Score=252.06  Aligned_cols=232  Identities=19%  Similarity=0.147  Sum_probs=182.6

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHhh-------CCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCC
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYDV-------HEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVG   75 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~~-------~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g   75 (575)
                      ++|+||||+||..|+.++++.|+..       .|++++.+ |.+|+||||+|++.|+.++|++|+++  |++++.+|.+|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~--Gad~n~~~~~g  107 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKSE  107 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc-CCCCCeeecccccccccccccccccc--ccccccccccc
Confidence            4699999999999999999877542       57899987 99999999999999999999999999  99999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCcc--ccccCCCCCCcHHHHHHHcCChHH---HHHHHhccccccCcCchhhHHHHHHH
Q 037778           76 YTALFFAAASGMVELAREIMTHNKA--IATEQDDKRVLPIDLAASLGHEDM---VVYLYGQTKNSLNDEDRSHLLVTLIQ  150 (575)
Q Consensus        76 ~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~~~~~~g~t~L~~a~~  150 (575)
                      +||||+|+..++.++++.+......  ..+..+..+.++.+.+...+..+.   +..+.+.......             
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  174 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY-------------  174 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC-------------
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccc-------------
Confidence            9999999999999999999876532  235678889999999988876543   3333332220000             


Q ss_pred             hCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHH-HHhhhCC
Q 037778          151 TDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLW-EKVVLLS  229 (575)
Q Consensus       151 ~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~-~~~~~~~  229 (575)
                                  . .....+..+.+|.||||.++..++                          .+.++.++ ..+.+.+
T Consensus       175 ------------~-~~~~~~~~~~~g~t~L~~~~~~~~--------------------------~~~~~~~l~~~~~~~~  215 (277)
T d2fo1e1         175 ------------D-GAARKDSEKYKGRTALHYAAQVSN--------------------------MPIVKYLVGEKGSNKD  215 (277)
T ss_dssp             ------------C-SGGGTSSSSCCCCCTHHHHHSSCC--------------------------HHHHHHHHHHSCCCTT
T ss_pred             ------------c-ccccccccccCCCCcccccccccc--------------------------cccccccccccccccc
Confidence                        0 122334566778888888887773                          45555544 3344444


Q ss_pred             hhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 037778          230 DSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQ  294 (575)
Q Consensus       230 ~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  294 (575)
                      ..+    ..|.||||+|++.|+.+++++|+++|+| ++.+|.+|+||||+|+++|+.+++++|.+
T Consensus       216 ~~d----~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         216 KQD----EDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCC----TTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ccC----CCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            333    3345899999999999999999999999 89999999999999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-30  Score=243.09  Aligned_cols=202  Identities=18%  Similarity=0.174  Sum_probs=166.4

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHHcC--CCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           39 RKDTALHIAAAAKQYGFVKELVQRM--EPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        39 ~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      +|+||||+|+..|+.++++.|++..  .+.+++.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccccc
Confidence            5899999999999976555544322  17789999999999999999999999999999999996 88999999999999


Q ss_pred             HHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchh
Q 037778          117 ASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQ  196 (575)
Q Consensus       117 ~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~  196 (575)
                      +..|+.++++.|++.+....                            ..........+|.||||.|+..++        
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~----------------------------~~~~~~~~~~~~~t~l~~a~~~~~--------  123 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPH----------------------------LHSILKATNYNGHTCLHLASIHGY--------  123 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTS----------------------------SSCGGGCCCTTCCCHHHHHHHTTC--------
T ss_pred             cccccccccchhhhhccccc----------------------------ccccccccccccchhhhHHhhcCC--------
Confidence            99999999999988765100                            122233456678889999888873        


Q ss_pred             hhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCch
Q 037778          197 YQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTI  276 (575)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~  276 (575)
                                        .+.++++.+.+...+..+   +..|.||||.|++.|+.+++++|+++|+| ++.+|.+|+||
T Consensus       124 ------------------~~~~~~l~~~~~~~~~~~---~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tp  181 (221)
T d1iknd_         124 ------------------LGIVELLVSLGADVNAQE---PCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSP  181 (221)
T ss_dssp             ------------------HHHHHHHHHHTCCTTCCC---TTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCG
T ss_pred             ------------------hhheeeecccCccccccc---ccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCH
Confidence                              778888888888777654   34466999999999999999999999999 89999999999


Q ss_pred             HHHHHHcCChhHHHHHHhcCcch
Q 037778          277 FHTAVLHRRKRIFKLIYQIGAAK  299 (575)
Q Consensus       277 Lh~A~~~~~~~iv~~Ll~~~~~~  299 (575)
                      ||+|++.++.+++++|++.+.+.
T Consensus       182 l~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         182 YQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             GGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcc
Confidence            99999999999999999987653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-28  Score=229.05  Aligned_cols=221  Identities=16%  Similarity=0.136  Sum_probs=175.9

