Citrus Sinensis ID: 037791

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MTSFASSACSLNPNAQPFKPQPKQPFSETFIIPHAPVMTCHRRLSCKPKCFYQPKPPVWCSHSANVVPPYNNDNVKAKVAVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKPIIVGKRFDVAAAPPLYFDRKFRSKSKSKSKPKLTRRKFKGLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccEEEEEEEcccHHHHHHHHHHHHcccccccccccccEEEEEEEccccHHHHHHHHccccccccccccccEEEccccccccccccEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccEEEEEEEcccHHHHHHHHHHHcccccEEccccccHEEEEEEEEEccHHHHHHHHccccccccccccccEEEcccccccccccccccccccccccccccccccccccccHHccccccccccccccc
Coil and Loop (DISEMBL)
mtsfassacslnpnaqpfkpqpkqpfsetfiiphapvmtchrrlsckpkcfyqpkppvwcshsanvvppynndnvkakvavtrpltmrgkvvghkrnlkwapknrddvygamlgENTTLMIRNipnnlkrrdLLHILDSHCRVEylkskwhcksefdflylpmdfrrraNLGYAFVNFTTAAGALRFWKACNKYKweveapgnkkMCEIACADIQGRDALEKHFERFKfychtdgylpvilspprdgwnyskpiivgkrfdvaaapplyfdrkfrskskskskpkltrrkfkgls
Flexible Loop (DISEMBL)
MTSFASSACSLNPNAQPFKPQPKQPFSETFIIPHAPVMTCHRRLSCKPKCFYQPKPPVWCSHSANVVPPYNNDNVKAKVAvtrpltmrgkvvghkrnlkwapknrddvyGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKPIIVGKRfdvaaapplyfdrkfrskskskskpkltrrkfkgls
Low Complexity Region (SEG)
MTSFASSACSLNPNAqpfkpqpkqpfSETFIIPHAPVMTCHRRLSCKPKCFYQPKPPVWCSHSANVVPPYNNDNVKAKVAVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKPIIVGKRFDVAAAPPLYFDrkfrskskskskpkltrrkFKGLS
Disordered region (IsUnstruct)
***************************ETFIIPHAPVMTCHRRLSCKPKCFYQPKPPVWCSHSANVVPPYNNDNVKAKVAVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKPIIVGKRFDVAAAPPLYFDR***********************
Disordered Region (DISOPRED)
**************************************************************************************************************AMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPR**************************************************
Disordered Region (DISEMBL)
**********LNPNAQPFKPQPKQPFSETFIIPHAPVMTCHRRLSCKPKCFYQPKPPVWCSHSANVVPPYNNDNVKAKVAVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKPIIVGKRFDVAAAPPLYFDRKF*********************
Disordered Region (DISPRO)
********CSLNPNAQPFKPQPKQPFSETFIIPHAPVMTCHRRLSCKPKCFYQPKPPVWCS**ANV************************************KNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKPIIVGKRFDVAAAPPLYFD************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSFASSACSLNPNAQPFKPQPKQPFSETFIIPHAPVMTCHRRLSCKPKCFYQPKPPVWCSHSANVVPPYNNDNVKAKVAVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKPIIVGKRFDVAAAPPLYFDRKFRSKSKSKSKPKLTRRKFKGLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
A2WY46	680	Protein terminal ear1 hom	N/A	no	0.474	0.205	0.449	4e-32
Q0JGS5	683	Protein terminal ear1 hom	yes	no	0.474	0.204	0.449	4e-32
O65001	656	Protein terminal ear1 OS=	N/A	no	0.474	0.213	0.435	1e-28
Q6ET49	389	Protein MEI2-like 7 OS=Or	no	no	0.447	0.339	0.442	3e-27
Q652K6	323	Protein MEI2-like 6 OS=Or	no	no	0.471	0.430	0.424	8e-26
Q8W4I9	915	Protein MEI2-like 1 OS=Ar	no	no	0.359	0.115	0.404	6e-16
Q9LYN7	907	Protein MEI2-like 4 OS=Ar	no	no	0.359	0.116	0.396	2e-15
Q75M35	955	Protein MEI2-like 3 OS=Or	no	no	0.325	0.100	0.412	4e-15
Q6ZI17	848	Protein MEI2-like 2 OS=Or	no	no	0.325	0.113	0.403	8e-15
Q9SVV9	759	Protein MEI2-like 3 OS=Ar	no	no	0.447	0.173	0.344	2e-14

>sp|A2WY46|EAR1_ORYSI Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 9/149 (6%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE------FDFLYLPMDFRRRAN 170
           TT+MIRNIPN   ++ LL++LD+HC +   + +  C+ E      +DFLYLP+DF  + N
Sbjct: 455 TTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNNKCN 514

Query: 171 LGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFY 230
           +GY FVN T+   A+R +KA +K  WEV    ++K+C++  A +QG DAL++HF+  KF 
Sbjct: 515 VGYGFVNLTSPEAAVRLYKAFHKQPWEVF--NSRKICQVTYARVQGLDALKEHFKNSKFP 572

Query: 231 CHTDGYLPVILSPPRDGWNYSKPI-IVGK 258
           C +D YLPV+ SPPRDG   ++P+ +VG+
Sbjct: 573 CDSDEYLPVVFSPPRDGKLLTEPVPLVGR 601

Probable RNA-binding protein. Involved in the regular timing (plastochron) of lateral organs formation. May regulate the rate of leaf initiation and the duration of vegetative phase. Seems to be redundant to the function of PLASTOCHRON1, but to act in an independent pathway.
Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JGS5|EAR1_ORYSJ Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica GN=PLA2 PE=2 SV=1

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 9/149 (6%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE------FDFLYLPMDFRRRAN 170
           TT+MIRNIPN   ++ LL++LD+HC +   + +  C+ E      +DFLYLP+DF  + N
Sbjct: 458 TTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNNKCN 517

Query: 171 LGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFY 230
           +GY FVN T+   A+R +KA +K  WEV    ++K+C++  A +QG DAL++HF+  KF 
Sbjct: 518 VGYGFVNLTSPEAAVRLYKAFHKQPWEVF--NSRKICQVTYARVQGLDALKEHFKNSKFP 575

Query: 231 CHTDGYLPVILSPPRDGWNYSKPI-IVGK 258
           C +D YLPV+ SPPRDG   ++P+ +VG+
Sbjct: 576 CDSDEYLPVVFSPPRDGKLLTEPVPLVGR 604

Probable RNA-binding protein. Involved in the regular timing (plastochron) of lateral organs formation. May regulate the rate of leaf initiation and the duration of vegetative phase. Seems to be redundant to the function of PLASTOCHRON1, but to act in an independent pathway.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O65001|TE1_MAIZE Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 97/147 (65%), Gaps = 7/147 (4%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHC--RVEYLKSKWHCK--SEFDFLYLPMDFRRRANLG 172
           TT+MIRNIPN   ++ LL++LD+HC    E++ +    +  S +DF+YLP+DF  + N+G
Sbjct: 441 TTVMIRNIPNKYSQKLLLNMLDNHCIQSNEWIVASGEEQPFSAYDFVYLPIDFNNKCNVG 500

Query: 173 YAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCH 232
           Y FVN T+    +R +KA +K  WEV    ++K+C++  A +QG +AL++HF+  KF C 
Sbjct: 501 YGFVNLTSPEARVRLYKAFHKQPWEVY--NSRKICQVTYARVQGLEALKEHFKNSKFPCD 558

Query: 233 TDGYLPVILSPPRDGWNYSKPI-IVGK 258
           +D YLPV  SP RDG   + P+ IVG+
Sbjct: 559 SDEYLPVAFSPARDGKELTDPVPIVGR 585

Probable RNA-binding protein. Involved in the regulation of leaf initiation rate and shoot development. Seems to act more predominantly in the early stages of the leaf development, rather than in the later phase.

Zea mays (taxid: 4577)

>sp|Q6ET49|OML7_ORYSJ Protein MEI2-like 7 OS=Oryza sativa subsp. japonica GN=OML7 PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 8/140 (5%)

Query: 116 NTTLMIRNIPNNLKRRDLLHILDSHC--RVEYLKSKWHCKSEFDFLYLPMDF-----RRR 168
           +TT+M+RNIPN L R D++ +LD HC             ++E+D +Y+ MDF      R 
Sbjct: 215 HTTVMVRNIPNKLTRSDMVRLLDDHCARENRRRGRGGEPRAEYDLVYVRMDFGMCNKERS 274

Query: 169 ANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFK 228
           +N+GYAFVNFTTA  A    +A +  +W+  A  + K+ +I  A IQG+DAL +HF R  
Sbjct: 275 SNMGYAFVNFTTAEAARGLQRALHGCRWKRSAFDSGKIIDIRAARIQGKDALVRHFGRTT 334

Query: 229 FY-CHTDGYLPVILSPPRDG 247
           +Y C TD YLP + SPPRDG
Sbjct: 335 YYECDTDEYLPAVFSPPRDG 354

Probable RNA-binding protein that may play a role in growth regulation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652K6|OML6_ORYSJ Protein MEI2-like 6 OS=Oryza sativa subsp. japonica GN=ML6 PE=2 SV=1

 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 82/153 (53%), Gaps = 14/153 (9%)

Query: 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWH----------CKSEFDFLYLPMDF 165
            T+LMIRNIPN   +  L+ ILD HC  E    K H           KSE+DF Y+P+DF
Sbjct: 169 TTSLMIRNIPNKFLKARLMAILDQHCADE--NGKCHRRGGGGGRSVVKSEYDFFYVPIDF 226

Query: 166 RRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFE 225
           +   N GYAFVN TTA  A R       ++W+    G  K+C++  A IQG DA   HF 
Sbjct: 227 KTGFNKGYAFVNMTTATAARRLRAFLQDHRWDAAMSG--KVCDVVPAAIQGLDAFVAHFS 284

Query: 226 RFKFYCHTDGYLPVILSPPRDGWNYSKPIIVGK 258
              F C T  +LPV   PPRDG   +K  +VG+
Sbjct: 285 ASCFPCRTKEFLPVWFEPPRDGEQQTKAHVVGR 317

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8W4I9|AML1_ARATH Protein MEI2-like 1 OS=Arabidopsis thaliana GN=ML1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 15/121 (12%)

Query: 107 DVYGAMLGEN--TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD 164
           DV   + GE+  TTLMI+NIPN    + LL  +D HC           K  +DFLYLP+D
Sbjct: 732 DVDRILRGEDRRTTLMIKNIPNKYTSKMLLSAIDEHC-----------KGTYDFLYLPID 780

Query: 165 FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
           F+ + N+GYAF+N       + F+KA N  KW  E   ++K+  +  A IQG+ AL  HF
Sbjct: 781 FKNKCNVGYAFINLIEPEKIVPFFKAFNGKKW--EKFNSEKVATLTYARIQGKTALIAHF 838

Query: 225 E 225
           +
Sbjct: 839 Q 839

Probable RNA-binding transcriptional activator that plays a role in meiosis and vegetative growth. May be a downstream effector of TOR signaling pathway and recruited by RAPTOR1 for TOR substrate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 15/121 (12%)

Query: 107 DVYGAMLGEN--TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD 164
           DV   + GE+  TTLMI+NIPN    + LL  +D +C           K  +DFLYLP+D
Sbjct: 730 DVDRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEYC-----------KGTYDFLYLPID 778

Query: 165 FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
           F+ + N+GYAF+N       + F+KA N  KW  E   ++K+  +A   IQG+ AL  HF
Sbjct: 779 FKNKCNVGYAFINLIEPENIVPFYKAFNGKKW--EKFNSEKVASLAYGRIQGKSALIAHF 836

Query: 225 E 225
           +
Sbjct: 837 Q 837

Probable RNA-binding protein that plays a role in meiosis and vegetative growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75M35|OML3_ORYSJ Protein MEI2-like 3 OS=Oryza sativa subsp. japonica GN=ML3 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 13/109 (11%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFV 176
           TTLMI+NIPN    + LL ++D + R  Y           DF+YLP+DF+ + N+GYAF+
Sbjct: 780 TTLMIKNIPNKYNCKLLLAVIDENHRGTY-----------DFIYLPIDFKNKCNVGYAFI 828

Query: 177 NFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFE 225
           N T     + F+K  N  KW  E   ++K+  +A A IQGR AL  HF+
Sbjct: 829 NMTDPQHIIPFYKTFNGKKW--EKFNSEKVASLAYARIQGRSALIAHFQ 875

Probable RNA-binding protein that may play a role in growth regulation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 13/109 (11%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFV 176
           TTLMI+NIPN    + LL  +D          ++H K  +DF YLP+DF+ + N+GYAF+
Sbjct: 685 TTLMIKNIPNKYTSKMLLAAID----------EFH-KGTYDFFYLPIDFKNKCNVGYAFI 733

Query: 177 NFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFE 225
           N  +    + F++A N  KW  E   ++K+  +A A IQGR AL  HF+
Sbjct: 734 NMISPVHIVSFYQAFNGKKW--EKFNSEKVASLAYARIQGRTALISHFQ 780

Probable RNA-binding protein that may play a role in growth regulation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 19/151 (12%)

Query: 107 DVYGAMLGEN--TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD 164
           D+   M GE+  TTLMI+NIPN   R  LL  +D      Y           DFLYLP+D
Sbjct: 601 DLSKIMRGEDPRTTLMIKNIPNKYTRNMLLAAIDEKNSGTY-----------DFLYLPID 649

Query: 165 FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
           F+ + N+GYAF+N  +    +  ++A N  KW  +   ++K+  +A A IQG+ AL  HF
Sbjct: 650 FKNKCNVGYAFINMVSPKFTIALYEAFNGKKW--DKFNSEKVASLAYARIQGKAALIAHF 707

Query: 225 ERFKFYCHTDGYLPVILSPPRDGWNYSKPII 255
           +            P++     DG     PII
Sbjct: 708 QNSSLMNEDRRCQPIVF----DGSESKYPII 734

Probable RNA-binding protein that plays a role in meiosis and vegetative growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
224063148	426	predicted protein [Populus trichocarpa]	0.603	0.417	0.497	9e-45
255545526	407	hypothetical protein RCOM_1032650 [Ricin	0.488	0.353	0.597	2e-42
359492412	349	PREDICTED: protein terminal ear1-like [V	0.491	0.415	0.519	7e-34
297852088	243	predicted protein [Arabidopsis lyrata su	0.471	0.572	0.480	2e-32
302141872	350	unnamed protein product [Vitis vinifera]	0.491	0.414	0.516	2e-32
91805921	207	RNA-binding protein [Arabidopsis thalian	0.494	0.705	0.477	4e-32
15221317	233	MEI2 C-terminal RRM only like 1 protein	0.494	0.626	0.477	4e-32
255543823	312	hypothetical protein RCOM_1449530 [Ricin	0.488	0.461	0.5	9e-32
242049940	405	hypothetical protein SORBIDRAFT_02g03079	0.444	0.323	0.507	8e-31
158512875	680	RecName: Full=Protein terminal ear1 homo	0.474	0.205	0.449	2e-30

>gi|224063148|ref|XP_002301014.1| predicted protein [Populus trichocarpa] gi|222842740|gb|EEE80287.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/211 (49%), Positives = 124/211 (58%), Gaps = 33/211 (15%)

Query: 100 WAPKNRDDVYGAMLGEN------------------------TTLMIRNIPNNLKRRDLLH 135
           W PK    +YG   G++                        TTLMI+NIPN L R DLL 
Sbjct: 192 WVPKTESKLYGESSGDDQGLSVKEEDGVLSCSTDEVFLAGKTTLMIKNIPNQLGRHDLLR 251

Query: 136 ILDSHCRVEYLKSKWH---CKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN 192
           ILD HC  E  K+       KSEFDF YLPMDF RRANLGYAFVNFT AAGALRF KA N
Sbjct: 252 ILDVHCLGENQKAMQRFDRVKSEFDFFYLPMDFVRRANLGYAFVNFTNAAGALRFRKAFN 311

Query: 193 KYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSK 252
           KYKW+V A  N+K CE++ A IQG+DAL   ++   F CHT+ YLPV+L P RDGW  + 
Sbjct: 312 KYKWDVGA--NRKTCEVSLATIQGKDALCNRYKNSVFPCHTNAYLPVVLLPARDGWRQTA 369

Query: 253 PIIVGKRFDVAAAPPLYFDRKFRSKSKSKSK 283
           P IVG+R D    P    +R   S+ KS +K
Sbjct: 370 PSIVGRRVD----PAFPLERGCFSRRKSLNK 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545526|ref|XP_002513823.1| hypothetical protein RCOM_1032650 [Ricinus communis] gi|223546909|gb|EEF48406.1| hypothetical protein RCOM_1032650 [Ricinus communis]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/149 (59%), Positives = 107/149 (71%), Gaps = 5/149 (3%)

Query: 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWH---CKSEFDFLYLPMDFRRRA 169
           L ENT+LMIRNIPN  +R  L+ ILD HC+ E  K++      KSE+DFLYLPMDF+ RA
Sbjct: 251 LEENTSLMIRNIPNQFERNKLMDILDRHCQEENEKAELRSDPIKSEYDFLYLPMDFKSRA 310

Query: 170 NLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKF 229
           N GYAFVNFT +AGA RF K   K+KW+V    NKK CEI CA IQG++AL  HF+   F
Sbjct: 311 NFGYAFVNFTNSAGAARFAKRFQKHKWDVML--NKKTCEICCAKIQGKNALRNHFKNSVF 368

Query: 230 YCHTDGYLPVILSPPRDGWNYSKPIIVGK 258
            CHT+GYLPV+ SPPR G   S+PI+VGK
Sbjct: 369 PCHTNGYLPVVFSPPRGGPVSSEPIVVGK 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492412|ref|XP_003634410.1| PREDICTED: protein terminal ear1-like [Vitis vinifera]

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 98/152 (64%), Gaps = 7/152 (4%)

Query: 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS---EFDFLYLPMDFRRR- 168
           L   TT+MIRNIPN + R+D+L +LD  C+VE   ++  C S   E+DF+YLPMDFR + 
Sbjct: 190 LSGKTTVMIRNIPNKMSRKDMLQLLDECCQVENRNAELRCDSLRTEYDFVYLPMDFRFKC 249

Query: 169 ANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFK 228
           +N GYAFVNFTT   A R  K  +   W   A G KK+CEI  A IQG++AL  HF    
Sbjct: 250 SNKGYAFVNFTTDVAAFRICKYLHNTTWA--AYGTKKICEITGARIQGKEALVGHFRNSN 307

Query: 229 FYCHTDGYLPVILSPPRDGWN-YSKPIIVGKR 259
           F C TD YLPV+LSPPRDG    + P IVG+R
Sbjct: 308 FECSTDDYLPVVLSPPRDGMTAITTPRIVGRR 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852088|ref|XP_002893925.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297339767|gb|EFH70184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 97/154 (62%), Gaps = 15/154 (9%)

Query: 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLG 172
           L   T++M++NIPN L R DLL ILD+HCR      K   +S +DFLYLPMDF +RANLG
Sbjct: 93  LAGKTSVMVKNIPNCLGRTDLLMILDNHCR------KHKTESSYDFLYLPMDFVKRANLG 146

Query: 173 YAFVNFTTAAGALRFWKACNKYKWEVEAPGN----KKMCEIACADIQGRDALEKHFERFK 228
           YAFVNFT++  A RF +    + W     GN    KK+CEI  A  QG++ L +HF+  +
Sbjct: 147 YAFVNFTSSVAAERFRREFENFSW-----GNLGYRKKICEITVAKYQGKEELSQHFKNSR 201

Query: 229 FYCHTDGYLPVILSPPRDGWNYSKPIIVGKRFDV 262
           F CHTD YLPV+LSPP +G+       +G R  +
Sbjct: 202 FTCHTDEYLPVVLSPPSNGFTAYTFTTLGDRVSL 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141872|emb|CBI19075.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 98/153 (64%), Gaps = 8/153 (5%)

Query: 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS---EFDFLYLPMDFRRR- 168
           L   TT+MIRNIPN + R+D+L +LD  C+VE   ++  C S   E+DF+YLPMDFR + 
Sbjct: 190 LSGKTTVMIRNIPNKMSRKDMLQLLDECCQVENRNAELRCDSLRTEYDFVYLPMDFRFKC 249

Query: 169 ANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQ-GRDALEKHFERF 227
           +N GYAFVNFTT   A R  K  +   W   A G KK+CEI  A IQ G++AL  HF   
Sbjct: 250 SNKGYAFVNFTTDVAAFRICKYLHNTTWA--AYGTKKICEITGARIQQGKEALVGHFRNS 307

Query: 228 KFYCHTDGYLPVILSPPRDGWN-YSKPIIVGKR 259
            F C TD YLPV+LSPPRDG    + P IVG+R
Sbjct: 308 NFECSTDDYLPVVLSPPRDGMTAITTPRIVGRR 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91805921|gb|ABE65689.1| RNA-binding protein [Arabidopsis thaliana]

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 95/153 (62%), Gaps = 7/153 (4%)

Query: 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLG 172
           L   T++M++NIPN L R DLL ILD+HCR      K + KS +DFLYLPMDF +RANLG
Sbjct: 54  LAGRTSVMVKNIPNCLGRMDLLRILDNHCR------KHNEKSSYDFLYLPMDFGKRANLG 107

Query: 173 YAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCH 232
           YAFVNFT++  A RF +    + W+      KK+CEI  A  QG++ L +HF   +F CH
Sbjct: 108 YAFVNFTSSLAAERFRREFENFSWD-NIGFRKKICEITVAKYQGKEELTRHFRNSRFTCH 166

Query: 233 TDGYLPVILSPPRDGWNYSKPIIVGKRFDVAAA 265
           TD YLPV+LSPP +G+       +G R      
Sbjct: 167 TDDYLPVVLSPPSNGFTAYTLTKLGYRVGALGG 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221317|ref|NP_174902.1| MEI2 C-terminal RRM only like 1 protein [Arabidopsis thaliana] gi|67633426|gb|AAY78638.1| putative RNA-binding protein [Arabidopsis thaliana] gi|332193771|gb|AEE31892.1| MEI2 C-terminal RRM only like 1 protein [Arabidopsis thaliana]

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 95/153 (62%), Gaps = 7/153 (4%)

Query: 113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLG 172
           L   T++M++NIPN L R DLL ILD+HCR      K + KS +DFLYLPMDF +RANLG
Sbjct: 80  LAGRTSVMVKNIPNCLGRMDLLRILDNHCR------KHNEKSSYDFLYLPMDFGKRANLG 133

Query: 173 YAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCH 232
           YAFVNFT++  A RF +    + W+      KK+CEI  A  QG++ L +HF   +F CH
Sbjct: 134 YAFVNFTSSLAAERFRREFENFSWD-NIGFRKKICEITVAKYQGKEELTRHFRNSRFTCH 192

Query: 233 TDGYLPVILSPPRDGWNYSKPIIVGKRFDVAAA 265
           TD YLPV+LSPP +G+       +G R      
Sbjct: 193 TDDYLPVVLSPPSNGFTAYTLTKLGYRVGALGG 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543823|ref|XP_002512974.1| hypothetical protein RCOM_1449530 [Ricinus communis] gi|223547985|gb|EEF49477.1| hypothetical protein RCOM_1449530 [Ricinus communis]

 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 94/150 (62%), Gaps = 6/150 (4%)

Query: 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE---FDFLYLPMDFRRRANL 171
           ENTT+MIRNIPN   R  L+  LD HC +E  K+K    +E   FDFLYLPMDF ++AN 
Sbjct: 164 ENTTVMIRNIPNRYTRELLMEFLDYHCMLENEKAKESHNNETSAFDFLYLPMDFEKKANK 223

Query: 172 GYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYC 231
           GYAFVNFT    A +F  A +   W +   G  K CEIA A +QG++ L +HF+   F C
Sbjct: 224 GYAFVNFTEPRAAWKFHLAMDNQGWSLFQSG--KTCEIASARLQGKEELIRHFQSSTFKC 281

Query: 232 HTDGYLPVILSPPRDGWNYS-KPIIVGKRF 260
            TD YLPV  SPPRDG   + K +I+G+R 
Sbjct: 282 ETDSYLPVCFSPPRDGSKATVKQMIIGRRI 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242049940|ref|XP_002462714.1| hypothetical protein SORBIDRAFT_02g030790 [Sorghum bicolor] gi|241926091|gb|EER99235.1| hypothetical protein SORBIDRAFT_02g030790 [Sorghum bicolor]

 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 86/134 (64%), Gaps = 3/134 (2%)

Query: 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLK-SKWHCKSEFDFLYLPMDFRRRANLGY 173
           E T+LMIRNIPN+  R  L++ILD HC +E  K      +SE+DFLYLP+DFR  AN GY
Sbjct: 246 ERTSLMIRNIPNDFTRMRLMNILDEHCFIENEKIEPGGVRSEYDFLYLPIDFRTLANKGY 305

Query: 174 AFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHT 233
           AFVN T+   A R W   ++++W  +  G  K C +  AD QGRD L +HF   +F CHT
Sbjct: 306 AFVNMTSPEAARRLWADLDRHRWAFKRSG--KTCAVDYADRQGRDPLVEHFSGSRFDCHT 363

Query: 234 DGYLPVILSPPRDG 247
           + YLPV   PPRDG
Sbjct: 364 EEYLPVRFEPPRDG 377

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158512875|sp|A2WY46.1|PLA2_ORYSI RecName: Full=Protein terminal ear1 homolog; AltName: Full=Protein LEAFY HEAD2; AltName: Full=Protein PLASTOCHRON2 gi|88703264|gb|ABD49441.1| leafy head 2 [Oryza sativa] gi|125528778|gb|EAY76892.1| hypothetical protein OsI_04851 [Oryza sativa Indica Group]

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 9/149 (6%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE------FDFLYLPMDFRRRAN 170
           TT+MIRNIPN   ++ LL++LD+HC +   + +  C+ E      +DFLYLP+DF  + N
Sbjct: 455 TTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNNKCN 514

Query: 171 LGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFY 230
           +GY FVN T+   A+R +KA +K  WEV    ++K+C++  A +QG DAL++HF+  KF 
Sbjct: 515 VGYGFVNLTSPEAAVRLYKAFHKQPWEVF--NSRKICQVTYARVQGLDALKEHFKNSKFP 572

Query: 231 CHTDGYLPVILSPPRDGWNYSKPI-IVGK 258
           C +D YLPV+ SPPRDG   ++P+ +VG+
Sbjct: 573 CDSDEYLPVVFSPPRDGKLLTEPVPLVGR 601

Source: Oryza sativa

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2029647	233	MCT1 "AT1G37140" [Arabidopsis	0.437	0.553	0.522	4.1e-33
TAIR|locus:2090350	615	TEL1 "terminal EAR1-like 1" [A	0.467	0.224	0.436	8.1e-28
TAIR|locus:2008530	527	TEL2 "terminal EAR1-like 2" [A	0.654	0.366	0.321	1.2e-23
TAIR|locus:2182885	907	ML4 "MEI2-like 4" [Arabidopsis	0.359	0.116	0.413	1.6e-15
TAIR|locus:2156166	915	ML1 "MEI2-like protein 1" [Ara	0.359	0.115	0.404	2.1e-15
TAIR|locus:2117706	759	ML3 "MEI2-like 3" [Arabidopsis	0.447	0.173	0.344	1.9e-12
TAIR|locus:2013583	800	ML5 "MEI2-like protein 5" [Ara	0.430	0.158	0.338	7.9e-12
GENEDB_PFALCIPARUM|PFF1125c	427	PFF1125c "RNA-binding protein	0.322	0.222	0.361	4.5e-10
UNIPROTKB|C6KT70	427	PFF1125c "RNA-binding protein	0.322	0.222	0.361	4.5e-10
POMBASE|SPAC27D7.03c	750	mei2 "RNA-binding protein invo	0.366	0.144	0.362	1.2e-09

TAIR|locus:2029647 MCT1 "AT1G37140" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 71/136 (52%), Positives = 92/136 (67%)

Query:   113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLG 172
             L   T++M++NIPN L R DLL ILD+HCR      K + KS +DFLYLPMDF +RANLG
Sbjct:    80 LAGRTSVMVKNIPNCLGRMDLLRILDNHCR------KHNEKSSYDFLYLPMDFGKRANLG 133

Query:   173 YAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCH 232
             YAFVNFT++  A RF +    + W+      KK+CEI  A  QG++ L +HF   +F CH
Sbjct:   134 YAFVNFTSSLAAERFRREFENFSWD-NIGFRKKICEITVAKYQGKEELTRHFRNSRFTCH 192

Query:   233 TDGYLPVILSPPRDGW 248
             TD YLPV+LSPP +G+
Sbjct:   193 TDDYLPVVLSPPSNGF 208

GO:0003723 "RNA binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090350 TEL1 "terminal EAR1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 8.1e-28, P = 8.1e-28
 Identities = 65/149 (43%), Positives = 94/149 (63%)

Query:   117 TTLMIRNIPNNLKRRDLLHILDSHC-------RVEYLKSKWHCK--SEFDFLYLPMDFRR 167
             TTLMI+NIPN   ++ LL +LD HC         E+ K + H +  S +DF+YLPMDF  
Sbjct:   408 TTLMIKNIPNKYSQKLLLDMLDKHCIHINEAITEEHNKHESHHQPYSSYDFVYLPMDFNN 467

Query:   168 RANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERF 227
             + N+GY FVN T+   A RF+KA +  +WEV    + K+C+I  A +QG + L++HF+  
Sbjct:   468 KCNVGYGFVNMTSPEAAWRFYKAFHGQRWEVF--NSHKICQITYARVQGLEDLKEHFKSS 525

Query:   228 KFYCHTDGYLPVILSPPRDGWNYSKPIIV 256
             KF C  + YLPV+ SPPRDG   ++P+ +
Sbjct:   526 KFPCEAELYLPVVFSPPRDGKQLTEPVSI 554

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2008530 TEL2 "terminal EAR1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 65/202 (32%), Positives = 109/202 (53%)

Query:    68 PPYNNDNVKAKVAVTRPLTMRGKVVGHKRNL--KWAPKNRDDVYGAMLGEN-TTLMIRNI 124
             PP  +  VK+ + + +    + K    K+NL   +   N + + G    +  TT+MI+NI
Sbjct:   285 PPPPSRMVKSDILMYKQQQKKKKKKYVKKNLGDPYFMINENAITGGEFRDGRTTVMIKNI 344

Query:   125 PNNLKRRDLLHILDSHCR---VEYLKSKWHCK-SEFDFLYLPMDFRRRANLGYAFVNFTT 180
             PN   ++ LL +LD+HC+      +K       S +DF+YLP+DF  ++N+GY FVN T+
Sbjct:   345 PNKYTQKLLLKMLDTHCKDCNQSVIKEGNKTPMSSYDFVYLPIDFSNKSNVGYGFVNMTS 404

Query:   181 AAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFY-CHTDGYLPV 239
                  R +K+ +   W  +    +K+CE+  A IQG ++L +HF+  +      D Y+PV
Sbjct:   405 PEAVWRLYKSFHNQHWR-DFTTTRKICEVTYARIQGLESLREHFKNVRLAGVEIDEYMPV 463

Query:   240 ILSPPRDGWNYSKPIIVGKRFD 261
             + SPPRDG    +P+ +   +D
Sbjct:   464 VFSPPRDGRLSPEPVAIVDPWD 485

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2182885 ML4 "MEI2-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 50/121 (41%), Positives = 69/121 (57%)

Query:   107 DVYGAMLGEN--TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD 164
             DV   + GE+  TTLMI+NIPN    + LL  +D     EY      CK  +DFLYLP+D
Sbjct:   730 DVDRILRGEDSRTTLMIKNIPNKYTSKMLLAAID-----EY------CKGTYDFLYLPID 778

Query:   165 FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
             F+ + N+GYAF+N       + F+KA N  KWE     ++K+  +A   IQG+ AL  HF
Sbjct:   779 FKNKCNVGYAFINLIEPENIVPFYKAFNGKKWEKF--NSEKVASLAYGRIQGKSALIAHF 836

Query:   225 E 225
             +
Sbjct:   837 Q 837

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0045836 "positive regulation of meiosis" evidence=IMP

GO:0045927 "positive regulation of growth" evidence=IMP

GO:0048507 "meristem development" evidence=IGI

TAIR|locus:2156166 ML1 "MEI2-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 49/121 (40%), Positives = 68/121 (56%)

Query:   107 DVYGAMLGEN--TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD 164
             DV   + GE+  TTLMI+NIPN    + LL  +D HC           K  +DFLYLP+D
Sbjct:   732 DVDRILRGEDRRTTLMIKNIPNKYTSKMLLSAIDEHC-----------KGTYDFLYLPID 780

Query:   165 FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
             F+ + N+GYAF+N       + F+KA N  KWE     ++K+  +  A IQG+ AL  HF
Sbjct:   781 FKNKCNVGYAFINLIEPEKIVPFFKAFNGKKWEKF--NSEKVATLTYARIQGKTALIAHF 838

Query:   225 E 225
             +
Sbjct:   839 Q 839

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0048507 "meristem development" evidence=IGI

GO:0045836 "positive regulation of meiosis" evidence=IGI

TAIR|locus:2117706 ML3 "MEI2-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 52/151 (34%), Positives = 76/151 (50%)

Query:   107 DVYGAMLGEN--TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD 164
             D+   M GE+  TTLMI+NIPN   R  LL  +D        K+       +DFLYLP+D
Sbjct:   601 DLSKIMRGEDPRTTLMIKNIPNKYTRNMLLAAIDE-------KNS----GTYDFLYLPID 649

Query:   165 FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
             F+ + N+GYAF+N  +    +  ++A N  KW+     ++K+  +A A IQG+ AL  HF
Sbjct:   650 FKNKCNVGYAFINMVSPKFTIALYEAFNGKKWDKF--NSEKVASLAYARIQGKAALIAHF 707

Query:   225 ERFKFYCHTDGYLPVILSPPRDGWNYSKPII 255
             +            P++     DG     PII
Sbjct:   708 QNSSLMNEDRRCQPIVF----DGSESKYPII 734

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2013583 ML5 "MEI2-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 7.9e-12, P = 7.9e-12
 Identities = 48/142 (33%), Positives = 74/142 (52%)

Query:   107 DVYGAMLGEN--TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD 164
             D+   + GE+  TTLMI+NIPN    + LL  +D        K++      ++FLYLP+D
Sbjct:   641 DLEKILNGEDSRTTLMIKNIPNKYTSKMLLAAIDE-------KNQ----GTYNFLYLPID 689

Query:   165 FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
             F+ + N+GYAF+N       + F++A N  KWE     ++K+  +A A IQG+ AL  HF
Sbjct:   690 FKNKCNVGYAFINMLNPELIIPFYEAFNGKKWEKF--NSEKVASLAYARIQGKSALIAHF 747

Query:   225 ERFKFYCHTDGYLPVILSPPRD 246
             +            P+I   P +
Sbjct:   748 QNSSLMNEDMRCRPIIFDTPNN 769

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0045836 "positive regulation of meiosis" evidence=IMP

GO:0045927 "positive regulation of growth" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GENEDB_PFALCIPARUM|PFF1125c PFF1125c "RNA-binding protein mei2 homologue, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 39/108 (36%), Positives = 58/108 (53%)

Query:   117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFV 176
             TT+M+RNIPN   +  L+ +++ H            K  +DF YLP+DFR + N+GYAF+
Sbjct:   290 TTVMLRNIPNKYTQNMLMDVMNEHF-----------KGLYDFFYLPIDFRNKCNVGYAFI 338

Query:   177 NFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
             NF     A  F K  N YK  + A  + K+C +    +QG  A  +H+
Sbjct:   339 NFIHPYYAELFIKFFNNYK--LNAFKSNKVCSVTWGRVQGLKANIEHY 384

GO:0003723 "RNA binding" evidence=ISS

GO:0045836 "positive regulation of meiosis" evidence=ISS

UNIPROTKB|C6KT70 PFF1125c "RNA-binding protein mei2 homologue, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 39/108 (36%), Positives = 58/108 (53%)

Query:   117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFV 176
             TT+M+RNIPN   +  L+ +++ H            K  +DF YLP+DFR + N+GYAF+
Sbjct:   290 TTVMLRNIPNKYTQNMLMDVMNEHF-----------KGLYDFFYLPIDFRNKCNVGYAFI 338

Query:   177 NFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHF 224
             NF     A  F K  N YK  + A  + K+C +    +QG  A  +H+
Sbjct:   339 NFIHPYYAELFIKFFNNYK--LNAFKSNKVCSVTWGRVQGLKANIEHY 384

GO:0003723 "RNA binding" evidence=ISS

GO:0045836 "positive regulation of meiosis" evidence=ISS

POMBASE|SPAC27D7.03c mei2 "RNA-binding protein involved in meiosis Mei2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 166 (63.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 46/127 (36%), Positives = 69/127 (54%)

Query:   117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFV 176
             TT+MI+NIPN   ++ L   +D       + +K      +DFLYL +DF  + N+GYAF+
Sbjct:   597 TTVMIKNIPNKFTQQMLRDYID-------VTNK----GTYDFLYLRIDFVNKCNVGYAFI 645

Query:   177 NFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTD-- 234
             NF      + F KA    +W V    ++K+C+I+ A+IQG+D L    E+F+  C  D  
Sbjct:   646 NFIEPQSIITFGKARVGTQWNVFH--SEKICDISYANIQGKDRL---IEKFRNSCVMDEN 700

Query:   235 -GYLPVI 240
               Y P I
Sbjct:   701 PAYRPKI 707

GO:0003723 "RNA binding" evidence=IDA

GO:0004860 "protein kinase inhibitor activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007127 "meiosis I" evidence=TAS

GO:0033620 "Mei2 nuclear dot" evidence=IDA

GO:0034064 "Tor2-Mei2-Ste11 complex" evidence=IDA

GO:0045836 "positive regulation of meiosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
cd12530	101	cd12530, RRM3_EAR1_like, RNA recognition motif 3 i	9e-29
cd12277	86	cd12277, RRM3_MEI2_EAR1_like, RNA recognition moti	9e-28
pfam04059	97	pfam04059, RRM_2, RNA recognition motif 2	3e-23
cd12531	86	cd12531, RRM3_MEI2_like, RNA recognition motif 3 i	7e-20
cd12532	90	cd12532, RRM3_MEI2_fungi, RNA recognition motif 3	4e-18
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	5e-05
smart00360	73	smart00360, RRM, RNA recognition motif	5e-04
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	6e-04

>gnl|CDD|240974 cd12530, RRM3_EAR1_like, RNA recognition motif 3 in terminal EAR1-like proteins

 Score =  105 bits (264), Expect = 9e-29
 Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 4/102 (3%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHCR--VEYLKSKWHCKSEFDFLYLPMDFRRRANLGYA 174
           TTLMI+NIPN   ++ LL +LD+HC    ++++      S +DF+YLP+DF+ + NLGYA
Sbjct: 2   TTLMIKNIPNKYSQKLLLDMLDTHCIQCNQHIEDSSQPVSSYDFVYLPIDFKNKCNLGYA 61

Query: 175 FVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQG 216
           FVNFT+     RF+KA +  +WE     ++K+C+I  A +QG
Sbjct: 62  FVNFTSPEATWRFYKAFHNQQWEEF--NSRKICQITYARVQG 101

This subgroup corresponds to the RRM3 of terminal EAR1-like proteins, including terminal EAR1-like protein 1 and 2 (TEL1 and TEL2) found in land plants. They may play a role in the regulation of leaf initiation. The terminal EAR1-like proteins are putative RNA-binding proteins carrying three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and TEL characteristic motifs that allow sequence and putative functional discrimination between the terminal EAR1-like proteins and Mei2-like proteins. . Length = 101

>gnl|CDD|240723 cd12277, RRM3_MEI2_EAR1_like, RNA recognition motif 3 in Mei2-like proteins and terminal EAR1-like proteins

 Score =  102 bits (256), Expect = 9e-28
 Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 12/98 (12%)

Query: 119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNF 178
           +MIRNIPN   +  LL +LD H +             +DFLYLP+DF+ + N+GYAF+NF
Sbjct: 1   VMIRNIPNKYTQEMLLQLLDEHGK----------GGAYDFLYLPIDFKNKCNVGYAFINF 50

Query: 179 TTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQG 216
                A +F+KA N  KW+      KK+C+I  A IQG
Sbjct: 51  VNPEYAEKFYKAFNGKKWKNFKS--KKVCDITYARIQG 86

This subfamily corresponds to the RRM3 of Mei2-like proteins from plant and fungi, terminal EAR1-like proteins from plant, and other eukaryotic homologs. Mei2-like proteins represent an ancient eukaryotic RNA-binding proteins family whose corresponding Mei2-like genes appear to have arisen early in eukaryote evolution, been lost from some lineages such as Saccharomyces cerevisiae and metazoans, and diversified in the plant lineage. The plant Mei2-like genes may function in cell fate specification during development, rather than as stimulators of meiosis. In the fission yeast Schizosaccharomyces pombe, the Mei2 protein is an essential component of the switch from mitotic to meiotic growth. S. pombe Mei2 stimulates meiosis in the nucleus upon binding a specific non-coding RNA. The terminal EAR1-like protein 1 and 2 (TEL1 and TEL2) are mainly found in land plants. They may play a role in the regulation of leaf initiation. All members in this family are putative RNA-binding proteins carrying three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). In addition to the RRMs, the terminal EAR1-like proteins also contain TEL characteristic motifs that allow sequence and putative functional discrimination between them and Mei2-like proteins. . Length = 86

>gnl|CDD|112856 pfam04059, RRM_2, RNA recognition motif 2

 Score = 90.7 bits (225), Expect = 3e-23
 Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 13/109 (11%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFV 176
           TTLMI+NIPN   ++ LL  +D              K  +DFLYLP+DF+ + N+GYAF+
Sbjct: 2   TTLMIKNIPNKYTQKMLLAAIDEKN-----------KGTYDFLYLPIDFKNKCNVGYAFI 50

Query: 177 NFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFE 225
           N       + F KA N  KWE       K+  +A A IQG+DAL  HF+
Sbjct: 51  NMIEPQSIIPFGKAFNGKKWEKFNSE--KVASLAYARIQGKDALIAHFQ 97

Length = 97

>gnl|CDD|240975 cd12531, RRM3_MEI2_like, RNA recognition motif 3 in plant Mei2-like proteins

 Score = 81.7 bits (202), Expect = 7e-20
 Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 13/99 (13%)

Query: 119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNF 178
           LMI+NIPN   ++ LL  +D   R  Y           DF YLP+DF+ + N+GYAF+N 
Sbjct: 1   LMIKNIPNKYTQKMLLAAIDEKHRGTY-----------DFFYLPIDFKNKCNVGYAFINM 49

Query: 179 TTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGR 217
            +    + F+KA N  KW  E   ++K+C +A A IQG+
Sbjct: 50  ISPELIVPFYKAFNGKKW--EKFNSEKVCSLAYARIQGK 86

This subgroup corresponds to the RRM3 of Mei2-like proteins, representing an ancient eukaryotic RNA-binding proteins family. Their corresponding Mei2-like genes appear to have arisen early in eukaryote evolution, been lost from some lineages such as Saccharomyces cerevisiae and metazoans, and diversified in the plant lineage. The plant Mei2-like genes may function in cell fate specification during development, rather than as stimulators of meiosis. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The C-terminal RRM (RRM3) is unique to Mei2-like proteins and is highly conserved between plants and fungi. To date, the intracellular localization, RNA target(s), cellular interactions and phosphorylation states of Mei2-like proteins in plants remain unclear. . Length = 86

>gnl|CDD|240976 cd12532, RRM3_MEI2_fungi, RNA recognition motif 3 in fungal Mei2-like proteins

 Score = 77.2 bits (190), Expect = 4e-18
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 13/102 (12%)

Query: 117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFV 176
           TT+M++NIPN   ++ L   +D                 +DF+YL +DF    N+GYAFV
Sbjct: 2   TTVMLKNIPNKFTQQMLRKYIDETN-----------PGTYDFMYLRIDFNNSCNVGYAFV 50

Query: 177 NFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRD 218
           NF      + F KA    KW +    ++K+C+I+ A+IQG++
Sbjct: 51  NFIEPISIITFGKARVGTKWNMFH--SEKVCDISYANIQGKE 90

This subgroup corresponds to the RRM3 of fungal Mei2-like proteins. The Mei2 protein is an essential component of the switch from mitotic to meiotic growth in the fission yeast Schizosaccharomyces pombe. It is an RNA-binding protein that contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). In the nucleus, S. pombe Mei2 stimulates meiosis upon binding a specific non-coding RNA through its C-terminal RRM motif. . Length = 90

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 15/75 (20%)

Query: 119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNF 178
           L +RN+P ++   DL      + +VE ++   +               +    G+AFV F
Sbjct: 1   LYVRNLPPSVTEEDLREFFSPYGKVEGVRLVRN---------------KDRPRGFAFVEF 45

Query: 179 TTAAGALRFWKACNK 193
            +   A    K  N 
Sbjct: 46  ASPEDAEAALKKLNG 60

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVN 177
           TL + N+P +    +L  +     +VE ++             L  D     + G+AFV 
Sbjct: 1   TLFVGNLPPDTTEEELRELFSKFGKVESVR-------------LVRDKETGKSKGFAFVE 47

Query: 178 FTTAAGALRFWKACNKYKWE 197
           F +   A +  +A N  + +
Sbjct: 48  FESEEDAEKALEALNGKELD 67

Length = 73

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNF 178
           L + N+P +    DL  +      +E ++             +  D +   + G+AFV F
Sbjct: 1   LFVGNLPPDTTEEDLRELFSKFGEIESVR-------------IVRD-KDGKSKGFAFVEF 46

Query: 179 TTAAGALRFWKACNKYKW 196
            +   A +  +A N  + 
Sbjct: 47  ESPEDAEKALEALNGKEL 64

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	100.0
KOG4660	549	consensus Protein Mei2, essential for commitment t	100.0
KOG0122	270	consensus Translation initiation factor 3, subunit	99.75
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	99.47
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.3
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.28
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.12
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.12
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.11
smart00362	72	RRM_2 RNA recognition motif.	98.97
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	98.95
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	98.92
smart00360	71	RRM RNA recognition motif.	98.92
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	98.9
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	98.9
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	98.88
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.87
COG0724	306	RNA-binding proteins (RRM domain) [General functio	98.86
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	98.76
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	98.76
KOG4207	256	consensus Predicted splicing factor, SR protein su	98.73
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	98.71
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	98.7
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	98.62
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	98.62
PLN03120	260	nucleic acid binding protein; Provisional	98.47
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	98.46
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	98.46
smart00361	70	RRM_1 RNA recognition motif.	98.4
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	98.39
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	98.38
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	98.37
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	98.29
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	98.23
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	98.11
PLN03121	243	nucleic acid binding protein; Provisional	98.01
PLN03213	759	repressor of silencing 3; Provisional	98.01
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	98.0
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	97.95
KOG0107	195	consensus Alternative splicing factor SRp20/9G8 (R	97.93
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	97.93
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	97.92
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	97.91
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	97.91
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	97.85
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	97.83
KOG4208	214	consensus Nucleolar RNA-binding protein NIFK [Gene	97.72
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.71
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	97.63
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	97.63
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	97.57
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	97.5
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	97.44
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	97.35
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	97.34
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	97.31
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	97.3
KOG1295	376	consensus Nonsense-mediated decay protein Upf3 [RN	97.23
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	97.19
KOG4212	608	consensus RNA-binding protein hnRNP-M [RNA process	97.15
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	97.1
KOG0105	241	consensus Alternative splicing factor ASF/SF2 (RRM	97.01
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	96.96
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	96.84
KOG0533	243	consensus RRM motif-containing protein [RNA proces	96.55
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	96.38
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	96.13
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	96.07
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	95.95
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	95.91
KOG1457	284	consensus RNA binding protein (contains RRM repeat	95.87
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	95.81
KOG0226	290	consensus RNA-binding proteins [General function p	95.73
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	95.66
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	95.47
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	95.32
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	94.68
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	94.36
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	94.26
KOG2314	698	consensus Translation initiation factor 3, subunit	94.16
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.6
KOG0151	877	consensus Predicted splicing regulator, contains R	93.49
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	93.35
KOG4660	549	consensus Protein Mei2, essential for commitment t	93.28
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	93.11
KOG2416	718	consensus Acinus (induces apoptotic chromatin cond	92.99
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	92.26
KOG1190	492	consensus Polypyrimidine tract-binding protein [RN	91.9
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	91.89
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	91.7
KOG3152	278	consensus TBP-binding protein, activator of basal	91.65
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	90.48
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	89.74
KOG4209	231	consensus Splicing factor RNPS1, SR protein superf	89.44
KOG1548	382	consensus Transcription elongation factor TAT-SF1	89.34
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	85.85
KOG0106	216	consensus Alternative splicing factor SRp55/B52/SR	84.31
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	83.61
KOG4211	510	consensus Splicing factor hnRNP-F and related RNA-	82.21
KOG1365	508	consensus RNA-binding protein Fusilli, contains RR	80.68
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	80.37

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=100.00  E-value=2e-45  Score=297.11  Aligned_cols=97  Identities=56%  Similarity=0.983  Sum_probs=94.8

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      |||||||||||+|||++|+++||++|           .|+||||||||||+++||+|||||||+++++|.+|++.|+|++
T Consensus         1 RTTvMirNIPn~~t~~~L~~~l~~~~-----------~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~   69 (97)
T PF04059_consen    1 RTTVMIRNIPNKYTQEMLIQILDEHF-----------KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKK   69 (97)
T ss_pred             CeeEEEecCCCCCCHHHHHHHHHHhc-----------cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCc
Confidence            89999999999999999999999976           7999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCcChHHHHHHhc
Q 037791          196 WEVEAPGNKKMCEIACADIQGRDALEKHFE  225 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQGk~aLv~hFr  225 (295)
                      |+.++  |+|+|+|+||++||+++|++|||
T Consensus        70 w~~~~--s~Kvc~i~yAriQG~~alv~~f~   97 (97)
T PF04059_consen   70 WPNFN--SKKVCEISYARIQGKDALVEHFR   97 (97)
T ss_pred             cccCC--CCcEEEEehhHhhCHHHHHHhhC
Confidence            99987  99999999999999999999996

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.5e-41  Score=332.78  Aligned_cols=144  Identities=42%  Similarity=0.773  Sum_probs=133.3

Q ss_pred             cccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccC---------------ccCCCccEEEecccccCCcceee
Q 037791          109 YGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKW---------------HCKSEFDFLYLPMDFRRRANLGY  173 (295)
Q Consensus       109 ~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~---------------~~~G~YDFlYLPiDf~t~~N~GY  173 (295)
                      ++...+.|||+||+||||+++|.||..|+|.||..+|.++.+               .-.|.|||+||||||+++||+||
T Consensus       354 ~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGY  433 (549)
T KOG4660|consen  354 ILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGY  433 (549)
T ss_pred             ccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccce
Confidence            456678999999999999999999999999999998877642               33899999999999999999999


Q ss_pred             EEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcChHHHHHHhcccccccCCCCccceeeeCCCCCCCCCCc
Q 037791          174 AFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDGYLPVILSPPRDGWNYSKP  253 (295)
Q Consensus       174 AFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~v~~~~~eyrP~iF~p~rdG~~~~~~  253 (295)
                      |||||++++++++|+++|||+.|.+|+  |.|||+|+||+|||+++|++||+||++|||++.|+|+||+|++||-...++
T Consensus       434 AFINm~sp~ai~~F~kAFnGk~W~~Fn--S~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~pp~dg~~~~~p  511 (549)
T KOG4660|consen  434 AFINMTSPEAIIRFYKAFNGKKWEKFN--SEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSPPEDGREEPEP  511 (549)
T ss_pred             eEEeecCHHHHHHHHHHHcCCchhhhc--ceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecCcccccccCcc
Confidence            999999999999999999999999998  999999999999999999999999999999999999999999999855544


Q ss_pred             e
Q 037791          254 I  254 (295)
Q Consensus       254 ~  254 (295)
                      .
T Consensus       512 ~  512 (549)
T KOG4660|consen  512 V  512 (549)
T ss_pred             c
Confidence            3

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=7.2e-18  Score=156.02  Aligned_cols=143  Identities=18%  Similarity=0.284  Sum_probs=113.5

Q ss_pred             CCceee------ecccccCCccccCCCCCCccCCcCCCCCCCCCccccc----ccccccCCccCCcccccccCCccCCCC
Q 037791           35 APVMTC------HRRLSCKPKCFYQPKPPVWCSHSANVVPPYNNDNVKA----KVAVTRPLTMRGKVVGHKRNLKWAPKN  104 (295)
Q Consensus        35 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~r~~~~~p~~  104 (295)
                      +-+|.|      |--..|.-|--+.|        ++++++..+.+.+.+    +.|+|+||+||.+.. +.++ +|... 
T Consensus       117 ~~~~~CR~C~gdHwt~~CPyK~~~~~--------~lde~~~~e~~~~~~ap~~~~g~yvpP~mR~ga~-~~~g-~~~R~-  185 (270)
T KOG0122|consen  117 KSIVACRICKGDHWTTNCPYKDTLSP--------ALDEPATAESPAESAAPGTKKGKYVPPSMRAGAD-RASG-SDMRE-  185 (270)
T ss_pred             cceeeeeecCCCeeeecCCchhhccc--------cccCCcccccchhhcCcCCcCccccCccccCCcc-cccc-ccccc-
Confidence            345666      55556666666655        455555544444444    349999999997732 2223 45442 


Q ss_pred             CCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHH
Q 037791          105 RDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGA  184 (295)
Q Consensus       105 ~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA  184 (295)
                              .++-.||.|-|||.++++.+|+++|-.             +|.+--+||.+|..|+..+|||||+|.+.+||
T Consensus       186 --------R~D~~tvRvtNLsed~~E~dL~eLf~~-------------fg~i~rvylardK~TG~~kGFAFVtF~sRddA  244 (270)
T KOG0122|consen  186 --------RDDEATVRVTNLSEDMREDDLEELFRP-------------FGPITRVYLARDKETGLSKGFAFVTFESRDDA  244 (270)
T ss_pred             --------CCccceeEEecCccccChhHHHHHhhc-------------cCccceeEEEEccccCcccceEEEEEecHHHH
Confidence                    456779999999999999999999987             88999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccccCCCCCceEEEEeccCc
Q 037791          185 LRFWKACNKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +++++.+||+.|.++      |+.|+||++|
T Consensus       245 ~rAI~~LnG~gyd~L------ILrvEwskP~  269 (270)
T KOG0122|consen  245 ARAIADLNGYGYDNL------ILRVEWSKPS  269 (270)
T ss_pred             HHHHHHccCcccceE------EEEEEecCCC
Confidence            999999999999976      8999999987

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=99.47  E-value=8.5e-14  Score=130.91  Aligned_cols=85  Identities=22%  Similarity=0.335  Sum_probs=79.8

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ..+.+|+|+|.+||..+||++|+.+|.+             .|+++.+-|..|..++.++||+|||+.+++||++++..+
T Consensus        37 t~~skTNLIvNYLPQ~MTqdE~rSLF~S-------------iGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Aintl  103 (360)
T KOG0145|consen   37 TDESKTNLIVNYLPQNMTQDELRSLFGS-------------IGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTL  103 (360)
T ss_pred             cCcccceeeeeecccccCHHHHHHHhhc-------------ccceeeeeeeeccccccccccceeeecChHHHHHHHhhh
Confidence            3577999999999999999999999998             688999999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCc
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ||.++.      .|+++|+|||+-
T Consensus       104 NGLrLQ------~KTIKVSyARPS  121 (360)
T KOG0145|consen  104 NGLRLQ------NKTIKVSYARPS  121 (360)
T ss_pred             cceeec------cceEEEEeccCC
Confidence            999996      679999999963

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.30  E-value=1.4e-11  Score=105.10  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=77.1

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .....|+|+|.|||..+|+++|+++|..             +|.+..+.++.|..|+.++|||||.|.+.++|..+++.+
T Consensus        30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l   96 (144)
T PLN03134         30 LRLMSTKLFIGGLSWGTDDASLRDAFAH-------------FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM   96 (144)
T ss_pred             ccCCCCEEEEeCCCCCCCHHHHHHHHhc-------------CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence            4567889999999999999999999997             788999999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAri  214 (295)
                      ||+.+.      .+.+.|.||+-
T Consensus        97 ng~~i~------Gr~l~V~~a~~  113 (144)
T PLN03134         97 DGKELN------GRHIRVNPAND  113 (144)
T ss_pred             CCCEEC------CEEEEEEeCCc
Confidence            999875      45899999864

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.28  E-value=1.4e-11  Score=114.53  Aligned_cols=83  Identities=20%  Similarity=0.348  Sum_probs=76.0

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      |.+|||+|+|||.++|+++|+++|.+             +|.+.-+.|..|..++.++|||||.|.+.++|.++++.+||
T Consensus         1 ~~~~~l~V~nLp~~~~e~~l~~~F~~-------------~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g   67 (352)
T TIGR01661         1 ESKTNLIVNYLPQTMTQEEIRSLFTS-------------IGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNG   67 (352)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHc-------------cCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhccc
Confidence            45899999999999999999999998             78999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ..+.      .+.+.|.||+..
T Consensus        68 ~~l~------g~~i~v~~a~~~   83 (352)
T TIGR01661        68 LRLQ------NKTIKVSYARPS   83 (352)
T ss_pred             EEEC------CeeEEEEeeccc
Confidence            8875      557899998743

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PF00076 RRM_1: RNA recognition motif

Probab=99.12  E-value=2.5e-10  Score=81.58  Aligned_cols=66  Identities=20%  Similarity=0.328  Sum_probs=61.7

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEV  198 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~  198 (295)
                      |+|+|||..+|+++|+++|.+             +|.+..+.+..+ .++...|||||.|.+.++|.++++.+||+.|..
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~-------------~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~   66 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQ-------------FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING   66 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHT-------------TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             cEEcCCCCcCCHHHHHHHHHH-------------hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence            789999999999999999998             788888999988 788899999999999999999999999999863

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.12  E-value=2.6e-10  Score=109.95  Aligned_cols=85  Identities=21%  Similarity=0.364  Sum_probs=77.0

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .....|||.|.|||.++|+++|+++|..             +|.+..+.|..|..++.++|||||.|.++++|.++++.+
T Consensus       103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~-------------~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~L  169 (346)
T TIGR01659       103 TNNSGTNLIVNYLPQDMTDRELYALFRT-------------IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNL  169 (346)
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHc
Confidence            3456899999999999999999999997             688899999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCc
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ||..+.      .+.+.|.||+..
T Consensus       170 nG~~l~------gr~i~V~~a~p~  187 (346)
T TIGR01659       170 NGITVR------NKRLKVSYARPG  187 (346)
T ss_pred             CCCccC------Cceeeeeccccc
Confidence            998874      567899998753

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.11  E-value=2.9e-10  Score=105.68  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|.|+|||.++++++|.++|..             +|.+..+.+..|..|+.++|||||.|.+.++|..+++.+||..+.
T Consensus       271 ~lfV~NL~~~~~e~~L~~~F~~-------------fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~  337 (352)
T TIGR01661       271 CIFVYNLSPDTDETVLWQLFGP-------------FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG  337 (352)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHh-------------CCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC
Confidence            6999999999999999999997             788999999999999999999999999999999999999999885


Q ss_pred             ccCCCCCceEEEEeccC
Q 037791          198 VEAPGNKKMCEIACADI  214 (295)
Q Consensus       198 ~~~~gS~KiceVsyAri  214 (295)
                            ++.+.|+|+.-
T Consensus       338 ------gr~i~V~~~~~  348 (352)
T TIGR01661       338 ------NRVLQVSFKTN  348 (352)
T ss_pred             ------CeEEEEEEccC
Confidence                  57899999864

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>smart00362 RRM_2 RNA recognition motif

Probab=98.97  E-value=3.7e-09  Score=73.51  Aligned_cols=65  Identities=26%  Similarity=0.430  Sum_probs=58.1

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      ||+|+|||..+++++|+++|..             +|....+.+..+.  +.+.|||||.|.++++|.++++.++|..|.
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~-------------~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~   65 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSK-------------FGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG   65 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHh-------------cCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence            6899999999999999999987             6777777777666  678899999999999999999999998885

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=98.95  E-value=3.4e-09  Score=102.31  Aligned_cols=87  Identities=21%  Similarity=0.211  Sum_probs=78.8

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..|||.|.|||..+|+++|+++|.+             +|.+..+.++.|..++.++|||||.|.+.++|.++++.+||.
T Consensus       192 ~~~~lfV~nLp~~vtee~L~~~F~~-------------fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~  258 (346)
T TIGR01659       192 KDTNLYVTNLPRTITDDQLDTIFGK-------------YGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV  258 (346)
T ss_pred             ccceeEEeCCCCcccHHHHHHHHHh-------------cCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence            4679999999999999999999987             788888999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcChH
Q 037791          195 KWEVEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQGk~  218 (295)
                      .+..    ..+.+.|.||.-+++.
T Consensus       259 ~~~g----~~~~l~V~~a~~~~~~  278 (346)
T TIGR01659       259 IPEG----GSQPLTVRLAEEHGKA  278 (346)
T ss_pred             ccCC----CceeEEEEECCccccc
Confidence            8863    4568999999988764

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PF14259 RRM_6: RNA recognition motif (a

Probab=98.92  E-value=3.6e-09  Score=77.15  Aligned_cols=65  Identities=22%  Similarity=0.315  Sum_probs=57.9

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      |+|+|||...|.++|+++|..             .|....+.+..+.. +...|+|||.|.++++|.++++..+|..|.
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~-------------~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~   65 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSR-------------FGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEID   65 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTT-------------SSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred             CEEeCCCCCCCHHHHHHHHHh-------------cCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence            789999999999999999987             57788899988876 889999999999999999999999998886

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>smart00360 RRM RNA recognition motif

Probab=98.92  E-value=5.5e-09  Score=72.21  Aligned_cols=64  Identities=20%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             EcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          121 IRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       121 IRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      |+|||..+++++|+++|..             +|....+.++.+..++.+.|||||.|.++++|..+++.++|..+.
T Consensus         1 i~~l~~~~~~~~l~~~f~~-------------~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~   64 (71)
T smart00360        1 VGNLPPDVTEEELRELFSK-------------FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD   64 (71)
T ss_pred             CCCCCcccCHHHHHHHHHh-------------hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence            6899999999999999987             688888999998888999999999999999999999999998874

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=98.90  E-value=5.4e-09  Score=101.10  Aligned_cols=79  Identities=18%  Similarity=0.294  Sum_probs=73.4

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||+|.|||..+|+++|+++|..             +|.+..+.|..|..++.+.|||||.|.+.++|..+++.+||..
T Consensus       186 ~~~l~v~nl~~~~te~~l~~~f~~-------------~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~  252 (457)
T TIGR01622       186 FLKLYVGNLHFNITEQELRQIFEP-------------FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFE  252 (457)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcE
Confidence            579999999999999999999987             7889999999999999999999999999999999999999987


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      +.      ++.+.|.||.
T Consensus       253 i~------g~~i~v~~a~  264 (457)
T TIGR01622       253 LA------GRPIKVGYAQ  264 (457)
T ss_pred             EC------CEEEEEEEcc
Confidence            74      5689999986

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=98.90  E-value=5e-09  Score=104.69  Aligned_cols=78  Identities=21%  Similarity=0.275  Sum_probs=71.4

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      ++|.|+|||.++|+++|.++|.+             +|.+.-+-+..|..|+.++|||||+|.++++|.++++.+|+..+
T Consensus         1 ~sl~VgnLp~~vte~~L~~~F~~-------------~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i   67 (562)
T TIGR01628         1 ASLYVGDLDPDVTEAKLYDLFKP-------------FGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL   67 (562)
T ss_pred             CeEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence            48999999999999999999998             68899999999999999999999999999999999999999877


Q ss_pred             cccCCCCCceEEEEecc
Q 037791          197 EVEAPGNKKMCEIACAD  213 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAr  213 (295)
                      .      +|.+.|.|+.
T Consensus        68 ~------gk~i~i~~s~   78 (562)
T TIGR01628        68 G------GKPIRIMWSQ   78 (562)
T ss_pred             C------CeeEEeeccc
Confidence            4      5578888874

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=98.88  E-value=1.8e-08  Score=70.41  Aligned_cols=74  Identities=20%  Similarity=0.326  Sum_probs=64.2

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|+|+|||...+.++|+++|..             .|.+..+++..+..+ ...|+|||.|.++++|..+++.++|..+.
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~-------------~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~   66 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSK-------------FGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELG   66 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHh-------------cCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence            5899999999999999999987             578888999888766 66899999999999999999999999864


Q ss_pred             ccCCCCCceEEEEe
Q 037791          198 VEAPGNKKMCEIAC  211 (295)
Q Consensus       198 ~~~~gS~KiceVsy  211 (295)
                            ++.+.|.|
T Consensus        67 ------~~~~~v~~   74 (74)
T cd00590          67 ------GRPLRVEF   74 (74)
T ss_pred             ------CeEEEEeC
Confidence                  44666654

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.87  E-value=9.9e-09  Score=100.41  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=75.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..++|.|.|||..+|.++|.++|..             +|.+.-+.|..|..++.+.|||||.|.+.++|..+++.+|
T Consensus       292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-------------~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~  358 (509)
T TIGR01642       292 LDSKDRIYIGNLPLYLGEDQIKELLES-------------FGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN  358 (509)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence            355689999999999999999999997             6788888899999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..+.      ++.+.|.||..+
T Consensus       359 g~~~~------~~~l~v~~a~~~  375 (509)
T TIGR01642       359 GKDTG------DNKLHVQRACVG  375 (509)
T ss_pred             CCEEC------CeEEEEEECccC
Confidence            99985      446899998654

Members of this subfamily are found in plants, metazoa and fungi.