Q ss_pred             cccchHHHHHHHcCCHHHHHHHHh---hCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHH
Q 037778            3 RRRRLKLYRAALTGDWAVARGIYD---VHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTAL   79 (575)
Q Consensus         3 ~~~~t~L~~Aa~~g~~~~v~~lL~---~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpL   79 (575)
                      .+|+||||.||..|+.++++.|++   +.+.+++.+ |.+|+||||+|+..|+.+++++|+++  +++.+..+..|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~-d~~g~TpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCcc-CCCCCccceehhcccccccccccccc--ccccccccccccccc
Confidence            369999999999999999998876   478889887 99999999999999999999999998  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCccc---cccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHH
Q 037778           80 FFAAASGMVELAREIMTHNKAI---ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDV  156 (575)
Q Consensus        80 h~Aa~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~  156 (575)
                      +.|...++.++++.+.......   .+.....+.+||+.+.........+.|.....                       
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-----------------------  134 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA-----------------------  134 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----------------------
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccc-----------------------
Confidence            9999999999999887764432   24455567788888888887777777766544                       


Q ss_pred             HHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcc
Q 037778          157 ALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNL  236 (575)
Q Consensus       157 ~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~  236 (575)
                                ......+..|.+|++.|+..+.                          .++++.+++.+...+..+    
T Consensus       135 ----------~~~~~~~~~~~~~l~~a~~~~~--------------------------~~~~~~~~~~~~~~~~~d----  174 (228)
T d1k1aa_         135 ----------DIDAVDIKSGRSPLIHAVENNS--------------------------LSMVQLLLQHGANVNAQM----  174 (228)
T ss_dssp             ----------CTTCCCTTTCCCHHHHHHHTTC--------------------------HHHHHHHHHTTCCTTCBC----
T ss_pred             ----------ccccccccchhhHHHHHHHhhh--------------------------hhhhhhhhhhcccccccc----
Confidence                      2222344456666666666552                          455556666655555443    


Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHH
Q 037778          237 IAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFK  290 (575)
Q Consensus       237 ~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~  290 (575)
                      ..|.||||+|+..|+.+++++|+++|+| ++.+|.+|+||||+|+++|+.+++|
T Consensus       175 ~~g~t~L~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         175 YSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhCCCccccC
Confidence            2344888888888899999999999999 8899999999999999999888874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=7.6e-28  Score=223.71  Aligned_cols=204  Identities=17%  Similarity=0.155  Sum_probs=126.3

Q ss_pred             HHHHHHHHHcCCCCCccc-cccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhc
Q 037778           53 YGFVKELVQRMEPGDLAQ-ENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQ  131 (575)
Q Consensus        53 ~~~v~~Ll~~~~~~~l~~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  131 (575)
                      .|+|++|+++  |.+++. .|.+|+||||+||..|+.+++++|++.++++ +.++..+.+|++.++..++.+........
T Consensus         2 ~~~v~~Ll~~--g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQ--GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHC--CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            4788888888  788876 4788888888888888888888888888886 78888888888888888887766666555


Q ss_pred             cc--cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhH
Q 037778          132 TK--NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIEN  209 (575)
Q Consensus       132 ~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (575)
                      ..  .......+.++.+.+.........+.|...  +.+++.++..|.|||+.++..+.                     
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~t~l~~~~~~~~---------------------  135 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITA--DADINAADNSGKTALHWAAAVNN---------------------  135 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTC---------------------
T ss_pred             cccccccccccccccccccccccchhhhhhhhhh--cccccccCCCCCCcchhhcccCc---------------------
Confidence            44  233344455555555555555555555543  55555555556655555555542                     


Q ss_pred             hhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHH
Q 037778          210 KRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIF  289 (575)
Q Consensus       210 ~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv  289 (575)
                           .++++.+++.+.+++..+    ..|.||||.|+..|+.++++.|+++|+| ++.+|.+|+||||+|+++|+.+++
T Consensus       136 -----~~~~~~l~~~~~~~~~~d----~~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         136 -----TEAVNILLMHHANRDAQD----DKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIV  205 (209)
T ss_dssp             -----HHHHHHHHHTTCCTTCCC----TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             -----ceeeeeeccccccccccc----cccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHH
Confidence                 344444444444444333    1223555555555555555555555555 445555555555555555555555


Q ss_pred             HHH
Q 037778          290 KLI  292 (575)
Q Consensus       290 ~~L  292 (575)
                      ++|
T Consensus       206 ~lL  208 (209)
T d1ot8a_         206 RLL  208 (209)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.9e-29  Score=233.73  Aligned_cols=180  Identities=13%  Similarity=0.039  Sum_probs=160.4

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHh---hCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYD---VHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALF   80 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~---~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh   80 (575)
                      +|+||||+|+..|+.+.+..+++   ..+.+++.+ |.+|+||||+|++.|+.+++++|++.  |++++.+|..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~-d~~g~TpLh~A~~~~~~~iv~~L~~~--g~d~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccC-CCCCCccccccccccccccccccccc--cccccccccccccccc
Confidence            58999999999999877665554   257788887 99999999999999999999999999  8999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccc-----cccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCc
Q 037778           81 FAAASGMVELAREIMTHNKAI-----ATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDL  153 (575)
Q Consensus        81 ~Aa~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~  153 (575)
                      +|+..|+.++++.|++.+...     .......|.||||.|+..++.+++++|++.+.  ....+.+|.||||+|+..|+
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc
Confidence            999999999999999876432     34556678999999999999999999999988  34456789999999999999


Q ss_pred             HHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778          154 YDVALRVFEDLHEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       154 ~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      .+++++|++.  +.+++.+|.+|.||||+|+..++
T Consensus       158 ~~~v~~Ll~~--gad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         158 PDLVSLLLKC--GADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             HHHHHHHHTT--TCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             HHHHHHHHhc--CCcccccCCCCCCHHHHHHHCCC
Confidence            9999999987  89999999999999999999983

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=4.8e-29  Score=250.43  Aligned_cols=229  Identities=10%  Similarity=0.010  Sum_probs=120.0

Q ss_pred             CCCCChHHhHHHHcCCHHHHHH---HHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCC--CCCCc
Q 037778           37 SKRKDTALHIAAAAKQYGFVKE---LVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQD--DKRVL  111 (575)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~~v~~---Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~--~~g~t  111 (575)
                      +..|.||||+|+++||.+++++   |++.  +++++.+|.+|+||||+||++|+.++|++|++.|+++ +..+  .+|.|
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t  163 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYH  163 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCC
Confidence            4455555555555555544443   3444  5555555555555555555555555555555555553 3222  23555


Q ss_pred             HHHHHHHcCChHHHHHHHhccc----cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccc-------cccCCCCcHH
Q 037778          112 PIDLAASLGHEDMVVYLYGQTK----NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAI-------GRAANEETAL  180 (575)
Q Consensus       112 pL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~-------~~d~~g~tpL  180 (575)
                      |||+|+.+||.++|++|++.++    .+..+.++.+|++.|+.+|+.+++++|++.  +.+.+       ..+..+.+++
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~  241 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--PVMLAYAEIHEFEYGEKYVNPF  241 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS--HHHHHHHHHCTTTTTTTTHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC--CCCcchHHHHHHHcCcHhhhHH
Confidence            5555555555555555555554    122334445555555555555555555554  22211       1123334444


Q ss_pred             HHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhh--CC--hhh-hhcccCCChHHHHHHHcCCHHHH
Q 037778          181 HALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVL--LS--DSR-ISNLIAEPELIFDAARQGNLEFL  255 (575)
Q Consensus       181 h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~--~~--~~~-~~~~~~~~tpLh~Aa~~g~~~iv  255 (575)
                      +.+...+.                          .+....+.....+  .+  ... ........++++.|+..|+.+++
T Consensus       242 ~~~~~~~~--------------------------~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v  295 (346)
T d2ajaa1         242 IARHVNRL--------------------------KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI  295 (346)
T ss_dssp             HHHHHHHH--------------------------HHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred             HHHhhccc--------------------------hHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHH
Confidence            44433220                          0000000000000  00  000 00000112889999999999999


Q ss_pred             HHHHHHCCCc----cccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 037778          256 LILIREYPDL----IWNIDENGYTIFHTAVLHRRKRIFKLIYQIG  296 (575)
Q Consensus       256 ~~Ll~~~~d~----~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  296 (575)
                      ++|++.+...    ....+.+|+||||+|+++|+.+++++|++.+
T Consensus       296 ~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         296 RFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             HHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence            9999876542    2234567999999999999999999999853

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.9e-27  Score=221.03  Aligned_cols=205  Identities=15%  Similarity=0.121  Sum_probs=179.4

Q ss_pred             HHHHHHHHhcCcccccc-CCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhh
Q 037778           88 VELAREIMTHNKAIATE-QDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLH  165 (575)
Q Consensus        88 ~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  165 (575)
                      .|+|+.|+++|+++ +. .|.+|.||||+||..|+.+++++|++.++ .+..+..+.++++.++..+..+........ .
T Consensus         2 ~~~v~~Ll~~g~di-n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAEL-NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN-R   79 (209)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-T
T ss_pred             HHHHHHHHHCCCCc-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccc-c
Confidence            58999999999997 54 68999999999999999999999999999 888999999999999999888877777666 5