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=98.86  E-value=1.4e-08  Score=85.44  Aligned_cols=83  Identities=24%  Similarity=0.324  Sum_probs=75.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      ..||.|.|||.++|+++|.++|..             +|....+.+..|..++...|||||.|.+.++|..+++.++|..
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~-------------~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~  181 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKK-------------FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE  181 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHh-------------cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe
Confidence            589999999999999999999998             7888999999999899999999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEecc--CcCh
Q 037791          196 WEVEAPGNKKMCEIACAD--IQGR  217 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr--iQGk  217 (295)
                      |.      ++.+.|.++.  .+.+
T Consensus       182 ~~------~~~~~v~~~~~~~~~~  199 (306)
T COG0724         182 LE------GRPLRVQKAQPASQPR  199 (306)
T ss_pred             EC------CceeEeeccccccccc
Confidence            86      5578999976  4444

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=98.76  E-value=3.3e-08  Score=101.49  Aligned_cols=71  Identities=28%  Similarity=0.404  Sum_probs=64.8

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+.-|+|.|.|||..+|+++|+++|.+             +|.+.-+.|.+| .++.|+|||||.|.+.++|.++++.+|
T Consensus        55 p~~~~~lFVgnLp~~~tEd~L~~~F~~-------------~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~ln  120 (578)
T TIGR01648        55 PGRGCEVFVGKIPRDLYEDELVPLFEK-------------AGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLN  120 (578)
T ss_pred             CCCCCEEEeCCCCCCCCHHHHHHHHHh-------------hCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcC
Confidence            445699999999999999999999998             677777899999 789999999999999999999999999


Q ss_pred             CCccc
Q 037791          193 KYKWE  197 (295)
Q Consensus       193 G~~w~  197 (295)
                      |+.+.
T Consensus       121 g~~i~  125 (578)
T TIGR01648       121 NYEIR  125 (578)
T ss_pred             CCeec
Confidence            98774

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=98.76  E-value=2.9e-08  Score=99.22  Aligned_cols=81  Identities=17%  Similarity=0.244  Sum_probs=73.4

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..-++|.|+|||..+|+++|+++|..             +|.+..+.+..| .++.+.|||||.|.+.++|.+++..+||
T Consensus       283 ~~~~~l~V~nl~~~~~~~~L~~~F~~-------------~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g  348 (562)
T TIGR01628       283 AQGVNLYVKNLDDTVTDEKLRELFSE-------------CGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHG  348 (562)
T ss_pred             cCCCEEEEeCCCCccCHHHHHHHHHh-------------cCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcC
Confidence            44578999999999999999999998             788999999999 6789999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccC
Q 037791          194 YKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAri  214 (295)
                      ..+.      +|.+.|.||.-
T Consensus       349 ~~~~------gk~l~V~~a~~  363 (562)
T TIGR01628       349 RMLG------GKPLYVALAQR  363 (562)
T ss_pred             CeeC------CceeEEEeccC
Confidence            7764      67899999874

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=98.73  E-value=2e-08  Score=92.38  Aligned_cols=86  Identities=20%  Similarity=0.257  Sum_probs=78.5

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      +.++-|+|.|-||-+..|-++|..+|+.             .|..--+|+|.|-.|+...|||||-|.+..||+++.+++
T Consensus         9 dv~gm~SLkVdNLTyRTspd~LrrvFek-------------YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~dam   75 (256)
T KOG4207|consen    9 DVEGMTSLKVDNLTYRTSPDDLRRVFEK-------------YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAM   75 (256)
T ss_pred             CcccceeEEecceeccCCHHHHHHHHHH-------------hCcccceecccccccccccceeEEEeeecchHHHHHHhh
Confidence            5788999999999999999999999998             788999999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +|..++      .+.+.|..|+.--
T Consensus        76 DG~~ld------gRelrVq~arygr   94 (256)
T KOG4207|consen   76 DGAVLD------GRELRVQMARYGR   94 (256)
T ss_pred             cceeec------cceeeehhhhcCC
Confidence            999986      4567787777543

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=98.71  E-value=5.7e-08  Score=100.37  Aligned_cols=81  Identities=11%  Similarity=0.195  Sum_probs=73.8

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|.|||..++.++|+++|+.             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+||
T Consensus       202 ~~~~rLfVgnLp~~vteedLk~lFs~-------------FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg  268 (612)
T TIGR01645       202 KKFNRIYVASVHPDLSETDIKSVFEA-------------FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL  268 (612)
T ss_pred             cccceEEeecCCCCCCHHHHHHHHhh-------------cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC
Confidence            44579999999999999999999997             78999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEecc
Q 037791          194 YKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAr  213 (295)
                      +.|.      ++.+.|.+|.
T Consensus       269 ~elg------Gr~LrV~kAi  282 (612)
T TIGR01645       269 FDLG------GQYLRVGKCV  282 (612)
T ss_pred             CeeC------CeEEEEEecC
Confidence            9885      5578887765

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=98.70  E-value=1.4e-08  Score=89.77  Aligned_cols=150  Identities=17%  Similarity=0.259  Sum_probs=60.0

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEec--cc-cc-CCcceeeEEEecCCHHHHHHHHH
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLP--MD-FR-RRANLGYAFVNFTTAAGALRFWK  189 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLP--iD-f~-t~~N~GYAFVNF~spedA~~F~~  189 (295)
                      ..++.|.||+||..+|+++|.+.|+..-           ...++|-|..  .+ .. ...-.+.|||+|.+.+++..|.+
T Consensus         5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l-----------~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~   73 (176)
T PF03467_consen    5 KEGTKVVIRRLPPNLTEEEFWEQISPWL-----------PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRD   73 (176)
T ss_dssp             ----EEEEEEE-TTS-HHHHCCCCSS-------------SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHH
T ss_pred             ccCceEEEeCCCCCCCHHHHHHHhhhhc-----------ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHH
Confidence            4578999999999999999999777521           2333344443  22 11 23345999999999999999999


Q ss_pred             HhcCCcccccCCCCCceEEEEeccCcChHH---HHHHhcccccccCCCCc---cceeeeCC----CCCCCCC----C--c
Q 037791          190 ACNKYKWEVEAPGNKKMCEIACADIQGRDA---LEKHFERFKFYCHTDGY---LPVILSPP----RDGWNYS----K--P  253 (295)
Q Consensus       190 ~fnG~~w~~~~~gS~KiceVsyAriQGk~a---Lv~hFrnS~v~~~~~ey---rP~iF~p~----rdG~~~~----~--~  253 (295)
                      .|+|+.|.+.. |..-++.|+||..|....   ....=+.++|-. +++|   +-.+=.+.    .+. +..    +  .
T Consensus        74 ~~~g~~F~D~k-g~~~~~~VE~Apyqk~p~~~k~k~d~r~GTIe~-D~~y~~Fle~L~~~~~~~~~~~-s~~~~l~k~e~  150 (176)
T PF03467_consen   74 RFDGHVFVDSK-GNEYPAVVEFAPYQKVPKPSKKKKDPREGTIEQ-DPEYQAFLESLEEPEEKPSQDI-SAEKSLEKKEK  150 (176)
T ss_dssp             HCTTEEEE-TT-S-EEEEEEEE-SS-------------------------------------------------------
T ss_pred             hcCCcEEECCC-CCCcceeEEEcchhcccccccccccccCCCccC-CHHHHHHHHHHhccccccccCc-chhhhhhhhhh
Confidence            99999998876 667799999999988743   233445555554 4554   33432221    111 110    0  0


Q ss_pred             e-ecccccCCCCCCCCchhhhhhhc
Q 037791          254 I-IVGKRFDVAAAPPLYFDRKFRSK  277 (295)
Q Consensus       254 ~-~vG~~~~~~f~pp~~~~r~~Rs~  277 (295)
                      . -+........||+..|.|.+|+.
T Consensus       151 ~~~~~~~~~~~~TpLie~lk~kk~~  175 (176)
T PF03467_consen  151 EEKAKEKAEKVTTPLIEYLKEKKAN  175 (176)
T ss_dssp             -------------------------
T ss_pred             hhhccccccccchHHHHHHHHHhhc
Confidence            0 11112223499999999998875

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=98.62  E-value=9.9e-08  Score=98.63  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=67.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..++|.|.|||..+++++|+++|..             +|.+.-+.++.|..++.++|||||.|.++++|.++++.+|
T Consensus       104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~-------------fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ln  170 (612)
T TIGR01645       104 LAIMCRVYVGSISFELREDTIRRAFDP-------------FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN  170 (612)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHc-------------cCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcC
Confidence            356679999999999999999999997             7889999999999999999999999999999999999999


Q ss_pred             CCccc
Q 037791          193 KYKWE  197 (295)
Q Consensus       193 G~~w~  197 (295)
                      |+.+.
T Consensus       171 G~~i~  175 (612)
T TIGR01645       171 GQMLG  175 (612)
T ss_pred             CeEEe
Confidence            98875

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=98.62  E-value=2.9e-07  Score=89.19  Aligned_cols=68  Identities=15%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      ..||+|.|||..+|+++|+++|..             +|.+..+.|..|..++.+.|||||.|.+.++|.++++ ++|..
T Consensus        89 ~~~l~V~nlp~~~~~~~l~~~F~~-------------~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~  154 (457)
T TIGR01622        89 DRTVFVLQLALKARERDLYEFFSK-------------VGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM  154 (457)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE
Confidence            459999999999999999999998             6789999999999999999999999999999999986 88887


Q ss_pred             cc
Q 037791          196 WE  197 (295)
Q Consensus       196 w~  197 (295)
                      +.
T Consensus       155 ~~  156 (457)
T TIGR01622       155 LL  156 (457)
T ss_pred             EC
Confidence            75

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>PLN03120 nucleic acid binding protein; Provisional

Probab=98.47  E-value=6.6e-07  Score=84.20  Aligned_cols=75  Identities=15%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||.|.|||.+.|+++|+++|..             .|++..+.|+.|-.   +.|||||.|.++++|..++. +||..
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~-------------~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~   66 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSF-------------SGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGAT   66 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCe
Confidence            469999999999999999999986             78999999998864   45999999999999999995 99998


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      +.      ++.+.|.+|.
T Consensus        67 l~------gr~V~Vt~a~   78 (260)
T PLN03120         67 IV------DQSVTITPAE   78 (260)
T ss_pred             eC------CceEEEEecc
Confidence            85      5578998865

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=98.46  E-value=6.3e-07  Score=89.10  Aligned_cols=77  Identities=12%  Similarity=0.078  Sum_probs=68.0

Q ss_pred             CccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          115 ENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       115 ~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..+||+|+|||. ++|.++|.++|..             +|.+..+.+..|.     .|||||.|.++++|..+++.+||
T Consensus       274 ~~~~l~v~nL~~~~vt~~~L~~lF~~-------------yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng  335 (481)
T TIGR01649       274 PGSVLMVSGLHQEKVNCDRLFNLFCV-------------YGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNG  335 (481)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC
Confidence            457999999997 7999999999997             7888888887763     59999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ..|.      ++.+.|++|+.+
T Consensus       336 ~~l~------g~~l~v~~s~~~  351 (481)
T TIGR01649       336 VKLF------GKPLRVCPSKQQ  351 (481)
T ss_pred             CEEC------CceEEEEEcccc
Confidence            9985      568999999765

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=98.46  E-value=5.1e-07  Score=90.17  Aligned_cols=80  Identities=25%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..-+-|.|--||.++.+++|+-++++             .|++-=|-|-||.-++.|+|||||.|++.++|+.+++.+|+
T Consensus        81 ~~G~EVfvGkIPrD~~EdeLvplfEk-------------iG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn  147 (506)
T KOG0117|consen   81 PRGCEVFVGKIPRDVFEDELVPLFEK-------------IGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN  147 (506)
T ss_pred             CCCceEEecCCCccccchhhHHHHHh-------------ccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC
Confidence            34578999999999999999999998             57777788999988999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEe
Q 037791          194 YKWEVEAPGNKKMCEIAC  211 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsy  211 (295)
                      +.+.     +.|.+.|+.
T Consensus       148 ~Eir-----~GK~igvc~  160 (506)
T KOG0117|consen  148 YEIR-----PGKLLGVCV  160 (506)
T ss_pred             cccc-----CCCEeEEEE
Confidence            9987     456555443

>smart00361 RRM_1 RNA recognition motif

Probab=98.40  E-value=1.1e-06  Score=65.64  Aligned_cols=59  Identities=14%  Similarity=0.144  Sum_probs=51.0

Q ss_pred             HHHHHHHHhhhchhhhhcccCccCCCccEEE-ecccccC--CcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          130 RRDLLHILDSHCRVEYLKSKWHCKSEFDFLY-LPMDFRR--RANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       130 q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlY-LPiDf~t--~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +++|++.|.+-|.         .+|.+-.++ +.+|..+  +..+|||||.|.+.++|.++++.+||..+.
T Consensus         2 ~~~l~~~~~~~~~---------~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~   63 (70)
T smart00361        2 DEDFEREFSEEEE---------YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD   63 (70)
T ss_pred             chhHHHHHHHHHH---------hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            6789999986553         278888887 8888777  888999999999999999999999999885

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=98.39  E-value=1.7e-06  Score=86.13  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=64.4

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC--ccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE--FDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~--YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..||.|.|||..+|+++|+++|.+             +|.  +..+-+- +-.+ ...|+|||.|.+.++|.+++..+||
T Consensus       394 s~~L~v~NLp~~~tee~L~~lF~~-------------~G~~~i~~ik~~-~~~~-~~~~~gfVeF~~~e~A~~Al~~ln~  458 (481)
T TIGR01649       394 SATLHLSNIPLSVSEEDLKELFAE-------------NGVHKVKKFKFF-PKDN-ERSKMGLLEWESVEDAVEALIALNH  458 (481)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHh-------------cCCccceEEEEe-cCCC-CcceeEEEEcCCHHHHHHHHHHhcC
Confidence            458999999999999999999998             454  3333221 1122 2579999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.+..-.+.....+.|+||+.+
T Consensus       459 ~~l~~~~~~~~~~lkv~fs~~~  480 (481)
T TIGR01649       459 HQLNEPNGSAPYHLKVSFSTSR  480 (481)
T ss_pred             CccCCCCCCccceEEEEeccCC
Confidence            9997422112237999999764

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=98.38  E-value=7.3e-07  Score=89.08  Aligned_cols=102  Identities=20%  Similarity=0.326  Sum_probs=77.5

Q ss_pred             cccccccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCc
Q 037791           90 KVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA  169 (295)
Q Consensus        90 ~~~~~~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~  169 (295)
                      +..|+.--..|.-.+.+-. ......=--|.||||+...|++.|+++|++             +|+.+-+--+.|     
T Consensus       234 klwgn~~tVdWAep~~e~d-ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~-------------~G~veRVkk~rD-----  294 (506)
T KOG0117|consen  234 KLWGNAITVDWAEPEEEPD-EDTMSKVKVLYVRNLMESTTEETLKKLFNE-------------FGKVERVKKPRD-----  294 (506)
T ss_pred             eecCCcceeeccCcccCCC-hhhhhheeeeeeeccchhhhHHHHHHHHHh-------------ccceEEeecccc-----
Confidence            3345555566765543211 011122235899999999999999999998             577888877765     


Q ss_pred             ceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcChHH
Q 037791          170 NLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRDA  219 (295)
Q Consensus       170 N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk~a  219 (295)
                         ||||.|.+.++|.++++.+||+.++.      -.++|+.|++|-++.
T Consensus       295 ---YaFVHf~eR~davkAm~~~ngkeldG------~~iEvtLAKP~~k~k  335 (506)
T KOG0117|consen  295 ---YAFVHFAEREDAVKAMKETNGKELDG------SPIEVTLAKPVDKKK  335 (506)
T ss_pred             ---eeEEeecchHHHHHHHHHhcCceecC------ceEEEEecCChhhhc
Confidence               99999999999999999999999973      379999999998753

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=98.37  E-value=1.5e-06  Score=89.42  Aligned_cols=79  Identities=16%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||+|+|||..+|+++|+++|.+..           .|.+.-+-+.        .|||||.|.+.++|.++++.+|
T Consensus       230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~-----------~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ln  290 (578)
T TIGR01648       230 MAKVKILYVRNLMTTTTEEIIEKSFSEFK-----------PGKVERVKKI--------RDYAFVHFEDREDAVKAMDELN  290 (578)
T ss_pred             cccccEEEEeCCCCCCCHHHHHHHHHhcC-----------CCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhC
Confidence            34457899999999999999999999730           1666655332        4799999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.++|+||+...
T Consensus       291 G~~i~------Gr~I~V~~Akp~~  308 (578)
T TIGR01648       291 GKELE------GSEIEVTLAKPVD  308 (578)
T ss_pred             CCEEC------CEEEEEEEccCCC
Confidence            99885      5689999998753

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=98.29  E-value=3.8e-06  Score=80.63  Aligned_cols=99  Identities=16%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             ccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeE
Q 037791           95 KRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYA  174 (295)
Q Consensus        95 ~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYA  174 (295)
                      .+-..|.|.+...+++   |.--||-|-.|+...++..|+..|..             +|.+--+-|..|..|+.++|||
T Consensus        83 ~~l~~wdP~~dp~a~g---DPy~TLFv~RLnydT~EskLrreF~~-------------YG~IkrirlV~d~vTgkskGYA  146 (335)
T KOG0113|consen   83 RRLKLWDPNNDPNAIG---DPYKTLFVARLNYDTSESKLRREFEK-------------YGPIKRIRLVRDKVTGKSKGYA  146 (335)
T ss_pred             HHHHhcCCCCCCcccC---CccceeeeeeccccccHHHHHHHHHh-------------cCcceeEEEeeecccCCccceE
Confidence            3456899987665543   88899999999999999999999997             8999999999999999999999


Q ss_pred             EEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCc
Q 037791          175 FVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       175 FVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ||-|.+..+...+|+..+|.+++      ++.|.|.|-+-|
T Consensus       147 FIeye~erdm~~AYK~adG~~Id------grri~VDvERgR  181 (335)
T KOG0113|consen  147 FIEYEHERDMKAAYKDADGIKID------GRRILVDVERGR  181 (335)
T ss_pred             EEEeccHHHHHHHHHhccCceec------CcEEEEEecccc
Confidence            99999999999999999999996      567888876543

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=98.23  E-value=6.3e-06  Score=80.06  Aligned_cols=84  Identities=20%  Similarity=0.243  Sum_probs=69.6

Q ss_pred             cccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791          109 YGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW  188 (295)
Q Consensus       109 ~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~  188 (295)
                      ..++.|.--.|.|.|||=+|.+-||+.+|.+             +|++=-  +=|=|+.+-++||+||.|.+++||+++.
T Consensus        89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~k-------------fG~Vld--VEIIfNERGSKGFGFVTmen~~dadRAR  153 (376)
T KOG0125|consen   89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEK-------------FGKVLD--VEIIFNERGSKGFGFVTMENPADADRAR  153 (376)
T ss_pred             cCCCCCCCceeEeecCCccccCccHHHHHHh-------------hCceee--EEEEeccCCCCccceEEecChhhHHHHH
Confidence            3445677778999999999999999999998             454433  3455778889999999999999999999


Q ss_pred             HHhcCCcccccCCCCCceEEEEecc
Q 037791          189 KACNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       189 ~~fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      ++|||-..+      +.++||.-|+
T Consensus       154 a~LHgt~VE------GRkIEVn~AT  172 (376)
T KOG0125|consen  154 AELHGTVVE------GRKIEVNNAT  172 (376)
T ss_pred             HHhhcceee------ceEEEEeccc
Confidence            999999886      4578887765

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=98.11  E-value=1.6e-05  Score=79.69  Aligned_cols=92  Identities=17%  Similarity=0.201  Sum_probs=77.7

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      -+|.|+|||-.++++.|.++|.+             .|..=-+-|..|..|+...||||+.|++.+++.++++.+||..+
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~-------------~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~   85 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSG-------------VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF   85 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhc-------------cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc
Confidence            68999999999999999999997             56677788889999999999999999999999999999999988


Q ss_pred             cccCCCCCceEEEEeccCcChHHHHHHhccc
Q 037791          197 EVEAPGNKKMCEIACADIQGRDALEKHFERF  227 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQGk~aLv~hFrnS  227 (295)
                      .      ...++|.||.-=--.....-+.++
T Consensus        86 ~------gr~l~v~~~~~~~~~~~~~~~~~~  110 (435)
T KOG0108|consen   86 N------GRKLRVNYASNRKNAERSLASHNA  110 (435)
T ss_pred             C------CceEEeecccccchhHHHHhhccc
Confidence            5      457999998754333444444444

>PLN03121 nucleic acid binding protein; Provisional

Probab=98.01  E-value=2.8e-05  Score=72.75  Aligned_cols=77  Identities=10%  Similarity=0.090  Sum_probs=64.0

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      .||.|.||+.+.|+++|+++|..             .|++..++|+.|-.+   .|+|||.|.++++|..++ .+||..+
T Consensus         6 ~TV~V~NLS~~tTE~dLrefFS~-------------~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAl-lLnGa~l   68 (243)
T PLN03121          6 YTAEVTNLSPKATEKDVYDFFSH-------------CGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAV-LLSGATI   68 (243)
T ss_pred             eEEEEecCCCCCCHHHHHHHHHh-------------cCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHH-hcCCCee
Confidence            69999999999999999999996             799999999999544   389999999999998877 8999998


Q ss_pred             cccCCCCCceEEEEeccCc
Q 037791          197 EVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQ  215 (295)
                      ..     ..|+...|-.+|
T Consensus        69 ~d-----~~I~It~~~~y~   82 (243)
T PLN03121         69 VD-----QRVCITRWGQYE   82 (243)
T ss_pred             CC-----ceEEEEeCcccc
Confidence            63     335554444444

>PLN03213 repressor of silencing 3; Provisional

Probab=98.01  E-value=2.6e-05  Score=79.45  Aligned_cols=90  Identities=17%  Similarity=0.329  Sum_probs=75.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCH--HHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTA--AGALRFWKA  190 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~sp--edA~~F~~~  190 (295)
                      ....++|.|-||+...|+++|.++|.+             +|...-++||.+  ++  +|||||+|.+.  ..+.+++..
T Consensus         7 ~~~gMRIYVGNLSydVTEDDLravFSe-------------FGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISa   69 (759)
T PLN03213          7 GGGGVRLHVGGLGESVGRDDLLKIFSP-------------MGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFST   69 (759)
T ss_pred             CCcceEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHH
Confidence            344689999999999999999999998             789999999933  44  99999999988  789999999


Q ss_pred             hcCCcccccCCCCCceEEEEeccCcChHHHHHHhc
Q 037791          191 CNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFE  225 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFr  225 (295)
                      +||..|.      +..+.|.=|+.--++-|.+-.+
T Consensus        70 LNGAEWK------GR~LKVNKAKP~YLeRLkrERe   98 (759)
T PLN03213         70 YNGCVWK------GGRLRLEKAKEHYLARLKREWE   98 (759)
T ss_pred             hcCCeec------CceeEEeeccHHHHHHHHHHHH
Confidence            9999997      3378899898766665554444

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=2e-05  Score=75.17  Aligned_cols=86  Identities=20%  Similarity=0.288  Sum_probs=71.7

Q ss_pred             cccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHH
Q 037791          107 DVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALR  186 (295)
Q Consensus       107 ~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~  186 (295)
                      ++|..+..+.|||++-||++-+|+++|++.|+.             +|.+-=+-+   |+.   .|||||.|.+.|+|..
T Consensus       155 eV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-------------fG~I~EVRv---Fk~---qGYaFVrF~tkEaAah  215 (321)
T KOG0148|consen  155 EVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-------------FGPIQEVRV---FKD---QGYAFVRFETKEAAAH  215 (321)
T ss_pred             HHhccCCCCCceEEeCCcCccccHHHHHHhccc-------------CCcceEEEE---ecc---cceEEEEecchhhHHH
Confidence            467778899999999999999999999999998             566654443   332   5999999999999999


Q ss_pred             HHHHhcCCcccccCCCCCceEEEEeccCcCh
Q 037791          187 FWKACNKYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       187 F~~~fnG~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      ++-.+||....      .-+...+|.+-++-
T Consensus       216 AIv~mNntei~------G~~VkCsWGKe~~~  240 (321)
T KOG0148|consen  216 AIVQMNNTEIG------GQLVRCSWGKEGDD  240 (321)
T ss_pred             HHHHhcCceeC------ceEEEEeccccCCC
Confidence            99999999885      44778889887764

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=97.95  E-value=4.9e-05  Score=72.49  Aligned_cols=102  Identities=16%  Similarity=0.229  Sum_probs=86.0

Q ss_pred             CCCCCCCcccccccccccCCccCCcccccccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhh
Q 037791           66 VVPPYNNDNVKAKVAVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEY  145 (295)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en  145 (295)
                      --.|++.+.+..-+++++|.+.-+                          -=-|.|=||-.+-++.-|-++|..      
T Consensus       254 rfsP~~~d~m~~l~~~~lp~~~~~--------------------------g~ciFvYNLspd~de~~LWQlFgp------  301 (360)
T KOG0145|consen  254 RFSPMTIDGMSGLAGVNLPGGPGG--------------------------GWCIFVYNLSPDADESILWQLFGP------  301 (360)
T ss_pred             cCCCccccccceeeeeccCCCCCC--------------------------eeEEEEEecCCCchHhHHHHHhCc------
Confidence            345677777777777777766311                          126889999999999999999987      


Q ss_pred             hcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEec
Q 037791          146 LKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       146 ~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyA  212 (295)
                             +|...-+-+-.||.|...+||+||.+++-+.|..++..+||+++.      +|+++|+|-
T Consensus       302 -------FGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg------~rvLQVsFK  355 (360)
T KOG0145|consen  302 -------FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG------DRVLQVSFK  355 (360)
T ss_pred             -------ccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc------ceEEEEEEe
Confidence                   788899999999999999999999999999999999999999985      779999984

>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]

Probab=97.93  E-value=2.7e-05  Score=70.30  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...|.|+|-||+++.+..+|..+|..             +|..--+.+...     .-|||||.|.++.||++++..++|
T Consensus         8 ~~~~kVYVGnL~~~a~k~eLE~~F~~-------------yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG   69 (195)
T KOG0107|consen    8 NGNTKVYVGNLGSRATKRELERAFSK-------------YGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDG   69 (195)
T ss_pred             CCCceEEeccCCCCcchHHHHHHHHh-------------cCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCC
Confidence            44789999999999999999999987             666666666443     349999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..+..    +  .+.|+..+-+.
T Consensus        70 ~~~cG----~--r~rVE~S~G~~   86 (195)
T KOG0107|consen   70 KDICG----S--RIRVELSTGRP   86 (195)
T ss_pred             ccccC----c--eEEEEeecCCc
Confidence            98862    3  34555555443

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=97.93  E-value=2.1e-05  Score=71.29  Aligned_cols=84  Identities=20%  Similarity=0.211  Sum_probs=71.1

Q ss_pred             cCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          111 AMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       111 ~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      +.++.-.||.|-||+.++|++.|-+++-.             .|..=-+++|.|..++...|||||.|.+.|+|.=+++.
T Consensus         4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iq-------------agpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAiki   70 (203)
T KOG0131|consen    4 IERNQDATLYVGNLDEKVSEELLYELFIQ-------------AGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKI   70 (203)
T ss_pred             cccCCCceEEEecCCHHHHHHHHHHHHHh-------------cCceeeeecchhhhcccccceeEEEEechhhhHHHHHH
Confidence            35667789999999999999999999987             56677799999999999999999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEecc
Q 037791          191 CNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      ||+.++=      +|.+.|.=|.
T Consensus        71 ln~VkLY------grpIrv~kas   87 (203)
T KOG0131|consen   71 LNMVKLY------GRPIRVNKAS   87 (203)
T ss_pred             HHHHHhc------CceeEEEecc
Confidence            9976653      4455555444

>PF13893 RRM_5: RNA recognition motif

Probab=97.92  E-value=4.4e-05  Score=54.03  Aligned_cols=49  Identities=18%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             CCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEec
Q 037791          153 KSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       153 ~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyA  212 (295)
                      +|.+.-+.+..+.     .|+|||.|.+.++|..+++.+||..|.      ++.+.|+||
T Consensus         8 fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~------g~~l~V~~a   56 (56)
T PF13893_consen    8 FGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFN------GRPLKVSYA   56 (56)
T ss_dssp             TS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEET------TEEEEEEEE
T ss_pred             cccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC------CcEEEEEEC
Confidence            6777766664332     599999999999999999999999985      568999997

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=97.91  E-value=3.1e-05  Score=79.41  Aligned_cols=78  Identities=23%  Similarity=0.319  Sum_probs=70.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      +-.|+|||||=+....+|..+|..             +|.+-=+.+|..+.++.. |||||.|++..+|..+++.|||+.
T Consensus       117 k~rLIIRNLPf~~k~~dLk~vFs~-------------~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~  182 (678)
T KOG0127|consen  117 KWRLIIRNLPFKCKKPDLKNVFSN-------------FGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNK  182 (678)
T ss_pred             cceEEeecCCcccCcHHHHHHHhh-------------cceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCce
Confidence            779999999999999999999997             788888999988887776 999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      +.      +..+.|.||-
T Consensus       183 i~------gR~VAVDWAV  194 (678)
T KOG0127|consen  183 ID------GRPVAVDWAV  194 (678)
T ss_pred             ec------CceeEEeeec
Confidence            96      3467889985

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=3.4e-05  Score=73.64  Aligned_cols=131  Identities=16%  Similarity=0.132  Sum_probs=92.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhccc-----------------------------------------C-
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSK-----------------------------------------W-  150 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~-----------------------------------------~-  150 (295)
                      .|.--||.|-||-..+|++-|..+|+.++...++|.+                                         + 
T Consensus         3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~a   82 (321)
T KOG0148|consen    3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREA   82 (321)
T ss_pred             CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHH
Confidence            3444599999999999999999999999887777642                                         0 


Q ss_pred             -ccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccccc-------------------------CCCCC
Q 037791          151 -HCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVE-------------------------APGNK  204 (295)
Q Consensus       151 -~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~-------------------------~~gS~  204 (295)
                       ..+|++.-.-+..|-.|+.++||+||.|.+.++|+.+++.+||+.+..-                         +..|-
T Consensus        83 F~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp  162 (321)
T KOG0148|consen   83 FAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSP  162 (321)
T ss_pred             hccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCC
Confidence             0256666667778889999999999999999999999999999876421                         11344


Q ss_pred             ceEEEEeccCcC-h--HHHHHHhcc-ccccc----CCCCccceeeeC
Q 037791          205 KMCEIACADIQG-R--DALEKHFER-FKFYC----HTDGYLPVILSP  243 (295)
Q Consensus       205 KiceVsyAriQG-k--~aLv~hFrn-S~v~~----~~~eyrP~iF~p  243 (295)
                      .-|.|...-|-+ +  +.|.++|.. ..|+.    .+..|-=|-|.+
T Consensus       163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~t  209 (321)
T KOG0148|consen  163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFET  209 (321)
T ss_pred             CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecc
Confidence            456666655433 3  455666654 33332    245566666665

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=97.85  E-value=1.8e-05  Score=80.68  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=72.8

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEV  198 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~  198 (295)
                      |.+.||=-.+|.+||+.+|+.             +|+++++-|++|-.|+.+.||+||.|.+.++|..|...+||..+..
T Consensus       281 l~vgnLHfNite~~lr~ifep-------------fg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG  347 (549)
T KOG0147|consen  281 LYVGNLHFNITEDMLRGIFEP-------------FGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAG  347 (549)
T ss_pred             hhhcccccCchHHHHhhhccC-------------cccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecC
Confidence            889999999999999999997             8999999999999999999999999999999999999999976654


Q ss_pred             cCCCCCceEEEEeccCcC
Q 037791          199 EAPGNKKMCEIACADIQG  216 (295)
Q Consensus       199 ~~~gS~KiceVsyAriQG  216 (295)
                      .   .-||+.|.+---|.
T Consensus       348 r---~ikV~~v~~r~~~~  362 (549)
T KOG0147|consen  348 R---LIKVSVVTERVDTK  362 (549)
T ss_pred             c---eEEEEEeeeecccc
Confidence            4   46788887754443

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=97.83  E-value=6.6e-05  Score=75.26  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=72.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      --.+.|--||..+++.||+++|++             +|..+-+-|+.|..|+...||+||.|.+.++|.+++.++|+.+
T Consensus        34 ~vKlfVgqIprt~sE~dlr~lFe~-------------yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~k  100 (510)
T KOG0144|consen   34 AVKLFVGQIPRTASEKDLRELFEK-------------YGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQK  100 (510)
T ss_pred             hhhheeccCCccccHHHHHHHHHH-------------hCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccc
Confidence            447889999999999999999998             6788999999999999999999999999999999999999975


Q ss_pred             ccccCCCCCceEEEEeccC
Q 037791          196 WEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAri  214 (295)
                      --   +|-.--++|.||.-
T Consensus       101 tl---pG~~~pvqvk~Ad~  116 (510)
T KOG0144|consen  101 TL---PGMHHPVQVKYADG  116 (510)
T ss_pred             cc---CCCCcceeecccch
Confidence            42   24455788888863

>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]

Probab=97.72  E-value=0.0001  Score=67.77  Aligned_cols=84  Identities=18%  Similarity=0.247  Sum_probs=72.2

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+-+.|..||.-+-+..++..|.+.            .|..--+-|-...+||.++|||||-|.+.+.|.-+.+.|||
T Consensus        47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~------------~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNN  114 (214)
T KOG4208|consen   47 EIEGVVYVDHIPHGFFETEILNYFRQF------------GGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNN  114 (214)
T ss_pred             CCccceeecccccchhHHHHhhhhhhc------------CCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhh
Confidence            346678999999999999999999873            58888888989999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.+-      ++.+++.|=..-
T Consensus       115 YLl~------e~lL~c~vmppe  130 (214)
T KOG4208|consen  115 YLLM------EHLLECHVMPPE  130 (214)
T ss_pred             hhhh------hheeeeEEeCch
Confidence            9874      456676665543

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.71  E-value=0.00013  Score=71.57  Aligned_cols=55  Identities=13%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             CCCccEEEeccc---ccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEecc
Q 037791          153 KSEFDFLYLPMD---FRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       153 ~G~YDFlYLPiD---f~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      +|.+..+.||.+   ..++.++|+|||.|.+.++|..+++.|||..+.      ++++.|+|..
T Consensus       443 ~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~------gr~v~~~~~~  500 (509)
T TIGR01642       443 YGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN------DRVVVAAFYG  500 (509)
T ss_pred             cCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC------CeEEEEEEeC
Confidence            788999999875   345677899999999999999999999999984      5678888865

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00013  Score=71.60  Aligned_cols=66  Identities=23%  Similarity=0.230  Sum_probs=58.8

Q ss_pred             CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCc
Q 037791          126 NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKK  205 (295)
Q Consensus       126 Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~K  205 (295)
                      .+.|..+|.++|..             .|..-.+-|=.|. |  ++|||||||.++++|.++++++|...+.      +|
T Consensus         8 ~~v~e~~l~~~f~~-------------~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~------~~   65 (369)
T KOG0123|consen    8 PDVTEAMLFDKFSP-------------AGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK------GK   65 (369)
T ss_pred             CcCChHHHHHHhcc-------------cCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC------Cc
Confidence            78899999999997             6788888899999 7  9999999999999999999999988774      67


Q ss_pred             eEEEEecc
Q 037791          206 MCEIACAD  213 (295)
Q Consensus       206 iceVsyAr  213 (295)
                      .+.|.|+.
T Consensus        66 ~~rim~s~   73 (369)
T KOG0123|consen   66 PIRIMWSQ   73 (369)
T ss_pred             EEEeehhc
Confidence            88888864

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=97.63  E-value=9.7e-05  Score=68.30  Aligned_cols=78  Identities=26%  Similarity=0.275  Sum_probs=66.3

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      ||+|+||..++--++|+..|-..            ++.|+=+-=-.-+++..-+|=|||.|.+.+.|-.+...++|..+=
T Consensus        11 TlYInnLnekI~~~elkrsL~~L------------FsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy   78 (221)
T KOG4206|consen   11 TLYINNLNEKIKKDELKRSLYLL------------FSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY   78 (221)
T ss_pred             eEeehhccccccHHHHHHHHHHH------------HHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc
Confidence            99999999999999999966542            555654444455788899999999999999999999999999873


Q ss_pred             ccCCCCCceEEEEecc
Q 037791          198 VEAPGNKKMCEIACAD  213 (295)
Q Consensus       198 ~~~~gS~KiceVsyAr  213 (295)
                            +|...|.||+
T Consensus        79 ------gK~mriqyA~   88 (221)
T KOG4206|consen   79 ------GKPMRIQYAK   88 (221)
T ss_pred             ------Cchhheeccc
Confidence                  7899999997

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=97.57  E-value=0.00018  Score=73.97  Aligned_cols=85  Identities=20%  Similarity=0.278  Sum_probs=70.6

Q ss_pred             ccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791          110 GAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK  189 (295)
Q Consensus       110 ~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~  189 (295)
                      ++..+.--||.|||||-+.|.++|.+.|..             +|+.+|+-|.+|..|+.+.|-|||.|.++.++..-+.
T Consensus       286 ~en~~~~~tVFvRNL~fD~tEEel~~~fsk-------------FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~  352 (678)
T KOG0127|consen  286 RENITEGKTVFVRNLPFDTTEEELKEHFSK-------------FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE  352 (678)
T ss_pred             cccccccceEEEecCCccccHHHHHHHHHh-------------hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence            444555669999999999999999999998             8999999999999999999999999999999998888


Q ss_pred             Hhc-----C-CcccccCCCCCceEEEEecc
Q 037791          190 ACN-----K-YKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       190 ~fn-----G-~~w~~~~~gS~KiceVsyAr  213 (295)
                      ...     | ..+      .+..+.|.-|-
T Consensus       353 ~Aspa~e~g~~ll------~GR~Lkv~~Av  376 (678)
T KOG0127|consen  353 AASPASEDGSVLL------DGRLLKVTLAV  376 (678)
T ss_pred             hcCccCCCceEEE------eccEEeeeecc
Confidence            762     2 222      24467777664

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=97.50  E-value=0.00017  Score=67.37  Aligned_cols=66  Identities=21%  Similarity=0.235  Sum_probs=60.3

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...|.|.|-+||=..+.+.|++.|+.             +|++--.-+--|..|+.++||+||.|.|.++|.++.+.-|
T Consensus        10 T~~TKifVggL~w~T~~~~l~~yFeq-------------fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~   75 (247)
T KOG0149|consen   10 TTFTKIFVGGLAWETHKETLRRYFEQ-------------FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN   75 (247)
T ss_pred             ceEEEEEEcCcccccchHHHHHHHHH-------------hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence            35799999999999999999999998             7888888899999999999999999999999999988543

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=97.44  E-value=0.00018  Score=72.25  Aligned_cols=83  Identities=22%  Similarity=0.221  Sum_probs=73.3

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .|.|+-|+.+.|+.++++||..             +|.+.-+|+-.|.. +.++|||||.|++.+.|..+++.+||..--
T Consensus       126 KLFvg~lsK~~te~evr~iFs~-------------fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tm  191 (510)
T KOG0144|consen  126 KLFVGMLSKQCTENEVREIFSR-------------FGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTM  191 (510)
T ss_pred             hhhhhhccccccHHHHHHHHHh-------------hCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceee
Confidence            7899999999999999999998             78888899988876 678899999999999999999999997543


Q ss_pred             ccCCCCCceEEEEeccCcCh
Q 037791          198 VEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       198 ~~~~gS~KiceVsyAriQGk  217 (295)
                         .|+.--+.|.||..|.-
T Consensus       192 ---eGcs~PLVVkFADtqkd  208 (510)
T KOG0144|consen  192 ---EGCSQPLVVKFADTQKD  208 (510)
T ss_pred             ---ccCCCceEEEecccCCC
Confidence               25777899999998863

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=97.35  E-value=0.00085  Score=71.24  Aligned_cols=79  Identities=24%  Similarity=0.332  Sum_probs=69.9

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -|||-|.-||.+++|.+|.++|++             +|++..+-|      .-|+|-|||.+.+.++|.++.+.|++++
T Consensus       421 SrTLwvG~i~k~v~e~dL~~~fee-------------fGeiqSi~l------i~~R~cAfI~M~~RqdA~kalqkl~n~k  481 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVTEQDLANLFEE-------------FGEIQSIIL------IPPRGCAFIKMVRRQDAEKALQKLSNVK  481 (894)
T ss_pred             eeeeeeccccchhhHHHHHHHHHh-------------cccceeEee------ccCCceeEEEEeehhHHHHHHHHHhccc
Confidence            589999999999999999999998             677777765      4578999999999999999999999888


Q ss_pred             ccccCCCCCceEEEEeccCcChHH
Q 037791          196 WEVEAPGNKKMCEIACADIQGRDA  219 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQGk~a  219 (295)
                      ..      +|.+.|.||.-=|..+
T Consensus       482 v~------~k~Iki~Wa~g~G~ks  499 (894)
T KOG0132|consen  482 VA------DKTIKIAWAVGKGPKS  499 (894)
T ss_pred             cc------ceeeEEeeeccCCcch
Confidence            74      7899999999877654

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0002  Score=67.04  Aligned_cols=83  Identities=16%  Similarity=0.285  Sum_probs=73.2

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .+-||+|--+-...|+.-|.+.|=.             +|.+--+-+|+|..++..+|||||.|...|||..+++-+|+.
T Consensus         9 ~KrtlYVGGladeVtekvLhaAFIP-------------FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes   75 (298)
T KOG0111|consen    9 QKRTLYVGGLADEVTEKVLHAAFIP-------------FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES   75 (298)
T ss_pred             cceeEEeccchHHHHHHHHHhcccc-------------ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh
Confidence            3458999999988988888877754             888999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+-      .+++.|.||++-.
T Consensus        76 EL~------GrtirVN~AkP~k   91 (298)
T KOG0111|consen   76 ELF------GRTIRVNLAKPEK   91 (298)
T ss_pred             hhc------ceeEEEeecCCcc
Confidence            873      6799999998643

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=97.31  E-value=0.00057  Score=69.01  Aligned_cols=74  Identities=15%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .-++|.|||+|-+||-++|++-|.+             .|..+|.  =| -.++..+|  -|.|.++++|+++...+||.
T Consensus       535 Ka~qIiirNlP~dfTWqmlrDKfre-------------~G~v~ya--di-me~GkskG--VVrF~s~edAEra~a~Mngs  596 (608)
T KOG4212|consen  535 KACQIIIRNLPFDFTWQMLRDKFRE-------------IGHVLYA--DI-MENGKSKG--VVRFFSPEDAERACALMNGS  596 (608)
T ss_pred             cccEEEEecCCccccHHHHHHHHHh-------------ccceehh--hh-hccCCccc--eEEecCHHHHHHHHHHhccC
Confidence            4578999999999999999999998             4544444  34 45677888  89999999999999999999


Q ss_pred             cccccCCCCCceEEEEec
Q 037791          195 KWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyA  212 (295)
                      +++      ...+.|.|+
T Consensus       597 ~l~------Gr~I~V~y~  608 (608)
T KOG4212|consen  597 RLD------GRNIKVTYF  608 (608)
T ss_pred             ccc------CceeeeeeC
Confidence            986      446788874

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.00028  Score=69.19  Aligned_cols=71  Identities=15%  Similarity=0.242  Sum_probs=65.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...-|+++++|.+.+.++++|++.|+.             .|+..++-++.|-.++ +.||+||+|.++++|..+++.+|
T Consensus       164 ~~~~t~v~vk~~~~~~~~~~l~~~f~~-------------~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~l~  229 (369)
T KOG0123|consen  164 KKRFTNVYVKNLEEDSTDEELKDLFSA-------------YGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVETLN  229 (369)
T ss_pred             hhhhhhhheeccccccchHHHHHhhcc-------------cCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHhcc
Confidence            344789999999999999999999998             8999999999987766 99999999999999999999999


Q ss_pred             CCccc
Q 037791          193 KYKWE  197 (295)
Q Consensus       193 G~~w~  197 (295)
                      |....
T Consensus       230 ~~~~~  234 (369)
T KOG0123|consen  230 GKIFG  234 (369)
T ss_pred             CCcCC
Confidence            99886

>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]

Probab=97.23  E-value=0.00024  Score=70.08  Aligned_cols=75  Identities=16%  Similarity=0.370  Sum_probs=61.2

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEec-ccccCC-cceeeEEEecCCHHHHHHHHHHh
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLP-MDFRRR-ANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLP-iDf~t~-~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      +....|.||++|++++++.|++.|+..            ...+.|.|.. -|+... +-++.|||||..++++..|.+.|
T Consensus         5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~------------~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f   72 (376)
T KOG1295|consen    5 EAKVKVVVRRLPPKLTEEQLLEQINPF------------PEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRF   72 (376)
T ss_pred             ccceeeeeecCCCcccHHHHhhhcCCC------------ccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhC
Confidence            345689999999999999999999983            5667777655 444433 23699999999999999999999


Q ss_pred             cCCcccccC
Q 037791          192 NKYKWEVEA  200 (295)
Q Consensus       192 nG~~w~~~~  200 (295)
                      +|+.+-...
T Consensus        73 ~g~ifld~K   81 (376)
T KOG1295|consen   73 DGYIFLDNK   81 (376)
T ss_pred             CceEEecCC
Confidence            999998655

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=97.19  E-value=0.0014  Score=55.35  Aligned_cols=70  Identities=17%  Similarity=0.264  Sum_probs=56.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..--|.|||||-++|.+++.++|.+             +|.+-=+-+=-   +..-.|-|||-+.+..||.++.+.++
T Consensus        15 pevnriLyirNLp~~ITseemydlFGk-------------yg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhls   78 (124)
T KOG0114|consen   15 PEVNRILYIRNLPFKITSEEMYDLFGK-------------YGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLS   78 (124)
T ss_pred             hhhheeEEEecCCccccHHHHHHHhhc-------------ccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhc
Confidence            444557999999999999999999987             55554443322   34456999999999999999999999


Q ss_pred             CCcccc
Q 037791          193 KYKWEV  198 (295)
Q Consensus       193 G~~w~~  198 (295)
                      |+...+
T Consensus        79 g~n~~~   84 (124)
T KOG0114|consen   79 GYNVDN   84 (124)
T ss_pred             ccccCC
Confidence            998764

>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]

Probab=97.15  E-value=0.0022  Score=64.99  Aligned_cols=67  Identities=24%  Similarity=0.406  Sum_probs=62.9

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .|.|.|||-+|.-++|++++.+.            .|+..|+-|-+|- ++..+|-|-|.|+++|.++++.+.+|.+.|.
T Consensus        46 ~vfItNIpyd~rWqdLKdLvrek------------vGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~  112 (608)
T KOG4212|consen   46 SVFITNIPYDYRWQDLKDLVREK------------VGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVN  112 (608)
T ss_pred             eEEEecCcchhhhHhHHHHHHHh------------cCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhcccc
Confidence            49999999999999999999985            7999999999996 5788999999999999999999999999996

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=97.10  E-value=0.00052  Score=72.04  Aligned_cols=80  Identities=21%  Similarity=0.365  Sum_probs=69.4

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -|.|.|||||-.-+-.+++.||..             +|.+=.+-||.-+.....+|||||.|.++++|..++++|.+-+
T Consensus       613 ~tKIlVRNipFeAt~rEVr~LF~a-------------FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STH  679 (725)
T KOG0110|consen  613 GTKILVRNIPFEATKREVRKLFTA-------------FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTH  679 (725)
T ss_pred             cceeeeeccchHHHHHHHHHHHhc-------------ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccc
Confidence            589999999999999999999987             7888889999987778889999999999999999999998655


Q ss_pred             ccccCCCCCceEEEEeccC
Q 037791          196 WEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAri  214 (295)
                      +=      +..+.++||.-
T Consensus       680 ly------GRrLVLEwA~~  692 (725)
T KOG0110|consen  680 LY------GRRLVLEWAKS  692 (725)
T ss_pred             ee------chhhheehhcc
Confidence            42      33567789874

>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]

Probab=97.01  E-value=0.0012  Score=60.70  Aligned_cols=76  Identities=13%  Similarity=0.258  Sum_probs=63.2

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCc-ceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA-NLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~-N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+|.|-|||.++.+.++.++|-+             +|.+-++-|    ++.- ...||||.|.++.||++++..-+|+-
T Consensus         7 ~~iyvGNLP~diRekeieDlFyK-------------yg~i~~ieL----K~r~g~ppfafVeFEd~RDAeDAiygRdGYd   69 (241)
T KOG0105|consen    7 RRIYVGNLPGDIREKEIEDLFYK-------------YGRIREIEL----KNRPGPPPFAFVEFEDPRDAEDAIYGRDGYD   69 (241)
T ss_pred             ceEEecCCCcchhhccHHHHHhh-------------hcceEEEEe----ccCCCCCCeeEEEecCccchhhhhhcccccc
Confidence            48999999999999999999987             677776655    4333 36899999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      ++..      .+.|++|+--
T Consensus        70 ydg~------rLRVEfprgg   83 (241)
T KOG0105|consen   70 YDGC------RLRVEFPRGG   83 (241)
T ss_pred             cCcc------eEEEEeccCC
Confidence            8743      5788888743

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=96.96  E-value=0.0015  Score=62.70  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             ccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791          110 GAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK  189 (295)
Q Consensus       110 ~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~  189 (295)
                      +++.|+ .+|.|=+||..+++.+|+++|-.             +|.+-.--+=+|-.|..++.|+||.|-++..+..+++
T Consensus       280 reGPeG-CNlFIYHLPQEFgDaEliQmF~P-------------FGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIq  345 (371)
T KOG0146|consen  280 REGPEG-CNLFIYHLPQEFGDAELIQMFLP-------------FGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQ  345 (371)
T ss_pred             hcCCCc-ceEEEEeCchhhccHHHHHHhcc-------------ccceeeeeeeehhccccccceeeEecCCchhHHHHHH
Confidence            344444 69999999999999999999987             6667677777899999999999999999999999999


Q ss_pred             HhcCCccc
Q 037791          190 ACNKYKWE  197 (295)
Q Consensus       190 ~fnG~~w~  197 (295)
                      ++||+.+.
T Consensus       346 AMNGFQIG  353 (371)
T KOG0146|consen  346 AMNGFQIG  353 (371)
T ss_pred             Hhcchhhh
Confidence            99999885

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=96.84  E-value=0.0043  Score=54.12  Aligned_cols=81  Identities=11%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      +-.-+||.|-||.-..|++.+-++|..             .|.+--+-+=.|-.+.-.-||+||.|-+.++|..+.+-.+
T Consensus        33 ~r~S~tvyVgNlSfyttEEqiyELFs~-------------cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis   99 (153)
T KOG0121|consen   33 LRKSCTVYVGNLSFYTTEEQIYELFSK-------------CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS   99 (153)
T ss_pred             HhhcceEEEeeeeeeecHHHHHHHHHh-------------ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc
Confidence            455789999999999999999999997             5777788888888888888999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEec
Q 037791          193 KYKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyA  212 (295)
                      |.+++      ++++.|.|-
T Consensus       100 gtrLd------dr~ir~D~D  113 (153)
T KOG0121|consen  100 GTRLD------DRPIRIDWD  113 (153)
T ss_pred             cCccc------ccceeeecc
Confidence            99996      557888773

>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]

Probab=96.55  E-value=0.0093  Score=56.02  Aligned_cols=71  Identities=24%  Similarity=0.278  Sum_probs=56.8

Q ss_pred             CCCc-cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGEN-TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~R-TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .+.+ |+|+|-|+|..++++||+++|.+.             +..--+-|=.| .++.+.|-|=|.|...+||+++++.|
T Consensus        79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~-------------~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~  144 (243)
T KOG0533|consen   79 NETRSTKVNVSNLPYGVIDADLKELFAEF-------------GELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKY  144 (243)
T ss_pred             cCCCcceeeeecCCcCcchHHHHHHHHHh-------------ccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHh
Confidence            4555 999999999999999999999984             22222222233 35778899999999999999999999


Q ss_pred             cCCccc
Q 037791          192 NKYKWE  197 (295)
Q Consensus       192 nG~~w~  197 (295)
                      ||..++
T Consensus       145 ~gv~ld  150 (243)
T KOG0533|consen  145 NGVALD  150 (243)
T ss_pred             cCcccC
Confidence            997765

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=96.38  E-value=0.00044  Score=63.12  Aligned_cols=69  Identities=19%  Similarity=0.263  Sum_probs=64.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -.=|.|-|||-.+|+.||+-.|.+             +|++--+-|-.|..|+.+.||||.-+.+....+-+++-|||.+
T Consensus        35 sA~Iyiggl~~~LtEgDil~VFSq-------------yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGik  101 (219)
T KOG0126|consen   35 SAYIYIGGLPYELTEGDILCVFSQ-------------YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIK  101 (219)
T ss_pred             ceEEEECCCcccccCCcEEEEeec-------------cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCce
Confidence            557999999999999999999988             7888889999999999999999999999999999999999998


Q ss_pred             cc
Q 037791          196 WE  197 (295)
Q Consensus       196 w~  197 (295)
                      .-
T Consensus       102 i~  103 (219)
T KOG0126|consen  102 IL  103 (219)
T ss_pred             ec
Confidence            85

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=96.13  E-value=0.004  Score=60.28  Aligned_cols=91  Identities=15%  Similarity=0.284  Sum_probs=71.9

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .|-|-|+|.+.+..+|+.+|+..|....+          |-+           +-||||...+..+++++++-+||+++.
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~ygkVlEC----------DIv-----------KNYgFVHiEdktaaedairNLhgYtLh   62 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYGKVLEC----------DIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLH   62 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhCceEee----------eee-----------cccceEEeecccccHHHHhhcccceec
Confidence            46789999999999999999997653321          222           359999999999999999999999985


Q ss_pred             ccCCCCCceEEEEeccCcChHHHHHHhcccccccCCCC
Q 037791          198 VEAPGNKKMCEIACADIQGRDALEKHFERFKFYCHTDG  235 (295)
Q Consensus       198 ~~~~gS~KiceVsyAriQGk~aLv~hFrnS~v~~~~~e  235 (295)
                            ++.+.|+-++--.+....-|..|-+..|..+|
T Consensus        63 ------g~nInVeaSksKsk~stkl~vgNis~tctn~E   94 (346)
T KOG0109|consen   63 ------GVNINVEASKSKSKASTKLHVGNISPTCTNQE   94 (346)
T ss_pred             ------ceEEEEEeccccCCCccccccCCCCccccCHH
Confidence                  56788998877666666667777777776555

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=96.07  E-value=0.017  Score=51.03  Aligned_cols=82  Identities=17%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      -|.|.+|=..-|++++-+.|..             +|++-=+-|-.|-.|+--+|||.|.+.+.+.|..+++.+||..+-
T Consensus        74 Ii~VtgvHeEatEedi~d~F~d-------------yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll  140 (170)
T KOG0130|consen   74 IIFVTGVHEEATEEDIHDKFAD-------------YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL  140 (170)
T ss_pred             EEEEeccCcchhHHHHHHHHhh-------------cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh
Confidence            5789999999999999998887             788888999999999999999999999999999999999998875


Q ss_pred             ccCCCCCceEEEEeccCcChH
Q 037791          198 VEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       198 ~~~~gS~KiceVsyAriQGk~  218 (295)
                      .      ..++|.|+=+-|.+
T Consensus       141 ~------q~v~VDw~Fv~gp~  155 (170)
T KOG0130|consen  141 G------QNVSVDWCFVKGPE  155 (170)
T ss_pred             C------CceeEEEEEecCCc
Confidence            2      35789998777653

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=95.95  E-value=0.068  Score=44.59  Aligned_cols=81  Identities=15%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      +|+|-|=-.|+.++-.+++..|.+.+           ...+.-+.+..|..  -|.-=+-|.|.+.++|..|++.|||+.
T Consensus        12 ~~~~~~l~vp~~~~~~d~l~~f~~~~-----------~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~   78 (110)
T PF07576_consen   12 RSTLCCLAVPPYMTPSDFLLFFGAPF-----------REDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKP   78 (110)
T ss_pred             CceEEEEEeCcccccHHHHHHhhhcc-----------cccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCc
Confidence            45555557777776665544444432           45566677777654  477788899999999999999999999


Q ss_pred             ccccCCCCCceEEEEec
Q 037791          196 WEVEAPGNKKMCEIACA  212 (295)
Q Consensus       196 w~~~~~gS~KiceVsyA  212 (295)
                      ++.+-   .-+|.|.|-
T Consensus        79 FnslE---pE~ChvvfV   92 (110)
T PF07576_consen   79 FNSLE---PETCHVVFV   92 (110)
T ss_pred             cCCCC---CceeEEEEE
Confidence            98774   458998874

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=95.91  E-value=0.021  Score=52.17  Aligned_cols=86  Identities=13%  Similarity=0.138  Sum_probs=67.1

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .++.-.++.|.|+-...++..|-++|...+..         ...-.-|+   |..|+...|+|||||.+-+++.+++..+
T Consensus        92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l---------~~~P~i~r---d~~tg~~~~~g~i~~~sfeasd~ai~s~  159 (203)
T KOG0131|consen   92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVL---------ISPPKIMR---DPDTGNPKGFGFINYASFEASDAAIGSM  159 (203)
T ss_pred             cccccccccccccCcchhHHHHHHHHHhcccc---------ccCCcccc---cccCCCCCCCeEEechhHHHHHHHHHHh
Confidence            35555789999999999999999999986532         12222333   3457788899999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCc
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ||+-..      .....|+||.--
T Consensus       160 ngq~l~------nr~itv~ya~k~  177 (203)
T KOG0131|consen  160 NGQYLC------NRPITVSYAFKK  177 (203)
T ss_pred             ccchhc------CCceEEEEEEec
Confidence            999875      336789998643

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=95.87  E-value=0.09  Score=49.74  Aligned_cols=88  Identities=22%  Similarity=0.299  Sum_probs=69.8

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCC-cceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRR-ANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~-~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      +.--||.|--||++..-.+|-.+|..             +.-|.-.-|.+--+.+ ...-.||+.|++.++|+.+...+|
T Consensus        32 ~~VRTLFVSGLP~DvKpREiynLFR~-------------f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN   98 (284)
T KOG1457|consen   32 GAVRTLFVSGLPNDVKPREIYNLFRR-------------FHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN   98 (284)
T ss_pred             cccceeeeccCCcccCHHHHHHHhcc-------------CCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc
Confidence            33448999999999999999999987             4456666676654432 334799999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |.+|+-..   .-++.|+.|+.--|
T Consensus        99 GvrFDpE~---~stLhiElAKSNtK  120 (284)
T KOG1457|consen   99 GVRFDPET---GSTLHIELAKSNTK  120 (284)
T ss_pred             Ceeecccc---CceeEeeehhcCcc
Confidence            99999765   44788888875443

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=95.81  E-value=0.01  Score=60.84  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=69.8

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+.--.+.|-+||+.+++..++++|++             +|.+--+-|-+|-.++.|.||||-+|+++-....++..+|
T Consensus       286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~-------------fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn  352 (500)
T KOG0120|consen  286 PDSPNKIFVGGLPLYLTEDQVKELLDS-------------FGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN  352 (500)
T ss_pred             ccccchhhhccCcCccCHHHHHHHHHh-------------cccchhheeecccccccccceeeeeeeCCcchhhhhcccc
Confidence            344456678899999999999999998             5666667777888889999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |.+.-      +|.+.|..|=.+..
T Consensus       353 Gm~lg------d~~lvvq~A~~g~~  371 (500)
T KOG0120|consen  353 GMQLG------DKKLVVQRAIVGAS  371 (500)
T ss_pred             hhhhc------CceeEeehhhccch
Confidence            99885      45566665544433

>KOG0226 consensus RNA-binding proteins [General function prediction only]

Probab=95.73  E-value=0.027  Score=53.80  Aligned_cols=67  Identities=19%  Similarity=0.239  Sum_probs=56.0

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .|.--.+-|..+.+.|-..|..             +-.|.---+-.|..|+.+.||+||.|.++.|+.++..++||+--.
T Consensus       192 RIfcgdlgNevnd~vl~raf~K-------------fpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg  258 (290)
T KOG0226|consen  192 RIFCGDLGNEVNDDVLARAFKK-------------FPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG  258 (290)
T ss_pred             eeecccccccccHHHHHHHHHh-------------ccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence            3444467888999999888887             445555677889999999999999999999999999999998654

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=95.66  E-value=0.028  Score=59.52  Aligned_cols=81  Identities=17%  Similarity=0.240  Sum_probs=61.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCc----ceeeEEEecCCHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA----NLGYAFVNFTTAAGALRFW  188 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~----N~GYAFVNF~spedA~~F~  188 (295)
                      .+.-|+|.|+|++-.-|+++|...|..             .|.+=.+-++.-.. .+    ++|||||-|.++++|..++
T Consensus       512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k-------------~G~VlS~~I~kkkd-~~~k~lSmGfgFVEF~~~e~A~~a~  577 (725)
T KOG0110|consen  512 EETETKLFVKNLNFDTTLEDLEDLFSK-------------QGTVLSIEISKKKD-PANKYLSMGFGFVEFAKPESAQAAL  577 (725)
T ss_pred             cccchhhhhhcCCcccchhHHHHHHHh-------------cCeEEEEEEecccc-ccccccccceeEEEecCHHHHHHHH
Confidence            455666999999999999999999986             45554444444322 33    4599999999999999999


Q ss_pred             HHhcCCcccccCCCCCceEEEEecc
Q 037791          189 KACNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       189 ~~fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      +.++|..++..      .++|.++.
T Consensus       578 k~lqgtvldGH------~l~lk~S~  596 (725)
T KOG0110|consen  578 KALQGTVLDGH------KLELKISE  596 (725)
T ss_pred             HHhcCceecCc------eEEEEecc
Confidence            99999998732      34555554

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=95.47  E-value=0.017  Score=57.65  Aligned_cols=72  Identities=14%  Similarity=0.161  Sum_probs=66.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..-..|+|-.|.-.+.+++|+..|+.             +|.+-.+.+-.|..|+..+|||||.|.-||+|.-+.+.+||
T Consensus       111 aiMcRvYVGSIsfEl~EDtiR~AF~P-------------FGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg  177 (544)
T KOG0124|consen  111 AIMCRVYVGSISFELREDTIRRAFDP-------------FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG  177 (544)
T ss_pred             HHhHheeeeeeEEEechHHHHhhccC-------------CCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc
Confidence            44567889999999999999999997             88999999999999999999999999999999999999999


Q ss_pred             Ccccc
Q 037791          194 YKWEV  198 (295)
Q Consensus       194 ~~w~~  198 (295)
                      ..+..
T Consensus       178 ~mlGG  182 (544)
T KOG0124|consen  178 QMLGG  182 (544)
T ss_pred             ccccC
Confidence            98863

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=95.32  E-value=0.055  Score=53.47  Aligned_cols=77  Identities=21%  Similarity=0.136  Sum_probs=60.8

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..-|||.|+++=+.+++.+|++-|-.             +|++.++-+-.      -.|-|||+|++.++|+.+.+..-+
T Consensus       226 ~~I~tLyIg~l~d~v~e~dIrdhFyq-------------yGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n  286 (377)
T KOG0153|consen  226 TSIKTLYIGGLNDEVLEQDIRDHFYQ-------------YGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFN  286 (377)
T ss_pred             cceeEEEecccccchhHHHHHHHHhh-------------cCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcc
Confidence            45789999999889999999999987             67777775432      236899999999999999887555


Q ss_pred             CcccccCCCCCceEEEEeccC
Q 037791          194 YKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAri  214 (295)
                        |-..   .++.+.|.|++.
T Consensus       287 --~lvI---~G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  287 --KLVI---NGFRLKIKWGRP  302 (377)
T ss_pred             --eeee---cceEEEEEeCCC
Confidence              3333   355788889987

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=0.053  Score=54.05  Aligned_cols=69  Identities=14%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      .-|.|--|-+-.|.++|.-||..             +|.+-.+-+-.|++|+-++-||||.|.+.++.++++-.+++..+
T Consensus       240 NVLFVCKLNPVTtDeDLeiIFSr-------------FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI  306 (479)
T KOG0415|consen  240 NVLFVCKLNPVTTDEDLEIIFSR-------------FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI  306 (479)
T ss_pred             ceEEEEecCCcccccchhhHHhh-------------cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee
Confidence            46788888888899999999987             78899999999999999999999999999999999999999887


Q ss_pred             cc
Q 037791          197 EV  198 (295)
Q Consensus       197 ~~  198 (295)
                      +.
T Consensus       307 DD  308 (479)
T KOG0415|consen  307 DD  308 (479)
T ss_pred             cc
Confidence            63

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=94.36  E-value=0.045  Score=50.74  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      -|.|.+||+.-.+.+|.++|..             +|++.-+=        .-.||+||.|.+..+|.+++..+||..+.
T Consensus         3 rv~vg~~~~~~~~~d~E~~f~~-------------yg~~~d~~--------mk~gf~fv~fed~rda~Dav~~l~~~~l~   61 (216)
T KOG0106|consen    3 RVYIGRLPYRARERDVERFFKG-------------YGKIPDAD--------MKNGFGFVEFEDPRDADDAVHDLDGKELC   61 (216)
T ss_pred             ceeecccCCccchhHHHHHHhh-------------ccccccce--------eecccceeccCchhhhhcccchhcCceec
Confidence            4789999999999999999987             44443221        12389999999999999999999999987


Q ss_pred             ccCCCCCceEEEEeccC----cCh----------------------------------HHHHHHhcccccccC---CCCc
Q 037791          198 VEAPGNKKMCEIACADI----QGR----------------------------------DALEKHFERFKFYCH---TDGY  236 (295)
Q Consensus       198 ~~~~gS~KiceVsyAri----QGk----------------------------------~aLv~hFrnS~v~~~---~~ey  236 (295)
                      .     .+ ..|+||+.    ||.                                  ..|.+||++.-.+-.   ...+
T Consensus        62 ~-----e~-~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~  135 (216)
T KOG0106|consen   62 G-----ER-LVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNF  135 (216)
T ss_pred             c-----ee-eeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccc
Confidence            3     22 77888874    211                                  135666666554321   2456


Q ss_pred             cceeeeCCCCCCCCC----CceecccccCCCCCCCCch
Q 037791          237 LPVILSPPRDGWNYS----KPIIVGKRFDVAAAPPLYF  270 (295)
Q Consensus       237 rP~iF~p~rdG~~~~----~~~~vG~~~~~~f~pp~~~  270 (295)
                      ..+-|+..+|-..+-    ...+.|+.+.......+..
T Consensus       136 ~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d~~  173 (216)
T KOG0106|consen  136 AFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRDRS  173 (216)
T ss_pred             cceeehhhhhhhhcchhccchhhcCceeeecccCcchh
Confidence            677777766666553    3445555555444444433

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=94.26  E-value=0.084  Score=52.93  Aligned_cols=71  Identities=13%  Similarity=0.232  Sum_probs=63.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ......|+|-.|=.+++++||+..|+.             +|++-++-|..+..++..+||+||.|.+.+.-.+++..+|
T Consensus       207 Ak~fnRiYVaSvHpDLSe~DiKSVFEA-------------FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN  273 (544)
T KOG0124|consen  207 AKKFNRIYVASVHPDLSETDIKSVFEA-------------FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN  273 (544)
T ss_pred             HHhhheEEeeecCCCccHHHHHHHHHh-------------hcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence            345678999999999999999999998             8999999999999999999999999999998888888877


Q ss_pred             CCcc
Q 037791          193 KYKW  196 (295)
Q Consensus       193 G~~w  196 (295)
                      =+.+
T Consensus       274 lFDL  277 (544)
T KOG0124|consen  274 LFDL  277 (544)
T ss_pred             hhhc
Confidence            4433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=94.16  E-value=0.085  Score=55.11  Aligned_cols=75  Identities=17%  Similarity=0.274  Sum_probs=59.3

Q ss_pred             CccEEEEcCCCCcc--CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          115 ENTTLMIRNIPNNL--KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       115 ~RTTVMIRNIPNk~--Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .-+-|.|-|||--=  .++.|+.+|.+.-  .+       .|+.-=+|+|+|-.++ .+||.|+.|.+..+|..+++.+|
T Consensus        57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvf--sk-------~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~  126 (698)
T KOG2314|consen   57 FDSVVVVDGAPVVGPARLEKLKKVLTKVF--SK-------AGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLN  126 (698)
T ss_pred             cceEEEECCCcccChhHHHHHHHHHHHHH--Hh-------hccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcc
Confidence            35689999999533  3455665555431  11       6788889999999988 78999999999999999999999


Q ss_pred             CCccccc
Q 037791          193 KYKWEVE  199 (295)
Q Consensus       193 G~~w~~~  199 (295)
                      |++++..
T Consensus       127 G~~ldkn  133 (698)
T KOG2314|consen  127 GKRLDKN  133 (698)
T ss_pred             cceeccc
Confidence            9999854

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=93.60  E-value=0.32  Score=49.63  Aligned_cols=81  Identities=22%  Similarity=0.313  Sum_probs=64.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -|.|-|=-+|+.+|-.||+..+..++...           -|+-.|+ |-  --|.--+-|.|.+.++|..||+.|||+.
T Consensus        74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I-----------~~irivR-d~--~pnrymvLIkFr~q~da~~Fy~efNGk~  139 (493)
T KOG0804|consen   74 STMLCILAVPAYMTSHDLLRFCASFIKQI-----------SDIRIVR-DG--MPNRYMVLIKFRDQADADTFYEEFNGKQ  139 (493)
T ss_pred             CcEEEEEeccccccHHHHHHHHHHHhhhh-----------heeEEee-cC--CCceEEEEEEeccchhHHHHHHHcCCCc
Confidence            78888999999999999999999765322           2444555 32  2456678899999999999999999999


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      |+..-   .-+|.|-|+.
T Consensus       140 Fn~le---~e~Chll~V~  154 (493)
T KOG0804|consen  140 FNSLE---PEVCHLLYVD  154 (493)
T ss_pred             CCCCC---ccceeEEEEE
Confidence            98774   4499988864

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=93.49  E-value=0.18  Score=53.96  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             ccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHH
Q 037791          108 VYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRF  187 (295)
Q Consensus       108 ~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F  187 (295)
                      .++-|--..|+|++-||+.+++..+|+..|..++.          ....--||-+.+-....-.--+||-|.+..||++|
T Consensus       166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgP----------lasvKimwpRtEeEk~r~r~cgfvafmnR~D~era  235 (877)
T KOG0151|consen  166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGP----------LASVKIMWPRTEEEKRRERNCGFVAFMNRADAERA  235 (877)
T ss_pred             cCCCCCCcccceeeecCCccccHHHHHHHhcccCc----------ccceeeecccchhhhccccccceeeehhhhhHHHH
Confidence            34445556899999999999999999999988653          23344455555555555555789999999999999


Q ss_pred             HHHhcCCcccccCCCCCceEEEEecc
Q 037791          188 WKACNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       188 ~~~fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      .+.++|.-.-.+      ...+.|++
T Consensus       236 ~k~lqg~iv~~~------e~K~gWgk  255 (877)
T KOG0151|consen  236 LKELQGIIVMEY------EMKLGWGK  255 (877)
T ss_pred             HHHhcceeeeee------eeeecccc
Confidence            999999887644      35667764

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=93.35  E-value=0.34  Score=47.06  Aligned_cols=85  Identities=16%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .|.|--|-..-+++|.+.+|..             +|.+|-+-+-... .+.++|-|||.|.++.+|..++..+||.+--
T Consensus        21 klfvgml~kqq~e~dvrrlf~p-------------fG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTm   86 (371)
T KOG0146|consen   21 KLFVGMLNKQQSEDDVRRLFQP-------------FGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTM   86 (371)
T ss_pred             hhhhhhhcccccHHHHHHHhcc-------------cCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccC
Confidence            4445555556678999999987             7778877655443 3678899999999999999999999998753


Q ss_pred             ccCCCCCceEEEEeccCcChHH
Q 037791          198 VEAPGNKKMCEIACADIQGRDA  219 (295)
Q Consensus       198 ~~~~gS~KiceVsyAriQGk~a  219 (295)
                         +|.+--+.|.||..-....
T Consensus        87 ---pGASSSLVVK~ADTdkER~  105 (371)
T KOG0146|consen   87 ---PGASSSLVVKFADTDKERT  105 (371)
T ss_pred             ---CCCccceEEEeccchHHHH
Confidence               3445568899998764443

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=93.28  E-value=0.37  Score=50.05  Aligned_cols=63  Identities=25%  Similarity=0.342  Sum_probs=52.2

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      -||||-|+|..++.++|+++|..++.+         .+         +-.|....|-.||-|-|..+|+++.+++++..+
T Consensus        76 ~~L~v~nl~~~Vsn~~L~~~f~~yGei---------r~---------ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~  137 (549)
T KOG4660|consen   76 GTLVVFNLPRSVSNDTLLRIFGAYGEI---------RE---------IRETPNKRGIVFVEFYDVRDAERALKALNRREI  137 (549)
T ss_pred             ceEEEEecCCcCCHHHHHHHHHhhcch---------hh---------hhcccccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence            399999999999999999999986532         11         223555679999999999999999999998877


Q ss_pred             c
Q 037791          197 E  197 (295)
Q Consensus       197 ~  197 (295)
                      .
T Consensus       138 ~  138 (549)
T KOG4660|consen  138 A  138 (549)
T ss_pred             h
Confidence            5

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=93.11  E-value=0.13  Score=51.76  Aligned_cols=65  Identities=15%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ...++|.|+|||-..+.++|.++|...+             .+-=.++..--..+.+..||||.|.+.+++...+++-
T Consensus       286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG-------------~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As  350 (419)
T KOG0116|consen  286 ADGLGIFVKNLPPDATPAELEEVFKQFG-------------PIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS  350 (419)
T ss_pred             ecccceEeecCCCCCCHHHHHHHHhhcc-------------cccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence            4456799999999999999999999854             3333332221122444499999999999998887764

>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]

Probab=92.99  E-value=0.58  Score=49.37  Aligned_cols=88  Identities=19%  Similarity=0.200  Sum_probs=67.2

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -.-|.|+||=.=||...|+++|...|...           -+|   =||..    +..|||.|.+.++|..-+.++||.+
T Consensus       444 SnvlhI~nLvRPFTlgQLkelL~rtgg~V-----------ee~---WmDkI----KShCyV~yss~eEA~atr~AlhnV~  505 (718)
T KOG2416|consen  444 SNVLHIDNLVRPFTLGQLKELLGRTGGNV-----------EEF---WMDKI----KSHCYVSYSSVEEAAATREALHNVQ  505 (718)
T ss_pred             cceEeeecccccchHHHHHHHHhhccCch-----------HHH---HHHHh----hcceeEecccHHHHHHHHHHHhccc
Confidence            34789999999999999999999865311           122   24433    4688999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCcChHHHHHHhcccc
Q 037791          196 WEVEAPGNKKMCEIACADIQGRDALEKHFERFK  228 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~  228 (295)
                      |...+   -|-+.+.|++   .+.|..| +|+.
T Consensus       506 WP~sN---PK~L~adf~~---~deld~h-r~~l  531 (718)
T KOG2416|consen  506 WPPSN---PKHLIADFVR---ADELDKH-RNGL  531 (718)
T ss_pred             cCCCC---CceeEeeecc---hhHHHHH-hccc
Confidence            99764   7899999986   3444444 4443

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=92.26  E-value=0.11  Score=50.55  Aligned_cols=63  Identities=22%  Similarity=0.286  Sum_probs=52.2

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..+|++-|-||-.+.+-++|++.|++.+...++          |           --++|+||.|...++|..+++.+||
T Consensus        76 k~stkl~vgNis~tctn~ElRa~fe~ygpviec----------d-----------ivkdy~fvh~d~~eda~~air~l~~  134 (346)
T KOG0109|consen   76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIEC----------D-----------IVKDYAFVHFDRAEDAVEAIRGLDN  134 (346)
T ss_pred             CCccccccCCCCccccCHHHhhhhcccCCceee----------e-----------eecceeEEEEeeccchHHHHhcccc
Confidence            348999999999999999999999985543332          1           1248999999999999999999888


Q ss_pred             Cccc
Q 037791          194 YKWE  197 (295)
Q Consensus       194 ~~w~  197 (295)
                      ..++
T Consensus       135 ~~~~  138 (346)
T KOG0109|consen  135 TEFQ  138 (346)
T ss_pred             cccc
Confidence            8876

>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]

Probab=91.90  E-value=0.42  Score=48.47  Aligned_cols=82  Identities=13%  Similarity=0.213  Sum_probs=64.6

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .-..-.|+.+-|||.+.++++|++.|.+.+..-           =-|.+.+.|.+      ||.+-+.+.|.|..+.-.+
T Consensus       410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~v-----------kafkff~kd~k------mal~q~~sveeA~~ali~~  472 (492)
T KOG1190|consen  410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQV-----------KAFKFFQKDRK------MALPQLESVEEAIQALIDL  472 (492)
T ss_pred             cCCchhheeeccCCcccchhHHHHhhhcCCceE-----------EeeeecCCCcc------eeecccCChhHhhhhcccc
Confidence            334456999999999999999999999875211           24555566654      9999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCc
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +++.+.     ..-.+.|+|.+.+
T Consensus       473 hnh~lg-----en~hlRvSFSks~  491 (492)
T KOG1190|consen  473 HNHYLG-----ENHHLRVSFSKST  491 (492)
T ss_pred             ccccCC-----CCceEEEEeeccc
Confidence            998875     3448899998754

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=91.89  E-value=0.85  Score=37.26  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=46.4

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .|.|+|.|||..-+...+..-|...+  +|+      .|+.=.+          .-|-|.|-|.+++.|.++.+.++|.-
T Consensus         2 ~s~L~V~NLP~~~d~~~I~~RL~qLs--dNC------GGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEd   63 (90)
T PF11608_consen    2 HSLLYVSNLPTNKDPSSIKNRLRQLS--DNC------GGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGED   63 (90)
T ss_dssp             SEEEEEES--TTS-HHHHHHHHHHHH--HTT------T--EEE------------TT-EEEEESSHHHHHHHHHHHTT--
T ss_pred             ccEEEEecCCCCCCHHHHHHHHHHHh--hcc------CCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccc
Confidence            47899999999998887666655543  233      4554332          12789999999999999999999975


Q ss_pred             ccccCCCCCceEEEEeccCcC
Q 037791          196 WEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQG  216 (295)
                      -  |.   . .+.|+|...+.
T Consensus        64 V--fG---~-kI~v~~~~~~r   78 (90)
T PF11608_consen   64 V--FG---N-KISVSFSPKNR   78 (90)
T ss_dssp             S--SS---S---EEESS--S-
T ss_pred             c--cc---c-eEEEEEcCCcc
Confidence            3  21   2 46788887654

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=91.70  E-value=0.6  Score=45.45  Aligned_cols=76  Identities=16%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .+-|.-||..++.++|++.|+.             +|...-.=+++|+.+..++||+||-|.+.+++.+..    ...+.
T Consensus        99 kiFvGG~~~~~~e~~~r~yfe~-------------~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~----~~~f~  161 (311)
T KOG4205|consen   99 KIFVGGLPPDTTEEDFKDYFEQ-------------FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT----LQKFH  161 (311)
T ss_pred             EEEecCcCCCCchHHHhhhhhc-------------cceeEeeEEeecccccccccceeeEeccccccceec----cccee
Confidence            5667799999999999999998             678888899999999999999999999987775432    22222


Q ss_pred             ccCCCCCceEEEEecc
Q 037791          198 VEAPGNKKMCEIACAD  213 (295)
Q Consensus       198 ~~~~gS~KiceVsyAr  213 (295)
                      .+   ..|.|+|-=|.
T Consensus       162 ~~---~gk~vevkrA~  174 (311)
T KOG4205|consen  162 DF---NGKKVEVKRAI  174 (311)
T ss_pred             ee---cCceeeEeecc
Confidence            33   25566666544

>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]

Probab=91.65  E-value=0.22  Score=47.62  Aligned_cols=67  Identities=22%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC--------Ccceee----EEEecCCHHHHH
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR--------RANLGY----AFVNFTTAAGAL  185 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t--------~~N~GY----AFVNF~spedA~  185 (295)
                      -|+|-|||+.|+-..|++||..             +|..+-+||-..-.+        +.|.++    +.|-|.+...|.
T Consensus        76 VvylS~IPp~m~~~rlReil~~-------------yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK  142 (278)
T KOG3152|consen   76 VVYLSNIPPYMDPVRLREILSQ-------------YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAK  142 (278)
T ss_pred             EEEeccCCCccCHHHHHHHHHh-------------ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHH
Confidence            6899999999999999999996             789999999876444        344433    569999999999


Q ss_pred             HHHHHhcCCccc
Q 037791          186 RFWKACNKYKWE  197 (295)
Q Consensus       186 ~F~~~fnG~~w~  197 (295)
                      +..+.+||....
T Consensus       143 ~iAe~Lnn~~Ig  154 (278)
T KOG3152|consen  143 RIAELLNNTPIG  154 (278)
T ss_pred             HHHHHhCCCccC
Confidence            999999987765

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=90.48  E-value=0.26  Score=47.91  Aligned_cols=71  Identities=20%  Similarity=0.197  Sum_probs=59.9

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH----
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA----  190 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~----  190 (295)
                      +.++|-|-.|....|++.|++.+..             +|+.+=+++-.|..++..+||+||+|.+++.+...+..    
T Consensus         5 ~~~KlfiGgisw~ttee~Lr~yf~~-------------~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~   71 (311)
T KOG4205|consen    5 ESGKLFIGGLSWETTEESLREYFSQ-------------FGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHK   71 (311)
T ss_pred             CCcceeecCcCccccHHHHHHHhcc-------------cCceeeEEEeccCCCCCcccccceecCCCcchheeecccccc
Confidence            5779999999999999999999955             88999999999999999999999999988776655443    


Q ss_pred             hcCCcccc
Q 037791          191 CNKYKWEV  198 (295)
Q Consensus       191 fnG~~w~~  198 (295)
                      ++|...+.
T Consensus        72 ~dgr~ve~   79 (311)
T KOG4205|consen   72 LDGRSVEP   79 (311)
T ss_pred             cCCccccc
Confidence            55555543

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=89.74  E-value=0.81  Score=37.52  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=35.8

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      -|-|.++....+.++|++.|.+             +|.+.|+    ||..+..  -|||-|.++++|..+++.+.-.
T Consensus         3 il~~~g~~~~~~re~iK~~f~~-------------~g~V~yV----D~~~G~~--~g~VRf~~~~~A~~a~~~~~~~   60 (105)
T PF08777_consen    3 ILKFSGLGEPTSREDIKEAFSQ-------------FGEVAYV----DFSRGDT--EGYVRFKTPEAAQKALEKLKEA   60 (105)
T ss_dssp             EEEEEE--SS--HHHHHHHT-S-------------S--EEEE----E--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred             EEEEecCCCCcCHHHHHHHHHh-------------cCCcceE----EecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence            5778889999999999999998             5656664    5655554  5679999999999999877654

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]

Probab=89.44  E-value=0.63  Score=43.32  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      +-+.|.|.|+--..|-+.+...|..             .|...-+-++.|..++...|||||-|.+.+.+...++ +||-
T Consensus       100 d~~sv~v~nvd~~~t~~~~e~hf~~-------------Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs  165 (231)
T KOG4209|consen  100 DAPSVWVGNVDFLVTLTKIELHFES-------------CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS  165 (231)
T ss_pred             CCceEEEeccccccccchhhheeec-------------cCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc
Confidence            3458889998777776665444543             4667667889998887899999999999999999999 9998


Q ss_pred             cccccCCCCCceEEEEeccCc
Q 037791          195 KWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQ  215 (295)
                      .+.      ....+|+|.++.
T Consensus       166 ~i~------~~~i~vt~~r~~  180 (231)
T KOG4209|consen  166 EIP------GPAIEVTLKRTN  180 (231)
T ss_pred             ccc------cccceeeeeeee
Confidence            886      346788887765

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=89.34  E-value=2.3  Score=42.39  Aligned_cols=94  Identities=13%  Similarity=0.067  Sum_probs=70.1

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .....|.|+|.|||..+|-+++.+++...+.+.....    -|+. -+-|=.|- .|.-+|=|-|.|.-.+.+.-+++.|
T Consensus       130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~----t~ep-k~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~il  203 (382)
T KOG1548|consen  130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQ----TGEP-KVKLYRDN-QGKLKGDALCCYIKRESVELAIKIL  203 (382)
T ss_pred             ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCC----CCCe-eEEEEecC-CCCccCceEEEeecccHHHHHHHHh
Confidence            4677899999999999999999999987553221100    1111 11222232 2677899999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcCh
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      ++..+.      ++.+.|+-|++|-+
T Consensus       204 De~~~r------g~~~rVerAkfq~K  223 (382)
T KOG1548|consen  204 DEDELR------GKKLRVERAKFQMK  223 (382)
T ss_pred             Cccccc------CcEEEEehhhhhhc
Confidence            999875      55789999999866

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=85.85  E-value=6  Score=42.19  Aligned_cols=77  Identities=16%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|-|--|.....-.+|++||...+.             .-=.-+..+-.+---..|+||.+.+.++|-+-|..+|.-.+ 
T Consensus       407 NlWVSGLSstTRAtDLKnlFSKyGK-------------VvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL-  472 (940)
T KOG4661|consen  407 NLWVSGLSSTTRATDLKNLFSKYGK-------------VVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL-  472 (940)
T ss_pred             ceeeeccccchhhhHHHHHHHHhcc-------------eeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh-
Confidence            5677778777778899999998543             33334455555666678999999999999999988877665 


Q ss_pred             ccCCCCCceEEEEecc
Q 037791          198 VEAPGNKKMCEIACAD  213 (295)
Q Consensus       198 ~~~~gS~KiceVsyAr  213 (295)
                           ..+++.|+-|+
T Consensus       473 -----HGrmISVEkaK  483 (940)
T KOG4661|consen  473 -----HGRMISVEKAK  483 (940)
T ss_pred             -----cceeeeeeecc
Confidence                 46788888776

>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]

Probab=84.31  E-value=1.2  Score=41.53  Aligned_cols=65  Identities=23%  Similarity=0.327  Sum_probs=54.0

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ..-..+.+.+.|++-.+.+.+|.+.|...             |..  -|.      ..+++.|||-|.+.+++.++++.+
T Consensus        95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~-------------g~~--~~~------~~~~~~~~v~Fs~~~da~ra~~~l  153 (216)
T KOG0106|consen   95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPA-------------GEV--TYV------DARRNFAFVEFSEQEDAKRALEKL  153 (216)
T ss_pred             cccccceeeeccchhhhhHHHHhhhhccc-------------CCC--chh------hhhccccceeehhhhhhhhcchhc
Confidence            45667889999999999999999999874             433  222      127899999999999999999999


Q ss_pred             cCCccc
Q 037791          192 NKYKWE  197 (295)
Q Consensus       192 nG~~w~  197 (295)
                      +|..+.
T Consensus       154 ~~~~~~  159 (216)
T KOG0106|consen  154 DGKKLN  159 (216)
T ss_pred             cchhhc
Confidence            999885

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=83.61  E-value=4.8  Score=37.77  Aligned_cols=75  Identities=25%  Similarity=0.320  Sum_probs=56.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .-++-+-|||...+.++|..++...             +.+.=+-|-  ..   -.|-|||.|.+...+..+.+.++|.+
T Consensus       146 n~ilf~~niP~es~~e~l~~lf~qf-------------~g~keir~i--~~---~~~iAfve~~~d~~a~~a~~~lq~~~  207 (221)
T KOG4206|consen  146 NNILFLTNIPSESESEMLSDLFEQF-------------PGFKEIRLI--PP---RSGIAFVEFLSDRQASAAQQALQGFK  207 (221)
T ss_pred             ceEEEEecCCcchhHHHHHHHHhhC-------------cccceeEec--cC---CCceeEEecchhhhhHHHhhhhccce
Confidence            4578899999999999999999873             333322221  11   13899999999999999999999998


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      ..-     +-...|.||+
T Consensus       208 it~-----~~~m~i~~a~  220 (221)
T KOG4206|consen  208 ITK-----KNTMQITFAK  220 (221)
T ss_pred             ecc-----CceEEecccC
Confidence            863     3377888875

>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]

Probab=82.21  E-value=3.5  Score=42.69  Aligned_cols=64  Identities=25%  Similarity=0.332  Sum_probs=51.3

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ..--.|.||=||=..|.+++.+.|.-.-            -.-|=+.|++|...+ .-|=|||-|.+.+.|+.+.+.
T Consensus       101 ~~d~vVRLRGLPfscte~dI~~FFaGL~------------Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~Al~r  164 (510)
T KOG4211|consen  101 ANDGVVRLRGLPFSCTEEDIVEFFAGLE------------IVPDGILLPMDQRGR-PTGEAFVQFESQESAEIALGR  164 (510)
T ss_pred             CCCceEEecCCCccCcHHHHHHHhcCCc------------ccccceeeeccCCCC-cccceEEEecCHHHHHHHHHH
Confidence            3455899999999999999999997531            112357799999876 779999999999999987653

>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]

Probab=80.68  E-value=2.1  Score=43.40  Aligned_cols=79  Identities=18%  Similarity=0.308  Sum_probs=62.5

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE--EEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF--LYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF--lYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      +--|.+|-||-.-+-+++++.|+++            .-.++|  +-+-++-. +..-|=|||.|.+.|+|....+.-+.
T Consensus       280 kdcvRLRGLPy~AtvEdIL~FlgdF------------a~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk  346 (508)
T KOG1365|consen  280 KDCVRLRGLPYEATVEDILDFLGDF------------ATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHK  346 (508)
T ss_pred             CCeeEecCCChhhhHHHHHHHHHHH------------hhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHH
Confidence            5679999999999999999999984            456677  66666543 55669999999999999999888887


Q ss_pred             CcccccCCCCCceEEEEecc
Q 037791          194 YKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAr  213 (295)
                      +...      ...|||--+.
T Consensus       347 ~~mk------~RYiEvfp~S  360 (508)
T KOG1365|consen  347 KLMK------SRYIEVFPCS  360 (508)
T ss_pred             hhcc------cceEEEeecc
Confidence            7652      3477876554

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=80.37  E-value=5.1  Score=41.61  Aligned_cols=46  Identities=15%  Similarity=0.233  Sum_probs=38.2

Q ss_pred             CCCccEEEecccccCC---cceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791          153 KSEFDFLYLPMDFRRR---ANLGYAFVNFTTAAGALRFWKACNKYKWEV  198 (295)
Q Consensus       153 ~G~YDFlYLPiDf~t~---~N~GYAFVNF~spedA~~F~~~fnG~~w~~  198 (295)
                      +|..+-+-.|.++.+.   -..|=-||-|.+.+++++++++|+|.++.+
T Consensus       433 ~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n  481 (500)
T KOG0120|consen  433 FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN  481 (500)
T ss_pred             cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence            6666777788886543   345899999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens} Len	7e-04

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYA 174
              T+++RNI  +     ++  L  +  +               + L  D + + N G+A
Sbjct: 8   HMDTIILRNIAPHTVVDSIMTALSPYASLAVNN-----------IRLIKDKQTQQNRGFA 56

Query: 175 FVNFTTAAGALRFWKACNK 193
           FV  ++A  A +  +    
Sbjct: 57  FVQLSSAMDASQLLQILQS 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.6
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.53
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.52
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.52
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.5
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.5
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.49
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.49
2div_A	99	TRNA selenocysteine associated protein; structural	99.49
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.49
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.48
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.48
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.47
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.47
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.46
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.46
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.46
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.46
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.46
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.46
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.45
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.44
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.44
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.44
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.43
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.43
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.43
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.43
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.43
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.43
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.42
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.42
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.42
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.42
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.42
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.41
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.41
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.41
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.41
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.41
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.41
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.4
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.4
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.4
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.4
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.4
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.4
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.39
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.39
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.39
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.39
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.38
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.38
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.38
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.37
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.37
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.37
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.36
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.36
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.36
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.36
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.36
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.35
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.35
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.35
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.35
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.35
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.35
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.34
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.34
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.34
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.34
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.34
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.34
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.34
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.33
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.33
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.33
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.33
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.33
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.32
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.32
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.32
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.32
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.32
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.31
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.31
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.31
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.31
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.3
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.3
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	99.3
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.29
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.29
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.28
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.28
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.28
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.28
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.28
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.27
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.27
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.27
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.27
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.27
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.26
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.26
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.26
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.26
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.25
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.25
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.24
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.24
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.24
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.23
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.23
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.23
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.23
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.22
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.22
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.22
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.22
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.22
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.21
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.21
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.21
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.21
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.21
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	98.84
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.2
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.2
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.19
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.18
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.18
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.18
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.18
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.17
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.17
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.17
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.16
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.16
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.16
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.16
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.15
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	99.15
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.15
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.15
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.14
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.13
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.13
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.12
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.12
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.11
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.1
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.1
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.1
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.09
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.08
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.06
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.06
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.06
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.05
1x5p_A	97	Negative elongation factor E; structure genomics,	99.05
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.05
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.04
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.02
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.02
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.02
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.01
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.0
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.0
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.0
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.0
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	98.99
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.98
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	98.97
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.97
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.96
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.95
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	98.94
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.94
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.94
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.93
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.91
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	98.91
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.91
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.89
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.88
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.87
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	98.85
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.85
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.83
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.82
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	98.79
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	98.77
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.76
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.75
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.73
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	98.71
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.69
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	98.67
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	98.66
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.56
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.54
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	98.51
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.49
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.2
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	97.51
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	96.85
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	96.82
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	96.71
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	96.05
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	94.77
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	92.67
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	91.28

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.60  E-value=3.3e-15  Score=116.56  Aligned_cols=82  Identities=27%  Similarity=0.370  Sum_probs=76.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      -.-|||.|+|||..+|+++|+++|.+             +|.+..+.|+.|..++.++|||||.|.++++|.++++.+||
T Consensus        17 ~~gt~lfV~nLp~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng   83 (99)
T 4fxv_A           17 FQGTNLIVNYLPQNMTQDELRSLFSS-------------IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG   83 (99)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC
Confidence            34689999999999999999999997             78899999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccC
Q 037791          194 YKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAri  214 (295)
                      ..|.      ++.+.|.||++
T Consensus        84 ~~~~------gr~l~V~~AkP   98 (99)
T 4fxv_A           84 LRLQ------SKTIKVSYARP   98 (99)
T ss_dssp             CEET------TEECEEEECCB
T ss_pred             CEEC------CEEEEEEEeeC
Confidence            9985      56899999975

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.53  E-value=2.7e-14  Score=111.72  Aligned_cols=86  Identities=19%  Similarity=0.262  Sum_probs=75.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC--ccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE--FDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~--YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ...-.||+|+|||...|+++|+++|.+             +|.  ..-+.|+.|..|+.++|||||.|.+.++|.++++.
T Consensus         6 ~~~m~tlfV~nL~~~~tee~L~~~F~~-------------~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~   72 (95)
T 2lkz_A            6 HHHMDTIILRNIAPHTVVDSIMTALSP-------------YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI   72 (95)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHSTT-------------TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred             CCccCEEEEeCCCCcCCHHHHHHHHHh-------------hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence            445679999999999999999999998             453  55789999999999999999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEecc
Q 037791          191 CNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      +||..+...-  .++.+.|.||+
T Consensus        73 lng~~~~~~i--~Gr~i~V~~Ak   93 (95)
T 2lkz_A           73 LQSLHPPLKI--DGKTIGVDFAK   93 (95)
T ss_dssp             HHSSSSCEEE--TTEEEEEEECC
T ss_pred             hcCCCCCceE--CCEEEEEEEcc
Confidence            9998755332  46799999997

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.52  E-value=4.9e-14  Score=104.14  Aligned_cols=82  Identities=16%  Similarity=0.259  Sum_probs=75.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus         4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~   70 (85)
T 3mdf_A            4 ATTKRVLYVGGLAEEVDDKVLHAAFIP-------------FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN   70 (85)
T ss_dssp             CCCSSEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHhc-------------cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence            456789999999999999999999987             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEecc
Q 037791          193 KYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAr  213 (295)
                      |..+.      ++.+.|.||+
T Consensus        71 g~~~~------g~~l~v~~ak   85 (85)
T 3mdf_A           71 ESELF------GRTIRVNLAK   85 (85)
T ss_dssp             TCEET------TEECEEEECC
T ss_pred             CCEEC------CcEEEEEEcC
Confidence            99985      5688999986

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.52  E-value=1.4e-13  Score=107.91  Aligned_cols=86  Identities=15%  Similarity=0.212  Sum_probs=78.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus        22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~   88 (115)
T 2cpz_A           22 GPEGANLFIYHLPQEFGDQDLLQMFMP-------------FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN   88 (115)
T ss_dssp             CSTTCCEEEESCCSSCCHHHHHHHHGG-------------GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence            445689999999999999999999997             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..|.      .+.+.|.||+.+..
T Consensus        89 g~~~~------g~~l~V~~a~~~~~  107 (115)
T 2cpz_A           89 GFQIG------MKRLKVQLKRSKND  107 (115)
T ss_dssp             TCEET------TEECEEECCCCSCC
T ss_pred             CCEEC------CEEEEEEEcCCCCc
Confidence            99985      56899999987653

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1e-13  Score=104.51  Aligned_cols=82  Identities=21%  Similarity=0.235  Sum_probs=75.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~   79 (94)
T 2e5h_A           13 APSKSTVYVSNLPFSLTNNDLYRIFSK-------------YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN   79 (94)
T ss_dssp             CCCTTSEEEESCCTTSCHHHHHHHTTT-------------TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence            445789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEecc
Q 037791          193 KYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAr  213 (295)
                      |..+.      .+.+.|.||+
T Consensus        80 g~~~~------g~~l~v~~ak   94 (94)
T 2e5h_A           80 NKQLF------GRVIKASIAI   94 (94)
T ss_dssp             TEEET------TEEEEEEECC
T ss_pred             CCeeC------CcEEEEEecC
Confidence            99885      5689999986

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=1.2e-13  Score=106.53  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=77.6

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~   86 (106)
T 1p27_B           20 SVEGWILFVTGVHEEATEEDIHDKFAE-------------YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN   86 (106)
T ss_dssp             BTTBEEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhc-------------cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence            345689999999999999999999987             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      ++.+.|.||+.++
T Consensus        87 g~~~~------g~~l~V~~a~~~~  104 (106)
T 1p27_B           87 GQDLM------GQPISVDWCFVRG  104 (106)
T ss_dssp             TCBSS------SSBCEEEESEESS
T ss_pred             CCEEC------CcEEEEEeecCCC
Confidence            99885      4578999998765

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=102.44  Aligned_cols=83  Identities=11%  Similarity=0.119  Sum_probs=74.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||.|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g   70 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAP-------------FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG   70 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHh-------------cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence            45789999999999999999999997             68899999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ..+.      ++.+.|.||+.+
T Consensus        71 ~~~~------g~~l~v~~a~~k   86 (87)
T 3bs9_A           71 QWLG------GRQIRTNWATRK   86 (87)
T ss_dssp             CEET------TEECEEEEEC--
T ss_pred             CEEC------CeEEEEEecCCC
Confidence            9885      568999999864

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=1.8e-13  Score=104.28  Aligned_cols=86  Identities=19%  Similarity=0.328  Sum_probs=78.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~   71 (99)
T 1whw_A            5 SSGSGRLFVRNLSYTSSEEDLEKLFSA-------------YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD   71 (99)
T ss_dssp             CCSCEEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999997             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      .+.+.|.||+.+..
T Consensus        72 g~~~~------g~~l~V~~a~~~~~   90 (99)
T 1whw_A           72 GQVFQ------GRMLHVLPSTIKKE   90 (99)
T ss_dssp             TEESS------SCEEEEEECCCCST
T ss_pred             CCEEC------CcEEEEEEcCCCcc
Confidence            99885      56899999987653

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=104.63  Aligned_cols=90  Identities=16%  Similarity=0.150  Sum_probs=78.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCcc-EEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFD-FLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YD-FlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+. .+.++.|..++.+.|||||.|.+.++|.++++.+
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l   72 (99)
T 2div_A            6 SGMAASLWMGDLEPYMDENFISRAFAT-------------MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI   72 (99)
T ss_dssp             CSSSSEEEECSCCTTCCHHHHHHHHHH-------------TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCccEEEEeCCCCCCCHHHHHHHHHH-------------hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence            445789999999999999999999998             67888 9999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcCh
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      ||..|....  ..+.+.|.||+.++.
T Consensus        73 ~g~~~~g~~--~~~~l~v~~a~~~~~   96 (99)
T 2div_A           73 NGKPLPGAT--PAKRFKLNYATYSGP   96 (99)
T ss_dssp             TTSEESSCS--SCEECCEEETTCCSS
T ss_pred             cCCccCCCC--cceeEEEeecCCCCC
Confidence            999987422  223489999998874

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.49  E-value=1.6e-13  Score=100.98  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=74.5

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      +||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||..+
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~   68 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKD-------------FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL   68 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTT-------------STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence            68999999999999999999987             78899999999999999999999999999999999999999998


Q ss_pred             cccCCCCCceEEEEeccCc
Q 037791          197 EVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQ  215 (295)
                      .      ++.+.|.||+.+
T Consensus        69 ~------g~~l~v~~a~~~   81 (83)
T 3md1_A           69 N------GRPLRINWAAKL   81 (83)
T ss_dssp             T------TEECEEEECCCC
T ss_pred             C------CcEEEEEecCcC
Confidence            5      568899999865

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=102.93  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=76.1

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|.|||..+|+++|+++|..             +|.+..+.++.|..++.++|||||.|.+.++|.++++.+||+
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~   70 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEP-------------FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF   70 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence            4679999999999999999999987             788999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .|.      .+.+.|.||+.+.
T Consensus        71 ~~~------g~~l~V~~a~~~~   86 (95)
T 2dnz_A           71 ELA------GRPMRVGHVTERL   86 (95)
T ss_dssp             CSS------SSCCEEEESSCCC
T ss_pred             eeC------CcEEEEEEccccc
Confidence            885      4579999998654

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=1.9e-13  Score=104.68  Aligned_cols=86  Identities=15%  Similarity=0.220  Sum_probs=78.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..++|.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus         9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~   75 (102)
T 2cqb_A            9 ATTKRVLYVGGLAEEVDDKVLHAAFIP-------------FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN   75 (102)
T ss_dssp             CCCCSCEEEESCCSSCCHHHHHHHHTT-------------TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHhhc-------------cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |+.+.      .+.+.|.||+.+..
T Consensus        76 g~~~~------g~~l~V~~a~~~~~   94 (102)
T 2cqb_A           76 ESELF------GRTIRVNLAKPMRI   94 (102)
T ss_dssp             TEEET------TEEEEEEECCCCCC
T ss_pred             CCEEC------CcEEEEEeCCCCCC
Confidence            99985      56899999987653

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=2.9e-13  Score=101.90  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=76.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||+|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~   78 (95)
T 2cqc_A           12 PDPNCCLGVFGLSLYTTERDLREVFSK-------------YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN   78 (95)
T ss_dssp             CCGGGCEEEESCCSSCCHHHHHHHHHT-------------TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999997             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      |..+.      .+.+.|.||+.
T Consensus        79 g~~~~------g~~l~v~~a~~   94 (95)
T 2cqc_A           79 GMELD------GRRIRVSGPSS   94 (95)
T ss_dssp             TEEET------TEEEEEECCSC
T ss_pred             CCEEC------CEEEEEEecCC
Confidence            99885      56899999873

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=2.1e-13  Score=104.78  Aligned_cols=86  Identities=19%  Similarity=0.262  Sum_probs=78.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~   76 (103)
T 2dnm_A           10 VDGMITLKVDNLTYRTSPDSLRRVFEK-------------YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD   76 (103)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence            455789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |+.|.      .+.+.|.||+.+..
T Consensus        77 g~~~~------g~~l~V~~a~~~~~   95 (103)
T 2dnm_A           77 GAELD------GRELRVQVARYGRR   95 (103)
T ss_dssp             SCCBT------TBCCEEEECSSCCS
T ss_pred             CCEEC------CcEEEEEECCcCCC
Confidence            99985      45789999987653

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=2.5e-13  Score=104.39  Aligned_cols=85  Identities=18%  Similarity=0.353  Sum_probs=78.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~   78 (103)
T 2cq0_A           12 ADDNATIRVTNLSEDTRETDLQELFRP-------------FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS   78 (103)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHTTSTT-------------TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence            455789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.+.|.||+.+.
T Consensus        79 g~~~~------g~~l~v~~a~~~~   96 (103)
T 2cq0_A           79 GFGYD------HLILNVEWAKPST   96 (103)
T ss_dssp             TCEET------TEECEEEESSCCC
T ss_pred             CCeeC------CcEEEEEECCCCC
Confidence            99985      5689999998765

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=4.1e-13  Score=102.90  Aligned_cols=89  Identities=17%  Similarity=0.215  Sum_probs=79.9

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||.
T Consensus         7 ~~~~l~V~nlp~~~~~~~l~~~f~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~   73 (104)
T 1p1t_A            7 SLRSVFVGNIPYEATEEQLKDIFSE-------------VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR   73 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHT-------------TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred             CccEEEEeCCCCcCCHHHHHHHHHh-------------cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence            4679999999999999999999997             788999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcChHHHHH
Q 037791          195 KWEVEAPGNKKMCEIACADIQGRDALEK  222 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQGk~aLv~  222 (295)
                      .|.      ++.+.|.||+.+......+
T Consensus        74 ~~~------g~~l~v~~a~~~~~~~~~~   95 (104)
T 1p1t_A           74 EFS------GRALRVDNAASEKNKEELK   95 (104)
T ss_dssp             SCS------SSCBEEEETTCTTHHHHHH
T ss_pred             eeC------CcEEEEEeCCCccchhhhc
Confidence            985      4578999999887654333

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=3.6e-13  Score=103.10  Aligned_cols=85  Identities=13%  Similarity=0.193  Sum_probs=77.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus         9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~   75 (102)
T 1x5s_A            9 ASDEGKLFVGGLSFDTNEQSLEQVFSK-------------YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN   75 (102)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHHH-------------HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999998             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        76 g~~~~------g~~l~v~~a~~~~   93 (102)
T 1x5s_A           76 GKSVD------GRQIRVDQAGKSS   93 (102)
T ss_dssp             TCCTT------SCCCEEEEEECCC
T ss_pred             CCEEC------CeEEEEEECCCCC
Confidence            99885      4578999998654

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=2.3e-13  Score=102.92  Aligned_cols=84  Identities=15%  Similarity=0.144  Sum_probs=76.0

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE-EecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL-YLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl-YLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...+||+|.|||..+|+++|+++|..             +|.+..+ .++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~   69 (96)
T 1x5t_A            3 SGSSGIFIGNLDPEIDEKLLYDTFSA-------------FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN   69 (96)
T ss_dssp             SCCCEEEEECCCTTCCHHHHHHHHHT-------------TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence            34679999999999999999999998             6778778 999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.+.|.||+.+.
T Consensus        70 g~~~~------g~~l~v~~a~~~~   87 (96)
T 1x5t_A           70 GQYLC------NRPITVSYAFKKD   87 (96)
T ss_dssp             TCEET------TEECEEEESCCCC
T ss_pred             CCEEC------CEEEEEEEecccC
Confidence            99985      5689999998765

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.46  E-value=3.2e-13  Score=102.81  Aligned_cols=84  Identities=14%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||..
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~   68 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSN-------------VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ   68 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHh-------------cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence            369999999999999999999997             7889999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCceEEEEeccCcChH
Q 037791          196 WEVEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQGk~  218 (295)
                      +.      ++.+.|.||+.++..
T Consensus        69 ~~------g~~l~V~~a~~~~~~   85 (96)
T 2x1f_A           69 LG------SRFLKCGYSSNSDIS   85 (96)
T ss_dssp             ET------TEECEEEECSCSSGG
T ss_pred             EC------CeEEEEEEcCCCCCC
Confidence            85      468999999988764

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=6.6e-13  Score=101.51  Aligned_cols=84  Identities=15%  Similarity=0.189  Sum_probs=75.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus        14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~   79 (100)
T 2do4_A           14 SLEKHKLFISGLPFSCTKEELEEICKA-------------HGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD   79 (100)
T ss_dssp             CCCCSCEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC
Confidence            345679999999999999999999997             6888999999998 89999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        80 g~~~~------g~~l~v~~a~~~~   97 (100)
T 2do4_A           80 GMTIK------ENIIKVAISNSGP   97 (100)
T ss_dssp             TEESS------SCEEEEEECCCCS
T ss_pred             CCEEC------CEEEEEEECCCCC
Confidence            98885      4589999998754

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=105.90  Aligned_cols=82  Identities=20%  Similarity=0.278  Sum_probs=71.8

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc-CC
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN-KY  194 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn-G~  194 (295)
                      +||+|+|||..+|+++|+++|.+             +| .+..+.|+.|..|+.++|||||.|.+.++|.++++.++ +.
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~-------------~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~   68 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQS-------------HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSL   68 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHH-------------HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHH-------------hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCe
Confidence            58999999999999999999998             45 67888999999999999999999999999999999874 44