Q ss_pred             ccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHHHhhhCChhhhhcccCCChHHHH
Q 037778          166 EKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWEKVVLLSDSRISNLIAEPELIFD  245 (575)
Q Consensus       166 ~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~~~~~~~~~~~~~~~~~~tpLh~  245 (575)
                      ..........|.++.+.+.....                          ....+.|.+.+.+++..+    ..+.||++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~L~~~~~~~~~~~----~~~~t~l~~  129 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAI--------------------------EGMVEDLITADADINAAD----NSGKTALHW  129 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTC--------------------------TTHHHHHHHTTCCTTCBC----TTSCBHHHH
T ss_pred             ccccccccccccccccccccccc--------------------------hhhhhhhhhhcccccccC----CCCCCcchh
Confidence            55555667778888888877662                          456777888888877665    344599999


Q ss_pred             HHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHhhCCCCCc
Q 037778          246 AARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAAMLPPQDR  325 (575)
Q Consensus       246 Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa~~~~~~~  325 (575)
                      |+..|..++++.+++.+.+ ++..|.+|.||||+|+.+|+.+++++|+++|++++.    +|.+|+||||+|++.|+.++
T Consensus       130 ~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~----~d~~g~Tpl~~A~~~~~~~i  204 (209)
T d1ot8a_         130 AAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFANREI----TDHMDRLPRDVASERLHHDI  204 (209)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHH
T ss_pred             hcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999 789999999999999999999999999999999864    99999999999999999887


Q ss_pred             cccc
Q 037778          326 LNIV  329 (575)
Q Consensus       326 ~~~l  329 (575)
                      +++|
T Consensus       205 v~lL  208 (209)
T d1ot8a_         205 VRLL  208 (209)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            7654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=3.2e-29  Score=251.70  Aligned_cols=235  Identities=15%  Similarity=0.083  Sum_probs=174.9

Q ss_pred             CccccccCCChHHHHHHHcCCHHHHHH---HHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccC--cCc
Q 037778           67 DLAQENNVGYTALFFAAASGMVELARE---IMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLN--DED  140 (575)
Q Consensus        67 ~l~~~d~~g~TpLh~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~--~~~  140 (575)
                      +++.++..|.||||+||++|+.+++++   |++.|+++ +.+|.+|.||||+|+++||.++|++|++.++ .+..  +.+
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            345568899999999999999887765   78889886 8899999999999999999999999999998 5444  357


Q ss_pred             hhhHHHHHHHhCcHHHHHHHHHhhhcc--ccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHH
Q 037778          141 RSHLLVTLIQTDLYDVALRVFEDLHEK--SAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLV  218 (575)
Q Consensus       141 g~t~L~~a~~~~~~~~~~~Ll~~~~~~--~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v  218 (575)
                      |.||||+|+..|+.+++++|++. .+.  ..+..+.+|.||+|.|++.|+                          .+++
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~t~l~~A~~~g~--------------------------~~iv  213 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGH--------------------------HNVI  213 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCC--------------------------HHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHc-CCcccccccccCCCcchhhHHhhcCH--------------------------HHHH
Confidence            99999999999999999999997 322  234456678889999999984                          7899


Q ss_pred             HHHHHHhhhCChhhhhccc---CCChHHHHHHHcCCHHHHHHHHHHCCCc-cccccC-------CCCchHHHHHHcCChh
Q 037778          219 QRLWEKVVLLSDSRISNLI---AEPELIFDAARQGNLEFLLILIREYPDL-IWNIDE-------NGYTIFHTAVLHRRKR  287 (575)
Q Consensus       219 ~~L~~~~~~~~~~~~~~~~---~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~-~~~~d~-------~G~t~Lh~A~~~~~~~  287 (575)
                      ++|++.|++++........   ...++++.+...+..+....+....++. .+..+.       .+.++++.|+..++.+
T Consensus       214 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld  293 (346)
T d2ajaa1         214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLD  293 (346)
T ss_dssp             HHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHH
T ss_pred             HHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHH
Confidence            9999999877654321111   1126666666666665555444433331 111111       2357888999999999


Q ss_pred             HHHHHHhcCcchhhh-hhcccCCCCcHHHHHhhCCCCCccccc
Q 037778          288 IFKLIYQIGAAKDLI-LKFEDPKKNNILHLAAMLPPQDRLNIV  329 (575)
Q Consensus       288 iv~~Ll~~~~~~~~l-~~~~d~~G~T~LHlAa~~~~~~~~~~l  329 (575)
                      ++++|++.+...... .+..+.+|+||||+|++.|+.+++++|
T Consensus       294 ~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lL  336 (346)
T d2ajaa1         294 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL  336 (346)
T ss_dssp             HHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred             HHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHH
Confidence            999999987654321 123567899999999999999988876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=198.97  Aligned_cols=152  Identities=20%  Similarity=0.225  Sum_probs=141.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC
Q 037778            7 LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG   86 (575)
Q Consensus         7 t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g   86 (575)
                      ..||.||.+|+.+.|+.+|++.+.+++.+ |..|+||||+|+ .|+.+++++|++.  +.+++.++..|.+|++.++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~~~~v~~Ll~~--~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLKQ--GASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-ccccccccccccc--cccccccccccccccccccccc
Confidence            45999999999999999999889999987 999999999987 4899999999999  8999999999999999999999