Q ss_pred             cccccCCCCCceEEEEeccCcCh
Q 037791          195 KWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      .+.      ++.+.|.||+.+.+
T Consensus        69 ~~~------gr~i~V~~a~~~~~   85 (91)
T 2lxi_A           69 NIL------GQKVSMHYSDPKPK   85 (91)
T ss_dssp             EET------TEEEEEECCCSCCC
T ss_pred             EEC------CEEEEEEEcCCCCC
Confidence            553      56899999987643

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.44  E-value=5.7e-13  Score=104.27  Aligned_cols=86  Identities=10%  Similarity=0.099  Sum_probs=78.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~   78 (115)
T 2dgo_A           12 TSNHFHVFVGDLSPEITTEDIKAAFAP-------------FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG   78 (115)
T ss_dssp             STTCEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence            456789999999999999999999997             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |+.+.      .+.+.|.||+.+..
T Consensus        79 g~~~~------g~~l~V~~a~~~~~   97 (115)
T 2dgo_A           79 GQWLG------GRQIRTNWATRKPP   97 (115)
T ss_dssp             TCEET------TEECEEEESSCCCC
T ss_pred             CCEEC------CEEEEEEEccCCCC
Confidence            99885      56899999986643

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.44  E-value=1.8e-13  Score=103.55  Aligned_cols=82  Identities=13%  Similarity=0.091  Sum_probs=69.3

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC--CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS--EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G--~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      |.||.|+|||..+|+++|+++|..             +|  .+..+.++.|..++.++|||||.|.+.++|.++++.+||
T Consensus         1 r~~l~V~nL~~~~t~~~l~~~F~~-------------~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g   67 (90)
T 3p5t_L            1 RIALYIGNLTWWTTDEDLTEAVHS-------------LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK   67 (90)
T ss_dssp             ---CEEESCCTTCCHHHHHHHHHT-------------TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHH-------------hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC
Confidence            569999999999999999999987             67  888999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..|.      ++.+.|.+|..+.
T Consensus        68 ~~~~------gr~i~V~~~~~~~   84 (90)
T 3p5t_L           68 RELH------GQNPVVTPSNKLE   84 (90)
T ss_dssp             SCSS------SCCCEECCC----
T ss_pred             CeeC------CEEEEEEECCCCc
Confidence            9985      5578999998654

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.44  E-value=5e-13  Score=102.79  Aligned_cols=86  Identities=16%  Similarity=0.176  Sum_probs=78.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~   78 (105)
T 1x5u_A           12 RNQDATVYVGGLDEKVSEPLLWELFLQ-------------AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD   78 (105)
T ss_dssp             CCTTTEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence            456789999999999999999999998             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      .+.+.|.||+.+..
T Consensus        79 g~~~~------g~~l~v~~a~~~~~   97 (105)
T 1x5u_A           79 MIKLY------GKPIRVNKASAHNK   97 (105)
T ss_dssp             SCBCS------SCBCEEEETTTTSC
T ss_pred             CCeEC------CeEEEEEECCCCCc
Confidence            99885      45799999987653

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=4.6e-13  Score=102.91  Aligned_cols=83  Identities=16%  Similarity=0.166  Sum_probs=75.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|+.|  ++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~   76 (103)
T 2d9p_A           12 RYQVVNLYVKNLDDGIDDERLRKAFSP-------------FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN   76 (103)
T ss_dssp             CSSCCCEEEECCCTTCCHHHHHHTTTT-------------TSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC
Confidence            446789999999999999999999987             788999999998  88999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        77 g~~~~------g~~l~V~~a~~~~   94 (103)
T 2d9p_A           77 GRIVA------TKPLYVALAQRKE   94 (103)
T ss_dssp             TCBSS------SSBCEEEECSSCC
T ss_pred             CCEeC------CcEEEEEEecccc
Confidence            99985      5689999998764

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.43  E-value=2.3e-12  Score=102.47  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=76.9

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ..+..+||.|+|||..+|+++|+++|..             +|.+..+.++.|. ++.+.|||||.|.+.++|.++++.+
T Consensus        31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l   96 (124)
T 2kt5_A           31 GVETGAKLLVSNLDFGVSDADIQELFAE-------------FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQY   96 (124)
T ss_dssp             CCSSCEEEEEESCCSSCCHHHHHHHHHT-------------TSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHc
Confidence            3566789999999999999999999997             7889999999998 8999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ||..+.      ++.+.|.||....
T Consensus        97 ~g~~~~------g~~l~V~~a~~~~  115 (124)
T 2kt5_A           97 KGVPLD------GRPMDIQLVASQI  115 (124)
T ss_dssp             TTEESS------SCEEEEEEECCTT
T ss_pred             CCCEEC------CcEEEEEEeCCCC
Confidence            999885      4689999997643

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.43  E-value=7.1e-13  Score=102.27  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ..+..++|.|.|||..+|+++|+++|..             +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+
T Consensus        25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l   90 (107)
T 3ulh_A           25 GVETGGKLLVSNLDFGVSDADIQELFAE-------------FGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQY   90 (107)
T ss_dssp             CCCCSEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHh
Confidence            3566789999999999999999999997             7889999999998 8999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEecc
Q 037791          192 NKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAr  213 (295)
                      ||..+.      .+.+.|.||.
T Consensus        91 ~g~~~~------g~~l~V~~a~  106 (107)
T 3ulh_A           91 NGVPLD------GRPMNIQLVT  106 (107)
T ss_dssp             TTCEET------TEECEEEEEC
T ss_pred             CCCEeC------CcEEEEEEeC
Confidence            999985      5689999985

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.43  E-value=7.5e-13  Score=101.96  Aligned_cols=88  Identities=23%  Similarity=0.254  Sum_probs=77.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus        10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~   76 (106)
T 2dgp_A           10 DHDAIKLFIGQIPRNLDEKDLKPLFEE-------------FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH   76 (106)
T ss_dssp             CTTCEEEEEESCCTTCCHHHHHHHHHH-------------HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence            455789999999999999999999998             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+-.   +..+.+.|.||+.+.
T Consensus        77 g~~~~~---~~g~~l~v~~a~~~~   97 (106)
T 2dgp_A           77 EQKTLP---GMNRPIQVKPADSES   97 (106)
T ss_dssp             TTCCCT---TCSSCCEEEECCCCS
T ss_pred             CCcccC---CCCceEEEEECCccc
Confidence            988632   135678999998764

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.43  E-value=6.5e-13  Score=103.18  Aligned_cols=85  Identities=20%  Similarity=0.224  Sum_probs=77.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~   89 (110)
T 1oo0_B           23 SVEGWILFVTSIHEEAQEDEIQEKFCD-------------YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN   89 (110)
T ss_dssp             BTTBEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence            345689999999999999999999987             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      ++.+.|.||+.++
T Consensus        90 g~~~~------g~~l~V~~a~~~~  107 (110)
T 1oo0_B           90 GAEIM------GQTIQVDWCFVKG  107 (110)
T ss_dssp             TCEET------TEECEEEESEESS
T ss_pred             CCEEC------CcEEEEEEcccCC
Confidence            99885      5689999998765

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.43  E-value=4.5e-13  Score=101.85  Aligned_cols=84  Identities=12%  Similarity=0.175  Sum_probs=75.7

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEeccccc---CCcceeeEEEecCCHHHHHHHHHH
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFR---RRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~---t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ...+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..   ++.+.|||||.|.+.++|.++++.
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~   69 (98)
T 2cpf_A            3 SGSSGLFIKNLNFSTTEETLKGVFSK-------------VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ   69 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence            45689999999999999999999987             78899999999987   678999999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEeccCcC
Q 037791          191 CNKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +||+.+.      .+.+.|.||+...
T Consensus        70 l~g~~~~------g~~l~V~~a~~~~   89 (98)
T 2cpf_A           70 LQGHTVD------GHKLEVRISERAT   89 (98)
T ss_dssp             STTCEET------TEECEEECSSCSS
T ss_pred             hCCCeeC------CeEEEEEEccCCC
Confidence            9999885      5689999998654

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.42  E-value=1.3e-12  Score=101.07  Aligned_cols=85  Identities=19%  Similarity=0.296  Sum_probs=77.6

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|+|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~   78 (111)
T 1x4h_A           12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-------------FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS   78 (111)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence            455789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             ------CCcccccCCCCCceEEEEeccCcC
Q 037791          193 ------KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 ------G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                            |..+.      .+.+.|.||+.+.
T Consensus        79 ~~~~~~~~~~~------g~~l~v~~a~~~~  102 (111)
T 1x4h_A           79 LEAEGGGLKLD------GRQLKVDLAVTRD  102 (111)
T ss_dssp             TTTTTCCEESS------SCEEEEECCCCCC
T ss_pred             cccccCCcEEc------CEEEEEEECCCCc
Confidence                  88875      5689999998764

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=99.81  Aligned_cols=83  Identities=13%  Similarity=0.132  Sum_probs=74.3

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE--------EEecccccCCcceeeEEEecCCHHH
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF--------LYLPMDFRRRANLGYAFVNFTTAAG  183 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF--------lYLPiDf~t~~N~GYAFVNF~sped  183 (295)
                      .....++|.|.|||..+|+++|+++|..             +|.+..        +.++.|..++.+.|||||.|.+.++
T Consensus         9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~   75 (99)
T 2la6_A            9 SHSDNNTIFVQGLGENVTIESVADYFKQ-------------IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS   75 (99)
T ss_dssp             SCCCCSEEEEECCCSSCCHHHHHHHHTT-------------TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHH
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHH-------------hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHH
Confidence            3456789999999999999999999997             566766        9999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccccCCCCCceEEEEecc
Q 037791          184 ALRFWKACNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       184 A~~F~~~fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      |.++++.+||..|.      ++.+.|.||+
T Consensus        76 a~~Ai~~l~g~~~~------g~~l~V~~A~   99 (99)
T 2la6_A           76 AKAAIDWFDGKEFS------GNPIKVSFAT   99 (99)
T ss_dssp             HHHHHHHHTTCBSS------SSBCEEEECC
T ss_pred             HHHHHHHhCCCEeC------CcEEEEEecC
Confidence            99999999999885      4578999985

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1e-12  Score=100.27  Aligned_cols=84  Identities=13%  Similarity=0.184  Sum_probs=76.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++ +|
T Consensus         7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~   72 (99)
T 2dgs_A            7 GSKSNKIFVGGIPHNCGETELREYFKK-------------FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH   72 (99)
T ss_dssp             CSSCCEEEEESCCSSCCHHHHHHHHSS-------------SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC
Confidence            445679999999999999999999987             7889999999999999999999999999999999998 99


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.+.|.||+.+.
T Consensus        73 ~~~~~------g~~l~V~~a~~~~   90 (99)
T 2dgs_A           73 FHDIM------GKKVEVKRAEPRD   90 (99)
T ss_dssp             CCBSS------SCBCEEEECCCCC
T ss_pred             CCEEC------CeEEEEEECCCCc
Confidence            99885      4578999998664

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.42  E-value=5.4e-13  Score=98.85  Aligned_cols=81  Identities=15%  Similarity=0.277  Sum_probs=74.0

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCc-ceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA-NLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~-N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .+||.|.|||..+|+++|+++|..             +|.+..+.++.|..++. +.|||||.|.+.++|.++++.+||.
T Consensus         4 ~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~   70 (88)
T 4a8x_A            4 PTKVHIGRLTRNVTKDHIMEIFST-------------YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG   70 (88)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence            579999999999999999999987             78899999999988766 8999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCc
Q 037791          195 KWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQ  215 (295)
                      .+.      ++.+.|.||+.+
T Consensus        71 ~~~------g~~l~v~~a~~~   85 (88)
T 4a8x_A           71 QID------GQEITATAVLAP   85 (88)
T ss_dssp             EET------TEECEEEEECCC
T ss_pred             eEC------CeEEEEEECCCC
Confidence            985      567899999765

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.42  E-value=3.6e-13  Score=105.81  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|.+             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~  103 (118)
T 2khc_A           37 GPEGCNLFIYHLPQEFTDTDLASTFLP-------------FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN  103 (118)
T ss_dssp             CCCSEEEEEECSCTTCCHHHHHHHTTT-------------SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC
Confidence            345789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEecc
Q 037791          193 KYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAr  213 (295)
                      |..+.      ++.+.|.||+
T Consensus       104 g~~~~------g~~l~V~~ak  118 (118)
T 2khc_A          104 GFQVG------TKRLKVQLKK  118 (118)
T ss_dssp             CCEET------TEECCEEEC-
T ss_pred             CCEEC------CEEEEEEecC
Confidence            99985      5678999986

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=1.7e-12  Score=101.33  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=77.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||+|.|||..+|+++|+++|..             +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus        22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~   87 (114)
T 1x5o_A           22 EQDPTNLYISNLPLSMDEQELENMLKP-------------FGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFN   87 (114)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHTTTT-------------TSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence            445789999999999999999999987             7889999999998 89999999999999999999999999


Q ss_pred             CCcccccC--CCCCceEEEEeccCc
Q 037791          193 KYKWEVEA--PGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~--~gS~KiceVsyAriQ  215 (295)
                      |..|....  ....+.+.|.||...
T Consensus        88 g~~~~~~~~~~~~~~~l~v~~a~p~  112 (114)
T 1x5o_A           88 GKFIKTPPGVSAPTEPLLCKFSGPS  112 (114)
T ss_dssp             TCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred             CCEEcCCccccCCCCceeEEccCCC
Confidence            99986332  113567899999854

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.41  E-value=1.1e-12  Score=100.90  Aligned_cols=85  Identities=21%  Similarity=0.347  Sum_probs=76.8

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEeccc-ccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD-FRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiD-f~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|+.| ..++.+.|||||.|.+.++|.++++.+
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l   78 (107)
T 2cph_A           12 KQTTSKILVRNIPFQANQREIRELFST-------------FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL   78 (107)
T ss_dssp             SSCCCCEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHc-------------cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence            445789999999999999999999997             788999999999 788999999999999999999999999


Q ss_pred             -cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 -NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 -nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                       ||+.|.      .+.+.|.||+.+.
T Consensus        79 ~~~~~~~------g~~l~v~~a~~~~   98 (107)
T 2cph_A           79 CHSTHLY------GRRLVLEWADSEV   98 (107)
T ss_dssp             HTCCBSS------SCBCEEEECCCCC
T ss_pred             ccCCeEC------CCEEEEEeCCCCC
Confidence             899885      4578999998764

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.41  E-value=8e-13  Score=104.95  Aligned_cols=86  Identities=16%  Similarity=0.171  Sum_probs=77.8

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~   85 (126)
T 3ex7_B           19 SVEGWILFVTGVHEEATEEDIHDKFAE-------------YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN   85 (126)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence            344689999999999999999999997             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..|.      .+.+.|.||+.++.
T Consensus        86 g~~~~------g~~l~v~~a~~~~~  104 (126)
T 3ex7_B           86 GQDLM------GQPISVDWCFVRGP  104 (126)
T ss_dssp             TCBSS------SSBCEEEESEESSS
T ss_pred             CCeeC------CeEEEEEEecCCCC
Confidence            99985      45789999986654

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.41  E-value=1e-12  Score=103.53  Aligned_cols=85  Identities=15%  Similarity=0.227  Sum_probs=77.6

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      +....+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+
T Consensus        22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l   88 (108)
T 2jrs_A           22 GSAGPMRLYVGSLHFNITEDMLRGIFEP-------------FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL   88 (108)
T ss_dssp             SCSSCEEEEEECCCSSCCHHHHHHHHTT-------------TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc
Confidence            4566789999999999999999999987             788999999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCc
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ||..+.      ++.+.|.||+.+
T Consensus        89 ~g~~i~------g~~l~V~~a~~k  106 (108)
T 2jrs_A           89 NGFELA------GRPMKVGHVTER  106 (108)
T ss_dssp             TTCCSS------SSCCEEECSCSS
T ss_pred             CCCEEC------CEEEEEEEcccC
Confidence            999885      457899999865

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=1e-12  Score=102.45  Aligned_cols=86  Identities=10%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCcc--------EEEecccccCCcceeeEEEecCCHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFD--------FLYLPMDFRRRANLGYAFVNFTTAAGA  184 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YD--------FlYLPiDf~t~~N~GYAFVNF~spedA  184 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+.        .+.|+.|..++.+.|||||.|.+.++|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A   78 (113)
T 2cpe_A           12 DSDNSAIYVQGLNDSVTLDDLADFFKQ-------------CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTA   78 (113)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHHTT-------------TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHH
T ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHh-------------cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHH
Confidence            455789999999999999999999998             56666        589999999999999999999999999


Q ss_pred             HHHHHHhcCCcccccCCCCCceEEEEeccCcCh
Q 037791          185 LRFWKACNKYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      .++++.+||+.|.      .+.+.|.||+.+..
T Consensus        79 ~~Ai~~l~g~~~~------g~~l~V~~a~~~~~  105 (113)
T 2cpe_A           79 KAAVEWFDGKDFQ------GSKLKVSLARKKPP  105 (113)
T ss_dssp             HHHHHHHTTCEET------TEECEEECSSCCCC
T ss_pred             HHHHHHcCCCccC------CCEEEEEECCCCCC
Confidence            9999999999985      56899999987653

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.41  E-value=9.5e-13  Score=99.31  Aligned_cols=81  Identities=10%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+..+.|+.|.. +.++|||||.|.+.++|.++++.+|
T Consensus        13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~-------------~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~   78 (95)
T 2ywk_A           13 EEADRTVFVGNLEARVREEILYELFLQ-------------AGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLN   78 (95)
T ss_dssp             TTGGGEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999987             68899999999986 8899999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEecc
Q 037791          193 KYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAr  213 (295)
                      |+.+.      .+.+.|.||+
T Consensus        79 g~~~~------g~~l~V~~a~   93 (95)
T 2ywk_A           79 GIRLY------GRPINVSGPS   93 (95)
T ss_dssp             TCEET------TEECEEECCC
T ss_pred             CCEEC------CCEEEEEEcC
Confidence            99985      4678999986

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.40  E-value=1.2e-12  Score=104.24  Aligned_cols=82  Identities=17%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|+|||..+|+++|+++|.+             +|.+..+.|+.|..|+.++|||||.|.+.++|.++++.+||.
T Consensus         5 p~~~lfV~nL~~~~te~~L~~~F~~-------------~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~   71 (110)
T 3s8s_A            5 PLKEVTFARLNDNVRETFLKDMCRK-------------YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT   71 (110)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHh-------------cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence            3569999999999999999999987             789999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCc
Q 037791          195 KWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQ  215 (295)
                      .+.      .+.+.|.+|+-.
T Consensus        72 ~~~------gr~i~V~~a~~~   86 (110)
T 3s8s_A           72 SVM------GNIIHAQLDIKG   86 (110)
T ss_dssp             EET------TEECEEEECSTT
T ss_pred             EEC------CeEEEEEECCCC
Confidence            985      568999999743

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.40  E-value=6.6e-13  Score=108.21  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ..+..+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+
T Consensus        42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l  108 (129)
T 2kxn_B           42 NPDPNCCLGVFGLSLYTTERDLREVFSK-------------YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA  108 (129)
T ss_dssp             CCCCSSCBCEETCTTSCCHHHHHHHHTT-------------TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence            3456789999999999999999999987             788999999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ||..+.      .+.+.|.||+.+.
T Consensus       109 ng~~i~------g~~l~V~~a~~~~  127 (129)
T 2kxn_B          109 NGMELD------GRRIRVDFSITKR  127 (129)
T ss_dssp             TTCCSS------SSCCEESCCSSSS
T ss_pred             CCCEEC------CEEEEEEEecCCC
Confidence            999885      4578999998653

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.40  E-value=1.3e-12  Score=102.67  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=75.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus        14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~   80 (116)
T 2cqd_A           14 DTTFTKIFVGGLPYHTTDASLRKYFEG-------------FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN   80 (116)
T ss_dssp             SCSSSEEEEECCCSSCCHHHHHHHHHT-------------TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence            455789999999999999999999997             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      + .+.      .+.+.|.||..+.
T Consensus        81 ~-~~~------g~~l~V~~a~~~~   97 (116)
T 2cqd_A           81 P-IID------GRKANVNLAYLGA   97 (116)
T ss_dssp             C-EET------TEECEEEESTTTC
T ss_pred             C-cCC------CEEEEEEEcccCC
Confidence            8 553      5689999997653

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.40  E-value=1.3e-12  Score=98.07  Aligned_cols=83  Identities=14%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|.+             +|.+..+.+..|  ++.+.|||||.|.+.++|.++++.+|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~   69 (92)
T 2dgv_A            5 SSGACQIFVRNLPFDFTWKMLKDKFNE-------------CGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMN   69 (92)
T ss_dssp             SSSCCEEEECSCCTTCCHHHHHHHHHT-------------TSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999998             677888888774  78899999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..|.      .+.+.|.||+.+.
T Consensus        70 g~~~~------g~~l~v~~a~~~~   87 (92)
T 2dgv_A           70 GMKLS------GREIDVRIDRNAS   87 (92)
T ss_dssp             TCCBT------TBCCCCEECSCCS
T ss_pred             CCEEC------CcEEEEEEcCCCC
Confidence            99985      4578999998764

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.40  E-value=1.9e-12  Score=99.60  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=76.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||.|.|||..+|+++|+++|..             +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+||
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g   78 (105)
T 2dnh_A           13 GRDRKLFVGMLNKQQSEEDVLRLFQP-------------FGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHG   78 (105)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence            45789999999999999999999997             7889999999997 788999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..|..   +..+.+.|.||+.+.
T Consensus        79 ~~~~g---g~~~~l~V~~a~~~~   98 (105)
T 2dnh_A           79 SQTMP---GASSSLVVKFADTDK   98 (105)
T ss_dssp             CCCCT---TCSSCCEEEESCSSC
T ss_pred             CccCC---CCCccEEEEECccCc
Confidence            99863   233688999998654

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.40  E-value=6.7e-13  Score=100.90  Aligned_cols=84  Identities=12%  Similarity=0.024  Sum_probs=74.4

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      +.+..++|+|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+
T Consensus        11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~-------------~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l   77 (98)
T 2cqp_A           11 GKPGPTIIKVQNMPFTVSIDEILDFFYG-------------YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL   77 (98)
T ss_dssp             CCCSSEEEEEESCCTTCCHHHHHHHTTT-------------SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence            3556789999999999999999999987             566766778888889999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAri  214 (295)
                      ||..|.      .+.+.|.||+-
T Consensus        78 ~g~~~~------g~~l~V~~a~~   94 (98)
T 2cqp_A           78 NDRPIG------SRKVKLVLGSG   94 (98)
T ss_dssp             TTCEET------TEECEEEESSC
T ss_pred             CCCeeC------CeEEEEEEcCC
Confidence            999885      46889999874

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.39  E-value=5.4e-13  Score=109.31  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=78.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus        44 ~~~~~~l~V~nLp~~~te~~L~~~F~~-------------~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~  110 (135)
T 2lea_A           44 VEGMTSLKVDNLTYRTSPDTLRRVFEK-------------YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD  110 (135)
T ss_dssp             GGGCCCEEEECCCSSCHHHHHHHHHGG-------------GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence            455789999999999999999999987             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      .+.+.|.||+.+..
T Consensus       111 g~~i~------g~~l~V~~a~~~~~  129 (135)
T 2lea_A          111 GAVLD------GRELRVQMARYGRP  129 (135)
T ss_dssp             TCCSS------SSCCEEEECCCCCC
T ss_pred             CCEEC------CEEEEEEECCCCCC
Confidence            99985      45789999997754

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.39  E-value=6.9e-13  Score=102.73  Aligned_cols=82  Identities=12%  Similarity=0.218  Sum_probs=74.9

Q ss_pred             CccEEEEcCCCC------ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791          115 ENTTLMIRNIPN------NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW  188 (295)
Q Consensus       115 ~RTTVMIRNIPN------k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~  188 (295)
                      ..+||.|.|||.      ..++++|+++|..             +|.+..+.|+.|..|+.++|||||.|.++++|.+++
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-------------~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai   71 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-------------AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKII   71 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-------------TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-------------cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence            357999999999      9999999999997             789999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCCCCCceEEEEeccC
Q 037791          189 KACNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       189 ~~fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      +.+||..+..     .+.+.|.||..
T Consensus        72 ~~lng~~~~g-----~r~l~V~~a~~   92 (100)
T 3ns6_A           72 KSFHGKRLDL-----KHRLFLYTMKD   92 (100)
T ss_dssp             HHHTTCBSSS-----SCBCEEEESHH
T ss_pred             HHhCCcccCC-----CeEEEEEECch
Confidence            9999999862     25789999963

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=104.51  Aligned_cols=81  Identities=16%  Similarity=0.260  Sum_probs=73.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.++|||||.|.+.++|.++++.+|
T Consensus        60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~  126 (140)
T 2ku7_A           60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-------------FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN  126 (140)
T ss_dssp             CSSCCEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred             CCCCcEEEEEeCCCCCCHHHHHHHHHh-------------cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence            445789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEec
Q 037791          193 KYKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyA  212 (295)
                      |..+.      ++.+.|.||
T Consensus       127 g~~~~------g~~l~v~~A  140 (140)
T 2ku7_A          127 ESELF------GRTIRVNLA  140 (140)
T ss_dssp             EEEET------TEEEEEEC-
T ss_pred             CCEEC------CEEEEEEeC
Confidence            99885      568899887

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.39  E-value=1.9e-12  Score=103.10  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=76.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+..+.++.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus         4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~   69 (116)
T 2fy1_A            4 ADHPGKLFIGGLNRETNEKMLKAVFGK-------------HGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMN   69 (116)
T ss_dssp             TCSCCEEEEECCTTTCCHHHHHHHHHT-------------SSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC
Confidence            455689999999999999999999997             7889999999998 89999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      ++.+.|.||+.+.
T Consensus        70 g~~~~------g~~l~V~~a~~~~   87 (116)
T 2fy1_A           70 GKSLH------GKAIKVEQAKKPS   87 (116)
T ss_dssp             SCBCS------SSBCEEEECCCSS
T ss_pred             CCEEC------CEEEEEEECCCCC
Confidence            99985      4578999998654

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.38  E-value=2e-12  Score=104.24  Aligned_cols=85  Identities=20%  Similarity=0.287  Sum_probs=77.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||+|.|||..+|+++|+++|..             +|.+..+.++.|..++.++|||||.|.+.++|.++++.+|
T Consensus        39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~  105 (139)
T 1u6f_A           39 PDVLRNLMVNYIPTTVDEVQLRQLFER-------------YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN  105 (139)
T ss_dssp             TTTTSEEEEESCSTTCCHHHHHHHHHH-------------HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999998             6888999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+...
T Consensus       106 g~~~~------g~~l~v~~a~~~~  123 (139)
T 1u6f_A          106 GFNIL------NKRLKVALAASGH  123 (139)
T ss_dssp             TEECS------SCEEEEEESSCCC
T ss_pred             CCEEC------CeEEEEEECCCCC
Confidence            99885      5689999998653

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=100.65  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=76.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|+|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++. |
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~   78 (105)
T 2dh8_A           13 ADEIGKLFVGGLDWSTTQETLRSYFSQ-------------YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R   78 (105)
T ss_dssp             SSSSSEECCBSCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C
Confidence            456789999999999999999999997             78899999999999999999999999999999999999 9


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.+.|.||+.+.
T Consensus        79 ~~~~~------g~~l~V~~a~~~~   96 (105)
T 2dh8_A           79 PHTLD------GRNIDPKPCTPRG   96 (105)
T ss_dssp             SEEET------TEEEBCCCSCCSS
T ss_pred             CCeEC------CEEEEEEEccCCC
Confidence            98885      5688999998654

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.38  E-value=1.8e-12  Score=102.70  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=71.8

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .-|||.|+|||..+|+++|+++|.+             +|.+..+.|+.|..  .++|||||.|.+.++|.++++.+||+
T Consensus         4 ~~~~lfV~nLp~~~te~~L~~~F~~-------------~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~   68 (115)
T 4f25_A            4 GSGNIFIKNLDKSIDNKALYDTFSA-------------FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGM   68 (115)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHhc-------------cCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCC
Confidence            3679999999999999999999997             68888999999854  37899999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      ++.+.|.||+.+.
T Consensus        69 ~~~------g~~i~V~~a~~~~   84 (115)
T 4f25_A           69 LLN------DRKVFVGRFKSRK   84 (115)
T ss_dssp             EET------TEECEEEESSCCC
T ss_pred             EEC------CEEEEEEECCCcc
Confidence            985      5688999998654

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.37  E-value=3.2e-12  Score=98.21  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=74.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.|..|..+  +.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~   76 (103)
T 2cq3_A           12 KSTPKRLHVSNIPFRFRDPDLRQMFGQ-------------FGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLH   76 (103)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHGGG-------------TSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999987             788999999998653  89999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.|.      .+.+.|.||+.+.
T Consensus        77 g~~~~------g~~l~v~~a~~~~   94 (103)
T 2cq3_A           77 GTVVE------GRKIEVNNATARV   94 (103)
T ss_dssp             TCEET------TEECEEEECCSSC
T ss_pred             CCEEC------CEEEEEEEcccCC
Confidence            99985      5689999998764

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.37  E-value=2.5e-12  Score=105.49  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=77.8

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....++|.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus        67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~-------------~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~  133 (158)
T 2kn4_A           67 VEGMTSLKVDNLTYRTSPDTLRRVFEK-------------YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD  133 (158)
T ss_dssp             CCBCCEEEEESCCTTCCHHHHHHHHHH-------------HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999987             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.|.      ++.+.|.||+.+.
T Consensus       134 g~~~~------g~~l~v~~a~~~~  151 (158)
T 2kn4_A          134 GAVLD------GRELRVQMARYGR  151 (158)
T ss_dssp             TEESS------SSEEEEEEECCSS
T ss_pred             CCEEC------CeEEEEEECCCCC
Confidence            99985      5689999998764

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.37  E-value=2.9e-12  Score=105.66  Aligned_cols=85  Identities=13%  Similarity=0.244  Sum_probs=77.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+|
T Consensus        36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~  102 (156)
T 1h2v_Z           36 LKKSCTLYVGNLSFYTTEEQIYELFSK-------------SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN  102 (156)
T ss_dssp             TTTCCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999987             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.|.      .+.+.|.||+...
T Consensus       103 g~~~~------g~~l~V~~a~~~~  120 (156)
T 1h2v_Z          103 GTRLD------DRIIRTDWDAGFK  120 (156)
T ss_dssp             TSEET------TEECEEEEESCCC
T ss_pred             CCEEC------CeEEEEEECCCCC
Confidence            99985      5689999998543

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.36  E-value=2.1e-12  Score=96.13  Aligned_cols=79  Identities=9%  Similarity=0.136  Sum_probs=73.1

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.+++ .+||..
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~   71 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHG-------------CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL   71 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGG-------------GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE
Confidence            469999999999999999999997             688999999999999999999999999999999999 999999


Q ss_pred             ccccCCCCCceEEEEeccC
Q 037791          196 WEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAri  214 (295)
                      +.      ++.+.|.||+.
T Consensus        72 ~~------g~~l~V~~a~~   84 (89)
T 3ucg_A           72 FR------GRQIKVIPKRT   84 (89)
T ss_dssp             ET------TEECEEEETTT
T ss_pred             EC------CcEEEEEEccC
Confidence            85      56789999975

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.36  E-value=3.9e-12  Score=97.68  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=73.8

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..+  +.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~   76 (103)
T 2cqi_A           12 DGQPRTLYVGNLSRDVTEVLILQLFSQ-------------IGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN   76 (103)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHHHH-------------HSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCccCCHHHHHHHHHh-------------cCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999998             678889999998544  68999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        77 g~~~~------g~~l~V~~a~~~~   94 (103)
T 2cqi_A           77 GRKIL------GKEVKVNWATTPS   94 (103)
T ss_dssp             TEEET------TEEEEEEECCCTT
T ss_pred             CCCcC------CCeEEEEECCCCc
Confidence            99985      5689999998754

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=98.65  Aligned_cols=82  Identities=16%  Similarity=0.215  Sum_probs=72.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..                |--+.+..|..++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~----------------~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~   75 (102)
T 2fc8_A           12 SQPSKTLFVKGLSEDTTEETLKESFDG----------------SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME   75 (102)
T ss_dssp             SCCCSSEEEECCCTTCCHHHHHHTSTT----------------CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCccCHHHHHHHhcC----------------CeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999988864                3457888898899999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.+.|.||+.+.
T Consensus        76 g~~~~------g~~l~V~~a~~~~   93 (102)
T 2fc8_A           76 DGEID------GNKVTLDWAKPKG   93 (102)
T ss_dssp             TCEET------TEECEEEECCCCC
T ss_pred             CCeEC------CeEEEEEEecCCC
Confidence            99885      5689999998764

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.36  E-value=1.4e-12  Score=101.71  Aligned_cols=84  Identities=20%  Similarity=0.245  Sum_probs=71.5

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||.|.|||..+|+++|+++|..+             |.+..+.+.++..++.+.|||||.|.+.++|.++++.+||
T Consensus        23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-------------G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g   89 (115)
T 2cpx_A           23 EPNKVLYLKNLSPRVTERDLVSLFARF-------------QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG   89 (115)
T ss_dssp             SCCSEEEEECCCTTCCHHHHHHHTHHH-------------HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHh-------------CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence            346799999999999999999999984             4555555566666889999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..+.      .+.+.|.||+.+.
T Consensus        90 ~~~~------g~~l~v~~a~~~~  106 (115)
T 2cpx_A           90 YKLY------GKILVIEFGKNKK  106 (115)
T ss_dssp             CBCS------SCBCEEEECCCCS
T ss_pred             CEeC------CcEEEEEEccCCC
Confidence            9884      4578999998764

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.4e-12  Score=98.55  Aligned_cols=82  Identities=22%  Similarity=0.428  Sum_probs=71.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|.+             +|.   +.++.| .++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~g~---v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~   74 (101)
T 2fc9_A           12 SGESKTLVLSNLSYSATEETLQEVFEK-------------ATF---IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN   74 (101)
T ss_dssp             SCCCSEEEEESCCTTCCHHHHHHHCSS-------------CSE---EECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCE---EEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence            345789999999999999999999876             343   467777 778899999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |+.+.      .+.+.|.||+.++.
T Consensus        75 g~~~~------g~~l~v~~a~~~~~   93 (101)
T 2fc9_A           75 KREIE------GRAIRLELQGPRGS   93 (101)
T ss_dssp             SEEET------TEEEEEEECSSCCC
T ss_pred             CCEeC------CeEEEEEEcCCCCC
Confidence            99885      56899999988754

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.35  E-value=1.4e-12  Score=98.32  Aligned_cols=82  Identities=12%  Similarity=0.060  Sum_probs=71.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.++++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~   78 (95)
T 2ek1_A           12 KPGPTVIKVQNMPFTVSIDEILDFFYG-------------YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN   78 (95)
T ss_dssp             ---CEEEEEECCCTTCCHHHHHHHTTT-------------SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence            334689999999999999999999987             5677777888888899999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEecc
Q 037791          193 KYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAr  213 (295)
                      |+.|.      .+.+.|.+|.
T Consensus        79 g~~~~------gr~l~v~~a~   93 (95)
T 2ek1_A           79 DRPIG------SRKVKLSGPS   93 (95)
T ss_dssp             TCEET------TEECEEECCC
T ss_pred             CCeEC------CcEEEEEecc
Confidence            99985      4578888875

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=4.2e-12  Score=98.95  Aligned_cols=84  Identities=11%  Similarity=0.033  Sum_probs=74.8

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-------------~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~   77 (114)
T 2do0_A           12 GRLGSTVFVANLDYKVGWKKLKEVFSM-------------AGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN   77 (114)
T ss_dssp             CCCCSCEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence            344679999999999999999999987             7889999999997 58899999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.+.|.||+.+.
T Consensus        78 g~~~~------g~~l~v~~a~~~~   95 (114)
T 2do0_A           78 GQLLF------DRPMHVKMDERAL   95 (114)
T ss_dssp             TCEET------TEECEEEECSCCC
T ss_pred             CCEeC------CCEEEEEEcccCC
Confidence            99985      5678999997643

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.35  E-value=2.2e-12  Score=108.70  Aligned_cols=86  Identities=10%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC--CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS--EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G--~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      +..+||.|.|||..+|+++|+++|..             +|  .+..+.|+.|..++.++|||||.|.+.++|.++++.+
T Consensus        53 ~~~~~lfVgnLp~~~te~~L~~~F~~-------------~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l  119 (156)
T 3n9u_C           53 NRRAAVYVGSFSWWTTDQQLIQVIRS-------------IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELL  119 (156)
T ss_dssp             ---CEEEEECCCTTCCHHHHHHHHHH-------------TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHH-------------HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence            45789999999999999999999987             67  8889999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcChH
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQGk~  218 (295)
                      ||+.+.      ++.+.|.||..|...
T Consensus       120 ng~~~~------Gr~l~V~~a~~~~~~  140 (156)
T 3n9u_C          120 PGKVLN------GEKVDVRPATRQNLS  140 (156)
T ss_dssp             TTCEET------TEECEEEECCHHHHH
T ss_pred             CCCEEC------CeEeEEEEcCCCcch
Confidence            999985      568999999877654

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.35  E-value=4.7e-13  Score=99.31  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=66.4

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||.|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g   69 (85)
T 1x4e_A            3 SGSSGLYIRGLQPGTTDQDLVKLCQP-------------YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA   69 (85)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHTTSTT-------------TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence            34679999999999999999999987             78899999999999999999999999999999999999999


Q ss_pred             Cccc
Q 037791          194 YKWE  197 (295)
Q Consensus       194 ~~w~  197 (295)
                      +.+.
T Consensus        70 ~~~~   73 (85)
T 1x4e_A           70 SGVQ   73 (85)
T ss_dssp             HTCC
T ss_pred             CeEe
Confidence            9886

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.35  E-value=3.2e-12  Score=98.56  Aligned_cols=82  Identities=15%  Similarity=0.239  Sum_probs=74.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC-CcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR-RANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t-~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...+||.|.|||..+|+++|+++|..             +| +..+.|+.|..+ +.+.|||||.|.+.++|.+++ .+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~   77 (104)
T 1wi8_A           13 SPPYTAFLGNLPYDVTEESIKEFFRG-------------LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN   77 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTTT-------------SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHH-------------CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC
Confidence            34689999999999999999999987             67 889999999988 899999999999999999999 999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        78 g~~~~------g~~l~V~~a~~~~   95 (104)
T 1wi8_A           78 EESLG------NKRIRVDVADQAQ   95 (104)
T ss_dssp             TCEET------TEECEEEECCCCC
T ss_pred             CCEeC------CcEEEEEEccCCC
Confidence            99885      5689999998654

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.35  E-value=4.7e-12  Score=96.94  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=73.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHH----HHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLL----HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW  188 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll----~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~  188 (295)
                      ....+||.|.|||..+|+++|+    ++|..             +|.+..+.++.|..+   +|||||.|.+.++|.+++
T Consensus         6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-------------~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai   69 (96)
T 2dgx_A            6 SGNGADVQVSNIDYRLSRKELQQLLQEAFAR-------------HGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAV   69 (96)
T ss_dssp             CSSCEEEEEESCCTTSCHHHHHHHHHHHHHH-------------HSCEEEEEECSCCST---TCCEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHhccc-------------cCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHH
Confidence            4557899999999999999999    77776             688899999999876   899999999999999999


Q ss_pred             HHhcCCcccccCCCCCceEEEEeccCcC
Q 037791          189 KACNKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       189 ~~fnG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +.+||..|.      .+.+.|.||+.+.
T Consensus        70 ~~l~g~~~~------gr~l~V~~a~~~~   91 (96)
T 2dgx_A           70 NSLHRYKIG------SKKILVSLATGAS   91 (96)
T ss_dssp             HHHTTEEET------TEEEEEEECCCSS
T ss_pred             HHhCCCEEC------CeEEEEEEcCCCC
Confidence            999999985      5689999998653

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.34  E-value=3.5e-12  Score=98.18  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|..             +| +..+.++.|..++.+.|||||.|.+.++|.+++ .+|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~   76 (103)
T 2dng_A           12 TEPPYTAYVGNLPFNTVQGDIDAIFKD-------------LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD   76 (103)
T ss_dssp             SSSCEEEEEESCCTTCCHHHHHHHTTT-------------SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHh-------------CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC
Confidence            345789999999999999999999987             45 888999999999999999999999999999999 899


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        77 g~~~~------g~~l~V~~a~~~~   94 (103)
T 2dng_A           77 GALLG------DRSLRVDIAEGRK   94 (103)
T ss_dssp             TCEET------TEECEEEECCCCC
T ss_pred             CCeEC------CeEEEEEEecCCC
Confidence            99885      5688999998654

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=7.2e-12  Score=94.21  Aligned_cols=82  Identities=17%  Similarity=0.257  Sum_probs=73.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             + .+..+.|+.| .++.+.|||||.|.+.++|.++++ +|
T Consensus         7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-------------~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~   70 (91)
T 2dgw_A            7 GTTCHTVKLRGAPFNVTEKNVMEFLAP-------------L-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CN   70 (91)
T ss_dssp             CCCCCEEEEECCCSSCCHHHHHHHHTT-------------S-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SC
T ss_pred             CCCccEEEEECCCCCCCHHHHHHHHhh-------------C-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hC
Confidence            345679999999999999999999987             4 6788999999 889999999999999999999999 99


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        71 g~~~~------gr~i~v~~a~~~~   88 (91)
T 2dgw_A           71 REYMG------GRYIEVFREKSGP   88 (91)
T ss_dssp             SEEET------TEEEEEEEESSCC
T ss_pred             CceeC------CcEEEEEECCcCC
Confidence            99885      4589999998764

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.34  E-value=2.3e-12  Score=104.08  Aligned_cols=84  Identities=18%  Similarity=0.248  Sum_probs=75.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE--EEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF--LYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF--lYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ....+||+|+|||..+|+++|+++|..             +|.+..  +.|+.|..++.++|||||.|.+. +|.++++.
T Consensus        20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-------------~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~   85 (131)
T 2m2b_A           20 ENANDTIILRNLNPHSTMDSILGALAP-------------YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQI   85 (131)
T ss_dssp             SCCCCEEEECSCCTTCCSHHHHHHHGG-------------GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHH
Confidence            455789999999999999999999997             677877  99999999999999999999999 99999999


Q ss_pred             hcCC----cccccCCCCCceEEEEeccCcC
Q 037791          191 CNKY----KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       191 fnG~----~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +||.    .+.      .+.+.|.||+.+.
T Consensus        86 l~g~~~~~~~~------gr~l~V~~a~~~~  109 (131)
T 2m2b_A           86 LQALHPPLTID------GKTINVEFAKGSK  109 (131)
T ss_dssp             HTTCCCSCCGG------GCCCCCEECCCSC
T ss_pred             hcCCCCCccCC------CEEEEEEECCCCC
Confidence            9999    664      5578999998753

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.34  E-value=4.6e-12  Score=94.33  Aligned_cols=80  Identities=14%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++. +
T Consensus         8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~   73 (87)
T 3s7r_A            8 EEDAGKMFVGGLSWDTSKKDLKDYFTK-------------FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-K   73 (87)
T ss_dssp             CSCTTEEEEECCCTTCCHHHHHHHHTT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-S
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-C
Confidence            456789999999999999999999987             78899999999999999999999999999999999965 7


Q ss_pred             CCcccccCCCCCceEEEEec
Q 037791          193 KYKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyA  212 (295)
                      |+.+.      ++.+.|.+|
T Consensus        74 ~~~~~------g~~i~v~~A   87 (87)
T 3s7r_A           74 EHRLD------GRVIDPKKA   87 (87)
T ss_dssp             CEEET------TEEEEEEEC
T ss_pred             CCEEC------CEEEEEEeC
Confidence            77653      567888886

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.34  E-value=3.1e-12  Score=100.12  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=74.9

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.+++ .+||
T Consensus        23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g   88 (114)
T 2cq4_A           23 RDARTVFCMQLAARIRPRDLEDFFSA-------------VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG   88 (114)
T ss_dssp             HHHTEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC
Confidence            44679999999999999999999987             788999999999999999999999999999999999 9999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.+.      .+.+.|.||+.+
T Consensus        89 ~~~~------g~~l~V~~a~~~  104 (114)
T 2cq4_A           89 QRLL------GVPIIVQASQAE  104 (114)
T ss_dssp             EEET------TEEEEEEEHHHH
T ss_pred             CEeC------CeEEEEEecCCC
Confidence            9885      568999999754

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.34  E-value=2.5e-12  Score=93.32  Aligned_cols=75  Identities=19%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|.|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++ +||+.+.
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~   66 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQ-------------FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN   66 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHT-------------TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred             CEEEecCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence            5899999999999999999997             6889999999999999999999999999999999988 8999885


Q ss_pred             ccCCCCCceEEEEec
Q 037791          198 VEAPGNKKMCEIACA  212 (295)
Q Consensus       198 ~~~~gS~KiceVsyA  212 (295)
                            ++.+.|.||
T Consensus        67 ------g~~l~v~~A   75 (75)
T 2mss_A           67 ------NKMVECKKA   75 (75)
T ss_dssp             ------SCCCEEECC
T ss_pred             ------CEEEEEEeC
Confidence                  446788876

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.34  E-value=2.1e-12  Score=107.37  Aligned_cols=109  Identities=15%  Similarity=0.074  Sum_probs=75.5

Q ss_pred             ccccCCccCCcccccccCCccCCCCCCcccccCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC---c
Q 037791           80 AVTRPLTMRGKVVGHKRNLKWAPKNRDDVYGAMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE---F  156 (295)
Q Consensus        80 ~~~~p~~~~~~~~~~~r~~~~~p~~~~~~~~~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~---Y  156 (295)
                      -.+.|+.+.|+..+ +++..+..        ...+..++|.|+|||.+.|+++|+++|..             +|.   .
T Consensus        17 ~~~~~~~~~gg~~~-g~g~~~~~--------~~~~~~~~lfVgnLp~~~te~dL~~~F~~-------------~G~v~~v   74 (136)
T 2hgl_A           17 RGSHMASMTGGQQM-GRGSMMLG--------PEGGEGFVVKLRGLPWSCSVEDVQNFLSD-------------CTIHDGA   74 (136)
T ss_dssp             -------------------CCSC--------SSCCTTCEEEEESCCTTCCHHHHHHHTTT-------------CCCSSSS
T ss_pred             hccCCCcccCCCCC-CCCCCCCC--------CCCCCCCEEEEeCCCCCCCHHHHHHHHHH-------------hCCcCce
Confidence            45567777655221 23222221        13456789999999999999999999997             566   7


Q ss_pred             cEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEeccCcChH
Q 037791          157 DFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       157 DFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAriQGk~  218 (295)
                      ..+.|+.|.. +.++|||||.|.+.++|.++++ +||+.+.      .+.++|.+|.....+
T Consensus        75 ~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~------gr~i~V~~a~~~e~~  128 (136)
T 2hgl_A           75 AGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMG------HRYIEVFKSHRTEMD  128 (136)
T ss_dssp             TTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESS------SSEEEEEECCHHHHH
T ss_pred             eEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEEC------CEEEEEEECChHHHH
Confidence            8899999987 8999999999999999999999 9998875      457899998654433

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.33  E-value=4e-12  Score=98.33  Aligned_cols=85  Identities=19%  Similarity=0.209  Sum_probs=73.7

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC-ccEEEec-ccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE-FDFLYLP-MDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~-YDFlYLP-iDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ...+||.|.|||..+|+++|+++|.+             +|. +..+.++ .|..++.+.|||||.|.+.++|.++++.+
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~f~~-------------~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l   72 (109)
T 2dis_A            6 SGNCRLFIGGIPKMKKREEILEEIAK-------------VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL   72 (109)
T ss_dssp             CCSEEEEEECCCTTSCHHHHHHHHHH-------------HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHH-------------hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence            34689999999999999999999998             566 7788888 88888999999999999999999999999


Q ss_pred             c--CCcccccCCCCCceEEEEeccCcCh
Q 037791          192 N--KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       192 n--G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |  +..|.      .+.+.|.||+.+..
T Consensus        73 ~~g~~~~~------g~~l~V~~a~~~~~   94 (109)
T 2dis_A           73 MPGRIQLW------GHQIAVDWAEPEID   94 (109)
T ss_dssp             TTCCSCBT------TBCCEEEESCSSCS
T ss_pred             hCCCceec------CCeEEEEEcCCCCC
Confidence            6  47775      45789999987653

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.33  E-value=6.1e-12  Score=100.98  Aligned_cols=82  Identities=22%  Similarity=0.360  Sum_probs=75.3

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .|||+|+|||..+|+++|+++|..             +|.+..+.+..|..++.+.|||||.|.+.++|.++++.+||..
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~-------------~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~   68 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGS-------------IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR   68 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc
Confidence            589999999999999999999997             7889999999999899999999999999999999999999998


Q ss_pred             ccccCCCCCceEEEEeccCcC
Q 037791          196 WEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQG  216 (295)
                      +.      ++.+.|.||+.+.
T Consensus        69 ~~------g~~l~v~~~~~~~   83 (167)
T 1fxl_A           69 LQ------TKTIKVSYARPSS   83 (167)
T ss_dssp             ET------TEECEEEECCCCC
T ss_pred             cC------CceEEEEecCCCc
Confidence            85      4578899988654

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.33  E-value=1.2e-11  Score=96.10  Aligned_cols=82  Identities=13%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|.+             +|.+..+.++.+   +.+.|||||.|.+.++|.++++.+|
T Consensus        19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~   82 (109)
T 1x4a_A           19 GNNDCRIYVGNLPPDIRTKDIEDVFYK-------------YGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRD   82 (109)
T ss_dssp             CCCSSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcC
Confidence            445689999999999999999999998             678888888665   4478999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        83 g~~~~------g~~l~V~~a~~~~  100 (109)
T 1x4a_A           83 GYDYD------GYRLRVEFPRSGR  100 (109)
T ss_dssp             TCEET------TEECEEECCCCCC
T ss_pred             CCEEC------CeEEEEEEcccCC
Confidence            99885      5689999998754

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.33  E-value=2e-12  Score=93.77  Aligned_cols=76  Identities=16%  Similarity=0.204  Sum_probs=68.8

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      |||.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.++ ..+
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~   66 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQ-------------FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL   66 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTT-------------TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence            68999999999999999999987             6888999999999999999999999999999999999998 666


Q ss_pred             cccCCCCCceEEEEec
Q 037791          197 EVEAPGNKKMCEIACA  212 (295)
Q Consensus       197 ~~~~~gS~KiceVsyA  212 (295)
                      .      ++.+.|.||
T Consensus        67 ~------g~~l~v~~a   76 (77)
T 1uaw_A           67 D------SKTIDPKVA   76 (77)
T ss_dssp             S------SCCCEEEEC
T ss_pred             C------CEEEEEEec
Confidence            4      456788877

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.33  E-value=9.7e-13  Score=98.58  Aligned_cols=81  Identities=9%  Similarity=0.134  Sum_probs=70.9

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      +||.|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.+ |.++++.+||..+
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~   67 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQ-------------FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF   67 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHH-------------HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC
T ss_pred             cEEEECCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE
Confidence            68999999999999999999998             678899999999999999999999999999 9999999999998


Q ss_pred             cccCCCCCceEEEEeccCcCh
Q 037791          197 EVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQGk  217 (295)
                      .      ++.+.|.||..+..
T Consensus        68 ~------g~~l~V~~a~~~~~   82 (90)
T 2ki2_A           68 M------GRTIRVTEANPKKS   82 (90)
T ss_dssp             S------SSSCSEEEC-----
T ss_pred             C------CeEEEEEEcCCCCC
Confidence            5      45789999986543

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.32  E-value=9.1e-12  Score=95.61  Aligned_cols=83  Identities=14%  Similarity=0.327  Sum_probs=73.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||+|.|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.+.++|.++++  +
T Consensus        12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~   76 (103)
T 2cqg_A           12 VQKTSDLIVLGLPWKTTEQDLKEYFST-------------FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--Q   76 (103)
T ss_dssp             CCCCCCEEEESCCSSCCHHHHHHHHGG-------------GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--S
T ss_pred             cCCCCEEEEEcCCCcCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--c
Confidence            455789999999999999999999987             6889999999999999999999999999999999998  4


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ++.+.      .+.+.|.||+.+.
T Consensus        77 ~~~~~------g~~l~v~~a~~~~   94 (103)
T 2cqg_A           77 RHMID------GRWCDCKLPNSKQ   94 (103)
T ss_dssp             CEEET------TEEEEEECCCTTC
T ss_pred             CCeeC------CeEEEEEecCCCC
Confidence            66553      5689999998654

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.32  E-value=4.6e-12  Score=99.46  Aligned_cols=83  Identities=14%  Similarity=0.132  Sum_probs=75.6

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      +..+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++. ||
T Consensus        25 ~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~   90 (116)
T 1x4b_A           25 EQFRKLFIGGLSFETTEESLRNYYEQ-------------WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP   90 (116)
T ss_dssp             HHHTEEEEECCTTCCCHHHHHHHHTS-------------SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC
Confidence            44689999999999999999999987             78899999999999999999999999999999999998 99


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +.+.      .+.+.|.||+.+.
T Consensus        91 ~~~~------g~~l~V~~a~~~~  107 (116)
T 1x4b_A           91 HSID------GRVVEPKRAVARE  107 (116)
T ss_dssp             EEET------TEEEEEECCSSCC
T ss_pred             cEEC------CEEEEEEECCCCc
Confidence            8875      5689999998764

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=4.3e-12  Score=97.39  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|...            +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~------------~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~   72 (104)
T 2dhg_A            6 SGPEYSLFVGDLTPDVDDGMLYEFFVKV------------YPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQ   72 (104)
T ss_dssp             SSCCCCEEEECCCTTCCHHHHHHHHHHH------------CTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHh------------CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHcc
Confidence            4456899999999999999999999972            5778889999998 89999999999999999999999999


Q ss_pred             CCc-ccccCCCCCceEEEEeccCcC
Q 037791          193 KYK-WEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~-w~~~~~gS~KiceVsyAriQG  216 (295)
                      |.. +.      .+.+.|.||+.+.
T Consensus        73 g~~~~~------g~~l~v~~a~~~~   91 (104)
T 2dhg_A           73 GAVGLG------SKPVRLSVAIPKA   91 (104)
T ss_dssp             TCCSSS------SSCCCCCBCCCCC
T ss_pred             CCcccC------CEeEEEEEccCCC
Confidence            998 64      4468899987553

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.32  E-value=4.6e-12  Score=96.97  Aligned_cols=77  Identities=12%  Similarity=0.154  Sum_probs=69.8

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      |||.|.|||..+|+++|+++|.+             +|.+..+.++.|     +.|||||.|.+.++|.++++.+||..+
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~   62 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSY-------------YGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI   62 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHH-------------HCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE
Confidence            79999999999999999999998             678889999988     689999999999999999999999987


Q ss_pred             cccCCCCCceEEEEeccCcCh
Q 037791          197 EVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQGk  217 (295)
                      .      .+.+.|.||+.+..
T Consensus        63 ~------g~~l~V~~a~~~~~   77 (101)
T 2hvz_A           63 C------GSRVRVELSTGMPR   77 (101)
T ss_dssp             S------SCCCEEEESSSCCC
T ss_pred             C------CcEEEEEEccCCCC
Confidence            5      45689999987763

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.32  E-value=1.5e-11  Score=105.46  Aligned_cols=84  Identities=18%  Similarity=0.196  Sum_probs=76.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|.+             +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+|
T Consensus        85 ~~~~~~l~V~nLp~~~te~~L~~~F~~-------------~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~ln  150 (177)
T 2f3j_A           85 VETGAKLLVSNLDFGVSDADIQELFAE-------------FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK  150 (177)
T ss_dssp             CTTCEEEEEECCCSCCCHHHHHHHHHH-------------TSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence            455789999999999999999999998             7889999999998 89999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||....
T Consensus       151 g~~l~------Gr~l~V~~a~~~~  168 (177)
T 2f3j_A          151 GVPLD------GRPMDIQLVASQI  168 (177)
T ss_dssp             TCBCS------SSBCEEEEESSGG
T ss_pred             CCEEC------CEEEEEEEecCCC
Confidence            99885      4578999997654

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.31  E-value=8.8e-12  Score=99.96  Aligned_cols=82  Identities=16%  Similarity=0.209  Sum_probs=75.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....++|.|+|||..+|+++|+++|..             +|.+..+.+..|..++.+.|||||.|.+.++|.++++.+|
T Consensus        84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~  150 (166)
T 3md3_A           84 SDDTFNLFVGDLNVNVDDETLRNAFKD-------------FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ  150 (166)
T ss_dssp             CTTCEEEEEESCCTTCCHHHHHHHHTT-------------STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCCCHHHHHHHHhc-------------cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence            455789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEecc
Q 037791          193 KYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAr  213 (295)
                      |..+.      ++.+.|.||+
T Consensus       151 g~~~~------g~~i~v~~a~  165 (166)
T 3md3_A          151 GQDLN------GRPLRINWAA  165 (166)
T ss_dssp             TCEET------TEECEEEESC
T ss_pred             CCccC------CcEEEEEecC
Confidence            99985      5689999996

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.31  E-value=5.8e-12  Score=105.36  Aligned_cols=86  Identities=20%  Similarity=0.228  Sum_probs=77.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||.|.|||..+|+++|.++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|..+++.+||
T Consensus        70 ~~~~~l~V~nLp~~~t~~~L~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g  136 (165)
T 1rk8_A           70 VEGWILFVTSIHEEAQEDEIQEKFCD-------------YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG  136 (165)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhc-------------CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC
Confidence            44679999999999999999999987             78899999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcChH
Q 037791          194 YKWEVEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQGk~  218 (295)
                      ..|.      .+.+.|.||..++..
T Consensus       137 ~~~~------g~~l~V~~a~~~~~~  155 (165)
T 1rk8_A          137 AEIM------GQTIQVDWCFVKGPK  155 (165)
T ss_dssp             CEET------TEECEEEESEECC--
T ss_pred             CEEC------CEEEEEEEecCCCCC
Confidence            9885      568999999887753

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.31  E-value=1.3e-11  Score=93.97  Aligned_cols=80  Identities=10%  Similarity=0.079  Sum_probs=68.8

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      +..+||.|.|||..+|+++|+++|.+             +|.+..+.+..+      .|||||.|.+.++|.++++.+||
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g   75 (97)
T 1why_A           15 NPTTRLWVGGLGPNTSLAALAREFDR-------------FGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRG   75 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHT-------------TSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCC
Confidence            34579999999999999999999998             677777777654      68999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..+..    ..+.+.|.||+.+.
T Consensus        76 ~~~~~----~g~~l~V~~a~~~~   94 (97)
T 1why_A           76 FPLGG----PDRRLRVDFAKSGP   94 (97)
T ss_dssp             CBCSS----SSCBCEEEECCCCC
T ss_pred             CEeCC----CCcEEEEEECCCCC
Confidence            98852    24578999998764

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.31  E-value=7.2e-12  Score=101.21  Aligned_cols=82  Identities=24%  Similarity=0.424  Sum_probs=75.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||+|+|||..+|+++|+++|..             +|.+..+.+..|..++.+.|||||.|.+.++|.++++.+||..
T Consensus         3 ~~~l~v~nlp~~~~~~~l~~~f~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~   69 (168)
T 1b7f_A            3 NTNLIVNYLPQDMTDRELYALFRA-------------IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT   69 (168)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHh-------------cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE
Confidence            579999999999999999999987             7889999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCceEEEEeccCcC
Q 037791          196 WEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQG  216 (295)
                      +.      ++.+.|.||..++
T Consensus        70 ~~------g~~l~v~~~~~~~   84 (168)
T 1b7f_A           70 VR------NKRLKVSYARPGG   84 (168)
T ss_dssp             ET------TEECEEEECCCCS
T ss_pred             eC------CcEEEEEecCCCc
Confidence            85      4578999998665

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.30  E-value=8.4e-12  Score=97.99  Aligned_cols=83  Identities=20%  Similarity=0.246  Sum_probs=73.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++.|..  .+.|||||.|.+.++|.++++.+|
T Consensus        26 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~   90 (109)
T 2err_A           26 KSQPKRLHVSNIPFRFRDPDLRQMFGQ-------------FGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLH   90 (109)
T ss_dssp             TTCCCEEEEESCCTTCCHHHHHHHGGG-------------TCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCcCCHHHHHHHHHh-------------cCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcC
Confidence            455779999999999999999999987             78888899999853  388999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      ++.+.|.||+.+.
T Consensus        91 g~~~~------g~~l~V~~a~~~~  108 (109)
T 2err_A           91 GTVVE------GRKIEVNNATARV  108 (109)
T ss_dssp             TCEET------TEECEEEECCCSC
T ss_pred             CCEEC------CEEEEEEECCCCc
Confidence            99985      5689999998653

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.30  E-value=6.3e-12  Score=97.87  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             cCCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          111 AMLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       111 ~~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ......+||.|.|||..+|+++|+++|..             +|.+..+.|..|      .|||||.|.+.++|.++++.
T Consensus        20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~-------------~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~   80 (109)
T 1x4g_A           20 QSSPKNCTVYCGGIASGLTDQLMRQTFSP-------------FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVS   80 (109)
T ss_dssp             HSCSSCCEEEEECCSSCCCHHHHHHHHHH-------------HSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHH
Confidence            34566789999999999999999999998             678888888877      69999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEeccCcCh
Q 037791          191 CNKYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      +||..|.      .+.+.|.||+.+..
T Consensus        81 l~g~~~~------g~~l~v~~a~~~~~  101 (109)
T 1x4g_A           81 VNGTTIE------GHVVKCYWGKESPD  101 (109)
T ss_dssp             HTTCEET------TEECEEECCCCCCS
T ss_pred             cCCCEEC------CcEEEEEecCCCCC
Confidence            9999885      56899999987753

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=99.30  E-value=6.9e-12  Score=99.55  Aligned_cols=86  Identities=20%  Similarity=0.331  Sum_probs=74.4

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEe-cccccCCc-ceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYL-PMDFRRRA-NLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYL-PiDf~t~~-N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      |.|.||+||..+|+++|.++|+.             ..++||+|. +-+...+. -.+.|||||++.+++..|.+.|+|+
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~-------------~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~   68 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQP-------------MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY   68 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCS-------------CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcC-------------cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence            78999999999999999999987             457888864 55555443 3499999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .|.+.+ |..-.+.|+||..|.
T Consensus        69 ~F~D~k-g~~~~a~VE~AP~qk   89 (91)
T 1uw4_A           69 VFLDNK-GQEYPAIVEFAPFQK   89 (91)
T ss_dssp             EEECTT-CCEEECEEEECSSCC
T ss_pred             EEEcCC-CCEeeeEEEEcCCCc
Confidence            999887 667789999999996

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.29  E-value=1.3e-11  Score=98.57  Aligned_cols=92  Identities=16%  Similarity=0.122  Sum_probs=77.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC---ccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE---FDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK  189 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~---YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~  189 (295)
                      .+..+||.|+|||...|+++|+++|..             +|.   +..+.|+.|.. +.++|||||.|.+.++|.++++
T Consensus        14 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~   79 (118)
T 2db1_A           14 GGEGYVVKLRGLPWSCSIEDVQNFLSD-------------CTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK   79 (118)
T ss_dssp             BCCCCEEEEESCCTTCCHHHHHHHTTT-------------SCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHH-------------cCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh
Confidence            455789999999999999999999987             455   78899999977 8899999999999999999999


Q ss_pred             HhcCCcccccCCCCCceEEEEeccCcChHHHHHHhc
Q 037791          190 ACNKYKWEVEAPGNKKMCEIACADIQGRDALEKHFE  225 (295)
Q Consensus       190 ~fnG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFr  225 (295)
                       +||+.+.      .+.++|.+|..+..+...++.+
T Consensus        80 -~~g~~~~------gr~i~V~~a~~~~~~~~~~~~~  108 (118)
T 2db1_A           80 -KDRESMG------HRYIEVFKSHRTEMDWVLKHSG  108 (118)
T ss_dssp             -GTTEEET------TEEEEEEEECHHHHHHHHHTTS
T ss_pred             -cCCCeEC------CeEEEEEECCHHHHHHHHHHhC
Confidence             9998875      5589999997655555555444

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.29  E-value=5.4e-12  Score=100.74  Aligned_cols=85  Identities=9%  Similarity=0.076  Sum_probs=72.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.+.+|..++.+.|||||.|.+.++|.++++ +|
T Consensus        22 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~   87 (124)
T 1wel_A           22 HEAGFCVYLKGLPFEAENKHVIDFFKK-------------LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH   87 (124)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCS-------------SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC
Confidence            345689999999999999999999987             5666555566677789999999999999999999999 99


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |+.+.      .+.+.|.||..+..
T Consensus        88 g~~~~------gr~i~V~~a~~~~~  106 (124)
T 1wel_A           88 KQYMG------NRFIQVHPITKKGM  106 (124)
T ss_dssp             SBCST------TSCBEEEEECHHHH
T ss_pred             CCeEC------CcEEEEEECCHHHH
Confidence            98885      45789999987654

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.28  E-value=1.3e-11  Score=93.48  Aligned_cols=81  Identities=15%  Similarity=0.279  Sum_probs=68.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+     ..++.+.|||||.|.+.++|.++++.+|
T Consensus        13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-------------~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~   74 (96)
T 1fjc_A           13 VRAARTLLAKNLSFNITEDELKEVFED-------------ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ   74 (96)
T ss_dssp             TTGGGEEEEESCCSSCCHHHHHHHHCS-------------EEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhh-------------CCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence            345789999999999999999999987             3444333     4567889999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..|.      ++.+.|.||+.++.
T Consensus        75 g~~~~------g~~l~v~~a~~~~~   93 (96)
T 1fjc_A           75 GAEID------GRSVSLYYTGEKGG   93 (96)
T ss_dssp             EEEET------TEEEEEEECSSSCC
T ss_pred             CCEEC------CeEEEEEEcCCCCC
Confidence            99885      56899999987653

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.28  E-value=1.7e-11  Score=99.06  Aligned_cols=82  Identities=21%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus        87 ~~~~~l~v~nl~~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g  153 (168)
T 1b7f_A           87 IKDTNLYVTNLPRTITDDQLDTIFGK-------------YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN  153 (168)
T ss_dssp             TTTCEEEEESCCTTCCHHHHHHHHTS-------------SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhhc-------------CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence            45679999999999999999999987             78899999999998999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEec
Q 037791          194 YKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyA  212 (295)
                      ..+.    |..+.+.|.||
T Consensus       154 ~~~~----g~~~~l~V~~A  168 (168)
T 1b7f_A          154 VIPE----GGSQPLSVRLA  168 (168)
T ss_dssp             CCCT----TCSSCCEEEEC
T ss_pred             CEec----CCCeEEEEEeC
Confidence            9885    24568899987

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.7e-11  Score=92.18  Aligned_cols=78  Identities=13%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++        .|||||.|.+.++|.++++.+|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~   63 (90)
T 2dnq_A            5 SSGMVKLFIGNLPREATEQEIRSLFEQ-------------YGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLH   63 (90)
T ss_dssp             SSCCEEEEEESCCSSCCHHHHHHHHHT-------------SSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhc
Confidence            455789999999999999999999998             6778777776        5899999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      .+.+.|.||+.+..
T Consensus        64 g~~~~------g~~l~v~~a~~~~~   82 (90)
T 2dnq_A           64 HYKLH------GVNINVEASKNKSK   82 (90)
T ss_dssp             TCBCS------SCBCEEECSSCCCC
T ss_pred             CCccC------CcEEEEEECCCCCC
Confidence            99885      45789999987654

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.28  E-value=8.9e-12  Score=98.62  Aligned_cols=82  Identities=12%  Similarity=0.150  Sum_probs=74.6

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.+++ .+||+
T Consensus        35 ~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~  100 (124)
T 2jwn_A           35 DKRSVYVGNVDYGSTAQDLEAHFSS-------------CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET  100 (124)
T ss_dssp             HHTEEEEEEECTTCCHHHHHHHHHT-------------TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence            4679999999999999999999997             788999999999989999999999999999999999 89999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      ++.+.|.||+.+.
T Consensus       101 ~~~------g~~l~V~~a~~~~  116 (124)
T 2jwn_A          101 VFR------GRTIKVLPKRTNM  116 (124)
T ss_dssp             EET------TEECEEEESSCCC
T ss_pred             eEC------CeEEEEEECCCCC
Confidence            985      5689999998653

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.28  E-value=1.7e-11  Score=98.30  Aligned_cols=82  Identities=16%  Similarity=0.215  Sum_probs=74.0

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus        86 ~~~~~l~v~nl~~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g  152 (167)
T 1fxl_A           86 IRDANLYVSGLPKTMTQKELEQLFSQ-------------YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG  152 (167)
T ss_dssp             GTTCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCcEEECCCCCcCCHHHHHHHHHh-------------cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence            34679999999999999999999997             68899999999998999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEec
Q 037791          194 YKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyA  212 (295)
                      ..+.    |....+.|.||
T Consensus       153 ~~~~----g~~~~i~v~~A  167 (167)
T 1fxl_A          153 QKPS----GATEPITVKFA  167 (167)
T ss_dssp             CCCT----TCSSCCEEEEC
T ss_pred             CccC----CCccceEEEeC
Confidence            9886    24456899997

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.27  E-value=8.6e-12  Score=94.35  Aligned_cols=84  Identities=20%  Similarity=0.252  Sum_probs=71.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHH----HHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLL----HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW  188 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll----~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~  188 (295)
                      ....+||.|+|||..+|+++|+    ++|..             +|.+..+.++   .++.+.|||||.|.+.++|.+++
T Consensus         5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-------------~G~i~~v~i~---~~~~~~g~afV~f~~~~~A~~A~   68 (97)
T 1nu4_A            5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSR-------------FGQILDILVS---RSLKMRGQAFVIFKEVSSATNAL   68 (97)
T ss_dssp             -CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-------------GSCEEEEECC---HHHHHTTCEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-------------CCCEEEEEEE---cCCCcCcEEEEEeCCHHHHHHHH
Confidence            3456799999999999999999    77766             6777777776   35678899999999999999999


Q ss_pred             HHhcCCcccccCCCCCceEEEEeccCcChH
Q 037791          189 KACNKYKWEVEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       189 ~~fnG~~w~~~~~gS~KiceVsyAriQGk~  218 (295)
                      +.+||..+.      ++.+.|.||+.+...
T Consensus        69 ~~l~g~~~~------g~~l~v~~a~~~~~~   92 (97)
T 1nu4_A           69 RSMQGFPFY------DKPMRIQYAKTDSDI   92 (97)
T ss_dssp             HHHTTCEET------TEECEEEECSSCCTH
T ss_pred             HHhCCCEEC------CcEEEEEEccCCCcc
Confidence            999999884      568999999987654

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.27  E-value=2.3e-11  Score=92.95  Aligned_cols=79  Identities=13%  Similarity=0.246  Sum_probs=69.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||+|.|||..+|+++|+++|.+             +|.+..+.++.|      +|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~   72 (99)
T 2cpj_A           12 FTQRSRLFVGNLPPDITEEEMRKLFEK-------------YGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELD   72 (99)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHHTST-------------TCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhh-------------cCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhC
Confidence            344679999999999999999999987             678888888754      6999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.+.|.||+.+.
T Consensus        73 g~~~~------g~~l~v~~a~~~~   90 (99)
T 2cpj_A           73 NMPLR------GKQLRVRFACHSA   90 (99)
T ss_dssp             TCCBT------TBCCEEEESSCCS
T ss_pred             CCEeC------CceEEEEEcCCCC
Confidence            99985      4578999998654

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.27  E-value=9.5e-12  Score=98.20  Aligned_cols=83  Identities=18%  Similarity=0.243  Sum_probs=73.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCc-cEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEF-DFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~Y-DFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.. +.+.|+.|. ++.+.|||||.|.+.++|.++++. 
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-   76 (114)
T 2cpy_A           12 NSAKVCAHITNIPFSITKMDVLQFLEG-------------IPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-   76 (114)
T ss_dssp             CSCCCEEEEESCCTTSCHHHHHHHTTT-------------SCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-
T ss_pred             CCCccEEEEeCcCCcCCHHHHHHHHHh-------------CCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-
Confidence            345679999999999999999999987             5777 789999998 899999999999999999999988 


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ||+.+.      .+.+.|.||..+-
T Consensus        77 ~~~~~~------gr~i~v~~a~~~~   95 (114)
T 2cpy_A           77 HRKKLN------GREAFVHVVTLED   95 (114)
T ss_dssp             CSEEET------TEEEEEEEECHHH
T ss_pred             CCCccC------CeEEEEEECCHHH
Confidence            998875      5689999997543

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.27  E-value=6.9e-12  Score=95.99  Aligned_cols=83  Identities=14%  Similarity=0.105  Sum_probs=70.6

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..++.             ... .+.+|..++.++|||||.|.+.++|.++++ +|
T Consensus        14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-------------v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~   78 (101)
T 1fj7_A           14 STTPFNLFIGNLNPNKSVAELKVAISELFA-------------KND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT   78 (101)
T ss_dssp             CSCSEEEEEECCCTTSCHHHHHHHHHHHHH-------------HHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC-------------cce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC
Confidence            345679999999999999999999998543             333 567888889999999999999999999999 99


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        79 g~~~~------g~~l~V~~a~~~~   96 (101)
T 1fj7_A           79 GLKVF------GNEIKLEKPKGRD   96 (101)
T ss_dssp             GCCBT------TBCCEEECCSCCC
T ss_pred             CcEEC------CcEEEEEEcCCCC
Confidence            99986      4578999998654

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.27  E-value=5.9e-12  Score=91.08  Aligned_cols=75  Identities=16%  Similarity=0.329  Sum_probs=66.5

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      ||.|+|||..+|+++|+++|.+             +|.+..+.++.|..++.+.|||||.|.+.++|.++++. +|+.+.
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~   66 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGG-------------FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG   66 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHH-------------HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT
T ss_pred             CEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC
Confidence            6899999999999999999998             67888899999999999999999999999999999985 777764


Q ss_pred             ccCCCCCceEEEEec
Q 037791          198 VEAPGNKKMCEIACA  212 (295)
Q Consensus       198 ~~~~gS~KiceVsyA  212 (295)
                            ++.+.|.+|
T Consensus        67 ------g~~l~v~~a   75 (75)
T 1iqt_A           67 ------LSKCEIKVA   75 (75)
T ss_dssp             ------TBCCCEEEC
T ss_pred             ------CEEEEEEEC
Confidence                  446677765

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.3e-11  Score=94.39  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|.+             +|.+..+.+.      .+.|||||.|.+.++|.++++.+|
T Consensus        24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-------------~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~   84 (101)
T 2la4_A           24 PPRVTTAYIGNIPHFATEADLIPLFQN-------------FGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALA   84 (101)
T ss_dssp             CSSCCEEEEESCCTTCCHHHHHHHHHT-------------TSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEcCCCcccCHHHHHHHHHh-------------CCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhC
Confidence            344689999999999999999999998             6777777776      457999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..|.      ++.+.|.||+.+
T Consensus        85 g~~~~------g~~l~V~~a~~~  101 (101)
T 2la4_A           85 NFPFQ------GRNLRTGWGKER  101 (101)
T ss_dssp             TCEET------TEECCCCBCCCC
T ss_pred             CCeEC------CeEEEEEeccCC
Confidence            99985      457899999754

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.26  E-value=2.2e-11  Score=95.24  Aligned_cols=80  Identities=14%  Similarity=0.174  Sum_probs=70.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|+|||..+|+++|.++|..             +|.+..+.++.|-   .+.|||||.|.+.++|.++++.+|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~   68 (115)
T 3lqv_A            5 PEVNRILYIRNLPYKITAEEMYDIFGK-------------YGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLS   68 (115)
T ss_dssp             TTCCSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcC
Confidence            445679999999999999999999997             7888889998764   348999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      |..+.      ++.+.|.||+.
T Consensus        69 g~~~~------g~~l~v~~a~~   84 (115)
T 3lqv_A           69 GFNVS------NRYLVVLYYNA   84 (115)
T ss_dssp             TCBSS------SCBCEEEECCH
T ss_pred             CCEEC------CeEEEEEEecC
Confidence            99985      45789999985

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3e-11  Score=92.17  Aligned_cols=80  Identities=18%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|.+             +|.+. +.+.    ++.+.|||||.|.+.++|.++++.+|
T Consensus        16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-------------~G~v~-~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~   77 (97)
T 2e5j_A           16 APLAADVYVGNLPRDARVSDLKRALRE-------------LGSVP-LRLT----WQGPRRRAFLHYPDSAAAQQAVSCLQ   77 (97)
T ss_dssp             SCCCCEEEEECCCTTCCHHHHHHHHHH-------------TTCCC-SEEE----EETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCcCcHHHHHHHHHh-------------cCCEE-EEEE----cCCCCcEEEEEECCHHHHHHHHHHhC
Confidence            455779999999999999999999998             45554 2333    24678999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        78 g~~~~------g~~l~V~~a~~~~   95 (97)
T 2e5j_A           78 GLRLG------TDTLRVALARQQR   95 (97)
T ss_dssp             TCCSS------SSCCEEEECCCCC
T ss_pred             CCEEC------CcEEEEEEcCCCC
Confidence            99985      4578999998765

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.26  E-value=2.4e-11  Score=102.15  Aligned_cols=83  Identities=12%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus       123 ~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g  189 (216)
T 2qfj_A          123 RAFNRIYVASVHQDLSDDDIKSVFEA-------------FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL  189 (216)
T ss_dssp             TTSCEEEEECCCTTCCHHHHHHHHTT-------------SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCcEEEEeCCCCcCCHHHHHHHHhc-------------cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC
Confidence            45679999999999999999999987             78999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ..+.      ++.+.|.||...
T Consensus       190 ~~~~------g~~i~V~~a~~~  205 (216)
T 2qfj_A          190 FDLG------GQYLRVGKAVTP  205 (216)
T ss_dssp             CBCS------SSBCEEEECSSC
T ss_pred             CEeC------CcEEEEEEecCC
Confidence            9885      457899999865

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.25  E-value=7.9e-12  Score=98.23  Aligned_cols=85  Identities=9%  Similarity=0.149  Sum_probs=74.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHH---HHHhhhchhhhhcccCccCCCccEEEecccccC---CcceeeEEEecCCHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLL---HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR---RANLGYAFVNFTTAAGALR  186 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll---~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t---~~N~GYAFVNF~spedA~~  186 (295)
                      ....+||.|.|||..+|+++|+   ++|..             +|.+..+.++.|..+   +.+.|||||.|.+.++|.+
T Consensus        12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-------------~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~   78 (111)
T 2cpi_A           12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGK-------------FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALR   78 (111)
T ss_dssp             CCCSSCEEEEEECTTTCCHHHHHSTTTTTT-------------TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHhhc-------------cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHH
Confidence            3447799999999999999999   88877             788999999988764   4566999999999999999


Q ss_pred             HHHHhcCCcccccCCCCCceEEEEeccCcC
Q 037791          187 FWKACNKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       187 F~~~fnG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +++.+||+.+.      .+.+.|.||+.+.
T Consensus        79 Ai~~lng~~~~------gr~l~V~~a~~k~  102 (111)
T 2cpi_A           79 AIQCVNNVVVD------GRTLKASLGTTKY  102 (111)
T ss_dssp             HHHHHTTEEET------TEEEEEESCCCCS
T ss_pred             HHHHhCCCEEC------CEEEEEEeccccc
Confidence            99999999985      5689999998764

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.25  E-value=1.9e-11  Score=99.38  Aligned_cols=81  Identities=20%  Similarity=0.212  Sum_probs=74.3

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||
T Consensus        92 ~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g  158 (172)
T 2g4b_A           92 PGAHKLFIGGLPNYLNDDQVKELLTS-------------FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG  158 (172)
T ss_dssp             TTTTCEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHh-------------cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence            34689999999999999999999997             78899999999998999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEecc
Q 037791          194 YKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAr  213 (295)
                      ..+.      ++.+.|.||.
T Consensus       159 ~~~~------g~~l~V~~As  172 (172)
T 2g4b_A          159 MQLG------DKKLLVQRAS  172 (172)
T ss_dssp             CEET------TEECEEEECC
T ss_pred             CEEC------CeEEEEEeCC
Confidence            9885      5688999983

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.24  E-value=1.1e-11  Score=110.34  Aligned_cols=86  Identities=14%  Similarity=0.080  Sum_probs=77.0

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC--CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS--EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G--~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ..|||.|.|||..+|+++|+++|..             +|  .+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~-------------~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln  133 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHS-------------LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP  133 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHT-------------TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHH-------------HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence            5789999999999999999999987             67  88999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcChHH
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGRDA  219 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk~a  219 (295)
                      |+.|.      .+.+.|.||+.|....
T Consensus       134 g~~~~------Gr~l~V~~a~~~~~~~  154 (229)
T 3q2s_C          134 KRELH------GQNPVVTPVNKQFLSQ  154 (229)
T ss_dssp             TSCBT------TBCCEEEECCHHHHHH
T ss_pred             CCeEC------CEEeEEEECCCCccch
Confidence            99985      5579999998776543

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.24  E-value=2.2e-11  Score=91.86  Aligned_cols=78  Identities=19%  Similarity=0.258  Sum_probs=65.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCC-ccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSE-FDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~-YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .+..+||.|.|||..+|+++|+++|..             +|. .+.+.+       .+.|||||.|.+.++|.++++.+
T Consensus         5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l   64 (93)
T 2cqh_A            5 SSGMNKLYIGNLSPAVTADDLRQLFGD-------------RKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETL   64 (93)
T ss_dssp             CCCCCCEEEECCCTTCCHHHHHHHHHH-------------TTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHH-------------cCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHc
Confidence            345689999999999999999999998             455 555554       25799999999999999999999


Q ss_pred             cC-CcccccCCCCCceEEEEeccCcC
Q 037791          192 NK-YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG-~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      || ..+.      .+.+.|.||+.+.
T Consensus        65 ~g~~~~~------g~~l~v~~a~~~~   84 (93)
T 2cqh_A           65 SGKVELH------GKIMEVDYSVSKK   84 (93)
T ss_dssp             TTTCEET------TEECEEEECCCCC
T ss_pred             cCCeeEC------CEEEEEEEccCcc
Confidence            99 7774      5689999998764

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.24  E-value=3.5e-11  Score=97.53  Aligned_cols=85  Identities=18%  Similarity=0.232  Sum_probs=74.7

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCC--cceeeEEEecCCHHHHHHHHHHhc
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRR--ANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~--~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      +.+||.|+|||..+|+++|+++|..             +|.+..+.++.|..++  .+.|||||.|.+.++|.++++.+|
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~   68 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQ-------------YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH   68 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence            4679999999999999999999997             7889999999999887  899999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..+...   ..+.+.+.++..+
T Consensus        69 ~~~~~~~---~~~~~~~~~~~~~   88 (175)
T 3nmr_A           69 NMKVLPG---MHHPIQMKPADSE   88 (175)
T ss_dssp             TTCCCTT---CSSCCEEEECGGG
T ss_pred             CcEEccC---CccceEEcccccc
Confidence            9887532   3567778877644

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.23  E-value=6e-11  Score=90.62  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..++           .|.+..+.++        .|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-----------~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~   72 (99)
T 2cpd_A           12 MSSVKILYVRNLMLSTSEEMIEKEFNNIK-----------PGAVERVKKI--------RDYAFVHFSNREDAVEAMKALN   72 (99)
T ss_dssp             SSCCCEEEEESCCTTCCHHHHHHHHHTTS-----------TTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHS
T ss_pred             cCCcCEEEEeCCCCCCCHHHHHHHHHhcC-----------CcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhC
Confidence            44568999999999999999999999842           1666666654        5899999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      .+.+.|.||+.+.+
T Consensus        73 g~~~~------g~~l~v~~a~~~~~   91 (99)
T 2cpd_A           73 GKVLD------GSPIEVTLAKPVDK   91 (99)
T ss_dssp             SEEET------TEEEEEECCCCCCC
T ss_pred             CCEeC------CcEEEEEECCCCCC
Confidence            99885      56899999987654

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.23  E-value=2.3e-11  Score=95.71  Aligned_cols=85  Identities=15%  Similarity=0.170  Sum_probs=71.6

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ..+..+||.|.|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+
T Consensus        21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-------------~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~   87 (109)
T 2rs2_A           21 MGSSGCKMFIGGLSWQTTQEGLREYFGQ-------------FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS   87 (109)
T ss_dssp             -----CCEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHc-------------cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence            3456789999999999999999999987             788999999999999999999999999999999999986


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                       |..+.      ++.+.|.||..+.
T Consensus        88 -~~~l~------g~~l~V~~a~~~~  105 (109)
T 2rs2_A           88 -RHELD------SKTIDPKVAFPRR  105 (109)
T ss_dssp             -CEEET------TEEEEEEECCCCC
T ss_pred             -CCcCC------CEEEEEEEccCCC
Confidence             45553      5688999997653

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.23  E-value=3.8e-11  Score=94.64  Aligned_cols=78  Identities=19%  Similarity=0.323  Sum_probs=68.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.+.        .|||||.|.+.++|.++++.+|
T Consensus        28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-------------~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~   86 (108)
T 2jvo_A           28 ELSNTRLFVRPFPLDVQESELNEIFGP-------------FGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVH   86 (108)
T ss_dssp             CCSCSEEEECSSCTTCCHHHHHHHHTT-------------TSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcC
Confidence            455789999999999999999999987             6778878776        6999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      ++.+.|.||+.+.+
T Consensus        87 g~~~~------g~~l~V~~a~~~~~  105 (108)
T 2jvo_A           87 GKSFA------NQPLEVVYSKLPAK  105 (108)
T ss_dssp             TCEET------TEECEEESCSCCC-
T ss_pred             CCEEC------CeEEEEEEecCCCC
Confidence            99984      56899999998764

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.23  E-value=4.1e-11  Score=92.38  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=67.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++        .|||||.|.+.++|.++++.+|
T Consensus         8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-------------~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~   66 (103)
T 2dgu_A            8 MAKVKVLFVRNLANTVTEEILEKAFSQ-------------FGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN   66 (103)
T ss_dssp             CCCCCCEEEECCCTTCCHHHHHHHHHH-------------HSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC
Confidence            455689999999999999999999998             5677777776        4699999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |+.+.      .+.+.|.||+.+..
T Consensus        67 g~~~~------g~~l~v~~a~~~~~   85 (103)
T 2dgu_A           67 GKDLE------GENIEIVFAKPPDQ   85 (103)
T ss_dssp             TEEET------TEEEEEEECCCCCC
T ss_pred             CCccC------CCEEEEEEcCCCcc
Confidence            99885      56899999987654

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.22  E-value=4e-11  Score=99.55  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=78.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....++|.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+|
T Consensus       111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-------------~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~  177 (198)
T 2yh0_A          111 PDSAHKLFIGGLPNYLNDDQVKELLTS-------------FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN  177 (198)
T ss_dssp             SCCCCEEEEECCCTTCCHHHHHHHHHT-------------BSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence            356789999999999999999999997             7889999999999899999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      ++.+.|.||+..++
T Consensus       178 g~~~~------g~~l~v~~a~~~~~  196 (198)
T 2yh0_A          178 GMQLG------DKKLLVQRASVGAK  196 (198)
T ss_dssp             TCEET------TEECEEEESCCCCC
T ss_pred             CCEEC------CEEEEEEECCCCCC
Confidence            99885      56899999987653

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.22  E-value=3.3e-11  Score=93.79  Aligned_cols=80  Identities=18%  Similarity=0.312  Sum_probs=70.5

Q ss_pred             CCCccEEEEcCCCCcc------CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHH
Q 037791          113 LGENTTLMIRNIPNNL------KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALR  186 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~------Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~  186 (295)
                      .+..+||.|.|||...      |+++|+++|..             +|.+..+.|+  ..++.++|||||.|.+.++|.+
T Consensus        12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-------------~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~   76 (105)
T 2nlw_A           12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-------------FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVD   76 (105)
T ss_dssp             CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-------------GSCEEEEECC--CBTTBSCCEEEEEECSSSHHHH
T ss_pred             CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-------------CCCEEEEEee--CCCCCeeeEEEEEECCHHHHHH
Confidence            3446899999999999      78999999987             6888888888  3678899999999999999999


Q ss_pred             HHHHhcCCcccccCCCCCc-eEEEEecc
Q 037791          187 FWKACNKYKWEVEAPGNKK-MCEIACAD  213 (295)
Q Consensus       187 F~~~fnG~~w~~~~~gS~K-iceVsyAr  213 (295)
                      +++.+||+.|.      ++ .+.|.||.
T Consensus        77 Ai~~l~g~~~~------g~~~l~V~~a~   98 (105)
T 2nlw_A           77 AVKNADGYKLD------KQHTFRVNLFT   98 (105)
T ss_dssp             HHHHCSSEECS------TTCEEEEECSC
T ss_pred             HHHHhCCcccC------CCceEEEEEcc
Confidence            99999999985      44 78999986

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.22  E-value=5.3e-11  Score=92.84  Aligned_cols=81  Identities=11%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|.|||..+|+++|+++|.+             +|.+..+.|+.|       |||||.|.+.++|.++++.+||
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g   72 (108)
T 1x4c_A           13 RSENRVVVSGLPPSGSWQDLKDHMRE-------------AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN   72 (108)
T ss_dssp             SCCCEEEEESCCSSCCHHHHHHHHGG-------------GSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCc
Confidence            34679999999999999999999997             678888999887       9999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.+.... +..+.+.|.||+..
T Consensus        73 ~~~~g~~-~~~~~i~V~~a~~~   93 (108)
T 1x4c_A           73 TKFRSHE-GETAYIRVKVDGPR   93 (108)
T ss_dssp             EEEECTT-SCEEEEEEEESSCC
T ss_pred             CCccCCc-CcceEEEEEeCCCC
Confidence            9987311 13378999999863

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.22  E-value=1.3e-11  Score=96.41  Aligned_cols=94  Identities=11%  Similarity=0.134  Sum_probs=76.3

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ..+..++|.|+|||...|+++|+++|..++          ..|.+..+.|+.|.. +.+.|||||.|.+.++|.++++ +
T Consensus         7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g----------~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~   74 (107)
T 2lmi_A            7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCR----------IRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-K   74 (107)
T ss_dssp             CCSSCCEEEEECCCSSCCSHHHHHHTTTSC----------BTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-T
T ss_pred             CCCCccEEEEeCCCCCCCHHHHHHHHHhcC----------CcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-h
Confidence            356678999999999999999999999732          123378899999987 8899999999999999999999 9


Q ss_pred             cCCcccccCCCCCceEEEEeccCcChHHHHHH
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQGRDALEKH  223 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQGk~aLv~h  223 (295)
                      ||..+.      .+.+.|.+|..+......++
T Consensus        75 ~~~~~~------gr~i~V~~a~~~~~~~~~~~  100 (107)
T 2lmi_A           75 HRMYMG------QRYVEVYEINNEDVDALMKS  100 (107)
T ss_dssp             TTCCSS------SSCCCCEECCHHHHHHHHHT
T ss_pred             CcceeC------CeEEEEEECCHHHHHHHHHh
Confidence            998764      44688999876554444443

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=9.4e-11  Score=88.43  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.++.        |||||.|.+.++|.++++.+|
T Consensus         7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~   65 (92)
T 2dgt_A            7 GKASTKLHVGNISPTCTNQELRAKFEE-------------YGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLD   65 (92)
T ss_dssp             CCSSEEEEEESCCSSCCHHHHHHHHHT-------------TSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhC
Confidence            455789999999999999999999998             67888888773        499999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.+.|.||+.+.
T Consensus        66 g~~~~------g~~l~V~~a~~~~   83 (92)
T 2dgt_A           66 NTEFQ------GKRMHVQLSTSRL   83 (92)
T ss_dssp             TEEET------TEEEEEEESSCCC
T ss_pred             CCeeC------CcEEEEEEccCCC
Confidence            99985      5689999998654

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.21  E-value=5.9e-11  Score=96.15  Aligned_cols=82  Identities=23%  Similarity=0.168  Sum_probs=72.6

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|+|||..+|+++|+++|..             +|.+..+.++.|. ++.+.|||||.|.+.++|.++++.+||
T Consensus        93 ~~~~~l~v~nl~~~~t~~~l~~~F~~-------------~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g  158 (175)
T 3nmr_A           93 VEDRKLFIGMISKKCTENDIRVMFSS-------------FGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQ  158 (175)
T ss_dssp             GGGSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEcCCCCcCCHHHHHHHHHh-------------CCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence            35679999999999999999999987             6889999999985 588899999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEec
Q 037791          194 YKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyA  212 (295)
                      ..+..   |+.+.+.|.||
T Consensus       159 ~~~~~---g~~~~l~V~~a  174 (175)
T 3nmr_A          159 AQTME---GCSSPMVVKFA  174 (175)
T ss_dssp             SCCCT---TCSSCCEEEEC
T ss_pred             CcccC---CCCCCeEEEec
Confidence            87652   34578899998

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.21  E-value=3.5e-11  Score=95.09  Aligned_cols=75  Identities=16%  Similarity=0.192  Sum_probs=66.8

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|+|||..+|+++|+++|..             +|.+..+.|+.      +.|||||.|.+.++|.++++.+||+
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~-------------~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~   69 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSR-------------FGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS   69 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence            3689999999999999999999997             68888888873      5699999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccC
Q 037791          195 KWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAri  214 (295)
                      .+.      .+.+.|.||+.
T Consensus        70 ~~~------g~~l~V~~a~~   83 (111)
T 1whx_A           70 KFH------HVPLYLEWAPI   83 (111)
T ss_dssp             BSS------SSBCEEEEEET
T ss_pred             EEC------CeEEEEEECCC
Confidence            985      45789999974

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.21  E-value=3.5e-11  Score=93.48  Aligned_cols=83  Identities=18%  Similarity=0.259  Sum_probs=71.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE-EEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF-LYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF-lYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .+..++|.|+|||...|+++|+++|..             +|.+.. +.|+.| .++.+.|||||.|.++++|.++++. 
T Consensus        12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-   76 (104)
T 1wg5_A           12 TANDGFVRLRGLPFGCSKEEIVQFFSG-------------LEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-   76 (104)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHTTT-------------CCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-
Confidence            455789999999999999999999987             566665 889999 8899999999999999999999998 


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ||..+.      .+.++|.+|..+.
T Consensus        77 ~~~~~~------gr~i~v~~~~~~~   95 (104)
T 1wg5_A           77 HKERIG------HRYIEIFKSSRAE   95 (104)
T ss_dssp             TTCCSS------SSCCEEEEECTTT
T ss_pred             CcchhC------CcEEEEEECCHHH
Confidence            888775      3468888887554

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.8e-11  Score=88.73  Aligned_cols=76  Identities=17%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh-
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC-  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f-  191 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.++.      +.|||||.|.+.++|.++++.+ 
T Consensus         9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~-------------~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~   69 (85)
T 2ytc_A            9 DKTITTLYVGGLGDTITETDLRNHFYQ-------------FGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSF   69 (85)
T ss_dssp             CSSCCCEEEECCTTTSCHHHHHHHHHT-------------TSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTT
T ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHHh-------------CCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhc
Confidence            344679999999999999999999997             67788887775      3699999999999999999998 


Q ss_pred             cCCcccccCCCCCceEEEEecc
Q 037791          192 NKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAr  213 (295)
                      ||..+.      ++.+.|.||+
T Consensus        70 ~~~~~~------g~~l~v~~ak   85 (85)
T 2ytc_A           70 NKLIVN------GRRLNVKWGR   85 (85)
T ss_dssp             TTCEET------TEECCEEECC
T ss_pred             CCeeEC------CCEEEEEecC
Confidence            998885      4578999986

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.21  E-value=1e-11  Score=95.66  Aligned_cols=83  Identities=13%  Similarity=0.217  Sum_probs=70.9

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccc-cCCcceeeEEEecCCHHHHHHHHHH
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDF-RRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf-~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      .....+||.|+|||..+|+++|+++|..             +| +..+.++.|. .++.+.|||||.|.+.++|.+++ .
T Consensus        15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~   79 (100)
T 2j76_E           15 PKSPPYTAFLGNLPYDVTEESIKEFFRG-------------LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S   79 (100)
T ss_dssp             -----CEEEESCCSSCCSSSHHHHHSCS-------------SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-H
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHh-------------cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-h
Confidence            3566789999999999999999999987             67 8899999998 58999999999999999999999 9


Q ss_pred             hcCCcccccCCCCCceEEEEeccCc
Q 037791          191 CNKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +||..+.      ++.+.|.||+..
T Consensus        80 l~g~~~~------g~~l~V~~a~~~   98 (100)
T 2j76_E           80 LNEESLG------NRRIRVDVADQA   98 (100)
T ss_dssp             TTTCCBT------TBCCCCEECCCS
T ss_pred             cCCCEEC------CeEEEEEeccCC
Confidence            9999885      456889998754

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=98.84  E-value=1.3e-12  Score=102.78  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=74.6

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccE--------EEecccccCCcceeeEEEecCCHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDF--------LYLPMDFRRRANLGYAFVNFTTAAGA  184 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDF--------lYLPiDf~t~~N~GYAFVNF~spedA  184 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..        +.++.|..++.+.|||||.|.+.++|
T Consensus         4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A   70 (116)
T 2lcw_A            4 NSDNNTIFVQGLGENVTIESVADYFKQ-------------IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA   70 (116)
Confidence            345679999999999999999999998             455555        88999999999999999999999999


Q ss_pred             HHHHHHhcCCcccccCCCCCceEEEEeccCcC
Q 037791          185 LRFWKACNKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .++++.+||..|.      .+.+.|.||+.+.
T Consensus        71 ~~Ai~~l~g~~~~------g~~l~V~~a~~~~   96 (116)
T 2lcw_A           71 KAAIDWFDGKEFS------GNPIKVSFATRRA   96 (116)
Confidence            9999999999886      4578999998654

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.20  E-value=4.3e-11  Score=100.65  Aligned_cols=84  Identities=12%  Similarity=0.131  Sum_probs=72.9

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||+|+|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+||
T Consensus        26 ~~~~~l~V~nLp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~   92 (216)
T 2qfj_A           26 AIMSRVYVGSIYYELGEDTIRQAFAP-------------FGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS   92 (216)
T ss_dssp             HHHTEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS
T ss_pred             CcCCEEEEECCCCCCCHHHHHHHHHh-------------CCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC
Confidence            44679999999999999999999987             68899999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..|.      .+.+.|.++..+.
T Consensus        93 ~~~~------g~~l~v~~~~~~~  109 (216)
T 2qfj_A           93 VMLG------GRNIKVGRPSNIG  109 (216)
T ss_dssp             CCCC-------CCCEEECCSCCG
T ss_pred             CeeC------CeeEEEecCCCcc
Confidence            9885      3467888876554

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.20  E-value=1.7e-11  Score=99.63  Aligned_cols=84  Identities=19%  Similarity=0.273  Sum_probs=69.5

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE--Eeccc---ccCCcceeeEEEecCCHHHHHHHH
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL--YLPMD---FRRRANLGYAFVNFTTAAGALRFW  188 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl--YLPiD---f~t~~N~GYAFVNF~spedA~~F~  188 (295)
                      ...+||.|+|||..+|+++|+++|..+             |.+..+  .+++|   ..++.+.|||||.|.+.++|.+++
T Consensus        43 ~~~~~l~V~nLp~~~te~~L~~~F~~~-------------G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai  109 (143)
T 3egn_A           43 EPNCRIYVKNLAKHVQEKDLKYIFGRY-------------VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKAL  109 (143)
T ss_dssp             SCCSEEEEEEECTTCCHHHHHHHHGGG-------------CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHh-------------CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHH
Confidence            446899999999999999999999984             444443  23334   357888999999999999999999


Q ss_pred             HHhcCCcccccCCCCCceEEEEeccCcC
Q 037791          189 KACNKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       189 ~~fnG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +.+||..+.      ++.+.|.||+.+.
T Consensus       110 ~~lng~~~~------g~~l~V~~a~~~~  131 (143)
T 3egn_A          110 KEANGYVLF------GKPMVVQFARSAR  131 (143)
T ss_dssp             HHHTTBEET------TEECEEEECCCSC
T ss_pred             HHhCCCEeC------CcEEEEEECCCCC
Confidence            999999985      5689999998654

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.19  E-value=5.3e-11  Score=89.50  Aligned_cols=76  Identities=14%  Similarity=0.323  Sum_probs=64.9

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|+|||..+|+++|+++|.+             + .+..+.++      .+.|||||.|.+.++|.++++.+||.
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~-------------~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~   63 (88)
T 1wg1_A            4 GSSGILVKNLPQDSNCQEVHDLLKD-------------Y-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQY   63 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCS-------------S-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhh-------------C-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCC
Confidence            4789999999999999999999987             3 45555553      57899999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      ++.+.|.||....
T Consensus        64 ~~~------g~~l~V~~a~~~~   79 (88)
T 1wg1_A           64 SFR------GKDLIVQLQPTDA   79 (88)
T ss_dssp             EET------TEEEEEEECCCCC
T ss_pred             eEC------CcEEEEEEcCCCc
Confidence            985      5689999997543

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.18  E-value=3.7e-11  Score=96.83  Aligned_cols=81  Identities=11%  Similarity=0.089  Sum_probs=70.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||.++|+++|+++|.+             +|.+..+.|..|      +|||||.|.+.++|.++++.++
T Consensus        13 ~~~~~~LfV~nLp~~vte~dL~~lF~~-------------fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~   73 (105)
T 1sjq_A           13 GVPSRVIHIRKLPIDVTEGEVISLGLP-------------FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT   73 (105)
T ss_dssp             CCCCCEEEECSCCTTSCHHHHHHHHHH-------------HCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhc
Confidence            455789999999999999999999998             688888998876      6999999999999999999997


Q ss_pred             CC--cccccCCCCCceEEEEeccCcChH
Q 037791          193 KY--KWEVEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       193 G~--~w~~~~~gS~KiceVsyAriQGk~  218 (295)
                      |.  .+.      ++.+.|.||+.|...
T Consensus        74 ~~~~~l~------Gr~l~V~~A~~~~~~   95 (105)
T 1sjq_A           74 SVTPVLR------GQPIYIQFSNHKELK   95 (105)
T ss_dssp             TSCCEET------TEECCBCCCSSSSCC
T ss_pred             cCCceEC------CEEEEEEEcCCCCCC
Confidence            64  442      568999999987653

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.18  E-value=4.5e-11  Score=94.16  Aligned_cols=77  Identities=21%  Similarity=0.297  Sum_probs=69.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||.|.|||...|+++|+++|..             +|.+..+.|+.|.. +.++|||||.|.+.++|..+++ +||+.
T Consensus        11 ~~~lfV~~Lp~~~te~~L~~~F~~-------------~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~   75 (103)
T 1s79_A           11 NRSVYIKGFPTDATLDDIKEWLED-------------KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQK   75 (103)
T ss_dssp             GGCEEEECCCTTCCHHHHHHHHHT-------------SSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhh-------------cCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCE
Confidence            468999999999999999999997             78999999999987 8899999999999999999999 89988


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      +.      ++.+.|.|+.
T Consensus        76 ~~------gr~l~V~~~~   87 (103)
T 1s79_A           76 YK------ETDLLILFKD   87 (103)
T ss_dssp             CT------TTTCEEEEHH
T ss_pred             EC------CEEEEEEEch
Confidence            75      4467888874

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.18  E-value=1.1e-10  Score=89.93  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=67.6

Q ss_pred             CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ....+||.|.|||. .+|+++|+++|..             +|.+..+.++        .|||||.|.+.++|.++++.+
T Consensus        19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-------------~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l   77 (97)
T 2xnq_A           19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-------------YGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXE   77 (97)
T ss_dssp             CCTTCEEEEESCCSSCCCHHHHHHHHGG-------------GSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHh-------------cCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHc
Confidence            45578999999998 9999999999998             6777777773        699999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ||..+.      ++.+.|.||+.++
T Consensus        78 ~g~~~~------g~~l~V~~a~~~~   96 (97)
T 2xnq_A           78 SQEMNF------GKKLILEVSSSNA   96 (97)
T ss_dssp             TTSEET------TEECEEEECCCCC
T ss_pred             CCCEEC------CEEEEEEecCCCC
Confidence            999885      4578999998765

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.18  E-value=1e-10  Score=100.71  Aligned_cols=83  Identities=20%  Similarity=0.226  Sum_probs=74.2

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..|||.|+|||..+|+++|+++|.+             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.+||.
T Consensus        14 p~~tlfVgnLp~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~   80 (213)
T 4f02_A           14 PMASLYVGDLHPDVTEAMLYEKFSP-------------AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD   80 (213)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHh-------------hCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh
Confidence            4579999999999999999999987             688999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      .+.+.|.++..+.
T Consensus        81 ~~~------g~~i~~~~~~~~~   96 (213)
T 4f02_A           81 VIK------GKPVRIMWSQRDP   96 (213)
T ss_dssp             EET------TEECEEEECCCCT
T ss_pred             hcC------Ccccccccccccc
Confidence            875      4567788876544

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.17  E-value=8.5e-11  Score=96.23  Aligned_cols=81  Identities=12%  Similarity=0.152  Sum_probs=71.8

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .....+||.|.|||..+|+++|+++|..             +|.+..+.++.|     +.|||||.|.+.++|..+++.+
T Consensus        69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~-------------~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l  130 (150)
T 2i2y_A           69 SCPLDCKVYVGNLGNNGNKTELERAFGY-------------YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL  130 (150)
T ss_dssp             SSTTSCEEEEESCCSCCSCHHHHHHHHH-------------HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHh-------------hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHc
Confidence            3456789999999999999999999998             678888999887     5799999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ||..+.      ++.+.|.||+.+.
T Consensus       131 ~g~~~~------g~~l~v~~a~~~~  149 (150)
T 2i2y_A          131 DGRTLC------GCRVRVELSNGEK  149 (150)
T ss_dssp             SSSCSS------SSCCEEEECCCCC
T ss_pred             CCCEEC------CeEEEEEEcCCCC
Confidence            999874      4578999998764

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.17  E-value=8.9e-11  Score=94.48  Aligned_cols=80  Identities=14%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      .....++|.|+|||...|+++|+++|.+             +| .+.++.+..+    .+.|||||.|.+.++|.++++.
T Consensus        24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~-------------~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~   86 (111)
T 2jvr_A           24 LPAKRYRITMKNLPEGCSWQDLKDLARE-------------NSLETTFSSVNTR----DFDGTGALEFPSEEILVEALER   86 (111)
T ss_dssp             -CCCCEEEEEECSSCCCCHHHHHHHHHH-------------HTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHH-------------hCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHH
Confidence            3455789999999999999999999998             56 7888877543    3689999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEeccC
Q 037791          191 CNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      +||..+.      .+.+.|.+|+-
T Consensus        87 lng~~l~------Gr~i~V~~a~~  104 (111)
T 2jvr_A           87 LNNIEFR------GSVITVERDDN  104 (111)
T ss_dssp             TTTEEET------TEEEEEEESCC
T ss_pred             cCCCEEC------CeEEEEEECCC
Confidence            9999885      55889999874

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.17  E-value=7.8e-11  Score=95.26  Aligned_cols=81  Identities=14%  Similarity=0.229  Sum_probs=72.9

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      +..++|.|+|||..+|+++|.++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++ ++|
T Consensus        85 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~  150 (167)
T 2cjk_A           85 DKTGKIFVGGIGPDVRPKEFEEFFSQ-------------WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF  150 (167)
T ss_dssp             HHCEEEEEEEECTTCCHHHHHHHHHT-------------TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred             cCCCeEEECCCCCCCCHHHHHHHHHh-------------CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence            34679999999999999999999997             7889999999999999999999999999999999998 788


Q ss_pred             CcccccCCCCCceEEEEeccC
Q 037791          194 YKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAri  214 (295)
                      ..+.      ++.+.|.||..
T Consensus       151 ~~~~------g~~i~V~~a~p  165 (167)
T 2cjk_A          151 IDFK------DRKIEIKRAEP  165 (167)
T ss_dssp             ECSS------SSCEEEEECCC
T ss_pred             EEeC------CeEEEEeecCC
Confidence            7774      45789999975

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=5.7e-11  Score=97.20  Aligned_cols=98  Identities=14%  Similarity=0.179  Sum_probs=78.7

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      +..++|+|+|||...|+++|+++|..+|.         +.|.++-++|+.| .++.+.|||||.|.+.++|.++++. ||
T Consensus        21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~---------v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~   89 (123)
T 2dha_A           21 ENQVIVRMRGLPFTATAEEVVAFFGQHCP---------ITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HK   89 (123)
T ss_dssp             CSCCEEEECSCCTTCCHHHHHHHHHTTSC---------CTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhCC---------ccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CC
Confidence            45689999999999999999999998542         1245789999999 5889999999999999999999997 88


Q ss_pred             CcccccCCCCCceEEEEeccCcChHHHHHHhcccc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQGRDALEKHFERFK  228 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~  228 (295)
                      +.+.      .+.++|..|..+......++.+++.
T Consensus        90 ~~l~------gR~i~V~~a~~~e~~~~~~~~~~~p  118 (123)
T 2dha_A           90 DLLG------KRYIELFRSTAAEVQQVLNRFSSAS  118 (123)
T ss_dssp             EESS------SCEECCEEECHHHHHHHHHHHTTCS
T ss_pred             CeeC------CeEEEEEECCHHHHHHHHHhccCCC
Confidence            7664      4578899887665555555544443

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.16  E-value=1.1e-10  Score=96.62  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=72.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|+|||..+|+++|+++|..             +|.+..+.|..|..++.+.|||||.|.+.++|.++++. +
T Consensus        10 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~   75 (196)
T 1l3k_A           10 PEQLRKLFIGGLSFETTDESLRSHFEQ-------------WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-R   75 (196)
T ss_dssp             CGGGGEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-C
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-C
Confidence            455789999999999999999999997             68899999999999999999999999999999999987 7


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..+.      .+.+.|.+|..+
T Consensus        76 ~~~~~------g~~l~v~~~~~~   92 (196)
T 1l3k_A           76 PHKVD------GRVVEPKRAVSR   92 (196)
T ss_dssp             SCEET------TEECEEEECCC-
T ss_pred             CCEEC------CEEeeeecccCc
Confidence            77764      457788887644

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.16  E-value=8.7e-11  Score=97.34  Aligned_cols=83  Identities=13%  Similarity=0.185  Sum_probs=71.9

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|+|||..+|+++|+++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++. +|
T Consensus       102 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~  167 (196)
T 1l3k_A          102 LTVKKIFVGGIKEDTEEHHLRDYFEQ-------------YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY  167 (196)
T ss_dssp             -CCSEEEEECCTTTCCHHHHHHHHTT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred             CCcceEEEeCCCCCCCHHHHHHHHhc-------------CCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence            34579999999999999999999987             78899999999999999999999999999999999987 78


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +.+.      ++.+.|.||..+.
T Consensus       168 ~~~~------G~~i~v~~a~~k~  184 (196)
T 1l3k_A          168 HTVN------GHNCEVRKALSKQ  184 (196)
T ss_dssp             CEET------TEECEEEECC---
T ss_pred             cEEC------CEEEEEEecCChh
Confidence            7764      5679999997654

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.16  E-value=7.9e-11  Score=93.06  Aligned_cols=82  Identities=11%  Similarity=0.137  Sum_probs=67.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....++|.|+|||..+|+++|+++|..             +|.+..+.+..|      +|||||.|.+.++|..+++.++
T Consensus        12 ~~p~~~l~V~nLp~~~te~~L~~~F~~-------------fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~   72 (101)
T 2cq1_A           12 GAPSRVLHIRKLPGEVTETEVIALGLP-------------FGKVTNILMLKG------KNQAFLELATEEAAITMVNYYS   72 (101)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHTTTT-------------TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence            344679999999999999999999987             678888877765      6999999999999999999987


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      +.....    .++.+.|.||+.|..
T Consensus        73 ~~~~~~----~Gr~l~V~~a~~~~~   93 (101)
T 2cq1_A           73 AVTPHL----RNQPIYIQYSNHKEL   93 (101)
T ss_dssp             HSCCEE----TTEECEEEECSCSSC
T ss_pred             cCCceE----CCcEEEEEEcCcccC
Confidence            543221    367899999997754

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.15  E-value=3e-10  Score=88.47  Aligned_cols=75  Identities=20%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             CccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          115 ENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       115 ~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..+||.|.|||.. +|+++|+++|..             +|.+..+.+        +.|||||.|.+.++|.++++.+||
T Consensus        26 ~~~~l~V~nl~~~~~t~~~l~~~F~~-------------~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g   84 (110)
T 1wf1_A           26 INSRVFIGNLNTALVKKSDVETIFSK-------------YGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENG   84 (110)
T ss_dssp             CSSEEEECSCCCSSCCHHHHHHHHGG-------------GSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTT
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHh-------------CCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCC
Confidence            4579999999999 999999999998             677777777        579999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..+.      .+.+.|.||+.+.
T Consensus        85 ~~~~------g~~l~V~~a~~~~  101 (110)
T 1wf1_A           85 RVLA------GQTLDINMAGEPK  101 (110)
T ss_dssp             CEET------TEECCEEESCCCC
T ss_pred             CEEC------CeEEEEEECCCCC
Confidence            9985      5578999997543

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=99.15  E-value=3.1e-11  Score=97.19  Aligned_cols=86  Identities=21%  Similarity=0.336  Sum_probs=72.0

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEE-ecccccCCcce-eeEEEecCCHHHHHHHHHHhcCC
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLY-LPMDFRRRANL-GYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlY-LPiDf~t~~N~-GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      -.|.||+||+.+|+++|++.|+..             -+.||+| .+-|...+.+. +.|||||++.+++..|.+.|+|+
T Consensus        10 ~KvVIRrLPP~Ltee~F~~~l~~~-------------~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~   76 (97)
T 2l08_A           10 HMVVIRRLPPGLTKEQLEEQLRPL-------------PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY   76 (97)
T ss_dssp             CCEEEECCCSCSCHHHHTTTTSCC-------------SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred             eeEEEeCCCCCCCHHHHHHHhCCc-------------CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence            479999999999999999999862             2357765 55565554443 99999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .|.+.+ |+.-.+.|+||..|.
T Consensus        77 ~F~D~k-g~~~~a~VE~APyqK   97 (97)
T 2l08_A           77 IFLDSK-GLEYPAVVEFAPFQK   97 (97)
T ss_dssp             EEECTT-CCEEEEEEEECCCCC
T ss_pred             EEEeCC-CCEeeeEEEecCCCC
Confidence            999887 567789999999984

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.15  E-value=4.2e-11  Score=91.75  Aligned_cols=80  Identities=13%  Similarity=0.166  Sum_probs=69.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.++.|. ++.+.|||||.|.+.++|.++++  +
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~   69 (102)
T 2xs2_A            6 KIMPNTVFVGGIDVRMDETEIRSFFAR-------------YGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--S   69 (102)
T ss_dssp             EEEEEEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--C
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--C
Confidence            344689999999999999999999987             6889999999998 89999999999999999999999  7


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      |+.+.      ++.+.|.+|..
T Consensus        70 ~~~~~------g~~l~v~~a~~   85 (102)
T 2xs2_A           70 QINFH------GKKLKLGPAIR   85 (102)
T ss_dssp             CCEET------TEECEEEEEEE
T ss_pred             CCeEC------CEEEEEEECCc
Confidence            77764      45677888763

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.7e-10  Score=86.61  Aligned_cols=77  Identities=14%  Similarity=0.158  Sum_probs=67.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|..             +|.+..+.+..        |||||.|.+.++|.++++.+|
T Consensus         6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~   64 (90)
T 2dnp_A            6 SGNTWKIFVGNVSAACTSQELRSLFER-------------RGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLN   64 (90)
T ss_dssp             SCCSCCEEEESCCTTCCHHHHHHHHHH-------------HSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHc-------------CCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhC
Confidence            445789999999999999999999998             57777777763        499999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+.      .+.+.|.||+.+.
T Consensus        65 g~~~~------g~~l~v~~a~~~~   82 (90)
T 2dnp_A           65 GKEVK------GKRINVELSTKGQ   82 (90)
T ss_dssp             TCEET------TEECEEEESCCCC
T ss_pred             CCEEC------CcEEEEEECCCCC
Confidence            99885      5689999998764

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.14  E-value=2.1e-10  Score=94.12  Aligned_cols=82  Identities=11%  Similarity=0.057  Sum_probs=68.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....++|.|+|||.++|+++|+++|..             +|.+..+.|+.|      +|||||.|.+.++|.++++.++
T Consensus        28 ~~ps~~LfVgNLp~~vte~dL~~lF~~-------------fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~   88 (119)
T 2ad9_A           28 GVPSRVIHIRKLPIDVTEGEVISLGLP-------------FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT   88 (119)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHHHTT-------------TSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhc
Confidence            344679999999999999999999997             788888888876      6999999999999999999998