Q ss_pred             CHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778           87 MVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus        87 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      +.++++.++++++++ +.+|..|.||||+|+..|+.+++++|++....+..|.+|.||||+|+..|+.++++.|+++
T Consensus        80 ~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccc-ccccCCCCeeeccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999996 8899999999999999999999999885433778899999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.7e-25  Score=193.68  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=144.2

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAA   83 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa   83 (575)
                      +| ++||.||..|+.++|+.|++ .+.+++.+ |.+|.||||+|+ .|+.|++++|+++  +++++.++..|.+|++.++
T Consensus         1 ~~-~~Lh~Aa~~g~~~~v~~Ll~-~g~d~n~~-d~~g~TpL~~A~-~~~~ei~~~Ll~~--~a~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           1 WG-NELASAAARGDLEQLTSLLQ-NNVNVNAQ-NGFGRTALQVMK-LGNPEIARRLLLR--GANPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             CH-HHHHHHHHHTCHHHHHHHTT-SCCCTTCC-CTTSCCHHHHCC-SSCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             Ch-HHHHHHHHcCCHHHHHHHHH-CCCCcCcc-CCcccccccccc-ccccccccccccc--ccccccccccCcccccccc
Confidence            35 89999999999999999998 58999987 999999999886 7999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc--cccCcCchhhHHHHHHHhCcHHHHHHHH
Q 037778           84 ASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK--NSLNDEDRSHLLVTLIQTDLYDVALRVF  161 (575)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  161 (575)
                      ..++.+.++.|++.+.+. +..+..|.+|+|+|+..++.+++++|+++++  .+..+.+|.||||+|+..++.+++++|+
T Consensus        75 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999986 8899999999999999999999999999987  6778999999999999999999999998


Q ss_pred             Hh
Q 037778          162 ED  163 (575)
Q Consensus       162 ~~  163 (575)
                      ++
T Consensus       154 ~~  155 (156)
T d1ihba_         154 AN  155 (156)
T ss_dssp             HT
T ss_pred             hc
Confidence            75

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.3e-25  Score=193.42  Aligned_cols=153  Identities=19%  Similarity=0.127  Sum_probs=144.3

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH  121 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  121 (575)
                      +|||+||..|+.++|+.|+++  |++++.+|.+|.||||+|+ .|+.+++++|+++++++ +..+..|.+|++.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~--g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            899999999999999999999  9999999999999999886 78999999999999996 8999999999999999999


Q ss_pred             hHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhh
Q 037778          122 EDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRG  200 (575)
Q Consensus       122 ~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~  200 (575)
                      .+.++.|++.+. .+..+..|.+++|.|+..++.++++.|+++ .+.+.+.+|.+|.||||+|++.++            
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~d~~g~TpL~~A~~~~~------------  145 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDTACDLARLYGR------------  145 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTTC------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-ccccccccCCCCCCHHHHHHHcCC------------
Confidence            999999999988 778899999999999999999999999999 677889999999999999999994            


Q ss_pred             hccchhhhHhhHHHHHHHHHHHHHh
Q 037778          201 FFSAKDIENKRQKALKLVQRLWEKV  225 (575)
Q Consensus       201 ~~~~~~~~~~~~~~~e~v~~L~~~~  225 (575)
                                    .+++++|+++|
T Consensus       146 --------------~~iv~~Ll~~G  156 (156)
T d1ihba_         146 --------------NEVVSLMQANG  156 (156)
T ss_dssp             --------------HHHHHHHHHTC
T ss_pred             --------------HHHHHHHHhcC
Confidence                          78999998765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8e-25  Score=215.26  Aligned_cols=49  Identities=18%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             cccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhcccCCCCcHHHHHh
Q 037778          266 IWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLILKFEDPKKNNILHLAA  318 (575)
Q Consensus       266 ~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~~~~d~~G~T~LHlAa  318 (575)
                      ++.+|.+|+||||+|+++|+.+++++|+++|+++++    +|++|.||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~----~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI----ANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC----CCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHcC
Confidence            567899999999999999999999999999999976    9999999999997

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.5e-23  Score=181.81  Aligned_cols=150  Identities=17%  Similarity=0.164  Sum_probs=138.1

Q ss_pred             cchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHH
Q 037778            5 RRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAA   84 (575)
Q Consensus         5 ~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~   84 (575)
                      ..||||.||+.|+.++|+.||+. +++++ . |..|.||||+|+..++.++++.++..  +......+..+.++++.++.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~-~~~g~t~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   76 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHc-CCCcc-c-ccCCCccccccccccccccccccccc--cccccccccccccccccccc
Confidence            45999999999999999999996 66665 3 89999999999999999999999988  66667778889999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHH
Q 037778           85 SGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRV  160 (575)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~L  160 (575)
                      ..+.++++.+.+.+.+. +.+|.+|.||||+|+..|+.+++++|++.++ .+..|.+|.||||+|+..|+.++++.|
T Consensus        77 ~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999986 8899999999999999999999999999999 888999999999999999999999754