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |.... +   ..+.+.|.||+.|..
T Consensus        89 ~~~~~-l---~Gr~l~V~~a~~k~~  109 (119)
T 2ad9_A           89 SVTPV-L---RGQPIYIQFSNHKEL  109 (119)
T ss_dssp             HHCCC-B---TTBCCEEEECSSSSC
T ss_pred             cCCce-E---CCeEEEEEEccCCCC
Confidence            64221 1   256889999987754

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.13  E-value=1.4e-10  Score=88.58  Aligned_cols=78  Identities=15%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .+..+||.|.|||. .+|+++|+++|..             +|.+..+.++        .|||||.|.+.++|..+++.+
T Consensus         7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~-------------~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l   65 (96)
T 2kvi_A            7 IPPKSRLFIGNLPLKNVSKEDLFRIFSP-------------YGHIMQINIK--------NAFGFIQFDNPQSVRDAIECE   65 (96)
T ss_dssp             --CCEEEEEESSTTSCCCHHHHHHHHTT-------------TCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHh-------------cCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHc
Confidence            45578999999998 9999999999997             6778878774        699999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcCh
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      ||..+.      .+.+.|.||+.+..
T Consensus        66 ~g~~~~------g~~l~V~~a~~~~~   85 (96)
T 2kvi_A           66 SQEMNF------GKKLILEVSSSNAR   85 (96)
T ss_dssp             TCSSCB------TTTBCEEEEECCCC
T ss_pred             CCCeeC------CcEEEEEEcCcCCC
Confidence            999886      34678999976654

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.13  E-value=1.9e-10  Score=91.17  Aligned_cols=80  Identities=10%  Similarity=0.073  Sum_probs=67.3

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ...||.|+|||..+|+++|+++|..             +|.+..+.|..+      +|||||.|.+.++|.++++.++|.
T Consensus        14 p~~~l~V~nLp~~~te~~L~~~F~~-------------fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~   74 (104)
T 1wex_A           14 VSPVVHVRGLCESVVEADLVEALEK-------------FGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADV   74 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTT-------------TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC
Confidence            3569999999999999999999997             678888887654      699999999999999999999887


Q ss_pred             cccccCCCCCceEEEEeccCcCh
Q 037791          195 KWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      ....    ..+.+.|.||+.|..
T Consensus        75 ~~~i----~Gr~l~V~~a~~~~~   93 (104)
T 1wex_A           75 PVYI----AGQQAFFNYSTSKRI   93 (104)
T ss_dssp             CCBS----SSSBCEEEECSSSSC
T ss_pred             CceE----CCEEEEEEEccCccc
Confidence            5321    256889999987653

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.12  E-value=1.4e-10  Score=90.72  Aligned_cols=82  Identities=15%  Similarity=0.193  Sum_probs=68.8

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....++|.|+|||...|+++|+++|..             +|.. .+.|+.|. ++.++|||||.|.+.++|.++++ +|
T Consensus        12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~   75 (102)
T 1wez_A           12 STTGHCVHMRGLPYRATENDIYNFFSP-------------LNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KD   75 (102)
T ss_dssp             CSSSCEEEEESCCTTCCHHHHHHSSCS-------------CCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hC
Confidence            344679999999999999999999987             4533 78999997 89999999999999999999995 68


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.++|.+|...+
T Consensus        76 ~~~~~------gr~i~V~~~~~~~   93 (102)
T 1wez_A           76 KANMQ------HRYVELFLNSTAG   93 (102)
T ss_dssp             SCCSS------SSCCEEEEECCCC
T ss_pred             CCeEC------CcEEEEEECCCCC
Confidence            88775      4467888877543

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.12  E-value=2.5e-10  Score=93.75  Aligned_cols=81  Identities=19%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             CccEEEEcCCCCccCHHHHHH----HHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          115 ENTTLMIRNIPNNLKRRDLLH----ILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~----ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ..+||.|+|||.+++.++|++    +|..             +|.+.-+.++   .++.++|||||.|.+.++|..+++.
T Consensus        28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-------------~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~   91 (127)
T 2a3j_A           28 PSQVVLITNINPEVPKEKLQALLYALASS-------------QGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEA   91 (127)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHH-------------HSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhcc-------------CCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHH
Confidence            367999999999999999874    5655             6777667664   3567899999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEeccCcCh
Q 037791          191 CNKYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      +||+.+.      ++.+.|.||+.+..
T Consensus        92 lng~~l~------gr~l~V~~a~~~~~  112 (127)
T 2a3j_A           92 FQGYPFQ------GNPLVITFSETPQS  112 (127)
T ss_dssp             STTCCCT------TSCCEEEECCCCCH
T ss_pred             HCCCEeC------CCEEEEEEccCcch
Confidence            9999885      45789999997764

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=86.31  Aligned_cols=66  Identities=18%  Similarity=0.354  Sum_probs=60.2

Q ss_pred             cEEEEcCCCCcc------CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          117 TTLMIRNIPNNL------KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       117 TTVMIRNIPNk~------Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      +||.|.|||...      |+++|+++|..             +|.+..+.++  ..++.++|||||.|.+.++|.++++.
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-------------~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~   66 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-------------FGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKN   66 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHT-------------TCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-------------cCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHH
Confidence            699999999999      78999999987             6888888887  36788999999999999999999999


Q ss_pred             hcCCccc
Q 037791          191 CNKYKWE  197 (295)
Q Consensus       191 fnG~~w~  197 (295)
                      +||..+.
T Consensus        67 lng~~~~   73 (81)
T 2krb_A           67 ADGYKLD   73 (81)
T ss_dssp             SSSCCCS
T ss_pred             hcCcccC
Confidence            9999986

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.10  E-value=2.7e-10  Score=86.88  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...-+||.|.|||..+|+++|+++|.+             +|.+..+.|+.|     ++|||||.|.++++|.    .++
T Consensus         8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~-------------~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~   65 (89)
T 3d2w_A            8 HHHGSKVFVGRCTEDMTAEELQQFFCQ-------------YGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLC   65 (89)
T ss_dssp             ---CCEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhc-------------cCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHc
Confidence            445789999999999999999999997             788999999986     6799999999999997    478


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..+..    ..+.+.|.+|+.+.
T Consensus        66 ~~~~~~----~g~~v~v~~a~~k~   85 (89)
T 3d2w_A           66 GEDLII----KGISVHISNAEPKH   85 (89)
T ss_dssp             TCEEEE----TTEEEEEEECC---
T ss_pred             CCCccc----CCEEEEEEEcCCCC
Confidence            876542    46789999998654

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.10  E-value=2.6e-10  Score=91.35  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      ||+|+|||..+|+++|+++|..             +|.+..+.+..|.. +.+.|||||.|.+.++|.++++.+||..+.
T Consensus         2 ~l~V~nlp~~~t~~~l~~~f~~-------------~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~   67 (166)
T 3md3_A            2 VLYVGNLDKAITEDILKQYFQV-------------GGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIE   67 (166)
T ss_dssp             EEEEEEEETTCCHHHHHHHHGG-------------GSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             EEEECCCCCcCCHHHHHHHHHh-------------cCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccC
Confidence            7999999999999999999997             68889999999875 568999999999999999999999999985


Q ss_pred             ccCCCCCceEEEEeccCc
Q 037791          198 VEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       198 ~~~~gS~KiceVsyAriQ  215 (295)
                            ++.+.|.||..+
T Consensus        68 ------g~~i~v~~~~~~   79 (166)
T 3md3_A           68 ------NNIVKINWAFQS   79 (166)
T ss_dssp             ------TEECEEEECCCC
T ss_pred             ------CCeeEEEEcCCC
Confidence                  457888888644

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.09  E-value=1.5e-10  Score=94.59  Aligned_cols=80  Identities=20%  Similarity=0.294  Sum_probs=67.4

Q ss_pred             CCCccEEEEcC--CCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          113 LGENTTLMIRN--IPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       113 ~d~RTTVMIRN--IPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      .+.-++|.|+|  ||..+|+++|+++|.+             +|....++++.|      +|||||.|.+.++|.++++.
T Consensus        22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~-------------fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~   82 (114)
T 2cq2_A           22 SYATQSLVVANGGLGNGVSRNQLLPVLEK-------------CGLVDALLMPPN------KPYSFARYRTTEESKRAYVT   82 (114)
T ss_dssp             SSCCSEEEEETCTGGGTCCHHHHHHHHHH-------------HSCEEEEECCTT------CSCEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHH
Confidence            34456899966  9999999999999998             678888888753      69999999999999999999


Q ss_pred             hcCCcc-cccCCCCCceEEEEecc
Q 037791          191 CNKYKW-EVEAPGNKKMCEIACAD  213 (295)
Q Consensus       191 fnG~~w-~~~~~gS~KiceVsyAr  213 (295)
                      +||+.+ ....  ..+.+-|.||+
T Consensus        83 lnG~~~~~~lg--~g~~l~v~~a~  104 (114)
T 2cq2_A           83 LNGKEVVDDLG--QKITLYLNFVE  104 (114)
T ss_dssp             TTTCEEECTTS--CEEECEEEEES
T ss_pred             hCCCEEccccC--CCcEEEEEecc
Confidence            999988 4332  36678888885

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.08  E-value=4.1e-10  Score=109.23  Aligned_cols=85  Identities=12%  Similarity=0.146  Sum_probs=77.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|.++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|..+++.||
T Consensus        99 ~~~~~~lfV~nL~~~~te~~L~~~F~~-------------~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln  165 (437)
T 3pgw_S           99 GDAFKTLFVARVNYDTTESKLRREFEV-------------YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD  165 (437)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence            355689999999999999999999997             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..|.      .+.+.|.||+.+.
T Consensus       166 g~~i~------gr~i~V~~a~~~~  183 (437)
T 3pgw_S          166 GKKID------GRRVLVDVERGRT  183 (437)
T ss_pred             CCEEC------CEEEEEEEeCCCC
Confidence            99885      5689999998654

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=4.8e-10  Score=89.68  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=68.3

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|+|||...|+++|+++|..             + .+..+.|+.|.. +.+.|||||.|.++++|.+++ .+||
T Consensus        14 ~~~~~v~V~nLp~~~te~dl~~~F~~-------------~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~   77 (109)
T 2dnn_A           14 PDDLYVSVHGMPFSAMENDVRDFFHG-------------L-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNR   77 (109)
T ss_dssp             HHHHEEEEECCCSSCCHHHHHHHTTT-------------S-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhcc-------------C-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCC
Confidence            34579999999999999999999986             4 678899999965 888999999999999999999 6899


Q ss_pred             CcccccCCCCCceEEEEeccC
Q 037791          194 YKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAri  214 (295)
                      +.+.      .+.++|..|..
T Consensus        78 ~~~~------gr~i~V~~a~~   92 (109)
T 2dnn_A           78 MLMI------QRYVEVSPATE   92 (109)
T ss_dssp             EEET------TEEEEEEECCH
T ss_pred             CeEC------CeEEEEEECCc
Confidence            8875      45788887753

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.06  E-value=3e-10  Score=90.36  Aligned_cols=79  Identities=13%  Similarity=0.083  Sum_probs=67.5

Q ss_pred             CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .+..++|.|+|||. .+|+++|+++|.+             +|.+..+.|..|      .|||||.|.+.++|..+++.+
T Consensus        12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~-------------fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l   72 (102)
T 1x4d_A           12 VETRRVVHIMDFQRGKNLRYQLLQLVEP-------------FGVISNHLILNK------INEAFIEMATTEDAQAAVDYY   72 (102)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGG-------------GSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCcCCHHHHHHHHHh-------------cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHH
Confidence            44577999999999 9999999999998             788888998765      489999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAri  214 (295)
                      ||.....    ..+.+.|.||+.
T Consensus        73 ~~~~~~~----~Gr~l~V~~a~~   91 (102)
T 1x4d_A           73 TTTPALV----FGKPVRVHLSQK   91 (102)
T ss_dssp             HHSCCEE----TTEECEEEEECC
T ss_pred             cCCCceE----CCcEEEEEECCC
Confidence            9875221    367899999984

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.06  E-value=7.1e-10  Score=88.70  Aligned_cols=79  Identities=14%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ...+|.|+|||.+.|+++|+++|.+             +|.+..+.|..      .+|||||.|.+.++|..+++.+||.
T Consensus        20 ps~~l~V~NLp~~~te~~L~~lF~~-------------fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~   80 (100)
T 3r27_A           20 ASPVVHIRGLIDGVVEADLVEALQE-------------FGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADN   80 (100)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHhc-------------cCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCC
Confidence            4568999999999999999999998             67787777753      3699999999999999999999998


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ...-    .++.+.|.||+-|-
T Consensus        81 ~~~i----~Gr~i~V~~S~~k~   98 (100)
T 3r27_A           81 QIYI----AGHPAFVNYSTSQK   98 (100)
T ss_dssp             CEEE----TTEEEEEEECSCSC
T ss_pred             Ccee----CCcEEEEEeccccc
Confidence            6421    36789999998764

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.05  E-value=4.4e-10  Score=96.70  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=71.2

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..++|.|+|||..+|+++|+++|..             +|.+..+.|+.|..  .+.|||||.|.+.++|.++++.+||+
T Consensus       102 ~~~~l~v~nl~~~~t~~~l~~~F~~-------------~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng~  166 (213)
T 4f02_A          102 GVGNIFIKNLDKSIDNKALYDTFSA-------------FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGM  166 (213)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred             ccccceECCcccccHHHHHHHHHhh-------------cCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCCC
Confidence            3568999999999999999999997             68888899988853  47999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCc
Q 037791          195 KWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQ  215 (295)
                      .+.      ++.+.|.||+.+
T Consensus       167 ~~~------g~~i~V~~a~~~  181 (213)
T 4f02_A          167 LLN------DRKVFVGRFKSR  181 (213)
T ss_dssp             EET------TEECEEEECCCH
T ss_pred             EEC------CEEEEEEEcCCC
Confidence            985      568999999864

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.05  E-value=8.6e-10  Score=84.04  Aligned_cols=78  Identities=15%  Similarity=0.051  Sum_probs=66.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|+  .+|+++|+++|.+             +|.+..+.+.      .+.|||||.|.+.++|.++++.+|
T Consensus        12 ~~~~~~l~V~n~--~~t~~~l~~~F~~-------------~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~   70 (97)
T 1x5p_A           12 PRKGNTLYVYGE--DMTPTLLRGAFSP-------------FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN   70 (97)
T ss_dssp             CCCCSEEEEECS--SCCHHHHHHHHTT-------------TSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEcCC--CCCHHHHHHHHhh-------------CCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhC
Confidence            445689999996  8999999999998             6777777773      567999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      .+.+.|.||+.+..
T Consensus        71 g~~~~------g~~l~v~~a~~~~~   89 (97)
T 1x5p_A           71 GTQVE------SVQLKVNIARKQPM   89 (97)
T ss_dssp             TEEET------TEEEEEECCSSCCC
T ss_pred             CCeEC------CeEEEEEECCCCCC
Confidence            99884      56899999987653

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=7.8e-10  Score=87.14  Aligned_cols=69  Identities=13%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC---CcceeeEEEecCCHHHHHHHHHH
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR---RANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t---~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ...+||.|.|||..+|+++|+++|.+             +|.+. +.++.|..+   +.++|||||.|.+.++|.++++.
T Consensus         6 ~~~~~lfVgnLp~~~te~~L~~~F~~-------------~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~   71 (114)
T 2dnl_A            6 SGSRKVFVGGLPPDIDEDEITASFRR-------------FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA   71 (114)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHTTT-------------TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHh-------------cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence            44678999999999999999999987             68888 899999887   68999999999999999999999


Q ss_pred             h---cCCcc
Q 037791          191 C---NKYKW  196 (295)
Q Consensus       191 f---nG~~w  196 (295)
                      +   +|+.+
T Consensus        72 ~~~~~G~~~   80 (114)
T 2dnl_A           72 CLEEDGKLY   80 (114)
T ss_dssp             SEEETTEEE
T ss_pred             hhhcCCcEE
Confidence            8   55544

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.1e-09  Score=82.83  Aligned_cols=79  Identities=19%  Similarity=0.162  Sum_probs=68.7

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE-EecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL-YLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl-YLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...+||.|.|||..+|+++|+++|..             +|.+..+ .++.|..++    +|||.|.+.++|.++++.+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-------------~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~   75 (96)
T 2e44_A           13 QRIRKLQIRNIPPHLQWEVLDSLLVQ-------------YGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLN   75 (96)
T ss_dssp             CSCCCEEEEEECSSSCHHHHHHHHHH-------------HSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHh-------------cCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhC
Confidence            34679999999999999999999997             6788888 788887654    49999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..+.      .+.+.|.||+..
T Consensus        76 g~~~~------g~~l~V~~a~~~   92 (96)
T 2e44_A           76 GFQLE------NFTLKVAYIPDE   92 (96)
T ss_dssp             TCBCS------SCBCEEEECCCC
T ss_pred             CCEEC------CcEEEEEEcCcc
Confidence            99985      457899999754

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.02  E-value=6.2e-10  Score=91.09  Aligned_cols=77  Identities=14%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...++|.|+|||..+|+++|+++|..             +|.+..+     ..++.+.|||||.|.+.++|.++++.+||
T Consensus        97 ~~~~~l~v~nlp~~~t~~~l~~~F~~-------------~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g  158 (175)
T 1fje_B           97 RAARTLLAKNLSFNITEDELKEVFED-------------ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG  158 (175)
T ss_dssp             GGGGEEEEESCCSSCCHHHHHHHCTT-------------CSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred             ccCCEEEEeCCCCCCCHHHHHHHHHh-------------cCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence            45689999999999999999999987             4555544     56778899999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccC
Q 037791          194 YKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAri  214 (295)
                      ..+.      ++.+.|.||+.
T Consensus       159 ~~~~------g~~i~v~~a~~  173 (175)
T 1fje_B          159 AEID------GRSVSLYYTGE  173 (175)
T ss_dssp             EEET------TEEEEEEECSS
T ss_pred             CEEC------CeEEEEEecCC
Confidence            9885      45799999974

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.02  E-value=4.6e-10  Score=88.98  Aligned_cols=64  Identities=13%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..++|.|.|||..+|+++|+++|..             +|.+..+.|..|       |||||.|.+.++|.++++.+||.
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~   74 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMRE-------------AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT   74 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGG-------------GSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHh-------------cCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC
Confidence            4679999999999999999999997             688889999887       99999999999999999999999


Q ss_pred             cccc
Q 037791          195 KWEV  198 (295)
Q Consensus       195 ~w~~  198 (295)
                      .+..
T Consensus        75 ~~~g   78 (115)
T 3beg_B           75 KFRS   78 (115)
T ss_dssp             BCCC
T ss_pred             EECC
Confidence            9863

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.02  E-value=1.1e-09  Score=96.78  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             CCCccEEEEcCCCCcc-CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPNNL-KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~-Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ....++|.|+|||..+ |+++|+++|..             +|.+..+.|+.|. ++.+.|||||.|.+.++|.++++.+
T Consensus       181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~-------------~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l  246 (284)
T 3smz_A          181 LLHSRCLCVDRLPPGFNDVDALCRALSA-------------VHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQA  246 (284)
T ss_dssp             TTSCSEEEEECCCTTCCCHHHHHHHTCS-------------SSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHH
T ss_pred             cCCccEEEEecCCcccCCHHHHHHHhhC-------------CCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHh
Confidence            3457899999999997 99999999987             7889999999987 6888999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcCh--HHHHHHh
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQGR--DALEKHF  224 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQGk--~aLv~hF  224 (295)
                      ||..+.      ++.+.|.||.....  ..+.++.
T Consensus       247 ~g~~~~------g~~l~v~~a~~~~~~~~~~~~~~  275 (284)
T 3smz_A          247 DGLSLG------GSHLRVSFCAPGPPGRSMLAALI  275 (284)
T ss_dssp             TTCEET------TEECEEEECCSSSCHHHHHHHHH
T ss_pred             CCCccC------CeEEEEEEecCCCcccchhhhhh
Confidence            999984      56899999986543  3444443

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.01  E-value=9.7e-10  Score=82.18  Aligned_cols=76  Identities=12%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|.|||..+|+++|+++|..             +|.+..+.++.|     +.|||||.|.+.++|.+    ++|.
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~   61 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQ-------------YGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGE   61 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTT-------------TSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHH-------------cCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcC
Confidence            3579999999999999999999987             688888888876     67999999999999964    5777


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+..    ..+.+.|.||+.+.
T Consensus        62 ~~~~----~g~~l~v~~a~~~~   79 (88)
T 1wf0_A           62 DLII----KGISVHISNAEPKH   79 (88)
T ss_dssp             EEEE----TTEEEEEECCCCCC
T ss_pred             Ccee----CCEEEEEEecCCCC
Confidence            5532    46789999998764

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.00  E-value=4.8e-10  Score=90.61  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=58.8

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      .+||.|+|||..+|+++|+++|..             +|.+..+.|+.|..++.+.|||||.|.+.++|.++++.
T Consensus         3 ~~~l~v~nLp~~~t~~~l~~~F~~-------------~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~   64 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTEDNLREYFGK-------------YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT   64 (167)
T ss_dssp             GGEEEECSCCTTCCHHHHHHHHTT-------------TCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHh-------------CCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence            579999999999999999999987             78899999999999999999999999999999999985

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.00  E-value=7.8e-10  Score=89.79  Aligned_cols=80  Identities=13%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             CCCCccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          112 MLGENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      .....++|.|+|||.. +|+++|+++|..             +|.+..+.|..      ++|||||.|.+.++|.++++.
T Consensus        21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~-------------fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~   81 (112)
T 1x4f_A           21 KQELGRVIHLSNLPHSGYSDSAVLKLAEP-------------YGKIKNYILMR------MKSQAFIEMETREDAMAMVDH   81 (112)
T ss_dssp             SSCCCCEEEEESCCCSSCCSHHHHTTTTT-------------TSCCSEEEEET------TTTEEEEECSSHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCccCCHHHHHHHHHh-------------cCCEEEEEEec------CCCEEEEEECCHHHHHHHHHH
Confidence            3455789999999997 999999999987             78888888853      469999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEeccC
Q 037791          191 CNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      +|+.....    ..+.+.|.||+-
T Consensus        82 l~~~~~~l----~Gr~l~V~~a~~  101 (112)
T 1x4f_A           82 CLKKALWF----QGRCVKVDLSEK  101 (112)
T ss_dssp             HHHSCCCS----SSSCCEEEEECS
T ss_pred             hccCCceE----CCEEEEEEECcc
Confidence            98755321    256789999964

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.00  E-value=1.3e-09  Score=96.39  Aligned_cols=81  Identities=15%  Similarity=0.233  Sum_probs=73.8

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .++|.|+|||..+|+++|.++|..             +|.+..+.++.|..++.+.|||||.|.+.++|.++++.+||..
T Consensus        95 ~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~  161 (284)
T 3smz_A           95 DALLCVANLPPSLTQQQFEELVRP-------------FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP  161 (284)
T ss_dssp             SCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHh-------------cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence            479999999999999999999997             6889999999999999999999999999999999999999988


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.      ++.+.|.||...
T Consensus       162 ~~------g~~i~v~~a~~~  175 (284)
T 3smz_A          162 LG------PRTLYVHWTDAG  175 (284)
T ss_dssp             ET------TEECEEEECCGG
T ss_pred             eC------CcEEEEEECCCC
Confidence            74      457888988643

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.00  E-value=8.1e-10  Score=98.07  Aligned_cols=82  Identities=21%  Similarity=0.244  Sum_probs=72.7

Q ss_pred             CCCccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEeccccc-CCcceeeEEEecCCHHHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFR-RRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~-t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ....++|.|+|||.. +|+++|+++|..             +|.+..+.++.|.. |+.+.|||||.|.+.++|.+++ .
T Consensus       207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~  272 (292)
T 2ghp_A          207 TLEGREIMIRNLSTELLDENLLRESFEG-------------FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q  272 (292)
T ss_dssp             CCTTTEEEEEEECTTTCCHHHHHHHHGG-------------GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred             CCCCceEEEECCCcccCCHHHHHHHHhc-------------cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence            455789999999999 999999999997             68899999999987 6889999999999999999999 9


Q ss_pred             hcCCcccccCCCCCceEEEEeccC
Q 037791          191 CNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      +||..+.      ++.+.|.||+.
T Consensus       273 l~g~~~~------g~~i~V~~a~~  290 (292)
T 2ghp_A          273 MNRSLLG------NREISVSLADK  290 (292)
T ss_dssp             GTTEEET------TEEEEEEECCC
T ss_pred             hcCCEEC------CcEEEEEEecC
Confidence            9999875      56899999975

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=98.99  E-value=5.8e-10  Score=91.23  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=68.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||+|+|||..+|+++|+++|.+.+..            ++  .+..|..++.+.|||||.|.+.++|.+++ .+|
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~------------~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~   74 (175)
T 1fje_B           10 STTPFNLFIGNLNPNKSVAELKVAISELFAK------------ND--LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELT   74 (175)
T ss_dssp             CSSSEEEEEECCCTTSCHHHHHHHHHHHHHH------------HT--CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGG
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCc------------ce--EEEEECCCCccccEEEEEECCHHHHHHHH-hcC
Confidence            4567899999999999999999999986532            22  45667778889999999999999999999 599


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..+.      ++.+.|.||..+
T Consensus        75 g~~~~------g~~l~v~~~~~~   91 (175)
T 1fje_B           75 GLKVF------GNEIKLEKPKGR   91 (175)
T ss_dssp             GEEET------TEEEEEECCCCS
T ss_pred             CCEeC------CeEEEEecCCCc
Confidence            99885      557899998754

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.98  E-value=6.6e-09  Score=91.75  Aligned_cols=78  Identities=21%  Similarity=0.211  Sum_probs=68.1

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.|..|.     .|||||.|.+.++|.++++.+|
T Consensus       204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~-------------~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~  265 (282)
T 3pgw_A          204 NPPNHILFLTNLPEETNELMLSMLFNQ-------------FPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQ  265 (282)
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHh-------------cCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcC
Confidence            345789999999999999999999997             6788888877544     4899999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEecc
Q 037791          193 KYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAr  213 (295)
                      |..+.     .++.+.|+||+
T Consensus       266 g~~~~-----~g~~l~v~~ak  281 (282)
T 3pgw_A          266 GFKIT-----QNNAMKISFAK  281 (282)
T ss_pred             CcEeC-----CCCEEEEEEec
Confidence            99886     25689999996

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=98.97  E-value=3.3e-10  Score=94.58  Aligned_cols=82  Identities=13%  Similarity=0.160  Sum_probs=68.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||.+.|+++|+++|..             +| ...+.|+.|.. +.++|||||.|.+.++|.+++ .+|
T Consensus        43 ~~~~~~lfV~nLp~~~te~dL~~~F~~-------------~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~  106 (139)
T 2hgn_A           43 STTGHCVHMRGLPYKATENDIYNFFSP-------------LN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKD  106 (139)
T ss_dssp             --CCCCEECCSCCTTCCHHHHHHHHCS-------------CC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------cC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhC
Confidence            345679999999999999999999987             56 55899999976 889999999999999999999 789


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |+.+.      .+.++|.+|....
T Consensus       107 g~~l~------gR~i~V~~a~~~~  124 (139)
T 2hgn_A          107 RANMQ------HRYIELFLNSTTG  124 (139)
T ss_dssp             SCSSS------SCCCCCEECCCSC
T ss_pred             CCEEC------CEEEEEEECCCCC
Confidence            98775      4467888877544

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.97  E-value=1.4e-09  Score=91.10  Aligned_cols=77  Identities=16%  Similarity=0.162  Sum_probs=68.9

Q ss_pred             ccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          116 NTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       116 RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .+||+|+|||. .+|+++|+++|..             +|.+..+.+..|.     .|||||.|.+.++|.++++.+||.
T Consensus         3 ~~~l~v~nlp~~~~~~~~l~~~F~~-------------~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~   64 (198)
T 1qm9_A            3 NSVLLVSNLNPERVTPQSLFILFGV-------------YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH   64 (198)
T ss_dssp             CCEEEEECCCSSSCCHHHHHHHHHT-------------TCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHh-------------cCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC
Confidence            57999999999 9999999999997             6788888888875     689999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      ++.+.|.||+.+.
T Consensus        65 ~~~------g~~l~v~~a~~~~   80 (198)
T 1qm9_A           65 KLH------GKPIRITLSKHQN   80 (198)
T ss_dssp             CCS------SCCCEEEECCCCS
T ss_pred             eec------CeEEEEEEecCCC
Confidence            885      4578999998664

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.96  E-value=1.7e-09  Score=94.06  Aligned_cols=77  Identities=9%  Similarity=0.097  Sum_probs=68.3

Q ss_pred             ccEEEEcCCC-CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          116 NTTLMIRNIP-NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       116 RTTVMIRNIP-Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .+||+|+||| .++|+++|.++|..             +|.+.-+.+..|     ..|||||.|.++++|..+++.+||.
T Consensus         4 ~~~l~V~nL~~~~~~~~~L~~~F~~-------------~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~   65 (205)
T 3tyt_A            4 SPVLMVYGLDQSKMNCDRVFNVFCL-------------YGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNN   65 (205)
T ss_dssp             CSEEEEECCCTTTCCHHHHHHHHTT-------------TSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHHh-------------cCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCC
Confidence            5799999999 89999999999987             788888888765     2699999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      ++.+.|.||+.+.
T Consensus        66 ~~~------g~~l~v~~s~~~~   81 (205)
T 3tyt_A           66 FMF------GQKMNVCVSKQPA   81 (205)
T ss_dssp             EET------TEECEEEECSCSC
T ss_pred             EEC------CceEEEEEccCCc
Confidence            985      5689999998654

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.95  E-value=3.1e-09  Score=93.82  Aligned_cols=82  Identities=20%  Similarity=0.251  Sum_probs=68.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHH----HHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLL----HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFW  188 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll----~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~  188 (295)
                      ....+||.|+|||..+|+++|+    ++|..             +|.+..+.+..   ++.++|||||.|.+.++|.+++
T Consensus         6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-------------~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~   69 (282)
T 3pgw_A            6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQ-------------FGQILDILVSR---SLKMRGQAFVIFKEVSSATNAL   69 (282)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-------------cCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHH
Confidence            3446799999999999999987    55554             67777777765   6778999999999999999999


Q ss_pred             HHhcCCcccccCCCCCceEEEEeccCcC
Q 037791          189 KACNKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       189 ~~fnG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +.+||..|.      ++.+.|.||+.+.
T Consensus        70 ~~l~g~~~~------g~~l~v~~a~~~~   91 (282)
T 3pgw_A           70 RSMQGFPFY------DKPMRIQYAKTDS   91 (282)
T ss_pred             HHhcCCeeC------CcEEEEEEeccCc
Confidence            999999885      4689999997654

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=98.94  E-value=1.8e-09  Score=85.52  Aligned_cols=72  Identities=17%  Similarity=0.161  Sum_probs=63.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -+.|.|+||+...|+++|+++|.++             |...-++|..      ++|||||-|.+.++|.++++.+||..
T Consensus         7 ~~wL~VgNL~~~~te~~L~~lF~q~-------------G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~   67 (89)
T 2wbr_A            7 SSWLLLKNLTAQIDGPTLRTLCMQH-------------GPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCV   67 (89)
T ss_dssp             CCEEEEECCCTTCCCHHHHHHHHHH-------------SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEE
T ss_pred             cceEEEeCCCccCCHHHHHHHHHhh-------------CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCE
Confidence            5689999999999999999999995             5666666644      58999999999999999999999998


Q ss_pred             ccccCCCCCceEEEEec
Q 037791          196 WEVEAPGNKKMCEIACA  212 (295)
Q Consensus       196 w~~~~~gS~KiceVsyA  212 (295)
                      +.      ++.+.|.+|
T Consensus        68 l~------gr~I~V~~A   78 (89)
T 2wbr_A           68 LA------NTTIFAESP   78 (89)
T ss_dssp             ET------TEEEEEECC
T ss_pred             EC------CcEEEEEEC
Confidence            85      568999999

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.94  E-value=2.4e-09  Score=93.08  Aligned_cols=79  Identities=15%  Similarity=0.137  Sum_probs=70.0

Q ss_pred             CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ....+||+|+|||. .+|+++|+++|..             +|.+..+.|..|.     .|||||.|.+.++|.++++.+
T Consensus        31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~-------------~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l   92 (229)
T 2adc_A           31 GAGNSVLLVSNLNPERVTPQSLFILFGV-------------YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHL   92 (229)
T ss_dssp             CCCCSEEEEESCCTTTCCHHHHHHHHHH-------------HTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHh-------------CCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHh
Confidence            34578999999999 9999999999998             6788888888875     699999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCc
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      ||..|.      ++.+.|.||+.+
T Consensus        93 ~g~~~~------g~~l~v~~a~~~  110 (229)
T 2adc_A           93 NGHKLH------GKPIRITLSKHQ  110 (229)
T ss_dssp             TTCBCS------SSBCEEECCSCC
T ss_pred             CCCeEC------CeEEEEEEecCc
Confidence            999885      457899999865

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.94  E-value=2.1e-09  Score=79.37  Aligned_cols=74  Identities=15%  Similarity=0.261  Sum_probs=56.4

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|.|||..+|+++|+++|.+.+.....  .....+....+.+..|      .|||||.|.+.++|.+++ .+||.
T Consensus         5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~--~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~   75 (87)
T 2hzc_A            5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGL--TQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI   75 (87)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTC--CSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhhccc--ccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence            35699999999999999999999985210000  0000116677777655      699999999999999999 99999


Q ss_pred             ccc
Q 037791          195 KWE  197 (295)
Q Consensus       195 ~w~  197 (295)
                      .|.
T Consensus        76 ~~~   78 (87)
T 2hzc_A           76 IFQ   78 (87)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.93  E-value=2.5e-09  Score=94.92  Aligned_cols=84  Identities=13%  Similarity=0.187  Sum_probs=74.3

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .++|.|+|||..+|.++|.++|..             +|.+..+.++.| .++.+.|||||.|.+.++|.++++.+||..
T Consensus        96 ~~~l~v~nl~~~~t~~~l~~~F~~-------------~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~  161 (261)
T 3sde_A           96 GAALTVKNLSPVVSNELLEQAFSQ-------------FGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGA  161 (261)
T ss_dssp             SSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred             CCcccccCCCCCCCHHHHHHHHHh-------------cCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence            569999999999999999999987             788999999999 688999999999999999999999997766


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      +-..  +..+.+.|.||..+
T Consensus       162 ~~~~--~~~r~i~v~~~~~~  179 (261)
T 3sde_A          162 FLLT--TTPRPVIVEPMEQF  179 (261)
T ss_dssp             EESS--SSCCBCEEEECCCE
T ss_pred             EEec--CCCceEEEeecccc
Confidence            6543  36778999999754

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.91  E-value=3.2e-09  Score=88.94  Aligned_cols=79  Identities=13%  Similarity=0.165  Sum_probs=67.0

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...+||.|+|||..+|+++|+++|..             +| .+..+.+-.+     +.|||||.|.+.++|.++++.+|
T Consensus       118 ~~~~~l~v~nl~~~~~~~~l~~~f~~-------------~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~  179 (198)
T 1qm9_A          118 PPSATLHLSNIPPSVSEEDLKVLFSS-------------NGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH  179 (198)
T ss_dssp             CCCCEEEECCCCTTCCHHHHHHHHHH-------------TTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHT
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHH-------------cCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhc
Confidence            34689999999999999999999998             57 7777776332     26999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..+.     .++.+.|.||+.+
T Consensus       180 g~~~~-----~g~~l~v~~a~~~  197 (198)
T 1qm9_A          180 NHDLG-----ENHHLRVSFSKST  197 (198)
T ss_dssp             SSCCS-----SCCSCCEEEECCC
T ss_pred             CCccC-----CCCeEEEEeeccc
Confidence            99985     2457899999865

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=98.91  E-value=1.6e-09  Score=89.24  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=65.5

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCcc--EEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFD--FLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YD--FlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      ....++|.|+|||...|+++|+++|..             + .+.  .+.|+.|.. +.++|||||.|.++++|.++++.
T Consensus        39 ~~~~~~lfVgnLp~~~te~dL~~~F~~-------------~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~  103 (126)
T 2hgm_A           39 SANDGFVRLRGLPFGCTKEEIVQFFSG-------------L-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK  103 (126)
T ss_dssp             SSSCCEEEEECCCTTCCHHHHHHHTTT-------------S-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhc-------------C-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH
Confidence            344678999999999999999999987             3 344  789999987 88999999999999999999985


Q ss_pred             hcCCcccccCCCCCceEEEEecc
Q 037791          191 CNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                       +|..+.      .+.++|.+|.
T Consensus       104 -~~~~l~------gR~I~V~~a~  119 (126)
T 2hgm_A          104 -HKERIG------HRYIEVFKSS  119 (126)
T ss_dssp             -TTCCBT------TBCCCCEEEC
T ss_pred             -CCCEEC------CEEEEEEECC
Confidence             676554      4467777774

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.91  E-value=3.7e-09  Score=93.79  Aligned_cols=85  Identities=16%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...+||.|+|||..+|+++|.++|..             +| .+..++++.|.. +.+.|||||.|.+.++|.++++.+|
T Consensus       115 ~~~~~l~v~nlp~~~t~~~l~~~f~~-------------~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~  180 (292)
T 2ghp_A          115 LTECTLWMTNFPPSYTQRNIRDLLQD-------------INVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLN  180 (292)
T ss_dssp             CCSCEEEEECCCTTCCHHHHHHHHHH-------------TTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHH-------------hCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhC
Confidence            35789999999999999999999998             67 889999998876 6789999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcChH
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGRD  218 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk~  218 (295)
                      |..+.      ++.+.|.||..+...
T Consensus       181 g~~~~------g~~l~v~~a~~~~~~  200 (292)
T 2ghp_A          181 GLKIE------GYTLVTKVSNPLEKS  200 (292)
T ss_dssp             TCEET------TEECEEEECCCC---
T ss_pred             CCEeC------CcEEEEEECCCCccc
Confidence            99985      467899999877543

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=2.2e-09  Score=81.29  Aligned_cols=76  Identities=8%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|.|||..+|+++|+++|..             +|.+.-+  .+|..++.   ||||.|.+.++|.++++ +||+
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~-------------~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~   67 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLA-------------FGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH   67 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGG-------------TSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHh-------------cCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe
Confidence            3469999999999999999999997             5666554  77776665   99999999999999999 9999


Q ss_pred             cccccCCCCCceEEEEeccCc
Q 037791          195 KWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQ  215 (295)
                      .+.      .+.+.|.+|...
T Consensus        68 ~~~------g~~l~V~~a~~~   82 (94)
T 2e5g_A           68 SLG------GHRLRVRPREQK   82 (94)
T ss_dssp             EET------TEECCCBCSCCS
T ss_pred             EEC------CEEEEEEECCcC
Confidence            985      456788777543

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.88  E-value=6.7e-09  Score=90.25  Aligned_cols=79  Identities=13%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ...+||.|+|||..+|+++|+++|..             +| .+..+.+-.+     +.|||||.|.+.++|.++++.+|
T Consensus       149 ~~~~~l~V~nlp~~~t~~~l~~~f~~-------------~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~  210 (229)
T 2adc_A          149 PPSATLHLSNIPPSVSEEDLKVLFSS-------------NGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH  210 (229)
T ss_dssp             CSCSEEEEECCCTTCCHHHHHHHHHT-------------TSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHH-------------cCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHC
Confidence            34689999999999999999999998             57 7777776222     36999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..+.     .++.+.|+||+.|
T Consensus       211 g~~~~-----~g~~l~v~~a~~~  228 (229)
T 2adc_A          211 NHDLG-----ENHHLRVSFSKST  228 (229)
T ss_dssp             TCBSS-----SSCBCEEEECSSC
T ss_pred             CCccC-----CCCeEEEEEecCC
Confidence            99985     2557999999865

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.87  E-value=7.4e-09  Score=89.67  Aligned_cols=82  Identities=9%  Similarity=-0.014  Sum_probs=69.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..-.+|.|.|||..+|+++|.++|..             +|.+.-+++..    +.+.|||||.|.+.++|.++++.+||
T Consensus        44 s~vl~l~VgNL~~~vted~L~~~Fs~-------------fG~V~~V~i~~----k~~rgfAFVeF~d~~~A~~Ai~~LnG  106 (164)
T 1sjr_A           44 SPVLRIIVENLFYPVTLDVLHQIFSK-------------FGTVLKIITFT----KNNQFQALLQYADPVSAQHAKLSLDG  106 (164)
T ss_dssp             CCEEEEEECSCCSCCCHHHHHHHHHH-------------HSCEEEEEEEE----SSSCEEEEEEESCHHHHHHHHHHSTT
T ss_pred             CceEEEEEeCcCCCCCHHHHHHHHHh-------------cCCEEEEEEEe----CCCCCEEEEEECCHHHHHHHHHHhCC
Confidence            33568999999999999999999998             67888888742    23579999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..+..    ..+.+.|.||+.+.
T Consensus       107 ~~i~g----~g~~L~V~~Ak~~~  125 (164)
T 1sjr_A          107 QNIYN----ACCTLRIDFSKLTS  125 (164)
T ss_dssp             BCSSS----SCSCEEEEECSSSS
T ss_pred             CEecC----CCcEEEEEEecCCc
Confidence            99852    23578999999874

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=98.85  E-value=1.1e-08  Score=81.03  Aligned_cols=80  Identities=8%  Similarity=0.060  Sum_probs=67.4

Q ss_pred             ccEEEEcCCCC--cc---CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccC-CcceeeEEEecCCHHHHHHHHH
Q 037791          116 NTTLMIRNIPN--NL---KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRR-RANLGYAFVNFTTAAGALRFWK  189 (295)
Q Consensus       116 RTTVMIRNIPN--k~---Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t-~~N~GYAFVNF~spedA~~F~~  189 (295)
                      ..+|.|+|+..  .+   ++++|+++|.+             +|...-++++.|..+ +.++|||||.|.++++|.++++
T Consensus         8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-------------~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~   74 (105)
T 2pe8_A            8 TKVVLLRNMVGAGEVDEDLEVETKEECEK-------------YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVV   74 (105)
T ss_dssp             CSEEEEESSSCSCCC---CHHHHHHHGGG-------------GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEEcCCChHHhhHHHHHHHHHHHHh-------------cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHH
Confidence            45899999974  23   56778777776             789999999998754 5789999999999999999999


Q ss_pred             HhcCCcccccCCCCCceEEEEeccC
Q 037791          190 ACNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       190 ~fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      .+||..+.      ++.+.|.||..
T Consensus        75 ~lnG~~~~------Gr~i~v~~a~~   93 (105)
T 2pe8_A           75 DLNGRYFG------GRVVKACFYNL   93 (105)
T ss_dssp             HHTTCEET------TEECEEEECCH
T ss_pred             HHCCCEEC------CcEEEEEEcCH
Confidence            99999985      56899999963

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.85  E-value=1.6e-08  Score=79.58  Aligned_cols=76  Identities=20%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             ccEEEEcCC--CCccC---------HHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHH
Q 037791          116 NTTLMIRNI--PNNLK---------RRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGA  184 (295)
Q Consensus       116 RTTVMIRNI--PNk~T---------q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA  184 (295)
                      ..||+|+||  |..+.         +++|+++|.+             +|.+.-+++ .|.   .+.|||||.|.+.++|
T Consensus        15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-------------~G~v~~v~i-~~~---~~~G~afV~f~~~~~A   77 (112)
T 2dit_A           15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-------------FGQIRKLLL-FDR---HPDGVASVSFRDPEEA   77 (112)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-------------TSCCSEEEE-ETT---CTTCEEEEECSCHHHH
T ss_pred             ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-------------cCCEeEEEE-ecC---CCCEEEEEEECCHHHH
Confidence            458999999  44432         4677777776             678888877 443   2689999999999999


Q ss_pred             HHHHHHhcCCcccccCCCCCceEEEEeccC
Q 037791          185 LRFWKACNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      .++++.+||+.+.      .+.+.|.||..
T Consensus        78 ~~Ai~~lng~~~~------gr~l~v~~a~~  101 (112)
T 2dit_A           78 DYCIQTLDGRWFG------GRQITAQAWDG  101 (112)
T ss_dssp             HHHHHHSTTCEET------TEECEEEECCS
T ss_pred             HHHHHHcCCCEEC------CcEEEEEEeCC
Confidence            9999999999885      56889999864

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.83  E-value=3.9e-08  Score=80.98  Aligned_cols=77  Identities=19%  Similarity=0.100  Sum_probs=64.6

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceee-EEEecCCHHHHHHHHHHhcCCcc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGY-AFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GY-AFVNF~spedA~~F~~~fnG~~w  196 (295)
                      .|.|.|||..+|+++|.++|.+             +|.+.-+.+..  +   + || |||.|.+.++|..+++.+||..+
T Consensus        27 ~l~V~NL~~~vt~~~L~~~Fs~-------------yG~V~~v~i~~--~---~-Gf~aFVef~~~~~A~~A~~~LnG~~i   87 (124)
T 2e5i_A           27 LLSIQNPLYPITVDVLYTVCNP-------------VGKVQRIVIFK--R---N-GIQAMVEFESVLCAQKAKAALNGADI   87 (124)
T ss_dssp             EEEEESCCSCCCHHHHHHHHTT-------------TSCEEEEEEEE--S---S-SEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred             EEEEcCcCCCCCHHHHHHHHHh-------------cCCEEEEEEEe--C---C-CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence            4568999999999999999998             68888888742  1   2 85 99999999999999999999999


Q ss_pred             cccCCCCCceEEEEeccCcCh
Q 037791          197 EVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQGk  217 (295)
                      ..    ....+.|.||+.+..
T Consensus        88 ~g----~~~~l~V~~Ak~~~l  104 (124)
T 2e5i_A           88 YA----GCCTLKIEYARPTRL  104 (124)
T ss_dssp             BT----TBSEEEEECCSCSCC
T ss_pred             cC----CCeEEEEEEecCCcc
Confidence            62    224789999997753

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.82  E-value=1.5e-08  Score=89.88  Aligned_cols=89  Identities=15%  Similarity=0.271  Sum_probs=73.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|..             +|.+..+.+..      +.|||||.|.+.++|..+++.+|
T Consensus        19 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~   79 (261)
T 3sde_A           19 YTQRCRLFVGNLPTDITEEDFKRLFER-------------YGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELD   79 (261)
T ss_dssp             SCGGGEEEEESCCTTCCHHHHHHHTGG-------------GCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHh-------------cCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcC
Confidence            466889999999999999999999987             67777777743      46999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcC------------hHHHHHHhcc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG------------RDALEKHFER  226 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG------------k~aLv~hFrn  226 (295)
                      |..+.      ++.+.|.||....            .+.|.+.|..
T Consensus        80 g~~i~------g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~  119 (261)
T 3sde_A           80 GTILK------SRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQ  119 (261)
T ss_dssp             TCEET------TEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGG
T ss_pred             CcEEC------CceeEeeecccCCcccccCCCCCCCHHHHHHHHHh
Confidence            99885      4578888876321            2467777754

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=98.79  E-value=1.4e-08  Score=92.32  Aligned_cols=84  Identities=15%  Similarity=0.106  Sum_probs=67.9

Q ss_pred             CCCccEEEEcCCCCcc---------CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHH
Q 037791          113 LGENTTLMIRNIPNNL---------KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAG  183 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~---------Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~sped  183 (295)
                      ....+||.|.|||..+         ++++|+++|.+             +|.+..+.+..      ++|||||.|.+.++
T Consensus       131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-------------fG~I~~v~v~~------~kG~AFV~F~~~~~  191 (240)
T 3u1l_A          131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-------------LGDIDRIRYVE------SKNCGFVKFKYQAN  191 (240)
T ss_dssp             CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-------------TSCEEEEEEEG------GGTEEEEEESSHHH
T ss_pred             ccCCceeecCCCChhhhcccccccCcHHHHHHHHHc-------------cCCEEEEEEEC------CCCEEEEEeCCHHH
Confidence            3457899999999998         79999999998             78888888764      47999999999999


Q ss_pred             HHHHHHHhcCCccccc------CCCCCceEEEEeccCc
Q 037791          184 ALRFWKACNKYKWEVE------APGNKKMCEIACADIQ  215 (295)
Q Consensus       184 A~~F~~~fnG~~w~~~------~~gS~KiceVsyAriQ  215 (295)
                      |+.+++.+||+.+..-      ..+.++.+.|.||+-.
T Consensus       192 Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          192 AEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             HHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred             HHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence            9999999999988100      0013568999999854

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=98.77  E-value=1.6e-08  Score=87.45  Aligned_cols=77  Identities=21%  Similarity=0.298  Sum_probs=66.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||.|+|||...|+++|.++|..             +|.+..+.|+.|.. +.+.|||||.|.+.++|.++++..+ ..
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~-------------~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~  173 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLED-------------KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QK  173 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTT-------------SCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CE
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhc-------------CCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-Ce
Confidence            579999999999999999999997             78899999999864 8889999999999999999997664 45


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      |.      ++.+.|.|++
T Consensus       174 ~~------Gr~l~V~~~~  185 (193)
T 2voo_A          174 YK------ETDLLILFKD  185 (193)
T ss_dssp             ET------TEECEEEETT
T ss_pred             EC------CEEEEEEEhH
Confidence            53      5578888865

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.76  E-value=3.8e-08  Score=82.09  Aligned_cols=82  Identities=9%  Similarity=0.008  Sum_probs=69.4

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceee-EEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGY-AFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GY-AFVNF~spedA~~F~~~fn  192 (295)
                      ..-..|.|.|||..+|+++|.++|.+             +|.+.-+.+..+     +.|| |||.|.+.++|..+++.+|
T Consensus        26 s~VL~I~V~NL~~~vte~~L~~lFs~-------------yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~Ln   87 (130)
T 3zzy_A           26 SPVLRIIVENLFYPVTLDVLHQIFSK-------------FGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLD   87 (130)
T ss_dssp             CSEEEEEEESCCSCCCHHHHHHHHTT-------------SSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCCCHHHHHHHHhC-------------cCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcC
Confidence            44678899999999999999999998             788888877643     2477 9999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..|..    ..+.+.|.||+.+..
T Consensus        88 G~~i~g----~~~~LrI~~ak~~~l  108 (130)
T 3zzy_A           88 GQNIYN----ACCTLRIDFSKLTSL  108 (130)
T ss_dssp             TCEEET----TEEEEEEEECSCSSC
T ss_pred             CCeecC----CCcEEEEEecCCCce
Confidence            999963    246889999997743

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.75  E-value=3.7e-09  Score=87.61  Aligned_cols=85  Identities=13%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||+|+|||.++|+++|+++|..++........  ....+-.+.      ++.+.|||||.|.+.++|.+++ .+||..
T Consensus         4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~--~~~~v~~~~------~~~~~g~afV~F~~~~~A~~Al-~l~g~~   74 (198)
T 2yh0_A            4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQA--PGNPVLAVQ------INQDKNFAFLEFRSVDETTQAM-AFDGII   74 (198)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSS--SSCSEEEEE------EETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred             eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccC--CCCceEEeE------ecCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence            4699999999999999999999986532210000  000222222      2456899999999999999999 899998


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      |.      ++.+.|.||...
T Consensus        75 ~~------g~~i~v~~~~~~   88 (198)
T 2yh0_A           75 FQ------GQSLKIRRPHDY   88 (198)
T ss_dssp             ET------TEEEEEECCCCC
T ss_pred             Ec------CceEEEeCCCCC
Confidence            85      557899988653

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.73  E-value=2.5e-08  Score=80.79  Aligned_cols=86  Identities=13%  Similarity=0.215  Sum_probs=61.7

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|+|||..+|+++|+++|.+.+.......  ........+.+      +.+.|||||.|.++++|.+++ .+||.
T Consensus         3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~--~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~   73 (172)
T 2g4b_A            3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ--APGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGI   73 (172)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS--SSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred             cccEEEEcCCCcccCHHHHHHHHHHHhhhccccc--CCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCc
Confidence            3579999999999999999999998643211000  00002333333      344799999999999999999 89999


Q ss_pred             cccccCCCCCceEEEEeccCc
Q 037791          195 KWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQ  215 (295)
                      .+.      ++.+.|.++...
T Consensus        74 ~~~------g~~i~v~~~~~~   88 (172)
T 2g4b_A           74 IFQ------GQSLKIRRPHDY   88 (172)
T ss_dssp             EET------TEECEEECCSSC
T ss_pred             Eec------CceeeecCCccc
Confidence            885      456788887643

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=4e-08  Score=78.92  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=59.6

Q ss_pred             CCccEEEEcCCCCccCHHHHH----HHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHH
Q 037791          114 GENTTLMIRNIPNNLKRRDLL----HILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWK  189 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll----~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~  189 (295)
                      ...|+|+|+|||.+.+.++|+    ++|++++            |+.=-+       ++   |+|||.|.+.++|.++++
T Consensus         7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG------------G~Vl~V-------tg---G~AfV~F~~~esA~~A~~   64 (96)
T 2diu_A            7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG------------GKVLSI-------TG---CSAILRFINQDSAERAQK   64 (96)
T ss_dssp             CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT------------CCEEEC-------CT---TCEEEEESSHHHHHHHHH
T ss_pred             CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC------------CeeEEE-------ec---CEEEEEECCHHHHHHHHH
Confidence            457889999999999999865    5666531            233222       33   999999999999999999


Q ss_pred             HhcCCcccccCCCCCceEEEEeccCcC
Q 037791          190 ACNKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       190 ~fnG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+||..+.      .|.+.|.||+...
T Consensus        65 ~l~G~~l~------gr~i~v~~A~~~s   85 (96)
T 2diu_A           65 RMENEDVF------GNRIIVSFTPKNR   85 (96)
T ss_dssp             HHTTCCSS------SSCCEEESSCCSC
T ss_pred             HhcCCccC------CceEEEEecCCCc
Confidence            99999875      6789999998653

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.69  E-value=4.6e-08  Score=85.08  Aligned_cols=80  Identities=11%  Similarity=0.103  Sum_probs=63.5

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCc--cEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEF--DFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~Y--DFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      .+||.|+|||..+|+++|+++|.+             +|.+  ..+-+..|.  +...|||||.|.+.++|.++++.+||
T Consensus       123 ~~~l~v~NLp~~~t~~~L~~~F~~-------------~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng  187 (205)
T 3tyt_A          123 SNVLHFFNAPLEVTEENFFEICDE-------------LGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNH  187 (205)
T ss_dssp             CSEEEEEEECTTCCHHHHHHHHHH-------------HTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred             cceEEEeCCCCCCCHHHHHHHHHh-------------cCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence            468999999999999999999998             4666  556665554  33459999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEec
Q 037791          194 YKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyA  212 (295)
                      +.+..-.  +.....|-||
T Consensus       188 ~~~~g~~--~~~p~~vk~~  204 (205)
T 3tyt_A          188 YQMKNPN--GPYPYTLKLC  204 (205)
T ss_dssp             CEECCSS--SSSCEECEEE
T ss_pred             CCccCCC--CCcceEEEec
Confidence            9997543  4445555544

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=98.67  E-value=6.5e-08  Score=76.49  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=64.5

Q ss_pred             cEEEEcCC--CCccCH--------HHHHHHHhhhchhhhhcccCccCCCccEEEecccccCC--cceeeEEEecCCHHHH
Q 037791          117 TTLMIRNI--PNNLKR--------RDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRR--ANLGYAFVNFTTAAGA  184 (295)
Q Consensus       117 TTVMIRNI--PNk~Tq--------~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~--~N~GYAFVNF~spedA  184 (295)
                      ..|.|+|+  |..+..        ++|++++.+             +|...-++++.|..++  .++|||||.|.++++|
T Consensus         6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-------------~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A   72 (105)
T 3v4m_A            6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-------------YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC   72 (105)
T ss_dssp             SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-------------TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred             eEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-------------cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence            47899998  666643        455555554             7899999999998653  5789999999999999


Q ss_pred             HHHHHHhcCCcccccCCCCCceEEEEeccC
Q 037791          185 LRFWKACNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       185 ~~F~~~fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      .++++.+||..+.      ++.+.|+|+..
T Consensus        73 ~~Ai~~lnG~~f~------GR~i~v~~~~~   96 (105)
T 3v4m_A           73 QKAMQGLTGRKFA------NRVVVTKYCDP   96 (105)
T ss_dssp             HHHHHHHTTCEET------TEECEEEEECH
T ss_pred             HHHHHHhCCCEeC------CCEEEEEEeCH
Confidence            9999999999885      56889999864

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=98.66  E-value=6.5e-08  Score=78.59  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             ccEEEEcCCC--CccC---HHHHHHHHhhhchhhhhcccCccCCCccEEEeccccc----CCcceeeEEEecCCHHHHHH
Q 037791          116 NTTLMIRNIP--NNLK---RRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFR----RRANLGYAFVNFTTAAGALR  186 (295)
Q Consensus       116 RTTVMIRNIP--Nk~T---q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~----t~~N~GYAFVNF~spedA~~  186 (295)
                      -.+|.|+|+-  ..+.   +++|++++.+             +|...-++++.|..    ++..+|||||.|.++++|.+
T Consensus        20 s~vl~L~Nm~~~~el~ddleedl~eef~k-------------~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~   86 (118)
T 3ue2_A           20 STVMVLRNMVDPKDIDDDLEGEVTEECGK-------------FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHK   86 (118)
T ss_dssp             CCEEEEESCSCGGGCCTTHHHHHHHHHTT-------------TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHhc-------------cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHH
Confidence            4589999994  3333   3455555554             78999999999976    35678999999999999999


Q ss_pred             HHHHhcCCcccccCCCCCceEEEEeccC
Q 037791          187 FWKACNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       187 F~~~fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      +++.+||..+.      ++.+.|+|+..
T Consensus        87 Ai~~LnGr~f~------GR~i~v~~~~~  108 (118)
T 3ue2_A           87 AIQALNGRWFA------GRKVVAEVYDQ  108 (118)
T ss_dssp             HHHHHTTCEET------TEECEEEEECH
T ss_pred             HHHHHCCCEEC------CcEEEEEEcCh
Confidence            99999999885      56889999863

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=98.56  E-value=1.7e-07  Score=79.47  Aligned_cols=78  Identities=8%  Similarity=0.050  Sum_probs=67.4

Q ss_pred             cEEEEcCC----CCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCC----HHH----H
Q 037791          117 TTLMIRNI----PNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTT----AAG----A  184 (295)
Q Consensus       117 TTVMIRNI----PNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~s----ped----A  184 (295)
                      |+|+|.||    |...+++.|+++|.+             +|++.-+-+..|..|+.++|||||-|.+    +++    |
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-------------fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA   69 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKK-------------YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAA   69 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHT-------------TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHH
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHh-------------cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHH
Confidence            79999999    999999999999998             8899999999999999999999999996    433    7


Q ss_pred             HHHHH--HhcCCcccccCCCCCceEEEEecc
Q 037791          185 LRFWK--ACNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       185 ~~F~~--~fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      .+++.  .+||..+.      +..+.|.+=+
T Consensus        70 ~kAi~~~~lng~~I~------Gr~irV~ln~   94 (136)
T 2j8a_A           70 FSAVRKHESSGCFIM------GFKFEVILNK   94 (136)
T ss_dssp             HHHHHHTTTTCEEET------TEEEEEEECC
T ss_pred             HHHHHHhhhcCCeec------CcEEEEEECc
Confidence            88888  67999986      4467887744

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.54  E-value=6.1e-08  Score=76.41  Aligned_cols=82  Identities=9%  Similarity=0.093  Sum_probs=59.5

Q ss_pred             CCCCccCHHHHHHHHhhhchhhhhcccC-ccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCC
Q 037791          123 NIPNNLKRRDLLHILDSHCRVEYLKSKW-HCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAP  201 (295)
Q Consensus       123 NIPNk~Tq~~Ll~ilDe~c~~en~k~~~-~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~  201 (295)
                      +||..+|+++|.+.++.....-.  .+= .-+|.+.-+.++.|.. +.++|||||.|.++++|.++++.+||+.+.    
T Consensus        22 ~l~~~~~~~~l~~~f~~~~edl~--~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----   94 (104)
T 1jmt_A           22 GLRSAVSDVEMQEHYDEFFEEVF--TEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFN----   94 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEET----
T ss_pred             CcccccCHHHHHHHHHHHHHHHH--HHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEEC----
Confidence            45556678888776643211000  000 1179999999998865 678999999999999999999999999875    


Q ss_pred             CCCceEEEEecc
Q 037791          202 GNKKMCEIACAD  213 (295)
Q Consensus       202 gS~KiceVsyAr  213 (295)
                        ++.+.|.||.
T Consensus        95 --Gr~i~v~~sp  104 (104)
T 1jmt_A           95 --GQPIHAELSP  104 (104)
T ss_dssp             --TEECCEEECC
T ss_pred             --CEEEEEEEcC
Confidence              5677888873

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=98.51  E-value=2.4e-07  Score=88.28  Aligned_cols=84  Identities=21%  Similarity=0.301  Sum_probs=67.0

Q ss_pred             cccCCCCccEEEEcC--CCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHH
Q 037791          109 YGAMLGENTTLMIRN--IPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALR  186 (295)
Q Consensus       109 ~~~~~d~RTTVMIRN--IPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~  186 (295)
                      +......-.||.|.|  |+...|+++|+++|.+             +|+.+.+.++.      ++|||||.|.+.++|.+
T Consensus        11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-------------~G~V~~v~~~~------~kgfaFV~f~~~~~A~~   71 (345)
T 3tht_A           11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEK-------------CGLVDALLMPP------NKPYSFARYRTTEESKR   71 (345)
T ss_dssp             CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHT-------------TSCEEEEECCT------TCSEEEEEESSHHHHHH
T ss_pred             ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-------------cCCeEEEEEeC------CCCEEEEEECCHHHHHH
Confidence            333344455999999  5889999999999998             68888888764      46999999999999999


Q ss_pred             HHHHhcCCcccccCCCCCceEEEEec
Q 037791          187 FWKACNKYKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       187 F~~~fnG~~w~~~~~gS~KiceVsyA  212 (295)
                      +++.+||..+-... |.++++-|+|+
T Consensus        72 Ai~~lnG~~~~~~~-g~~~~ly~~~~   96 (345)
T 3tht_A           72 AYVTLNGKEVVDDL-GQKITLYLNFV   96 (345)
T ss_dssp             HHHHTTTCEEECTT-SCEEECEEEEC
T ss_pred             HHHHhCCCcccccc-CCceEEEEEEe
Confidence            99999999884332 33446677777

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=4.8e-07  Score=71.55  Aligned_cols=66  Identities=21%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCc
Q 037791          126 NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKK  205 (295)
Q Consensus       126 Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~K  205 (295)
                      ..+|+++|+++|.+             +|.+..++|+     +.++|||||.|.+.++|..+++..+|.        ..+
T Consensus        27 ~~~te~~L~~~F~~-------------~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~--------~g~   80 (100)
T 2d9o_A           27 GGYSKDVLLRLLQK-------------YGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL--------VDN   80 (100)
T ss_dssp             CSCCHHHHHHHHHT-------------TSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC--------SSS
T ss_pred             CCCCHHHHHHHHHh-------------cCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC--------CCC
Confidence            46899999999998             7888889887     357899999999999999999986553        245


Q ss_pred             eEEEEeccCcCh
Q 037791          206 MCEIACADIQGR  217 (295)
Q Consensus       206 iceVsyAriQGk  217 (295)
                      .+.|.||+.+..
T Consensus        81 ~l~V~~a~~~~~   92 (100)
T 2d9o_A           81 PLKISWLEGQPQ   92 (100)
T ss_dssp             BCEEECSSCCCC
T ss_pred             eEEEEEccCCCC
Confidence            789999987753

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.20  E-value=6.2e-06  Score=66.57  Aligned_cols=89  Identities=15%  Similarity=0.167  Sum_probs=65.7

Q ss_pred             EEEEcCCCCccC------HHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          118 TLMIRNIPNNLK------RRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       118 TVMIRNIPNk~T------q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .|.|+|+=..-.      .++|.+-|.+.|.         -+|...-++++.|.    .+|||||.|.+.++|.++++.+
T Consensus         9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~---------kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~l   75 (114)
T 3s6e_A            9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECN---------KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNAL   75 (114)
T ss_dssp             EEEEESSCCTTTCCSTTHHHHHHHHHHHHHT---------TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHH
T ss_pred             EEEEECCCChHHccChhHHHHHHHHHHHHHh---------ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHh
Confidence            688999855443      3444444444331         17888889997763    4899999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcChHHHHHHhcccc
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQGRDALEKHFERFK  228 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQGk~aLv~hFrnS~  228 (295)
                      ||..+.      ++.+.|.|+..+.   -.++|.++.
T Consensus        76 nG~~f~------GR~i~v~~~~~~~---y~~~fp~a~  103 (114)
T 3s6e_A           76 HGRWFA------GKMITAAYVPLPT---YHNLFPDSM  103 (114)
T ss_dssp             TTCEET------TEECEEEEECHHH---HHHHCGGGS
T ss_pred             CCCEEC------CEEEEEEEEcHHH---HHHhCcccc
Confidence            999885      6689999997553   345666554

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=97.51  E-value=0.00021  Score=61.55  Aligned_cols=55  Identities=13%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             CCCccEEEeccccc----CCcceeeEEEecCCHHHHHHHHHHhcCCcccccCCCCCceEEEEecc
Q 037791          153 KSEFDFLYLPMDFR----RRANLGYAFVNFTTAAGALRFWKACNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       153 ~G~YDFlYLPiDf~----t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      +|...-+.++.+..    ++..+|++||.|.+.++|.++++.+||..|.      ++.+.++|+.
T Consensus       153 ~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~------gr~i~~~~~~  211 (222)
T 3dxb_A          153 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA------GRKVVAEVYD  211 (222)
T ss_dssp             TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS------SSBCEEEECC
T ss_pred             cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC------CeEEEEEEcC
Confidence            78888999986654    4488999999999999999999999999885      5678888876

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.85  E-value=0.0023  Score=52.68  Aligned_cols=62  Identities=18%  Similarity=0.170  Sum_probs=54.4

Q ss_pred             CCCccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCC-HHHHHHHHHH
Q 037791          113 LGENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTT-AAGALRFWKA  190 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~s-pedA~~F~~~  190 (295)
                      ...-+-|.|.||+.. .|.++|+++|.+             +|..-|+.+..|-.+      |||-|.+ +.+|.++++.
T Consensus        15 ~~~G~il~v~~l~~~~~sredLke~F~~-------------~G~V~~Vd~~~g~~t------gfVrf~~~~~~A~~av~~   75 (121)
T 1owx_A           15 EKIGCLLKFSGDLDDQTCREDLHILFSN-------------HGEIKWIDFVRGAKE------GIILFKEKAKEALGKAKD   75 (121)
T ss_dssp             CCCCCEEEEEESCCSSCCHHHHHHHTCS-------------SCCEEEEECCTTCSE------EEEEESSCHHHHHHHHHH
T ss_pred             ccCCeEEEEecCCCCcCCHHHHHHHHHh-------------cCCEEEEEEecCCCE------EEEEECCChHHHHHHHHH
Confidence            455678999999999 999999999997             688889988888764      9999999 7999999999


Q ss_pred             hcC
Q 037791          191 CNK  193 (295)
Q Consensus       191 fnG  193 (295)
                      +|.
T Consensus        76 ln~   78 (121)
T 1owx_A           76 ANN   78 (121)
T ss_dssp             TTT
T ss_pred             hhc
Confidence            963

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.82  E-value=0.0037  Score=49.60  Aligned_cols=72  Identities=17%  Similarity=0.151  Sum_probs=54.0

Q ss_pred             EEEEcCCC-----CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          118 TLMIRNIP-----NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       118 TVMIRNIP-----Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ||+|...|     +-++.+...++++....          +|..--+.+..|.        +||.|.+.++|.++++ +|
T Consensus         9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~----------~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mn   69 (91)
T 2dnr_A            9 TVLVSIKSSLPENNFFDDALIDELLQQFAS----------FGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LN   69 (91)
T ss_dssp             EEEEEEECSSTTTCSCCHHHHHHHHHHHHT----------TCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GT
T ss_pred             eEEEEeccCccccccCCHHHHHHHHHHHHh----------CCCeEEEEEecCC--------EEEEECChHHHHHHHh-cC
Confidence            99999887     34565444444444321          6766667777765        8999999999999998 99


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      |....      .+.+.|.+|+.
T Consensus        70 G~~v~------Gr~LkV~lkt~   85 (91)
T 2dnr_A           70 GKELL------NRTITIALKSP   85 (91)
T ss_dssp             TCEET------TEEEEEEECCC
T ss_pred             CeEeC------CeEEEEEeCCC
Confidence            99874      67899998873

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.71  E-value=0.002  Score=52.28  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=58.1

Q ss_pred             CCCccEEEEcCCCCcc-CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          113 LGENTTLMIRNIPNNL-KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~-Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .+.-|||.|.||+..+ +.++|++.|++.-.        .+..-..|-||+-       ....-|||.++++|.++...+
T Consensus         2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~--------~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~L   66 (104)
T 1wey_A            2 SSGSSGLIACVANDDVFSESETRAKFESLFR--------TYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRL   66 (104)
T ss_dssp             CSCCCEEEEECCCGGGGSTTTHHHHHHHHHH--------TTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTS
T ss_pred             CCCCceEEEecCCHHHcCCHHHHHHHHHHHH--------hhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHh
Confidence            4567899999998866 65555444443200        0122334778753       457899999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEecc
Q 037791          192 NKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAr  213 (295)
                      ||..+.      ++.+.|+||.
T Consensus        67 h~~~f~------g~~~r~YFgq   82 (104)
T 1wey_A           67 HKTEFL------GKEMKLYFAQ   82 (104)
T ss_dssp             TTSEET------TEECEEECCC
T ss_pred             ccceec------CceeEEEecC
Confidence            999875      5689999997

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.05  E-value=0.017  Score=46.17  Aligned_cols=70  Identities=10%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             cEEEEcCCCC------ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          117 TTLMIRNIPN------NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       117 TTVMIRNIPN------k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      -||+|..++.      -++.+...++++....          +|+.--+.+..|-        +||.|.+.++|.++++ 
T Consensus        16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~----------~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-   76 (95)
T 1ufw_A           16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS----------YGTIVLVRINQGQ--------MLVTFADSHSALSVLD-   76 (95)
T ss_dssp             CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH----------HSCCSEEEEETTE--------EEEECSCSHHHHHHHH-
T ss_pred             CeEEEEecCCcccccccCCHHHHHHHHHHHHH----------CCCEEEEEEecCc--------EEEEEcChHHHHHHHh-
Confidence            3999999873      3565544445444321          5666666666665        9999999999999998 


Q ss_pred             hcCCcccccCCCCCceEEEEe
Q 037791          191 CNKYKWEVEAPGNKKMCEIAC  211 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsy  211 (295)
                      +||....      .+.+.|.+
T Consensus        77 ldG~~v~------Gr~L~V~~   91 (95)
T 1ufw_A           77 VDGMKVK------GRAVKISG   91 (95)
T ss_dssp             GGGSEET------TEEEEEEC
T ss_pred             cCCeeeC------CeEEEEec
Confidence            9999985      56777765

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=94.77  E-value=0.16  Score=42.10  Aligned_cols=68  Identities=13%  Similarity=0.214  Sum_probs=59.5

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -.||=|=|||.+++...+++++.+.-..        -.|.+--+||.-|.      |=|.|-|.|..+|-++.-.++|..
T Consensus        21 ~rtiaL~~ipDtvndarIr~lve~~~~i--------~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~e   86 (117)
T 2l9w_A           21 ETLICLFPLSDKVSPSLICQFLQEEIHI--------NEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQ   86 (117)
T ss_dssp             TSCEEEECCCTTCCHHHHHHHHHHHTCC--------CTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEE
T ss_pred             CcEEEEecCCCCCCHHHHHHHHhhhhcc--------CccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCee
Confidence            4588899999999999999999984311        14889999999997      579999999999999999999999


Q ss_pred             cc
Q 037791          196 WE  197 (295)
Q Consensus       196 w~  197 (295)
                      ++
T Consensus        87 f~   88 (117)
T 2l9w_A           87 FQ   88 (117)
T ss_dssp             ET
T ss_pred             ec
Confidence            97

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.67  E-value=0.33  Score=39.37  Aligned_cols=62  Identities=13%  Similarity=0.065  Sum_probs=45.1

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEE-EecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFL-YLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFl-YLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      +.....+|.|+|||...+++.|.-.|+...  .|      -.|...-+ |++         +=|.|-|.++++|++-.+.
T Consensus         4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~r--rs------GGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k   66 (104)
T 2dhx_A            4 GSSGGVAVEVRGLPPAVPDELLTLYFENRR--RS------GGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ   66 (104)
T ss_dssp             SCCCCCEEEEESCCTTSCHHHHHHHHHCTT--TT------CCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC
T ss_pred             CccCccEEEEECCCCCCChhHheEEEeCCC--cC------CCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC
Confidence            445678999999999999998888888631  01      14555444 555         4689999999999876554

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=91.28  E-value=0.12  Score=41.53  Aligned_cols=27  Identities=19%  Similarity=0.135  Sum_probs=23.9

Q ss_pred             CCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          167 RRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       167 t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      .+...|||||.|.++++|.++++.+++
T Consensus         9 ~~~~~G~~fV~f~~~~~A~~al~~~~~   35 (158)
T 2kn4_A            9 GKTLKGETTTEAVDAATAEKVFKQYAN   35 (158)
T ss_dssp             CSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             CccccchhHHHHHHHHhHHHHHHhhcc
Confidence            345789999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	3e-04

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 13/82 (15%)

Query: 116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAF 175
           +T L + N+P  +    L  I   +  +          +                 G AF
Sbjct: 6   DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR-------------GVAF 52

Query: 176 VNFTTAAGALRFWKACNKYKWE 197
           V +     A     A N    E
Sbjct: 53  VRYNKREEAQEAISALNNVIPE 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.65
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.6
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.58
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.57
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.57
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.55
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.52
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.51
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.49
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.48
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.47
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.47
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.47
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.46
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.46
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.45
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.45
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.45
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.4
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.4
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.39
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.38
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.38
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.38
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.38
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.37
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.37
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.35
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.35
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.34
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.34
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.32
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.32
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.31
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	99.31
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.31
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.3
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.29
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.29
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.29
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.29
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.28
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.28
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.28
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.27
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.27
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.26
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.25
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.25
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.25
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.25
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.24
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.23
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.2
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.2
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.19
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.19
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.19
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.18
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.17
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.16
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.16
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.15
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.15
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.15
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.13
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.08
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.08
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.08
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.06
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.04
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.02
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.02
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.02
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.01
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.99
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.97
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	98.85
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.84
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	98.81
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.75
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.67
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.61
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.52
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.44
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.4
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	97.63

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-16  Score=115.78  Aligned_cols=81  Identities=22%  Similarity=0.363  Sum_probs=75.5

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .||||+|+|||..+|+++|+++|.+             +|.+..+.|+.|..++.++|||||.|.++++|..+++.+||+
T Consensus         1 s~t~l~V~nLp~~~te~~l~~~f~~-------------~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~   67 (82)
T d1fxla1           1 SKTNLIVNYLPQNMTQEEFRSLFGS-------------IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL   67 (82)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH-------------hCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCC
Confidence            3899999999999999999999998             678889999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccC
Q 037791          195 KWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAri  214 (295)
                      .|.      ++.+.|.||++
T Consensus        68 ~~~------g~~l~v~~AkP   81 (82)
T d1fxla1          68 RLQ------TKTIKVSYARP   81 (82)
T ss_dssp             EET------TEECEEEECCC
T ss_pred             EEC------CEEEEEEEeeC
Confidence            985      56899999985

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.60  E-value=1.2e-15  Score=112.83  Aligned_cols=80  Identities=24%  Similarity=0.411  Sum_probs=74.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .|||.|+|||..+|+++|+++|.+             +|.+..+.|..|..++.++|||||.|.++++|.++++.+||+.
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~   68 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRA-------------IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT   68 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHH-------------hCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCE
Confidence            589999999999999999999998             6888899999999999999999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccC
Q 037791          196 WEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAri  214 (295)
                      |.      ++.+.|.||++
T Consensus        69 ~~------g~~l~v~~a~p   81 (82)
T d1b7fa1          69 VR------NKRLKVSYARP   81 (82)
T ss_dssp             ET------TEECEEEECCC
T ss_pred             EC------CEEEEEEEcCC
Confidence            85      56899999974

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.58  E-value=4.7e-15  Score=110.92  Aligned_cols=81  Identities=21%  Similarity=0.208  Sum_probs=74.5

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..|+|.|.|||..+|+++|+++|.+             +|.+..+.|+.|..++.++|||||.|.++++|.++++.+||.
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~-------------~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~   71 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGK-------------YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV   71 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTS-------------SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHh-------------hCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCC
Confidence            4578999999999999999999987             788999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEec
Q 037791          195 KWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyA  212 (295)
                      .+.    |..+.+.|.||
T Consensus        72 ~~~----g~~~~l~V~~A   85 (85)
T d1b7fa2          72 IPE----GGSQPLSVRLA   85 (85)
T ss_dssp             CCT----TCSSCCEEEEC
T ss_pred             EeC----CCCeEEEEEEC
Confidence            886    34568999998

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=113.56  Aligned_cols=83  Identities=18%  Similarity=0.366  Sum_probs=76.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|+|||..+|+++|.++|..             +|.+..++|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus         5 ~~~~~~i~V~nLp~~~t~~~l~~~f~~-------------~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~   71 (90)
T d2cq0a1           5 ADDNATIRVTNLSEDTRETDLQELFRP-------------FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS   71 (90)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHTTSTT-------------TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHH-------------hcccccccccccccccccccceeEEECCHHHHHHHHHHhC
Confidence            456789999999999999999999987             7889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      |..|.      ++.+.|.||+.
T Consensus        72 g~~~~------g~~i~v~~akp   87 (90)
T d2cq0a1          72 GFGYD------HLILNVEWAKP   87 (90)
T ss_dssp             TCEET------TEECEEEESSC
T ss_pred             CCEEC------CEEEEEEeeeC
Confidence            99985      56899999985

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=5.4e-15  Score=111.65  Aligned_cols=83  Identities=20%  Similarity=0.251  Sum_probs=76.5

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      +.++|.|+|||..+|+++|.++|.+             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+||.
T Consensus         6 ~~~~l~V~nL~~~~t~~~l~~~F~~-------------~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~   72 (88)
T d1rk8a_           6 EGWILFVTSIHEEAQEDEIQEKFCD-------------YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA   72 (88)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHH-------------cCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCC
Confidence            3569999999999999999999987             688889999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .|.      ++.+.|+||..+|
T Consensus        73 ~l~------g~~l~V~~a~~kG   88 (88)
T d1rk8a_          73 EIM------GQTIQVDWCFVKG   88 (88)
T ss_dssp             EET------TEECEEEESEECC
T ss_pred             EEC------CEEEEEEEecCCC
Confidence            885      4689999999877

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.1e-15  Score=110.42  Aligned_cols=83  Identities=16%  Similarity=0.247  Sum_probs=76.7

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ...||+|.|||..+|+++|+++|.+             +|....+.++.|..++.++|||||.|.+.++|.++++.+||.
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~   70 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIP-------------FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES   70 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTT-------------TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhh-------------CCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCC
Confidence            4569999999999999999999997             688889999999999999999999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      ++.+.|.||+.+.
T Consensus        71 ~i~------g~~l~v~~a~p~~   86 (89)
T d2cqba1          71 ELF------GRTIRVNLAKPMR   86 (89)
T ss_dssp             EET------TEEEEEEECCCCC
T ss_pred             EEC------CEEEEEEEeCCCC
Confidence            885      5689999999764

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.5e-14  Score=107.31  Aligned_cols=80  Identities=16%  Similarity=0.237  Sum_probs=73.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .|+|.|.|||..+|+++|+++|.+             +|.+..+.|+.|..++.++|||||.|.++++|.++++.+||..
T Consensus         6 ~~~lfV~nLp~~~te~~L~~~F~~-------------~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~   72 (85)
T d1fxla2           6 DANLYVSGLPKTMTQKELEQLFSQ-------------YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK   72 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHH-------------hCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCE
Confidence            468999999999999999999987             7889999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEec
Q 037791          196 WEVEAPGNKKMCEIACA  212 (295)
Q Consensus       196 w~~~~~gS~KiceVsyA  212 (295)
                      |.    |..+.+.|.||
T Consensus        73 ~~----G~~~~i~V~~A   85 (85)
T d1fxla2          73 PS----GATEPITVKFA   85 (85)
T ss_dssp             CT----TCSSCCEEEEC
T ss_pred             eC----CCCEEEEEEeC
Confidence            86    34567889997

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.4e-14  Score=109.22  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=76.5

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      +..+||+|.|||..+|+++|+++|.+             +|.+-.+.|+.|..|+.++|||||.|.+.++|..+++.+||
T Consensus         7 ~~~~tlfV~nLp~~~t~~~l~~~F~~-------------~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g   73 (93)
T d1x5ua1           7 NQDATVYVGGLDEKVSEPLLWELFLQ-------------AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM   73 (93)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHH-------------hCCccccceeecccccccccceEEEECCHHHHHHHHHHcCC
Confidence            34579999999999999999999987             68888899999999999999999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..|.      ++.+.|.||+...
T Consensus        74 ~~~~------g~~l~V~~A~~~~   90 (93)
T d1x5ua1          74 IKLY------GKPIRVNKASAHN   90 (93)
T ss_dssp             CBCS------SCBCEEEETTTTS
T ss_pred             CEEC------CEEEEEEEcCCCC
Confidence            9986      4578999998764

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=5.1e-14  Score=103.94  Aligned_cols=79  Identities=16%  Similarity=0.193  Sum_probs=65.5

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      +||.|+|||..+|+++|+++|.+             +|.+..+.+..|..++.++|||||.|.++++|.++++.+||..|
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~-------------~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~   68 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQD-------------INVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI   68 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHH-------------TTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred             cEEEEECCCCcCCHHHHHHHHHH-------------hCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEE
Confidence            59999999999999999999998             57777777788888899999999999999999999999999998


Q ss_pred             cccCCCCCceEEEEeccC
Q 037791          197 EVEAPGNKKMCEIACADI  214 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAri  214 (295)
                      .      ++.+.|.||++
T Consensus        69 ~------g~~i~V~~a~P   80 (81)
T d2ghpa1          69 E------GYTLVTKVSNP   80 (81)
T ss_dssp             T------TEECEEEECCC
T ss_pred             C------CEEEEEEEccC
Confidence            5      56899999975

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=6.8e-14  Score=106.88  Aligned_cols=83  Identities=22%  Similarity=0.386  Sum_probs=74.2

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEeccccc-CCcceeeEEEecCCHHHHHHHHHHh-c
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFR-RRANLGYAFVNFTTAAGALRFWKAC-N  192 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~-t~~N~GYAFVNF~spedA~~F~~~f-n  192 (295)
                      ..+||.|+|||..+|+++|+++|..             +|.+..+.|+.|.. ++.++|||||.|.++++|.++++.+ |
T Consensus         7 ~~~~l~V~nLp~~~~e~~l~~~F~~-------------~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~   73 (94)
T d2cpha1           7 TTSKILVRNIPFQANQREIRELFST-------------FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH   73 (94)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHH-------------hCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccC
Confidence            4578999999999999999999997             78899999999965 7899999999999999999999998 8


Q ss_pred             CCcccccCCCCCceEEEEeccCcC
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      |..|.      ++.+.|.||..+-
T Consensus        74 ~~~~~------Gr~l~V~~A~~~~   91 (94)
T d2cpha1          74 STHLY------GRRLVLEWADSEV   91 (94)
T ss_dssp             CCBSS------SCBCEEEECCCCC
T ss_pred             CcEEC------CEEEEEEEcCCCC
Confidence            88875      4578999998663

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=106.98  Aligned_cols=82  Identities=15%  Similarity=0.233  Sum_probs=75.5

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .++|.|.|||..+|+++|+++|.+             +|.+..+.+..|..++.++|||||.|.++++|.++++.+||+.
T Consensus        18 ~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~   84 (102)
T d2cpza1          18 GANLFIYHLPQEFGDQDLLQMFMP-------------FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ   84 (102)
T ss_dssp             TCCEEEESCCSSCCHHHHHHHHGG-------------GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHh-------------hccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCE
Confidence            468999999999999999999998             6888889999999999999999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCcC
Q 037791          196 WEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQG  216 (295)
                      |.      ++.+.|.||+.+-
T Consensus        85 ~~------g~~i~V~~a~~k~   99 (102)
T d2cpza1          85 IG------MKRLKVQLKRSKN   99 (102)
T ss_dssp             ET------TEECEEECCCCSC
T ss_pred             EC------CEEEEEEEeCCCC
Confidence            85      5689999998653

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6e-14  Score=103.90  Aligned_cols=77  Identities=22%  Similarity=0.266  Sum_probs=72.1

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|.|.|||..+|+++|+++|.+             +|.+..+.|+.|..++.++|||||.|.++++|..+++.+||..+.
T Consensus         2 slfV~nL~~~~te~~l~~~F~~-------------~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~   68 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSP-------------AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK   68 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEET
T ss_pred             EEEEeCCCCcCCHHHHHHHHHH-------------hCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEEC
Confidence            7999999999999999999987             678899999999999999999999999999999999999999885


Q ss_pred             ccCCCCCceEEEEecc
Q 037791          198 VEAPGNKKMCEIACAD  213 (295)
Q Consensus       198 ~~~~gS~KiceVsyAr  213 (295)
                            ++.+.|.||+
T Consensus        69 ------gr~i~v~~a~   78 (80)
T d1cvja1          69 ------GKPVRIMWSQ   78 (80)
T ss_dssp             ------TEECEEEECC
T ss_pred             ------CEEEEEEEeC
Confidence                  4689999995

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=105.54  Aligned_cols=83  Identities=13%  Similarity=0.265  Sum_probs=76.0

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+.-+||.|.|||..+|+++|+++|.+             +|.+.-+.|+.|..++.++|||||.|.+.++|..+++.+|
T Consensus         4 ~~~s~tlfV~nlp~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~   70 (93)
T d1h2vz_           4 LKKSCTLYVGNLSFYTTEEQIYELFSK-------------SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN   70 (93)
T ss_dssp             TTTCCEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHH-------------HCCcceeccccccccccccceEEEEECCHHHHHHHHHHhC
Confidence            345679999999999999999999998             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      |..|.      ++.+.|.||+-
T Consensus        71 g~~~~------gr~i~V~~a~~   86 (93)
T d1h2vz_          71 GTRLD------DRIIRTDWDAG   86 (93)
T ss_dssp             TSEET------TEECEEEEESC
T ss_pred             CCEEC------CEEEEEEEcCC
Confidence            99985      46899999964

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.9e-13  Score=104.70  Aligned_cols=84  Identities=19%  Similarity=0.339  Sum_probs=76.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..++|.|.|||..+|+++|+++|.+             +|.+..+.|+.|..++.++|||||.|.+.++|.++++.+|
T Consensus         5 ~~~~~~lfV~nL~~~~t~~~l~~~F~~-------------~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~   71 (99)
T d1whwa_           5 SSGSGRLFVRNLSYTSSEEDLEKLFSA-------------YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD   71 (99)
T ss_dssp             CCSCEEEEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCcCCHHHHHHHHHh-------------cCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcC
Confidence            455778999999999999999999987             6788889999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..|.      .+.+.|.||+.+
T Consensus        72 g~~~~------gr~i~V~~a~~~   88 (99)
T d1whwa_          72 GQVFQ------GRMLHVLPSTIK   88 (99)
T ss_dssp             TEESS------SCEEEEEECCCC
T ss_pred             CCEEC------CEEEEEEECCCC
Confidence            99885      458999999865

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.6e-13  Score=104.44  Aligned_cols=92  Identities=11%  Similarity=0.143  Sum_probs=77.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|.|||..+|+++|+++|.++|....     ........+.++.|..++.++|||||.|.++++|..+++.+|
T Consensus         5 ~~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~-----~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~   79 (101)
T d2cpea1           5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKM-----NKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD   79 (101)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCB-----CSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCcCCHHHHHHHHHHCceEEE-----eeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhC
Confidence            345789999999999999999999998653211     123344678899999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |+.|.      ++.+.|.||+.+
T Consensus        80 g~~~~------gr~i~V~~a~~~   96 (101)
T d2cpea1          80 GKDFQ------GSKLKVSLARKK   96 (101)
T ss_dssp             TCEET------TEECEEECSSCC
T ss_pred             CCEEC------CEEEEEEEcCCC
Confidence            99995      568999999864

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.45  E-value=4.7e-13  Score=107.77  Aligned_cols=84  Identities=20%  Similarity=0.296  Sum_probs=76.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||.|.|||..+|+++|+++|.+             +|.+..+.|..|..|+.++|||||.|.+.++|.++++.+|
T Consensus        39 ~~~~~~l~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~ln  105 (139)
T d1u6fa1          39 PDVLRNLMVNYIPTTVDEVQLRQLFER-------------YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN  105 (139)
T ss_dssp             TTTTSEEEEESCSTTCCHHHHHHHHHH-------------HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHh-------------hccccccccccccccccccceeeEEECCHHHHHHHHHHhC
Confidence            345679999999999999999999998             6889999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |+.+.      ++.+.|.||+..
T Consensus       106 g~~~~------gr~l~V~~a~~~  122 (139)
T d1u6fa1         106 GFNIL------NKRLKVALAASG  122 (139)
T ss_dssp             TEECS------SCEEEEEESSCC
T ss_pred             CCEEC------CEEEEEEEcCCC
Confidence            99985      568999999854

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.5e-14  Score=106.08  Aligned_cols=81  Identities=20%  Similarity=0.246  Sum_probs=75.0

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .|.|.|||..+|+++|+++|.+             +|.+..+.|..|..|+.++|||||.|.++++|..+++.+||+.+.
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~-------------~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~   69 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTS-------------FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG   69 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTS-------------SSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHh-------------cCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEEC
Confidence            5899999999999999999987             788999999999999999999999999999999999999999986


Q ss_pred             ccCCCCCceEEEEeccCcCh
Q 037791          198 VEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       198 ~~~~gS~KiceVsyAriQGk  217 (295)
                            ++.+.|.||..+.+
T Consensus        70 ------g~~l~V~~A~~~~~   83 (85)
T d2u2fa_          70 ------DKKLLVQRASVGAK   83 (85)
T ss_dssp             ------SSCCEEEECCCCCC
T ss_pred             ------CEEEEEEECCCCCC
Confidence                  45799999987764

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-13  Score=104.77  Aligned_cols=84  Identities=17%  Similarity=0.249  Sum_probs=76.1

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      .||.|+|||..+|+++|+++|.+             +|.+..+.|+.|..|+.++|||||.|.+.++|..+++.+||..+
T Consensus         9 rtl~V~nLp~~~te~~l~~~f~~-------------~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~   75 (104)
T d1p1ta_           9 RSVFVGNIPYEATEEQLKDIFSE-------------VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF   75 (104)
T ss_dssp             SCEEEESCCTTSCHHHHHHHHHT-------------TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC
T ss_pred             CEEEEECCCCcCCHHHHHHhhhc-------------cccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEE
Confidence            37999999999999999999987             78899999999999999999999999999999999999999988


Q ss_pred             cccCCCCCceEEEEeccCcChHH
Q 037791          197 EVEAPGNKKMCEIACADIQGRDA  219 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQGk~a  219 (295)
                      .      ++.+.|.||..+....
T Consensus        76 ~------g~~i~V~~a~~~~~~~   92 (104)
T d1p1ta_          76 S------GRALRVDNAASEKNKE   92 (104)
T ss_dssp             S------SSCBEEEETTCTTHHH
T ss_pred             C------CEEEEEEECCCCCCcc
Confidence            5      4578999998776543

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.4e-13  Score=98.49  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=67.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..+||+|.|||..+|+++|+++|.+             +|.+..+.|+.|..++.++|||||.|.+.++|..+++.+|
T Consensus         6 p~~~~~l~V~nL~~~~te~~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~   72 (83)
T d2cqca1           6 PDPNCCLGVFGLSLYTTERDLREVFSK-------------YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN   72 (83)
T ss_dssp             CCGGGCEEEESCCSSCCHHHHHHHHHT-------------TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHH-------------hCCCccccccccccccccccceEEEECCHHHHHHHHHHcC
Confidence            455789999999999999999999998             7888889999999999999999999999999999999999


Q ss_pred             CCccc
Q 037791          193 KYKWE  197 (295)
Q Consensus       193 G~~w~  197 (295)
                      |..|.
T Consensus        73 g~~~~   77 (83)
T d2cqca1          73 GMELD   77 (83)
T ss_dssp             TEEET
T ss_pred             CCEEC
Confidence            99986

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=3.1e-13  Score=104.17  Aligned_cols=77  Identities=16%  Similarity=0.169  Sum_probs=67.7

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..|||.|+|||..+|+++|+++|..             +|.+..+.|+-      +.|||||.|.+.++|.++++.+||.
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~-------------fG~I~~v~l~~------~kg~afV~f~~~~~A~~A~~~lng~   69 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSR-------------FGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS   69 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhc-------------cCCccEEEeec------cCceEEEEEcCHHHHHHHHHHHcCC
Confidence            4689999999999999999999987             68888888753      4699999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .|.      ++.+.|.||..+-
T Consensus        70 ~~~------gr~l~v~~a~~~~   85 (111)
T d1whxa_          70 KFH------HVPLYLEWAPIGV   85 (111)
T ss_dssp             BSS------SSBCEEEEEETTT
T ss_pred             ccC------CCeEEEEECCCCc
Confidence            996      4588999997653

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-13  Score=101.66  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=72.0

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      +..+||.|.|||..+|+++|+++|.+             +|.+..+-|..|..+  +.|||||.|.+.++|.++++.+||
T Consensus         6 s~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~~~i~~~~~~--~kg~afV~f~~~~~A~~Ai~~l~g   70 (89)
T d1cvja2           6 SGVGNIFIKNLDKSIDNKALYDTFSA-------------FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNG   70 (89)
T ss_dssp             TTTTEEEEESCCSSCCHHHHHHHHHT-------------TSCEEEEEECCBTTB--CCSCEEEEESCHHHHHHHTTSSSE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHh-------------cCCceEEEEEeecCC--CcceeEEEECCHHHHHHHHHHcCC
Confidence            34668999999999999999999987             678888888888643  689999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..|.      ++.+.|.||+.+.
T Consensus        71 ~~~~------g~~i~V~~a~~~~   87 (89)
T d1cvja2          71 MLLN------DRKVFVGRFKSRK   87 (89)
T ss_dssp             EEET------TEEEEEEECCCTT
T ss_pred             CEEC------CEEEEEEECCCCC
Confidence            9985      5689999998653

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=3.6e-13  Score=100.07  Aligned_cols=79  Identities=13%  Similarity=0.208  Sum_probs=70.6

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCC---cceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRR---ANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~---~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      |.|+|||..+|+++|+++|..             +|.+..+.|+.|..++   .++|||||.|.++++|.++++.+||+.
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~-------------~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~   67 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSK-------------VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT   67 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred             CEEcCCCCCCCHHHHHHHHHH-------------hCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCE
Confidence            689999999999999999987             7899999999997765   358999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCcC
Q 037791          196 WEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQG  216 (295)
                      |.      ++.+.|.||+-+.
T Consensus        68 ~~------g~~i~V~~a~~~~   82 (85)
T d2cpfa1          68 VD------GHKLEVRISERAT   82 (85)
T ss_dssp             ET------TEECEEECSSCSS
T ss_pred             EC------CEEEEEEECCCCC
Confidence            85      5689999997543

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.3e-12  Score=98.67  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=74.3

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .++.+||.|.|||.+.|+++|+++|.+             +|..--+.+..|..++.++|||||.|.++++|.++++.+|
T Consensus         5 ~~~~~tlfV~nLp~~~te~~l~~~f~~-------------~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~   71 (98)
T d1x4ha1           5 VTEGKTVFIRNLSFDSEEEALGEVLQQ-------------FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS   71 (98)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCCCEEEEcCCCCcCCHHHHHHHHhc-------------cccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcc
Confidence            445568999999999999999999998             5677778888899999999999999999999999999998


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      +..+.......++.+.|.||..
T Consensus        72 ~~~~~~g~~~~gr~l~v~~a~~   93 (98)
T d1x4ha1          72 LEAEGGGLKLDGRQLKVDLAVT   93 (98)
T ss_dssp             TTTTTCCEESSSCEEEEECCCC
T ss_pred             cccccCCcEECCEEEEEEECCC
Confidence            7655422112467899999974

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.9e-13  Score=104.44  Aligned_cols=81  Identities=21%  Similarity=0.264  Sum_probs=70.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||+|.|||..+|+++|+++|..+             |.+..+.+..|..++.+.|||||.|.+.++|.++++.+||..
T Consensus        18 s~tl~V~nLp~~~t~~~l~~~f~~~-------------G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~   84 (102)
T d2cpxa1          18 NKVLYLKNLSPRVTERDLVSLFARF-------------QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYK   84 (102)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHTHHH-------------HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCB
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhc-------------cceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCE
Confidence            5689999999999999999999985             444455666777889999999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      |.      ++.+.|.||+.+
T Consensus        85 ~~------g~~l~V~~ak~k   98 (102)
T d2cpxa1          85 LY------GKILVIEFGKNK   98 (102)
T ss_dssp             CS------SCBCEEEECCCC
T ss_pred             EC------CEEEEEEeCCCc
Confidence            84      568999999864

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-12  Score=99.29  Aligned_cols=84  Identities=20%  Similarity=0.224  Sum_probs=74.0

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      .....++|.|.|||..+|+++|+++|..             +|.+..+.|..|..+  ++|||||.|.++++|.++++.+
T Consensus         7 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~-------------~G~v~~v~~~~~~~~--~kg~afV~f~~~~~a~~Ai~~l   71 (93)
T d2cq3a1           7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQ-------------FGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKL   71 (93)
T ss_dssp             CSCCCCEEEEESCCTTCCHHHHHHHGGG-------------TSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHhh-------------cceeeeccccccccC--CcceeEEEECCHHHHHHHHHHc
Confidence            3455778999999999999999999988             678888999888654  6899999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEeccCcC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ||..|.      ++.+.|.||+...
T Consensus        72 ~~~~~~------g~~l~V~~A~~r~   90 (93)
T d2cq3a1          72 HGTVVE------GRKIEVNNATARV   90 (93)
T ss_dssp             TTCEET------TEECEEEECCSSC
T ss_pred             CCCEEC------CEEEEEEecCcCC
Confidence            999985      5689999998754

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=99.46  Aligned_cols=83  Identities=14%  Similarity=0.323  Sum_probs=72.4

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      +...-++|.|+|||..+|+++|+++|..             +|.+..+.|+.|..++.++|||||.|.++++|.++++. 
T Consensus         4 ~~~~~~~lfV~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~-   69 (90)
T d2cqga1           4 AVQKTSDLIVLGLPWKTTEQDLKEYFST-------------FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-   69 (90)
T ss_dssp             CCCCCCCEEEESCCSSCCHHHHHHHHGG-------------GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-
T ss_pred             CCcCCCeEEEECCCCCCCHHHHHHHHHh-------------hcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhc-
Confidence            3455689999999999999999999997             78899999999999999999999999999999999874 


Q ss_pred             cCCcccccCCCCCceEEEEeccCc
Q 037791          192 NKYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAriQ  215 (295)
                       ++.+      .++.+.|.||..+
T Consensus        70 -~~~l------~Gr~i~v~~a~~k   86 (90)
T d2cqga1          70 -RHMI------DGRWCDCKLPNSK   86 (90)
T ss_dssp             -CEEE------TTEEEEEECCCTT
T ss_pred             -CCcc------CCEEeEEEeCCCC
Confidence             3333      3578999999764

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.2e-13  Score=97.72  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=68.8

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCc-cEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEF-DFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~Y-DFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      |.|.|||..+|+++|.++|.+             +|.+ +-..++.|..++.+.|||||.|.++++|.++++.+||..+.
T Consensus         1 lfV~nLp~~~te~~l~~~F~~-------------~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~   67 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSA-------------FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC   67 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHT-------------TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred             CEEcCCCCcCcHHHHHHHHHH-------------hCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEEC
Confidence            689999999999999999998             4555 44568889999999999999999999999999999999885


Q ss_pred             ccCCCCCceEEEEeccCc
Q 037791          198 VEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       198 ~~~~gS~KiceVsyAriQ  215 (295)
                            ++.+.|.||...
T Consensus        68 ------gr~l~v~~a~~k   79 (83)
T d1x5ta1          68 ------NRPITVSYAFKK   79 (83)
T ss_dssp             ------TEECEEEESCCC
T ss_pred             ------CEEEEEEEecCC
Confidence                  457999999753

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.8e-12  Score=97.19  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|.|.|||..+|+++|+++|.+             +|.+.-+.+..+..++.+.|||||.|.++++|.++++.+||+.|.
T Consensus         7 kifV~nLp~~~t~~~l~~~F~~-------------~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~   73 (90)
T d1x5sa1           7 KLFVGGLSFDTNEQSLEQVFSK-------------YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD   73 (90)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHH-------------HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred             EEEEECCCCcCCHHHHHHhhhc-------------cccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEEC
Confidence            5999999999999999999998             677888899999999999999999999999999999999999885


Q ss_pred             ccCCCCCceEEEEeccC
Q 037791          198 VEAPGNKKMCEIACADI  214 (295)
Q Consensus       198 ~~~~gS~KiceVsyAri  214 (295)
                            ++.+.|.||..
T Consensus        74 ------g~~l~V~~a~~   84 (90)
T d1x5sa1          74 ------GRQIRVDQAGK   84 (90)
T ss_dssp             ------SCCCEEEEEEC
T ss_pred             ------CEEEEEEEcCC
Confidence                  45788999864

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.9e-12  Score=96.61  Aligned_cols=79  Identities=18%  Similarity=0.172  Sum_probs=70.2

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||.|.|||..+|+++|+++|..             +|.+..+.|+.|..++  .|||||.|.+.++|..+++.+||..
T Consensus         8 ~~tl~V~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~d~~~~--~~~afV~f~~~~~A~~A~~~l~~~~   72 (90)
T d2cqia1           8 PRTLYVGNLSRDVTEVLILQLFSQ-------------IGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRK   72 (90)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHH-------------HSCEEEEEEECCCCSS--CCEEEEEESSHHHHHHHHHHHTTEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHh-------------cCCceeeeeecccCcc--ceeeEEEECCHHHHHHHHHHcCCCE
Confidence            458999999999999999999987             5778888888886654  7999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      |.      ++.+.|.||+..
T Consensus        73 ~~------g~~i~v~~a~~~   86 (90)
T d2cqia1          73 IL------GKEVKVNWATTP   86 (90)
T ss_dssp             ET------TEEEEEEECCCT
T ss_pred             EC------CEEEEEEEcCCC
Confidence            85      458999999754

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-12  Score=101.33  Aligned_cols=82  Identities=17%  Similarity=0.228  Sum_probs=72.7

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..|+|.|.|||..+|+++|+++|.+             +|.+.-+.|+.|..++.++|||||.|.+.++|.++++.+|+ 
T Consensus         9 ~~~~lfV~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-   74 (103)
T d2cqda1           9 TFTKIFVGGLPYHTTDASLRKYFEG-------------FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-   74 (103)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHT-------------TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-
T ss_pred             CCcEEEEeCCCCcCcHHHHHHHHhh-------------cccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC-
Confidence            4678999999999999999999987             78899999999999999999999999999999999998876 


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      ++.+.|.||....
T Consensus        75 ~l~------Gr~l~V~~a~~~~   90 (103)
T d2cqda1          75 IID------GRKANVNLAYLGA   90 (103)
T ss_dssp             EET------TEECEEEESTTTC
T ss_pred             cCC------CEEEEEEEcCCCC
Confidence            443      4578899987543

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-12  Score=102.19  Aligned_cols=80  Identities=14%  Similarity=0.128  Sum_probs=72.6

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .++|.|+|||..+|+++|+++|.+             +|.+.-++|+.|..++.+.|||||.|.+.++|..+++ ++|+.
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~-------------~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~~~   85 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQ-------------WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHS   85 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTS-------------SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCSEE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHh-------------hCcccceeecccccCCCccCeEEEEECCHHHHHHHHH-hCCCe
Confidence            468999999999999999999998             7899999999999999999999999999999999885 68887


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.      ++.+.|.+|...
T Consensus        86 l~------G~~i~V~~a~~k   99 (103)
T d1x4ba1          86 ID------GRVVEPKRAVAR   99 (103)
T ss_dssp             ET------TEEEEEECCSSC
T ss_pred             EC------CEEEEEEECccc
Confidence            74      568999998753

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3.3e-12  Score=94.11  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=69.2

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .|.|+|||..+|+++|+++|.+             +|.+..+.|+.|. ++.+.|||||.|.++++|.++++.+||+.+.
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~-------------~G~v~~~~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~   67 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAE-------------FGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD   67 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHH-------------HSCEEEEEESCSS-CCCSCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred             EEEEECCCCCCCHHHHHHHHHH-------------hCCCeEEEEEEee-ccccceeEEEEECCHHHHHHHHHHhCCCEEC
Confidence            4899999999999999999998             6788899999985 7888999999999999999999999999885


Q ss_pred             ccCCCCCceEEEEecc
Q 037791          198 VEAPGNKKMCEIACAD  213 (295)
Q Consensus       198 ~~~~gS~KiceVsyAr  213 (295)
                            ++.+.|.+|.
T Consensus        68 ------g~~l~V~~a~   77 (78)
T d1no8a_          68 ------GRPMNIQLVT   77 (78)
T ss_dssp             ------TEECEEEEEC
T ss_pred             ------CEEEEEEEee
Confidence                  5688999985

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=1.5e-12  Score=97.62  Aligned_cols=81  Identities=21%  Similarity=0.261  Sum_probs=67.6

Q ss_pred             CccEEEEcCCCCccCH-HHHHHHHhhhchhhhhcccCccCCCccEEEecccc-cCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          115 ENTTLMIRNIPNNLKR-RDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDF-RRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq-~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf-~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ++.||+|+|||.++|. ++|.++|..             +|.+..+.|+++. .++.+.|||||.|.+.++|..+++ +|
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~-------------~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n   68 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEG-------------FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MN   68 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGG-------------GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GT
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHh-------------hhhccceeeecccCCccccceeeeEEECCHHHHHHHHh-cC
Confidence            3669999999999864 569999987             7889999998864 578899999999999999999996 99


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |+.|.      ++.+.|.||..+
T Consensus        69 ~~~~~------gr~l~V~~a~~k   85 (86)
T d2ghpa3          69 RSLLG------NREISVSLADKK   85 (86)
T ss_dssp             TEEET------TEEEEEEECCCC
T ss_pred             CCEEC------CEEEEEEEcCCC
Confidence            99985      568999999753

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.1e-12  Score=100.22  Aligned_cols=78  Identities=13%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||+|.|||..+|+++|+++|..             +|.+.-+.|+.|..++.++|||||.|.++++|..+++ +||..
T Consensus        18 ~~tifV~nL~~~~te~~l~~~F~~-------------~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g~~   83 (101)
T d2cq4a1          18 ARTVFCMQLAARIRPRDLEDFFSA-------------VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQR   83 (101)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTT-------------TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTTEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHcC-------------CCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHH-HCCCE
Confidence            458999999999999999999997             7889999999999999999999999999999999985 99999


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      |.      ++.+.|.+|.
T Consensus        84 ~~------G~~l~V~~a~   95 (101)
T d2cq4a1          84 LL------GVPIIVQASQ   95 (101)
T ss_dssp             ET------TEEEEEEEHH
T ss_pred             EC------CEEEEEEECC
Confidence            85      4688999884

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.5e-12  Score=100.44  Aligned_cols=87  Identities=20%  Similarity=0.338  Sum_probs=75.2

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEE-ecccccCCcc-eeeEEEecCCHHHHHHHHHHhcCC
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLY-LPMDFRRRAN-LGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlY-LPiDf~t~~N-~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      |.|.||+||+.+|++++.+.|+.             .+++||+| .+-|...+-+ ...|||||.+.+++..|.+.|+|+
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~-------------~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~   68 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQP-------------MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY   68 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCS-------------CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred             ceEEEecCCCCCCHHHHHHHhCC-------------cCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence            89999999999999999999985             78899986 5555554433 399999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcCh
Q 037791          195 KWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      .+.+.. |..-.+.|+||..|..
T Consensus        69 ~F~D~~-g~~~~a~VE~AP~qkv   90 (91)
T d1uw4a_          69 VFLDNK-GQEYPAIVEFAPFQKA   90 (91)
T ss_dssp             EEECTT-CCEEECEEEECSSCCC
T ss_pred             EEEcCC-CCEeeeEEEEcCcccc
Confidence            999876 5666899999999963

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=98.05  Aligned_cols=76  Identities=13%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||+|+|||.++|+++|+++|.+             +|.       .+...+.+.|||||.|.++++|..+++.+||
T Consensus         3 s~s~~i~V~nLp~~~t~~~l~~lF~~-------------~G~-------~~~~~~~~kg~afV~f~~~~~A~~Ai~~ln~   62 (88)
T d1wg1a_           3 SGSSGILVKNLPQDSNCQEVHDLLKD-------------YDL-------KYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQ   62 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCS-------------SCC-------CCEEEEGGGTEEEECCSCHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCccChHHHHHHHHh-------------cCc-------eeeeeeccCCceEEEECCHHHHHHHHHHhCC
Confidence            34689999999999999999999987             341       1222355789999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.+.      .+.+.|.||+.+
T Consensus        63 ~~~~------G~~l~V~~a~~~   78 (88)
T d1wg1a_          63 YSFR------GKDLIVQLQPTD   78 (88)
T ss_dssp             EEET------TEEEEEEECCCC
T ss_pred             CEEC------CEEEEEEEcCCC
Confidence            9985      668999999754

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.5e-12  Score=93.93  Aligned_cols=77  Identities=18%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -+||.|+|||..+|+++|+++|..             +|....+.+      +.+.|||||.|.+.++|..+++.+||..
T Consensus         8 ~k~l~V~nLp~~~te~~l~~~F~~-------------~g~i~~~~~------~~~rg~afV~f~~~~~A~~Ai~~l~~~~   68 (86)
T d2cpda1           8 VKILYVRNLMLSTSEEMIEKEFNN-------------IKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNGKV   68 (86)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHT-------------TSTTCEEEE------EECSSEEEEEESSHHHHHHHHHHHSSEE
T ss_pred             CCEEEEcCCCCCCCHHHHHHhhcc-------------cceeeeEEE------ccccEEEEEEeCCHHHHHHHHHHcCCCE
Confidence            468999999999999999999988             455555544      3467999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCcCh
Q 037791          196 WEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQGk  217 (295)
                      +.      ++.+.|.||+++-+
T Consensus        69 i~------g~~i~V~~akP~~~   84 (86)
T d2cpda1          69 LD------GSPIEVTLAKPVDK   84 (86)
T ss_dssp             ET------TEEEEEECCCCCCC
T ss_pred             EC------CEEEEEEeccCCCC
Confidence            85      56899999998754

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=4.4e-12  Score=91.48  Aligned_cols=74  Identities=19%  Similarity=0.252  Sum_probs=67.9

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEV  198 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~  198 (295)
                      |.|.|||..+|+++|+++|.+             +|.+..+.++.|..++.+.|||||.|.+.++|..+++ +||+.+. 
T Consensus         2 lfV~nLp~~~te~~l~~~F~~-------------~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~-   66 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQ-------------FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN-   66 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHT-------------TSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBT-
T ss_pred             EEEeCCCCCCCHHHHHHHHHH-------------hCCcceeeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEEC-
Confidence            789999999999999999998             7889999999999999999999999999999999986 9999985 


Q ss_pred             cCCCCCceEEEEec
Q 037791          199 EAPGNKKMCEIACA  212 (295)
Q Consensus       199 ~~~gS~KiceVsyA  212 (295)
                           ++.++|.+|
T Consensus        67 -----gr~i~V~~A   75 (75)
T d2msta_          67 -----NKMVECKKA   75 (75)
T ss_dssp             -----TBCCEEEEC
T ss_pred             -----CeEEEEEEC
Confidence                 457888876

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.9e-12  Score=95.28  Aligned_cols=82  Identities=13%  Similarity=0.062  Sum_probs=65.5

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      +....|+|+|+|||.++|+++|+++|..++.            -.+.+.+ .+..++.++|||||.|.+.++|.++++.+
T Consensus         5 g~p~~~~l~v~nLp~~~~~~di~~~F~~~~~------------~~~~~~~-~~~~~g~~~G~afV~f~~~e~a~~Ai~~l   71 (86)
T d2cqpa1           5 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQV------------IPGSVCL-KYNEKGMPTGEAMVAFESRDEATAAVIDL   71 (86)
T ss_dssp             CCCSSEEEEEESCCTTCCHHHHHHHTTTSCC------------CTTTCEE-EECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHhhccc------------ceeEEEE-EeCCCCCcceEEEEEEcCcHHHHHHHHHc
Confidence            4455789999999999999999999998542            1122333 33467899999999999999999999999


Q ss_pred             cCCcccccCCCCCceEEEEec
Q 037791          192 NKYKWEVEAPGNKKMCEIACA  212 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyA  212 (295)
                      ||+.+.      .+.++|++|
T Consensus        72 ~~~~l~------gr~i~v~l~   86 (86)
T d2cqpa1          72 NDRPIG------SRKVKLVLG   86 (86)
T ss_dssp             TTCEET------TEECEEEES
T ss_pred             CCCEEC------CEEEEEEEC
Confidence            999985      446777765

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.4e-12  Score=95.26  Aligned_cols=75  Identities=16%  Similarity=0.214  Sum_probs=67.7

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|.|+|||..+|+++|+++|.+             +|.+..+.|+.|..|+.++|||||.|.+.++|.++++ .||+.+.
T Consensus         2 klfV~nLp~~~te~~l~~~F~~-------------~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i~   67 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQ-------------FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELD   67 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTT-------------TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCCS
T ss_pred             EEEEeCCCCcCCHHHHHHHHHH-------------hCCcceeeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCEEC
Confidence            6899999999999999999987             7889999999999999999999999999999999997 6999885


Q ss_pred             ccCCCCCceEEEEec
Q 037791          198 VEAPGNKKMCEIACA  212 (295)
Q Consensus       198 ~~~~gS~KiceVsyA  212 (295)
                            ++.++|.+|
T Consensus        68 ------Gr~i~V~~A   76 (77)
T d1uawa_          68 ------SKTIDPKVA   76 (77)
T ss_dssp             ------SCCCEEEEC
T ss_pred             ------CeEEEEEEC
Confidence                  456777766

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.8e-12  Score=94.27  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=70.7

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ...+|.|.|||..+|+++|.++|..             +|....+.|+.|..++.++|||||.|.++++|.++++ .+|+
T Consensus         5 ~~~~lfV~nlp~~~te~~l~~~F~~-------------~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~   70 (84)
T d1l3ka1           5 QLRKLFIGGLSFETTDESLRSHFEQ-------------WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPH   70 (84)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSC
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHh-------------hccccceeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCC
Confidence            3468999999999999999999987             7899999999999999999999999999999999987 5888


Q ss_pred             cccccCCCCCceEEEEecc
Q 037791          195 KWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAr  213 (295)
                      .+.      ++.+.|..|.
T Consensus        71 ~i~------Gr~i~V~~A~   83 (84)
T d1l3ka1          71 KVD------GRVVEPKRAV   83 (84)
T ss_dssp             EET------TEECEEEECC
T ss_pred             EEC------CEEEEEEeee
Confidence            774      5678888774

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.4e-12  Score=96.41  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=70.3

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCC-CccEEEeccccc-CCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKS-EFDFLYLPMDFR-RRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G-~YDFlYLPiDf~-t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      +.|.|.|||..+|+++|+++|.++             | .+.-+.|+.|.. ++.++|||||.|.++++|.++++.+++.
T Consensus         2 ~rLyV~nLp~~~te~~l~~~f~~~-------------g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~   68 (96)
T d2disa1           2 CRLFIGGIPKMKKREEILEEIAKV-------------TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPG   68 (96)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHH-------------STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTC
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHh-------------CCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCC
Confidence            579999999999999999999984             4 367788888865 5789999999999999999999999887


Q ss_pred             cccccCCCCCceEEEEeccCc
Q 037791          195 KWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQ  215 (295)
                      .+.-    .++.+.|.||+..
T Consensus        69 ~~~~----~g~~i~V~~A~p~   85 (96)
T d2disa1          69 RIQL----WGHQIAVDWAEPE   85 (96)
T ss_dssp             CSCB----TTBCCEEEESCSS
T ss_pred             CeEE----CCEEEEEEEcCCC
Confidence            7642    2467899999864