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-23  Score=184.26  Aligned_cols=141  Identities=22%  Similarity=0.148  Sum_probs=131.0

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH  121 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  121 (575)
                      +.||.||..|+.++|+.|++.. +.+++.+|..|+||||+|+ .|+.++++.|++++.++ +..+..|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            4599999999999999999875 7899999999999999987 48899999999999996 8899999999999999999


Q ss_pred             hHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778          122 EDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       122 ~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      .++++++++.++ .+..+.+|.||||+|+..|+.+++++|+ .  +.+++.+|.+|+||||+|++.|+
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~--~~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-A--ESDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-T--TSCTTCCCTTSCCHHHHHHHSCC
T ss_pred             ccccccccccccccccccCCCCeeecccccccccccccccc-c--cccccccCCCCCCHHHHHHHcCC
Confidence            999999999998 7888999999999999999999999877 4  57788999999999999999994

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.4e-23  Score=180.11  Aligned_cols=143  Identities=17%  Similarity=0.130  Sum_probs=133.8

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHc
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASL  119 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  119 (575)
                      ..||||.|++.|+.++|+.||++  |++++ .|..|+||||+|+..++.++++.++...... ...+..+.++++.++..
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~--ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHc--CCCcc-cccCCCccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            35999999999999999999999  78877 6999999999999999999999999988876 67788889999999999


Q ss_pred             CChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCC
Q 037778          120 GHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNL  188 (575)
Q Consensus       120 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~  188 (575)
                      .+.+.++++++.+. ....+.+|.||||+|+..|+.+++++|++.  +.+++.+|.+|.||||+|+..|+
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~--gad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccceeeecccccCCccccccccCchHHHhhhhcchhheeeecccc--ccCCcccCCCCCCHHHHHHHcCC
Confidence            99999999999998 777899999999999999999999999987  89999999999999999999994

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3e-24  Score=211.11  Aligned_cols=204  Identities=14%  Similarity=0.048  Sum_probs=128.0

Q ss_pred             CCCcccc-ccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccccccCcCchhh
Q 037778           65 PGDLAQE-NNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTKNSLNDEDRSH  143 (575)
Q Consensus        65 ~~~l~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t  143 (575)
                      +.++|.+ |.+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.|+..++..      +.            
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~------~~------------  156 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNY------DS------------  156 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHH------HT------------
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccch------hh------------
Confidence            4567765 899999999999999999999999999997 899999999999999876520      00            


Q ss_pred             HHHHHHHhCcHHHHHHHHHhhhccccccccCCCCcHHHHHHhcCCCCcccchhhhhhhccchhhhHhhHHHHHHHHHHHH
Q 037778          144 LLVTLIQTDLYDVALRVFEDLHEKSAIGRAANEETALHALARKNLNYSHFTKQYQRGFFSAKDIENKRQKALKLVQRLWE  223 (575)
Q Consensus       144 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~d~~g~tpLh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~L~~  223 (575)
                              +..   ..+++. .......+|..|+||||.++..+..                                  
T Consensus       157 --------~~~---~~ll~~-l~~~~~~~d~~g~t~lh~~~~~~~~----------------------------------  190 (301)
T d1sw6a_         157 --------GTF---EALLDY-LYPCLILEDSMNRTILHHIIITSGM----------------------------------  190 (301)
T ss_dssp             --------TCH---HHHHHH-HGGGGGEECTTCCCHHHHHHHHHTS----------------------------------
T ss_pred             --------hhH---HHHHHH-HhhhhhhcccccCCHHHHHHHHhCc----------------------------------
Confidence                    011   111111 1233456788899999988865520                                  


Q ss_pred             HhhhCChhhhhcccCCChHHHHHHHcCCHHHHHHHHHHCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhh
Q 037778          224 KVVLLSDSRISNLIAEPELIFDAARQGNLEFLLILIREYPDLIWNIDENGYTIFHTAVLHRRKRIFKLIYQIGAAKDLIL  303 (575)
Q Consensus       224 ~~~~~~~~~~~~~~~~~tpLh~Aa~~g~~~iv~~Ll~~~~d~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~l~  303 (575)
                                       ++...++++....++..+++.+.......+..+.++++.+........+..+... ......+
T Consensus       191 -----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i  252 (301)
T d1sw6a_         191 -----------------TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK-WIIANML  252 (301)
T ss_dssp             -----------------TTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH-HHHHHTT
T ss_pred             -----------------cccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhH-HHHhcCc
Confidence                             0111111111123455566665554555666777777777666655554433211 1112224


Q ss_pred             hcccCCCCcHHHHHhhCCCCCccccccchhHhhHHHHHHHHHHHHhhcccccccccCCCCChhHHHH
Q 037778          304 KFEDPKKNNILHLAAMLPPQDRLNIVSGAALQMQRELLWFEEVEKAVQRRSAEAKNEDGLSPRALFT  370 (575)
Q Consensus       304 ~~~d~~G~T~LHlAa~~~~~~~~~~l~~~~l~~~~~l~w~~~v~~~~~~~~~~~~n~~G~Tpl~~a~  370 (575)
                      |.+|.+|+||||+|++.|+.++++.|                   +..|++++.+|++|+||+|+|.
T Consensus       253 n~~D~~G~TpLh~A~~~g~~~iv~~L-------------------l~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGNISIVDAL-------------------LDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHH-------------------HHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHH-------------------HHCCCCCCCCCCCCCCHHHHcC
Confidence            77999999999999999998877766                   5589999999999999999874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-23  Score=175.27  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=110.1

Q ss_pred             ccchHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCC-hHHHHH
Q 037778            4 RRRLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGY-TALFFA   82 (575)
Q Consensus         4 ~~~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~-TpLh~A   82 (575)
                      .+.++||.||.+|+.++++.|++ .+.+++.+ |..|.||||.|+ .|+.+++++|+++  |.+++.+|..|. ||||+|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLE-AGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHH-cCCccccc-cccccccccccc-ccccccccccccc--ccccccccccccccccccc
Confidence            45689999999999999999998 58889887 899999999775 7999999999998  899999988876 699999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhc
Q 037778           83 AASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQ  131 (575)
Q Consensus        83 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  131 (575)
                      ++.|+.+++++|+++|+++ +.+|..|.||||+|+++|+.+++++|++.
T Consensus        77 ~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999996 89999999999999999999999999753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.6e-23  Score=175.20  Aligned_cols=106  Identities=15%  Similarity=0.196  Sum_probs=98.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHc
Q 037778            6 RLKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAAS   85 (575)
Q Consensus         6 ~t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~   85 (575)
                      .|||++|++.|+.++++.|++ .+.+++.+ |.+|+||||+|+..|+.+++++|+++  |.+++.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~--g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA-KGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT-TTCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHHS--SCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHH-hhhccccc-cccccccccccccccccccccccccc--cceeeecccccccchhhhhhc
Confidence            589999999999999999998 57889887 89999999999999999999999998  899999999999999999999


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCcHHHHH
Q 037778           86 GMVELAREIMTHNKAIATEQDDKRVLPIDLA  116 (575)
Q Consensus        86 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  116 (575)
                      |+.+++++|+++|+++ +.+|.+|.||||+|
T Consensus        79 ~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a  108 (118)
T d1myoa_          79 GHVSCVKLLLSKGADK-TVKGPDGLTALEAT  108 (118)
T ss_dssp             TCCHHHHHHHTTCCCS-SSSSSSTCCCCCTC
T ss_pred             Cchhhhhhhhcccccc-eeeCCCCCCHHHHH
Confidence            9999999999999996 88999999999988

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.9e-22  Score=170.50  Aligned_cols=121  Identities=23%  Similarity=0.280  Sum_probs=107.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCcccccCCCCCChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcC
Q 037778            7 LKLYRAALTGDWAVARGIYDVHEGEIRAPISKRKDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASG   86 (575)
Q Consensus         7 t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g   86 (575)
                      ++|+.|+..|+.++++.|++ .+.+++.+ |.+|+||||+|+..|+.+++++|++.  +.+++.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~~--g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY-EVDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS-TTSSCCCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHH-cCCCcccc-cccccccccccccccccccccccccc--ccccccccccCcccccccchhh
Confidence            67999999999999999988 58889987 89999999999999999999999999  8999999999999999999999


Q ss_pred             CHHHHHHHHhcCccccccCC-CCCCcHHHHH--HHcCChHHHHHHHhcc
Q 037778           87 MVELAREIMTHNKAIATEQD-DKRVLPIDLA--ASLGHEDMVVYLYGQT  132 (575)
Q Consensus        87 ~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A--~~~g~~~~v~~Ll~~~  132 (575)
                      +.+++++|+++|+++ +..+ ..|.||++++  +..|+.+++++|++..
T Consensus        79 ~~~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          79 NVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999997 5444 4688887765  5678999999998753

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.5e-22  Score=168.15  Aligned_cols=119  Identities=19%  Similarity=0.118  Sum_probs=110.9

Q ss_pred             CChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCC-cHHHHHHH
Q 037778           40 KDTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRV-LPIDLAAS  118 (575)
Q Consensus        40 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~  118 (575)
                      +.++||+|++.|+.++|++|+++  |.+++.+|.+|.||||.|+ .|+.+++++|+++|+++ +.++..|. ||||+|++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~--gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHc--CCccccccccccccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            56899999999999999999998  8999999999999999775 79999999999999997 77777765 69999999


Q ss_pred             cCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHH
Q 037778          119 LGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFE  162 (575)
Q Consensus       119 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  162 (575)
                      .|+.+++++|++.++ .+..|.+|.||||+|++.|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999998 88899999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=8.5e-23  Score=170.70  Aligned_cols=105  Identities=21%  Similarity=0.270  Sum_probs=97.0

Q ss_pred             ChHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcC
Q 037778           41 DTALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLG  120 (575)
Q Consensus        41 ~TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  120 (575)
                      +|||++|++.|+.++|++|+++  |.+++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~--g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT--TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh--hhcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcC
Confidence            5899999999999999999998  8999999999999999999999999999999999997 899999999999999999


Q ss_pred             ChHHHHHHHhccc-cccCcCchhhHHHHH
Q 037778          121 HEDMVVYLYGQTK-NSLNDEDRSHLLVTL  148 (575)
Q Consensus       121 ~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a  148 (575)
                      +.+++++|+++|+ .+..|.+|.||||+|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            9999999999887 666777777777666

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=6.1e-21  Score=166.70  Aligned_cols=123  Identities=24%  Similarity=0.273  Sum_probs=110.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCccccc-----CCCCCChHHhHHHHc---CCHHHHHHHHHcCCCCCccccccCCChH
Q 037778            7 LKLYRAALTGDWAVARGIYDVHEGEIRAP-----ISKRKDTALHIAAAA---KQYGFVKELVQRMEPGDLAQENNVGYTA   78 (575)
Q Consensus         7 t~L~~Aa~~g~~~~v~~lL~~~~~~~~~~-----~~~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~l~~~d~~g~Tp   78 (575)
                      ..|+.|++.++...+..++.+ +.+++..     .+..|+||||+|++.   |+.++|++|+++  |++++.+|.+|+||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~Tp   84 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhccc
Confidence            456789999999999998875 4444432     257799999999985   678999999999  89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCChHHHHHHHhccc
Q 037778           79 LFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGHEDMVVYLYGQTK  133 (575)
Q Consensus        79 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  133 (575)
                      ||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.|+.+++++|++.++
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999999997 9999999999999999999999999999776

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.3e-21  Score=163.16  Aligned_cols=119  Identities=15%  Similarity=0.177  Sum_probs=108.5

Q ss_pred             hHHhHHHHcCCHHHHHHHHHcCCCCCccccccCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCcHHHHHHHcCC
Q 037778           42 TALHIAAAAKQYGFVKELVQRMEPGDLAQENNVGYTALFFAAASGMVELAREIMTHNKAIATEQDDKRVLPIDLAASLGH  121 (575)
Q Consensus        42 TpLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  121 (575)
                      ++||.|+..|+.++|+.|+++  |.+++.+|.+|+||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+.+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~--g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHc--CCCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence            689999999999999999999  8999999999999999999999999999999999997 9999999999999999999


Q ss_pred             hHHHHHHHhccc-cccC-cCchhhHHHHH--HHhCcHHHHHHHHHh
Q 037778          122 EDMVVYLYGQTK-NSLN-DEDRSHLLVTL--IQTDLYDVALRVFED  163 (575)
Q Consensus       122 ~~~v~~Ll~~~~-~~~~-~~~g~t~L~~a--~~~~~~~~~~~Ll~~  163 (575)
                      .+++++|+++++ .+.. ..++.|+++.+  ...|+.+++++|+..
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999998 5543 45677777665  567889999999876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.6e-18  Score=151.09  Aligned_cols=118  Identities=12%  Similarity=0.069  Sum_probs=107.4

Q ss_pred             HHhHHHHcCCHHHHHHHHHcCCCCCcccc------ccCCChHHHHHHHc---CCHHHHHHHHhcCccccccCCCCCCcHH
Q 037778           43 ALHIAAAAKQYGFVKELVQRMEPGDLAQE------NNVGYTALFFAAAS---GMVELAREIMTHNKAIATEQDDKRVLPI  113 (575)
Q Consensus        43 pLh~Aa~~g~~~~v~~Ll~~~~~~~l~~~------d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  113 (575)
                      .|..|++.++.+.+..++..  |.+++.+      +..|+||||+|++.   |+.+++++|+++|+++ +.+|..|.|||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpL   85 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHc--CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccc
Confidence            45688899999999999987  6665544      77899999999975   6889999999999997 99999999999


Q ss_pred             HHHHHcCChHHHHHHHhccc-cccCcCchhhHHHHHHHhCcHHHHHHHHHh
Q 037778          114 DLAASLGHEDMVVYLYGQTK-NSLNDEDRSHLLVTLIQTDLYDVALRVFED  163 (575)
Q Consensus       114 ~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  163 (575)
                      |+|+..|+.+++++|+++++ .+..|.+|.||||+|++.++.++++.|++.
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999 888999999999999999999999999987