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.28  E-value=1.8e-12  Score=98.59  Aligned_cols=81  Identities=16%  Similarity=0.128  Sum_probs=66.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....+||.|+|||..+|+++|+++|.+++.             +..+.| +|..++.++|||||.|.+.++|.++++ +|
T Consensus        10 ~~~~~~ifV~nL~~~~te~~l~~~F~~~G~-------------i~~~~v-~~~~~g~~kg~afv~F~~~e~a~~Al~-~~   74 (91)
T d1fjeb1          10 STTPFNLFIGNLNPNKSVAELKVAISELFA-------------KNDLAV-VDVRTGTNRKFGYVDFESAEDLEKALE-LT   74 (91)
T ss_dssp             CSSSEEEEEECCCTTSCHHHHHHHHHHHHH-------------HHTCCC-CEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred             CCCCcEEEEeCccCcchHHHHHHHHhcCCc-------------EEEeee-eecCCCCccEEeEEeeCCHHHHHHHHh-cC
Confidence            344569999999999999999999998543             333344 355678899999999999999999996 99


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      |+.+.      ++.+.|.||+-
T Consensus        75 g~~~~------g~~i~V~~ak~   90 (91)
T d1fjeb1          75 GLKVF------GNEIKLEKPKG   90 (91)
T ss_dssp             GEEET------TEEEEEECCCC
T ss_pred             CcEEC------CEEEEEEecCC
Confidence            99985      56899999973

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.5e-12  Score=94.55  Aligned_cols=80  Identities=14%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      +..+||.|.|||..+|+++|+++|..             +|.+..+.+..+   ..+.|||||.|.+.++|..+++.+||
T Consensus        12 ~~~~~l~V~nLp~~~t~~~l~~~F~~-------------~G~v~~~~~~~~---~~~~g~afV~f~~~e~a~~Ai~~l~g   75 (95)
T d1x4aa1          12 NNDCRIYVGNLPPDIRTKDIEDVFYK-------------YGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDG   75 (95)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhc-------------CCceEEEEeccc---ccccceEEEEECCHHHHHHHHHHhCC
Confidence            44568999999999999999999997             577777777654   34679999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCc
Q 037791          194 YKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.+.      .+.+.|.||+..
T Consensus        76 ~~~~------g~~l~V~~a~~~   91 (95)
T d1x4aa1          76 YDYD------GYRLRVEFPRSG   91 (95)
T ss_dssp             CEET------TEECEEECCCCC
T ss_pred             CEEC------CEEEEEEeccCC
Confidence            9985      457899999854

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.27  E-value=7.4e-12  Score=92.99  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=64.2

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .+||.|+|||..+|+++|.++|..             +|.+..+.+..+     +.|||||.|.+.++|.++++.+||..
T Consensus         8 ~~tl~V~nLp~~~t~~~l~~~f~~-------------~G~i~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~   69 (83)
T d2b0ga1           8 NQILFLTNLPEETNEMMLSMLFNQ-------------FPGFKEVRLVPN-----RHDIAFVEFTTELQSNAAKEALQGFK   69 (83)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTT-------------STTEEEEEECTT-----TCSCEEEEESSHHHHHHHHHHHTTCB
T ss_pred             CCEEEEECCCCCCCHHHHHhhhcc-------------CccEEEeeeecc-----cceeEEEecCCHHHHHHHHHHhCCcE
Confidence            468999999999999999999987             677777766443     36899999999999999999999998


Q ss_pred             ccccCCCCCceEEEEecc
Q 037791          196 WEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAr  213 (295)
                      +..     ++.+.|+||+
T Consensus        70 ~~~-----~~~i~v~~ak   82 (83)
T d2b0ga1          70 ITP-----THAMKITFAK   82 (83)
T ss_dssp             SST-----TCBCEEEECC
T ss_pred             eCC-----CcEEEEEEec
Confidence            852     3468999997

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.3e-12  Score=97.31  Aligned_cols=78  Identities=17%  Similarity=0.162  Sum_probs=68.7

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....|||.|.|||..+|+++|+++|.+             +|.+..+.+..|      +|||||.|.+.++|..+++.+|
T Consensus        15 ~~~~~~l~v~nL~~~~te~~L~~~F~~-------------fG~i~~v~i~~~------kg~afV~f~~~~~A~~Ai~~l~   75 (96)
T d1x4ga1          15 SPKNCTVYCGGIASGLTDQLMRQTFSP-------------FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVN   75 (96)
T ss_dssp             CSSCCEEEEECCSSCCCHHHHHHHHHH-------------HSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHH-------------hCCceEEEEEec------ceEEEEEECCHHHHHHHHHHhC
Confidence            344689999999999999999999998             678888888766      6999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |..+.      ++.+.|+||+.+
T Consensus        76 ~~~i~------g~~l~v~~ak~~   92 (96)
T d1x4ga1          76 GTTIE------GHVVKCYWGKES   92 (96)
T ss_dssp             TCEET------TEECEEECCCCC
T ss_pred             CCEEC------CEEEEEEEcCCC
Confidence            99875      568999999864

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.26  E-value=9.3e-12  Score=94.76  Aligned_cols=79  Identities=15%  Similarity=0.262  Sum_probs=67.1

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ...+||.|+|||..+|+++|+++|.++             |..     .++..++.+.|||||.|.+.++|.++++.+||
T Consensus        14 ~~~~~l~V~nL~~~~te~~l~~~F~~~-------------g~v-----~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~   75 (96)
T d1fjca_          14 RAARTLLAKNLSFNITEDELKEVFEDA-------------LEI-----RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG   75 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSE-------------EEE-----CCEEETTEEEEEEEEEESSHHHHHHHHHHTTE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhc-------------ccc-----eeeeecCccccEEEEEeCCHHHHHHHHHHcCC
Confidence            345689999999999999999999873             332     23345778899999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      ..|.      ++.+.|.||..++
T Consensus        76 ~~~~------gr~i~V~~a~~k~   92 (96)
T d1fjca_          76 AEID------GRSVSLYYTGEKG   92 (96)
T ss_dssp             EEET------TEEEEEEECSSSC
T ss_pred             CEEC------CEEEEEEEeCCCC
Confidence            9995      5689999999876

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.3e-11  Score=95.83  Aligned_cols=78  Identities=14%  Similarity=0.185  Sum_probs=68.3

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..+||.|+|||..+|.++|.++|..             +|.+..+.++.|-   .+.|||||.|.+.++|..+++.+||+
T Consensus         6 ~~r~l~V~nLp~~~te~~l~~~F~~-------------~G~v~~i~~~~~~---~~kG~afV~f~~~~~A~~Ai~~l~g~   69 (114)
T d2f9da1           6 VNRILYIRNLPYKITAEEMYDIFGK-------------YGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNACDHLSGF   69 (114)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHT-------------TSCEEEEEEECST---TTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhh-------------cCCeEeecccccC---CcCCeEEEEECCHHHHHHHHHHhCCC
Confidence            3569999999999999999999998             6788888887654   45799999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccC
Q 037791          195 KWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAri  214 (295)
                      .+.      ++.+.|.||..
T Consensus        70 ~~~------gr~l~V~~a~~   83 (114)
T d2f9da1          70 NVC------NRYLVVLYYNA   83 (114)
T ss_dssp             EET------TEECEEEECCH
T ss_pred             EEC------CEEEEEEEcCC
Confidence            985      56899999864

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.6e-12  Score=91.62  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=66.0

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEV  198 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~  198 (295)
                      |.|.|||..+|+++|.++|.+             +|.+..+.|+.|..++.+.|||||.|.++++|.++++ ++++.+. 
T Consensus         2 lfV~nl~~~~te~~l~~~F~~-------------~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l~-   66 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSK-------------FGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLN-   66 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHT-------------TSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCBT-
T ss_pred             EEEeCCCCcCCHHHHHHHHHh-------------hccccccccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEEC-
Confidence            789999999999999999997             7899999999999999999999999999999999997 6888774 


Q ss_pred             cCCCCCceEEEEec
Q 037791          199 EAPGNKKMCEIACA  212 (295)
Q Consensus       199 ~~~gS~KiceVsyA  212 (295)
                           ++.++|..|
T Consensus        67 -----Gr~i~V~rA   75 (75)
T d1hd0a_          67 -----GKVIDPKRA   75 (75)
T ss_dssp             -----TBCCEECCC
T ss_pred             -----CCEEEeeEC
Confidence                 345666544

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.2e-12  Score=96.48  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=65.0

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEeccc-ccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMD-FRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiD-f~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      -+||.|.|||..+|+++|+++|..             +|-.+ +.+.++ ..++.++|||||.|.++++|.++. .+||+
T Consensus        15 ~~~v~V~nLp~~~te~~l~~~f~~-------------~g~~~-~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~   79 (104)
T d1wi8a_          15 PYTAFLGNLPYDVTEESIKEFFRG-------------LNISA-VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE   79 (104)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTTT-------------SCEEE-EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHH-------------hcccc-ceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCC
Confidence            479999999999999999999986             45333 444554 457889999999999999998665 59999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .|.      .+.+.|.||..+.
T Consensus        80 ~~~------gr~l~V~~a~~~~   95 (104)
T d1wi8a_          80 SLG------NKRIRVDVADQAQ   95 (104)
T ss_dssp             EET------TEECEEEECCCCC
T ss_pred             EEC------CEEEEEEECCCCC
Confidence            985      4578999998653

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=8.3e-12  Score=93.78  Aligned_cols=76  Identities=13%  Similarity=0.244  Sum_probs=67.2

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..+++|.|.|||..+++++|+++|.+             +|....+.+..|      .|||||.|.+.++|.++++.+||
T Consensus         6 ~~~~~l~V~nLp~~~~~~~l~~~F~~-------------~G~i~~i~~~~~------k~~afV~f~~~~~A~~A~~~l~g   66 (86)
T d2cpja1           6 TQRSRLFVGNLPPDITEEEMRKLFEK-------------YGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDN   66 (86)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHHTST-------------TCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHH-------------hCCceEeeeecc------cceEEEEECCHHHHHHHHHHhCC
Confidence            35778999999999999999999987             678888888654      58999999999999999999999


Q ss_pred             CcccccCCCCCceEEEEeccC
Q 037791          194 YKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAri  214 (295)
                      ..|.      ++.+.|.||..
T Consensus        67 ~~i~------g~~l~V~~A~~   81 (86)
T d2cpja1          67 MPLR------GKQLRVRFACH   81 (86)
T ss_dssp             CCBT------TBCCEEEESSC
T ss_pred             CEEC------CEEEEEEECCC
Confidence            9996      45789999974

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.4e-12  Score=92.73  Aligned_cols=76  Identities=18%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC-c
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY-K  195 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~-~  195 (295)
                      .+|.|+|||..+|+++|.++|.+++             ..      .+.......|||||.|.++++|.++++.+||. .
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G-------------~i------~~~~~~~~rg~aFV~f~~~~~A~~Ai~~lng~~~   62 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRK-------------LP------LAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE   62 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTT-------------CC------CSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhC-------------cE------EEeEEecccceEEEEECCHHHHHHHHHHhCCCeE
Confidence            4799999999999999999999853             21      23333445799999999999999999999996 4


Q ss_pred             ccccCCCCCceEEEEeccCcCh
Q 037791          196 WEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQGk  217 (295)
                      +.      ++.+.|.||..++.
T Consensus        63 ~~------G~~i~V~~a~~k~~   78 (80)
T d2cqha1          63 LH------GKIMEVDYSVSKKL   78 (80)
T ss_dssp             ET------TEECEEEECCCCCC
T ss_pred             EC------CEEEEEEEcCCcCc
Confidence            64      57899999997653

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.4e-12  Score=97.07  Aligned_cols=69  Identities=16%  Similarity=0.186  Sum_probs=62.1

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ..|+|.|.|||..+|+++|.++|.+             +|.+..+.+..| .++.+.|||||.|.++++|.++++.+||.
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~-------------~G~i~~~~~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~lng~   82 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKP-------------FGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGK   82 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTT-------------TSCEEEEEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhh-------------cccccceeeecc-cccccccceeEEeCCHHHHHHHHHHhCCC
Confidence            3589999999999999999999987             677777777777 47889999999999999999999999999


Q ss_pred             ccc
Q 037791          195 KWE  197 (295)
Q Consensus       195 ~w~  197 (295)
                      .+.
T Consensus        83 ~i~   85 (101)
T d1x5oa1          83 FIK   85 (101)
T ss_dssp             CCC
T ss_pred             EEC
Confidence            886

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.9e-11  Score=88.22  Aligned_cols=76  Identities=14%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      -+|.|.|||..+|+++|+++|.+             +|...-+-++.|..++.+.|||||.|.+++++.++. .+||+.+
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~-------------~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al-~~~~~~l   68 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQ-------------YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTV   68 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTT-------------TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH-HCSCCEE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHH-------------hccccccccccCCCCcccccEEEEEEcCHHHHHHHH-HhCCCEE
Confidence            38999999999999999999998             678888899999999999999999999999888887 4899988


Q ss_pred             cccCCCCCceEEEEec
Q 037791          197 EVEAPGNKKMCEIACA  212 (295)
Q Consensus       197 ~~~~~gS~KiceVsyA  212 (295)
                      .      ++.++|..|
T Consensus        69 ~------Gr~i~V~~A   78 (79)
T d1l3ka2          69 N------GHNCEVRKA   78 (79)
T ss_dssp             T------TEECEEEEC
T ss_pred             C------CEEEEEEEC
Confidence            5      457888876

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.3e-11  Score=89.93  Aligned_cols=78  Identities=13%  Similarity=0.155  Sum_probs=62.8

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -+||+|.|||..+|+++|.++|.++             |.+.-+-+.    .+.+.|||||.|.+.++|.+++..+||+.
T Consensus        10 s~tL~V~NLp~~~te~~l~~~F~~~-------------G~v~~~~~~----~~~~~~~afV~f~~~~~A~~A~~~l~~~~   72 (88)
T d2adca2          10 SATLHLSNIPPSVSEEDLKVLFSSN-------------GGVVKGFKF----FQKDRKMALIQMGSVEEAVQALIDLHNHD   72 (88)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTT-------------SCCEEEEEE----CSSSTTCEEEEESSHHHHHHHHHHHTTCB
T ss_pred             CCEEEEECCCCCCCHHHHHHHhhcc-------------CCEEEEEEe----eecccceeEEEECCHHHHHHHHHhccCCE
Confidence            3589999999999999999999984             444333222    24467999999999999999999999998


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      +.     .++.+.|+||+.+
T Consensus        73 i~-----~g~~l~v~~sk~~   87 (88)
T d2adca2          73 LG-----ENHHLRVSFSKST   87 (88)
T ss_dssp             SS-----SSCBCEEEECSSC
T ss_pred             ec-----CCCEEEEEeCCCC
Confidence            74     2457899999854

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.7e-11  Score=90.76  Aligned_cols=76  Identities=20%  Similarity=0.280  Sum_probs=66.1

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      ..||.|+|||..+|+++|+++|..             +|.+.-+.|+.|. ++.++|||||.|.++++|.++++ ++|..
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~-------------~G~v~~v~l~~~~-~~~~kG~afV~f~~~e~a~~al~-~~~~~   70 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLED-------------KGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVE-TPGQK   70 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTT-------------SCCEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHT-CCCCE
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHH-------------hcccccceeeeec-cCCcceEEEEEEcCHHHHHHHHH-HCCCE
Confidence            348999999999999999999987             6778888888775 78889999999999999999996 69999


Q ss_pred             ccccCCCCCceEEEEec
Q 037791          196 WEVEAPGNKKMCEIACA  212 (295)
Q Consensus       196 w~~~~~gS~KiceVsyA  212 (295)
                      |.      ++.+.|.|+
T Consensus        71 ~~------g~~l~v~~~   81 (85)
T d1zh5a2          71 YK------ETDLLILFK   81 (85)
T ss_dssp             ET------TEECEEEEG
T ss_pred             EC------CEEEEEEEc
Confidence            85      457788775

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.8e-11  Score=92.91  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=67.1

Q ss_pred             ccEEEEcCCC-CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          116 NTTLMIRNIP-NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       116 RTTVMIRNIP-Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .|||.|.||| ..+|+++|+++|..             +|.+.-+.+..|.     .|||||.|.+.++|.++++.+||.
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~-------------fG~I~~v~i~~~~-----kg~afV~f~~~~~A~~ai~~lng~   63 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGV-------------YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH   63 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHH-------------HTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhh-------------ccccceEEEEecc-----cceEEEEECCHHHHHHHHHHhCCC
Confidence            5799999995 56999999999998             6888888887763     599999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      ++.+.|.||+.+.
T Consensus        64 ~l~------g~~l~v~~s~~~~   79 (109)
T d2adca1          64 KLH------GKPIRITLSKHQN   79 (109)
T ss_dssp             BCS------SSBCEEECCSCCC
T ss_pred             EEC------CEEEEEEECCCCC
Confidence            985      4589999997543

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=3e-11  Score=92.18  Aligned_cols=76  Identities=12%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -+||.|.|||..+|+++|+++|.+             +|.+..+.+..      +.|||||.|.+.++|..+++.+||..
T Consensus        17 s~tl~V~nLp~~~t~~~l~~~f~~-------------~G~i~~~~~~~------~~~~afV~f~~~~~A~~A~~~l~~~~   77 (97)
T d1whya_          17 TTRLWVGGLGPNTSLAALAREFDR-------------FGSIRTIDHVK------GDSFAYIQYESLDAAQAACAKMRGFP   77 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHT-------------TSCEEEEEECS------SSCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHh-------------hcccceEeeec------cccEEEeccCCHHHHHHHHHHhCCCE
Confidence            468999999999999999999998             56666665532      36899999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccC
Q 037791          196 WEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAri  214 (295)
                      |.    +....+.|.||+.
T Consensus        78 i~----g~~~~l~v~~ak~   92 (97)
T d1whya_          78 LG----GPDRRLRVDFAKS   92 (97)
T ss_dssp             CS----SSSCBCEEEECCC
T ss_pred             eC----CCceEEEEEeCCC
Confidence            86    2456799999985

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.6e-11  Score=88.59  Aligned_cols=73  Identities=16%  Similarity=0.053  Sum_probs=63.2

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -+||.|.|||  +|+++|+++|.+             +|.+..+.+..      +.|||||.|.+.++|..+++.+||..
T Consensus         5 ~~ti~V~~~~--~te~~L~~~F~~-------------~G~I~~v~~~~------~~~~afV~f~~~~~A~~Ai~~lng~~   63 (79)
T d2bz2a1           5 GNTLYVYGED--MTPTLLRGAFSP-------------FGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQ   63 (79)
T ss_dssp             CCEEEEECSS--CCHHHHHHHHST-------------TCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCB
T ss_pred             CCEEEEECCC--CCHHHHHHHHhc-------------cCccceeeecc------CCCEEEEEEcccHHHHHHHHHhCCCE
Confidence            4699999996  899999999998             67777776653      45899999999999999999999999


Q ss_pred             ccccCCCCCceEEEEeccCc
Q 037791          196 WEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQ  215 (295)
                      |.      ++.+.|.||+.|
T Consensus        64 ~~------g~~l~V~~a~~~   77 (79)
T d2bz2a1          64 VE------SVQLKVNIARKQ   77 (79)
T ss_dssp             CS------SCBCEEEECCSS
T ss_pred             EC------CEEEEEEEecCC
Confidence            96      457899999876

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=2e-11  Score=89.63  Aligned_cols=71  Identities=14%  Similarity=0.264  Sum_probs=59.4

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcccc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWEV  198 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~~  198 (295)
                      |.|+|||..+|.++|.++|.+             +|   ..++    .++.+.|||||.|.+.++|.++++.+||..+. 
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~-------------~g---~~~~----~~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~-   59 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSD-------------YE---LKYC----FVDKYKGTAFVTLLNGEQAEAAINTFHQSRLR-   59 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTT-------------SC---EEEE----EEETTTTEEEEEESSHHHHHHHHHHHTTEESS-
T ss_pred             CEEeCCCCcCCHHHHHHHHhc-------------cc---ccce----eecccceeEEEEECCHHHHHHHHHHhCCccCC-
Confidence            689999999999999999976             33   2222    23557899999999999999999999999995 


Q ss_pred             cCCCCCceEEEEeccCc
Q 037791          199 EAPGNKKMCEIACADIQ  215 (295)
Q Consensus       199 ~~~gS~KiceVsyAriQ  215 (295)
                           ++.+.|.||+..
T Consensus        60 -----g~~l~V~~a~~d   71 (75)
T d1wi6a1          60 -----ERELSVQLQPTD   71 (75)
T ss_dssp             -----SCEEEEEECCST
T ss_pred             -----CCEEEEEEeCCC
Confidence                 568999999754

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.8e-11  Score=90.32  Aligned_cols=75  Identities=16%  Similarity=0.329  Sum_probs=64.9

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      .|.|.|||.++|+++|+++|.+             +|.+.-+.|++|..|+.++|||||.|.+.++|.++++. +++.+.
T Consensus         1 klfVgnLp~~~te~~l~~~F~~-------------~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~-~~~~i~   66 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGG-------------FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG   66 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHH-------------HSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTC-SSCCBT
T ss_pred             CEEEcCCCCCCCHHHHHHHHHH-------------hCCcccccccccccccccccEEEEEECCHHHHHHHHhh-CCCEEC
Confidence            3789999999999999999998             68899999999999999999999999999999999865 555442


Q ss_pred             ccCCCCCceEEEEec
Q 037791          198 VEAPGNKKMCEIACA  212 (295)
Q Consensus       198 ~~~~gS~KiceVsyA  212 (295)
                            .+.++|..|
T Consensus        67 ------g~~i~vk~A   75 (75)
T d1x0fa1          67 ------LSKCEIKVA   75 (75)
T ss_dssp             ------TBCCEEECC
T ss_pred             ------CEEeEEEEC
Confidence                  456777665

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.9e-11  Score=90.39  Aligned_cols=83  Identities=19%  Similarity=0.240  Sum_probs=68.3

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      .||.|.|||..+|+++|++.|.+++.         -+|..-.+.++   .++.+.|||||.|.+.++|.++++.+||..|
T Consensus         4 ~tl~V~nLp~~~t~~dl~~~l~~~f~---------~~G~i~~i~~~---~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~   71 (91)
T d1nu4a_           4 HTIYINNLNEKIKKDELKKSLHAIFS---------RFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPF   71 (91)
T ss_dssp             SEEEEESCCTTSCHHHHHHHHHHHHG---------GGSCEEEEECC---HHHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhc---------ccccccceEEe---eeccCCCceEEEECCHHHHHHHHHHhCCCEE
Confidence            58999999999999999988765431         15666666654   3566889999999999999999999999998


Q ss_pred             cccCCCCCceEEEEeccCcCh
Q 037791          197 EVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQGk  217 (295)
                      .      ++.+.|.||+.+..
T Consensus        72 ~------g~~l~v~~ak~~~~   86 (91)
T d1nu4a_          72 Y------DKPMRIQYAKTDSD   86 (91)
T ss_dssp             T------TEECEEEECSSCCT
T ss_pred             C------CEEEEEEEeCCCch
Confidence            5      56899999987653

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=4.6e-11  Score=87.65  Aligned_cols=74  Identities=14%  Similarity=0.249  Sum_probs=63.5

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      |||.|+|||...|+++|+++|..             +|.+..+.|+.|...  +.|||||.|.+.++|.+++ .+||+.+
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~-------------~G~I~~v~~~~~~~~--~~~~afV~F~~~~~a~~Al-~~~~~~i   64 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKH-------------CGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVV   64 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHhc-------------CCceEEEEEEeeccc--cceEEEEEEcchHHhHHHH-HhcCcEE
Confidence            89999999999999999999997             688888999888654  4589999999999999997 5899988


Q ss_pred             cccCCCCCceEEEEec
Q 037791          197 EVEAPGNKKMCEIACA  212 (295)
Q Consensus       197 ~~~~~gS~KiceVsyA  212 (295)
                      .      ++.+.|+-+
T Consensus        65 ~------g~~i~V~~~   74 (75)
T d2ghpa2          65 G------QNEIIVSHL   74 (75)
T ss_dssp             T------TEECEEEEC
T ss_pred             C------CEEEEEEEC
Confidence            5      456777654

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.9e-11  Score=92.30  Aligned_cols=78  Identities=10%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             CCccEEEEcCCCCccCHHHHHH---HHhhhchhhhhcccCccCCCccEEEecccccCCc---ceeeEEEecCCHHHHHHH
Q 037791          114 GENTTLMIRNIPNNLKRRDLLH---ILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRA---NLGYAFVNFTTAAGALRF  187 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~---ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~---N~GYAFVNF~spedA~~F  187 (295)
                      ..+++|.|.|||.++|+++|+.   +|..             +|.+..+.++.|..++.   ..|||||.|.++++|.++
T Consensus         6 iq~n~vyV~nLp~~~t~~~l~~~~e~F~~-------------~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~A   72 (89)
T d2cpia1           6 VQKNLVFVVGLSQRLADPEVLKRPEYFGK-------------FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRA   72 (89)
T ss_dssp             CCSSCEEEEEECTTTCCHHHHHSTTTTTT-------------TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHH
T ss_pred             EecCEEEEECCCCccCHHHHHHHHHHhcc-------------cCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHH
Confidence            3477899999999999999954   4544             78899999999977654   459999999999999999


Q ss_pred             HHHhcCCcccccCCCCCceEEEE
Q 037791          188 WKACNKYKWEVEAPGNKKMCEIA  210 (295)
Q Consensus       188 ~~~fnG~~w~~~~~gS~KiceVs  210 (295)
                      ++.+||..|.      ++.+.|+
T Consensus        73 i~~lng~~~~------gr~lkvS   89 (89)
T d2cpia1          73 IQCVNNVVVD------GRTLKAS   89 (89)
T ss_dssp             HHHHTTEEET------TEEEEEE
T ss_pred             HHHhCCCEEC------CEEEEEC
Confidence            9999999985      4566664

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9.5e-11  Score=95.80  Aligned_cols=83  Identities=13%  Similarity=0.164  Sum_probs=73.4

Q ss_pred             CCCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHh
Q 037791          112 MLGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKAC  191 (295)
Q Consensus       112 ~~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~f  191 (295)
                      ..+..+||.|+|||..+|+++|+++|..             +|.+..+.+..|..++.+.|||||.|.+.++|.++++ .
T Consensus        93 ~~~~~~~i~V~~lp~~~te~~L~~~f~~-------------~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~  158 (183)
T d1u1qa_          93 AHLTVKKIFVGGIKEDTEEHHLRDYFEQ-------------YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-Q  158 (183)
T ss_dssp             TTCCCSEEEEECCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHT-S
T ss_pred             cccccceeEEccCCCcCCHHHHhhhhcc-------------CCceeeeeeecccccCccceeEEEEECCHHHHHHHHH-h
Confidence            4566789999999999999999999998             6889999999999999999999999999999999987 6


Q ss_pred             cCCcccccCCCCCceEEEEeccC
Q 037791          192 NKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       192 nG~~w~~~~~gS~KiceVsyAri  214 (295)
                      +|+.+.      ++.+.|.||..
T Consensus       159 ~~~~~~------G~~i~V~~A~~  175 (183)
T d1u1qa_         159 KYHTVN------GHNCEVRKALS  175 (183)
T ss_dssp             SCEEET------TEEEEEEECCC
T ss_pred             CCCeEC------CEEEEEEecCC
Confidence            887653      46899999853

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.3e-11  Score=91.44  Aligned_cols=84  Identities=8%  Similarity=-0.037  Sum_probs=69.9

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ....++|.|+|||..+|+++|.++|++             +|.+--+.+..+    .+.|||||.|.++++|..+++.+|
T Consensus         4 ~s~~~~v~V~NL~~~vte~~L~~~F~~-------------~G~i~~~~i~~~----~~~g~aFV~f~~~e~A~~Ai~~ln   66 (108)
T d2adba1           4 QSPVLRIIVENLFYPVTLDVLHQIFSK-------------FGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLD   66 (108)
T ss_dssp             CCCEEEEESCSCCSTTHHHHHHHHHTT-------------TSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCcCCCCCHHHHHHHHcc-------------CCcEEEEEEEee----CCCCeEEEEECCHHHHHHHHHHHC
Confidence            344668999999999999999999998             677777777655    357999999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+..    ....+.|.||+.|..
T Consensus        67 ~~~l~~----~~~~l~v~~s~~~~~   87 (108)
T d2adba1          67 GQNIYN----ACCTLRIDFSKLTSL   87 (108)
T ss_dssp             SCCSST----TCCCCEEEECSSCSC
T ss_pred             CCEecc----CCcEEEEEecCCccc
Confidence            999852    345789999987653

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=7.9e-11  Score=90.56  Aligned_cols=75  Identities=9%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      ...+|.|.|||..++.++|.++|.+             +|.+..+-|..       .|||||.|.+.++|.++++.|||.
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~-------------~G~v~~~~i~~-------~g~afV~f~~~~~a~~Ai~~lng~   73 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMRE-------------AGDVCYADVQK-------DGMGMVEYLRKEDMEYALRKLDDT   73 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTT-------------SSCEEEEEEET-------TTEEEEEESSHHHHHHHHHHHSSE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHh-------------hcccccccccc-------cceEEEEECCHHHHHHHHHHhCCC
Confidence            3558999999999999999999987             56776666643       389999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCc
Q 037791          195 KWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQ  215 (295)
                      .|.      .+.+.|.|++.+
T Consensus        74 ~~~------g~~i~v~~~~~~   88 (98)
T d1wg4a_          74 KFR------SHEGETSYIRVY   88 (98)
T ss_dssp             EEE------CTTSCEEEEEEE
T ss_pred             EeC------CeEEEEEEEecC
Confidence            997      335688888764

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.5e-11  Score=85.48  Aligned_cols=66  Identities=20%  Similarity=0.255  Sum_probs=60.9

Q ss_pred             EEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          119 LMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       119 VMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      |.|.|||..+|+++|.++|.+             +|..--+-+..|..++.+.|||||.|.++++|.++++.+||+.+.
T Consensus         1 lyV~nLp~~~te~~l~~~F~~-------------~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~   66 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQP-------------YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ   66 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTT-------------TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhh-------------hccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEEC
Confidence            689999999999999999987             567777778889899999999999999999999999999999886

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.8e-10  Score=88.65  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=66.4

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+.-++|.|+|||-..|+++|+++|..+             |...-.-+.++..++.+.|||||.|.++++|.++++ +|
T Consensus        12 ~~~~~~v~v~nLP~~~te~dI~~~F~~~-------------g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~   77 (104)
T d1wg5a_          12 TANDGFVRLRGLPFGCSKEEIVQFFSGL-------------EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KH   77 (104)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHTTTC-------------CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TT
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhc-------------CCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hC
Confidence            4455689999999999999999999874             333333456666788999999999999999998885 89


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |+.+.      .+.++|.+|+.+
T Consensus        78 ~~~i~------gR~i~V~~~~~~   94 (104)
T d1wg5a_          78 KERIG------HRYIEIFKSSRA   94 (104)
T ss_dssp             TCCSS------SSCCEEEEECTT
T ss_pred             CCEEc------ceEEEEEECCHH
Confidence            98874      456788888643

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4e-11  Score=89.81  Aligned_cols=72  Identities=14%  Similarity=0.201  Sum_probs=60.5

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|+|.|||..+|+++|.++|.+             +|.+-.+.+..|       |||||.|.+.++|..+++.+||..+.
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~-------------~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~   61 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMRE-------------AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR   61 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGG-------------GSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred             eEEEECCCCcCCHHHHHHHHhh-------------hccccccccccc-------ceeeEEeCCHHHHHHHHHHhCCCEEC
Confidence            5899999999999999999998             567777776654       99999999999999999999999986


Q ss_pred             ccCCCCCceEEEEeccCc
Q 037791          198 VEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       198 ~~~~gS~KiceVsyAriQ  215 (295)
                      .      +.+.|.|++.+
T Consensus        62 g------~~i~v~~~~~~   73 (87)
T d3begb1          62 S------HEGETAYIRVK   73 (87)
T ss_dssp             C------TTSCCCBCEEE
T ss_pred             C------cEeEEeEEecC
Confidence            3      24566666544

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.5e-10  Score=88.58  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=66.2

Q ss_pred             CCCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          113 LGENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       113 ~d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      .+..|+|.|+|||-..|+++|+++|..             +|......+..+..++...|||||.|.++++|.++++ +|
T Consensus         5 ~~~~~~v~v~nLp~~~t~~~l~~~F~~-------------~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n   70 (103)
T d2cpya1           5 NSAKVCAHITNIPFSITKMDVLQFLEG-------------IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LH   70 (103)
T ss_dssp             CSCCCEEEEESCCTTSCHHHHHHHTTT-------------SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GC
T ss_pred             CCCceEEEEeCCCCCCCHHHHhhhhcc-------------cceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cC
Confidence            345789999999999999999999987             3444433334444578889999999999999999996 89


Q ss_pred             CCcccccCCCCCceEEEEeccCc
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQ  215 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQ  215 (295)
                      |+.+.      ++.+.|.+|.-+
T Consensus        71 ~~~i~------gr~i~V~~~~~~   87 (103)
T d2cpya1          71 RKKLN------GREAFVHVVTLE   87 (103)
T ss_dssp             SEEET------TEEEEEEEECHH
T ss_pred             CCeEC------CcEEEEEECCHH
Confidence            99874      568899888543

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.9e-10  Score=84.14  Aligned_cols=79  Identities=11%  Similarity=0.169  Sum_probs=64.5

Q ss_pred             CccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          115 ENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       115 ~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .-.||.|+|||.++|+++|+++|..             +|.+..+.+..      +.|||||.|.+.++|.++++.++|.
T Consensus         7 Ps~~l~V~nLp~~~t~~~L~~~f~~-------------~G~i~~v~~~~------~~~~afV~f~~~e~A~~a~~~~~~~   67 (88)
T d2cq1a1           7 PSRVLHIRKLPGEVTETEVIALGLP-------------FGKVTNILMLK------GKNQAFLELATEEAAITMVNYYSAV   67 (88)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHTTTT-------------TSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhc-------------ccccccccccc------cceEEEEEeCCHHHHHHHHHHHccC
Confidence            3559999999999999999999987             56666665543      3589999999999999999998776


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.-    .++.+.|.||+.|.
T Consensus        68 ~~~~----~g~~l~v~~sk~~~   85 (88)
T d2cq1a1          68 TPHL----RNQPIYIQYSNHKE   85 (88)
T ss_dssp             CCEE----TTEECEEEECSCSS
T ss_pred             CCcc----CCCEEEEEECCCCC
Confidence            5442    36789999998764

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.1e-10  Score=88.07  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=64.8

Q ss_pred             cEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCcc
Q 037791          117 TTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKW  196 (295)
Q Consensus       117 TTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w  196 (295)
                      -||.|+|||...|+++|+++|..             .+ ..-+.+..|. ++.+.|||||.|.+.++|.++++ +||+.+
T Consensus        16 ~~v~v~nLp~~~te~dl~~~F~~-------------~~-~~~v~~~~~~-~g~~~G~afVeF~~~~~a~~Al~-~~~~~i   79 (102)
T d1weza_          16 HCVHMRGLPYRATENDIYNFFSP-------------LN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANM   79 (102)
T ss_dssp             CEEEEESCCTTCCHHHHHHSSCS-------------CC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCS
T ss_pred             CEEEEeCCCCcCCHHHHHHHHhc-------------cC-cceeeeEEec-CCcceEEEEEEECCHHHHHHHHH-cCCCEE
Confidence            38999999999999999999986             33 3456777775 47889999999999999999976 899988


Q ss_pred             cccCCCCCceEEEEeccCcC
Q 037791          197 EVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       197 ~~~~~gS~KiceVsyAriQG  216 (295)
                      .      .+.++|.+|...+
T Consensus        80 ~------gR~I~V~~s~~~~   93 (102)
T d1weza_          80 Q------HRYVELFLNSTAG   93 (102)
T ss_dssp             S------SSCCEEEEECCCC
T ss_pred             C------CEEEEEEEcCCCC
Confidence            5      4578999987654

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=4.2e-10  Score=86.70  Aligned_cols=78  Identities=10%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      -.+|.|+|||..+|+++|+++|..             +|.+..+.|..      ..|||||.|.+.++|..+++.+++..
T Consensus        15 s~~l~v~nlp~~~te~~l~~~F~~-------------fG~I~~~~~~~------~k~~AfV~f~~~e~A~~ai~~~~~~~   75 (104)
T d1wexa_          15 SPVVHVRGLCESVVEADLVEALEK-------------FGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVP   75 (104)
T ss_dssp             CSEEEEESCCSSCCHHHHHHHHTT-------------TSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHhhhh-------------cccceEEEEEe------cceeEEEEeCCHHHHHHHHHHHcCCC
Confidence            348999999999999999999997             67777776643      35899999999999999999997665


Q ss_pred             ccccCCCCCceEEEEeccCcC
Q 037791          196 WEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       196 w~~~~~gS~KiceVsyAriQG  216 (295)
                      ...    ..+.+.|.||+.|.
T Consensus        76 ~~~----~g~~l~v~~s~~~~   92 (104)
T d1wexa_          76 VYI----AGQQAFFNYSTSKR   92 (104)
T ss_dssp             CBS----SSSBCEEEECSSSS
T ss_pred             cEE----eeEEEEEEEcCCCc
Confidence            431    25578999998764

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.1e-10  Score=85.96  Aligned_cols=77  Identities=12%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ..-+||.|.|||..+|+++|+++|.+             +|.+.-+.++.     .+.|||||.|.+.++|..++.  ++
T Consensus         3 ~~s~~lfV~nLp~~~te~~L~~~F~~-------------~G~v~~v~~~~-----~~~gfafV~f~~~~~a~~a~~--~~   62 (88)
T d1wf0a_           3 SGSSGVFVGRCTGDMTEDELREFFSQ-------------YGDVMDVFIPK-----PFRAFAFVTFADDQIAQSLCG--ED   62 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTT-------------TSCCCEEECCS-----SCCSCCEEECSCHHHHHHTTT--CE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHH-------------cCCceEEEEee-----ccCceEEEEECCHHHHHHHHh--CC
Confidence            34679999999999999999999998             56666666554     357999999999999999875  67


Q ss_pred             CcccccCCCCCceEEEEeccCcC
Q 037791          194 YKWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQG  216 (295)
                      +.+.      .+.+.|.||+...
T Consensus        63 ~~i~------g~~l~v~~a~~k~   79 (88)
T d1wf0a_          63 LIIK------GISVHISNAEPKH   79 (88)
T ss_dssp             EEET------TEEEEEECCCCCC
T ss_pred             CEEC------CEEeEEEeCCCCC
Confidence            6653      5689999997543

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.5e-10  Score=87.73  Aligned_cols=74  Identities=18%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             ccEEEEcCCC-CccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          116 NTTLMIRNIP-NNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       116 RTTVMIRNIP-Nk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      .++|.|.||| ...++++|.++|.+             +|.+--+-+        ++|||||.|.+.++|.++++.+||+
T Consensus        15 ~~~lfV~nL~~~~~~~~~L~~~F~~-------------~G~i~~~~i--------~rg~aFV~f~~~~~A~~Ai~~lng~   73 (98)
T d1wf2a_          15 NSRVFIGNLNTLVVKKSDVEAIFSK-------------YGKIVGCSV--------HKGFAFVQYVNERNARAAVAGEDGR   73 (98)
T ss_dssp             CCCEEEEEECTTTCCHHHHHHSSTT-------------SSCEEEEEE--------ETEEEEEEESSHHHHHHHHHTTTTC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHhh-------------cCCEEEEEE--------eCCeEEEEECCHHHHHHHHHHcCCC
Confidence            4579999996 56788899999997             566555544        4699999999999999999999999


Q ss_pred             cccccCCCCCceEEEEeccCcC
Q 037791          195 KWEVEAPGNKKMCEIACADIQG  216 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQG  216 (295)
                      .+.      .+.+.|.||+.+.
T Consensus        74 ~~~------g~~l~V~~a~~~~   89 (98)
T d1wf2a_          74 MIA------GQVLDINLAAEPK   89 (98)
T ss_dssp             EET------TEECEEEETTSCC
T ss_pred             EEC------CEEEEEEECCCCC
Confidence            885      5689999998653

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.4e-10  Score=89.32  Aligned_cols=84  Identities=10%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CCccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcC
Q 037791          114 GENTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNK  193 (295)
Q Consensus       114 d~RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG  193 (295)
                      ....||.|+|||-.+|.++|+++|..             .|...-..++++..++.+.|||||.|.+.++|.++.+ +||
T Consensus        16 ~~~~~i~v~nLp~~~t~~di~~~F~~-------------~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~   81 (112)
T d1wela1          16 EAGFCVYLKGLPFEAENKHVIDFFKK-------------LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK   81 (112)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHSCS-------------SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS
T ss_pred             CCCeEEEEecCCCcCcHHHHhhHHhh-------------ccccccceeeecCcccceeeEEEEEECCHHHHHHHHH-cCC
Confidence            34558999999999999999999987             3444434455666688899999999999999998885 899


Q ss_pred             CcccccCCCCCceEEEEeccCcCh
Q 037791          194 YKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       194 ~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      +.+.      +..++|..|.-+..
T Consensus        82 ~~i~------gR~i~V~~~~~~~~   99 (112)
T d1wela1          82 QYMG------NRFIQVHPITKKGM   99 (112)
T ss_dssp             BCST------TSCBEEEEECHHHH
T ss_pred             CcCC------CEEEEEEEcChHHH
Confidence            9875      44688888865554

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2e-09  Score=82.57  Aligned_cols=76  Identities=11%  Similarity=0.189  Sum_probs=61.3

Q ss_pred             CCCccEEEEcCCCC-ccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH-
Q 037791          113 LGENTTLMIRNIPN-NLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA-  190 (295)
Q Consensus       113 ~d~RTTVMIRNIPN-k~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~-  190 (295)
                      ....+||+|+|||. .+|+++|.++|..             +|.+.-+.+..|      .|||||.|.+.++|.++++. 
T Consensus        15 ~~~~~~l~v~nLp~~~~te~~l~~~F~~-------------fG~V~~v~~~~~------k~~afV~f~~~~~A~~Ai~~~   75 (99)
T d1x4fa1          15 QELGRVIHLSNLPHSGYSDSAVLKLAEP-------------YGKIKNYILMRM------KSQAFIEMETREDAMAMVDHC   75 (99)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTT-------------TSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCcCCccCHHHHHhhhcc-------------ccceeEEEEeec------CCcEEEEecchHHHHHHHHHH
Confidence            34457999999997 5999999999998             677777776533      58999999999999999985 


Q ss_pred             -hcCCcccccCCCCCceEEEEecc
Q 037791          191 -CNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       191 -fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                       .++..|.      ++.+.|.||+
T Consensus        76 ~~~~~~~~------gr~l~V~~s~   93 (99)
T d1x4fa1          76 LKKALWFQ------GRCVKVDLSE   93 (99)
T ss_dssp             HHSCCCSS------SSCCEEEEEC
T ss_pred             hcCCceEC------CEEEEEEEcC
Confidence             4555553      5678999995

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=4.7e-10  Score=87.38  Aligned_cols=83  Identities=11%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             CCccEEEEcCCCCcc-CHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNNL-KRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk~-Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      ..-++|.|.||+.+. +++++++.|.+.+.         .+|..--+-+.      .++|||||+|.+.++|.++++.+|
T Consensus         3 ~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~---------~~G~i~~~~~~------k~~~~afV~f~~~~~A~~Ai~~ln   67 (104)
T d1weya_           3 SGSSGLIACVANDDVFSESETRAKFESLFR---------TYDKDTTFQYF------KSFKRVRINFSNPLSAADARLRLH   67 (104)
T ss_dssp             SCCCEEEEECCCGGGGSTTTHHHHHHHHHH---------TTCSSCEEEEE------TTTTEEEEECSSTTHHHHHHHTST
T ss_pred             CCCceEEEEeCCchhcCcHHHHHHHHHHhc---------ccccceEEEEe------cCCCEEEEEECCHHHHHHHHHHhc
Confidence            346799999999995 76655554444321         14444333322      346899999999999999999999


Q ss_pred             CCcccccCCCCCceEEEEeccCcCh
Q 037791          193 KYKWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      |..+.      ++.+.|.||+.|-.
T Consensus        68 g~~~~------g~~l~v~~a~~~~~   86 (104)
T d1weya_          68 KTEFL------GKEMKLYFAQTLHI   86 (104)
T ss_dssp             TSEET------TEECEEECCCCSSC
T ss_pred             ccccC------CCEeEEeecccCCC
Confidence            99985      56899999987743

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.7e-09  Score=82.47  Aligned_cols=81  Identities=21%  Similarity=0.314  Sum_probs=62.3

Q ss_pred             CCCccEEEEcC--CCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          113 LGENTTLMIRN--IPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       113 ~d~RTTVMIRN--IPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      .+..++|.|.|  ||..+|+++|+++|.+             +|.+.-+.+..|      .|||||.|.+.++|..+++.
T Consensus        15 ~~pt~~l~V~ng~L~~~vte~~L~~~F~~-------------~G~i~~i~~~~~------k~~aFV~f~~~e~A~~A~~~   75 (101)
T d2cq2a1          15 SYATQSLVVANGGLGNGVSRNQLLPVLEK-------------CGLVDALLMPPN------KPYSFARYRTTEESKRAYVT   75 (101)
T ss_dssp             SSCCSEEEEETCTGGGTCCHHHHHHHHHH-------------HSCEEEEECCTT------CSCEEEEESSHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCCCCHHHHHHHHHh-------------hCcccEEeeccC------ccEEEEEECCHHHHHHHHHH
Confidence            34456888987  9999999999999998             577777766654      58999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEecc
Q 037791          191 CNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      +||+...... +.....-++|+.
T Consensus        76 lng~~i~~~~-~~~i~~~~~~~~   97 (101)
T d2cq2a1          76 LNGKEVVDDL-GQKITLYLNFVE   97 (101)
T ss_dssp             TTTCEEECTT-SCEEECEEEEES
T ss_pred             hCCCCCCCCC-CcEEEEEEEeee
Confidence            9999875432 122234445543

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.9e-10  Score=87.27  Aligned_cols=77  Identities=8%  Similarity=0.051  Sum_probs=68.3

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .|.+-|+|++..+++++|.++|.+             +|++..+.++.| .++..+|||||.|.+.++|.++++.+||+.
T Consensus        27 ~~~~~v~~~~~~~~ed~l~e~f~k-------------~G~I~~v~I~~~-~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~   92 (104)
T d1jmta_          27 VSDVEMQEHYDEFFEEVFTEMEEK-------------YGEVEEMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRW   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-------------TCCEEEEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred             cchHHhhhhhhhhhHHHHHHHhcc-------------CCCEEEEEeecC-CCCCEeeEEEEEEechhHHHHHHHHHCCCE
Confidence            467889999999999999999998             789999999766 678899999999999999999999999999


Q ss_pred             ccccCCCCCceEEEEec
Q 037791          196 WEVEAPGNKKMCEIACA  212 (295)
Q Consensus       196 w~~~~~gS~KiceVsyA  212 (295)
                      |.      ++.+.|+|.
T Consensus        93 ~~------gr~i~v~~s  103 (104)
T d1jmta_          93 FN------GQPIHAELS  103 (104)
T ss_dssp             ET------TEECCEEEC
T ss_pred             EC------CEEEEEEEC
Confidence            85      567777774

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.1e-10  Score=84.19  Aligned_cols=79  Identities=13%  Similarity=0.257  Sum_probs=58.7

Q ss_pred             EEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCccc
Q 037791          118 TLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYKWE  197 (295)
Q Consensus       118 TVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~w~  197 (295)
                      +|.|.|||.++|+++|+++|.+.+.......     -.-+   ...|..++.+.|||||.|.+.++|..+++ +||..|.
T Consensus         3 rlyVgNLp~~~te~~l~~~F~~~g~~~~~~~-----~~~~---~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l~g~~~~   73 (90)
T d1u2fa_           3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-----APGN---PVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQ   73 (90)
T ss_dssp             EEEECSCCTTCCTTHHHHHHHHHHTTTTSCC-----SSSC---SEEECCEETTTTEEEEEESSCTTTTTGGG-GSSCCSS
T ss_pred             EEEEcCCCCccchHHHHHHHHhhCcEEEEEE-----eccc---eeeecccCCCceEEEEEeCCHHHHHHHHh-hCCcEEC
Confidence            6999999999999999999998654332111     0011   12455677889999999999999999875 9999996


Q ss_pred             ccCCCCCceEEEEe
Q 037791          198 VEAPGNKKMCEIAC  211 (295)
Q Consensus       198 ~~~~gS~KiceVsy  211 (295)
                            ++.+.|..
T Consensus        74 ------Gr~l~V~r   81 (90)
T d1u2fa_          74 ------GQSLKIRR   81 (90)
T ss_dssp             ------SSCCCCBC
T ss_pred             ------CEEEEECC
Confidence                  34566643

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=2.1e-08  Score=75.42  Aligned_cols=78  Identities=13%  Similarity=0.075  Sum_probs=63.7

Q ss_pred             CCccEEEEcCCCCc-cCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhc
Q 037791          114 GENTTLMIRNIPNN-LKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACN  192 (295)
Q Consensus       114 d~RTTVMIRNIPNk-~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fn  192 (295)
                      +..-+|.|+|||.. .|+++|+++|..             +|.+.-+.+..+      .+||||.|.+.++|..+++.++
T Consensus         6 ~~sr~v~v~nl~~~~~t~~eL~~lF~~-------------fG~I~~i~i~~~------k~~afV~f~~~~~A~~A~~~l~   66 (89)
T d1x4da1           6 ETRRVVHIMDFQRGKNLRYQLLQLVEP-------------FGVISNHLILNK------INEAFIEMATTEDAQAAVDYYT   66 (89)
T ss_dssp             CCCCEEEEESCCCSSSHHHHHHTTTGG-------------GSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcCCHHHHHHHHHh-------------hCCeEEEEeecc------ceEEEEEEcchhhHHHHHHHHh
Confidence            34448999999986 899999999998             788888877654      3699999999999999999887


Q ss_pred             CCcccccCCCCCceEEEEeccC
Q 037791          193 KYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       193 G~~w~~~~~gS~KiceVsyAri  214 (295)
                      +.....    .++.+.|+||+-
T Consensus        67 ~~~~~~----~gr~l~V~~s~~   84 (89)
T d1x4da1          67 TTPALV----FGKPVRVHLSQK   84 (89)
T ss_dssp             HSCCEE----TTEECEEEEECC
T ss_pred             hCCCcc----CCceEEEEECCC
Confidence            655432    367899999974

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.6e-08  Score=80.12  Aligned_cols=66  Identities=14%  Similarity=0.119  Sum_probs=59.8

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCC
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKY  194 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~  194 (295)
                      -+||.|+|||..+|+++|+++|++             +|.+.-+.+..|..++.+.|||||-|.+.++|..++...++.
T Consensus         6 ~r~lfV~nLp~~~te~~L~~~F~~-------------~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~   71 (183)
T d1u1qa_           6 LRKLFIGGLSFETTDESLRSHFEQ-------------WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK   71 (183)
T ss_dssp             HHEEEEESCCTTCCHHHHHHHHGG-------------GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHH-------------cCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCc
Confidence            468999999999999999999987             678888899999999999999999999999999998876543

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1e-07  Score=74.29  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCH-HHHHHHHHHhcCC
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTA-AGALRFWKACNKY  194 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~sp-edA~~F~~~fnG~  194 (295)
                      -.++.|.|||..+|+++|+++|.+             +|.+.++.++.+      .|||||.|.++ ++|..++..+||.
T Consensus        11 ~~~~fvgnL~~~~tee~Lk~~F~~-------------fG~V~~v~i~~~------kg~gfV~F~~~~~~A~~a~~~~~~~   71 (113)
T d1owxa_          11 CLLKFSGDLDDQTCREDLHILFSN-------------HGEIKWIDFVRG------AKEGIILFKEKAKEALGKAKDANNG   71 (113)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTCS-------------SCCEEEEECCTT------CSEEEEEESSCHHHHHHHHHHTTTS
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHh-------------cCChheEEEecC------CceEEEEecCcHHHHHHHHHHhcCC
Confidence            557889999999999999999998             789999988754      69999999996 7899999999998


Q ss_pred             cccccCCCCCceEEEEeccCcCh
Q 037791          195 KWEVEAPGNKKMCEIACADIQGR  217 (295)
Q Consensus       195 ~w~~~~~gS~KiceVsyAriQGk  217 (295)
                      ....    ..  +.|.|+...|.
T Consensus        72 ~l~~----~~--~~v~~~~~~~~   88 (113)
T d1owxa_          72 NLQL----RN--KEVTWEVLEGE   88 (113)
T ss_dssp             CBCT----TS--SSEEEEECCHH
T ss_pred             ceec----Cc--eEEEEeeccch
Confidence            8762    23  34555555554

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.8e-07  Score=70.80  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=60.8

Q ss_pred             EEEEcCC--CCccCHH--------HHHHHHhhhchhhhhcccCccCCCccEEEecccccCC--cceeeEEEecCCHHHHH
Q 037791          118 TLMIRNI--PNNLKRR--------DLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRR--ANLGYAFVNFTTAAGAL  185 (295)
Q Consensus       118 TVMIRNI--PNk~Tq~--------~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~--~N~GYAFVNF~spedA~  185 (295)
                      +|.|+||  |..+..+        +|++.+.+             +|...-+.++.+..+.  .+.|||||.|.+.++|.
T Consensus         6 vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k-------------~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~   72 (104)
T d1o0pa_           6 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-------------YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQ   72 (104)
T ss_dssp             EEEEESSCCTTTTTSHHHHHHHHHHHHHHHTT-------------TSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHH
T ss_pred             EEEEeCCCCHHHcCCchhHHHHHHHHHHHhcc-------------cCceEEEEEeecCCCCccCCceEEEEEECCHHHHH
Confidence            6889999  7766322        23333333             7899999999876654  45699999999999999


Q ss_pred             HHHHHhcCCcccccCCCCCceEEEEeccC
Q 037791          186 RFWKACNKYKWEVEAPGNKKMCEIACADI  214 (295)
Q Consensus       186 ~F~~~fnG~~w~~~~~gS~KiceVsyAri  214 (295)
                      ++++.|||..+.      ++.+.|.|+..
T Consensus        73 ~A~~~l~Gr~f~------gR~v~v~f~~~   95 (104)
T d1o0pa_          73 KAMQGLTGRKFA------NRVVVTKYCDP   95 (104)
T ss_dssp             HHHHHHSSCCSS------SSCCEEEEECH
T ss_pred             HHHHHHCCCEEC------CeEEEEEEcCH
Confidence            999999999885      56889999864

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.1e-07  Score=69.55  Aligned_cols=77  Identities=17%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             EEEEcCC--CCccC-----HHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHH
Q 037791          118 TLMIRNI--PNNLK-----RRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKA  190 (295)
Q Consensus       118 TVMIRNI--PNk~T-----q~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~  190 (295)
                      +|.|+||  |..+.     ..+|.+.|.+.|.         -.|...-+.++.+.    ..|||||-|.+.++|.++++.
T Consensus        10 ~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~---------~~G~V~~v~~~~~~----~~G~~fV~f~~~e~A~~A~~~   76 (99)
T d2dita1          10 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECS---------KFGQIRKLLLFDRH----PDGVASVSFRDPEEADYCIQT   76 (99)
T ss_dssp             EEEEESSCCTTHHHHCSHHHHHHHHHHHHHGG---------GTSCCSEEEEETTC----TTCEEEEECSCHHHHHHHHHH
T ss_pred             EEEEccCCCHHHhhcchHHHHHHHHHHHHHhc---------CcccEEEEeccCCC----CccEEEEEECCHHHHHHHHHH
Confidence            8999999  76553     1244444444332         27888888876653    459999999999999999999


Q ss_pred             hcCCcccccCCCCCceEEEEecc
Q 037791          191 CNKYKWEVEAPGNKKMCEIACAD  213 (295)
Q Consensus       191 fnG~~w~~~~~gS~KiceVsyAr  213 (295)
                      |||..|.      ++.+.|.|+.
T Consensus        77 lng~~~~------gr~i~v~~~~   93 (99)
T d2dita1          77 LDGRWFG------GRQITAQAWD   93 (99)
T ss_dssp             STTCEET------TEECEEEECC
T ss_pred             hCCcEEC------CEEEEEEEeC
Confidence            9999996      5688999875

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=7.8e-05  Score=55.03  Aligned_cols=61  Identities=7%  Similarity=0.014  Sum_probs=48.3

Q ss_pred             ccEEEEcCCCCccCHHHHHHHHhhhchhhhhcccCccCCCccEEEecccccCCcceeeEEEecCCHHHHHHHHHHhcCCc
Q 037791          116 NTTLMIRNIPNNLKRRDLLHILDSHCRVEYLKSKWHCKSEFDFLYLPMDFRRRANLGYAFVNFTTAAGALRFWKACNKYK  195 (295)
Q Consensus       116 RTTVMIRNIPNk~Tq~~Ll~ilDe~c~~en~k~~~~~~G~YDFlYLPiDf~t~~N~GYAFVNF~spedA~~F~~~fnG~~  195 (295)
                      .|.|.|-.+|...+.+. ++.|.+             +|.+--+.+      ..+.|||||.|.++++|.++++ +||..
T Consensus         4 ~~wV~V~G~p~~~~~~i-l~~F~~-------------~G~I~~~~~------~~~~~~~fV~f~~~~~A~~Al~-~nG~~   62 (81)
T d1wwha1           4 DTWVTVFGFPQASASYI-LLQFAQ-------------YGNILKHVM------SNTGNWMHIRYQSKLQARKALS-KDGRI   62 (81)
T ss_dssp             GGEEEEECCCGGGHHHH-HHHHHT-------------TSCEEEEEE------CSSSSEEEEEESSHHHHHHHHT-TTTCE
T ss_pred             ccEEEEECCChHHHHHH-HHHHHh-------------hhhhheEEe------cCCCCEEEEEEcccHHHHHHHh-cCCCe
Confidence            46799999999998654 467887             566554443      3456999999999999999996 89998


Q ss_pred             cc
Q 037791          196 WE  197 (295)
Q Consensus       196 w~  197 (295)
                      +.
T Consensus        63 ~~   64 (81)
T d1wwha1          63 FG   64 (81)
T ss_dssp             ET
T ss_pred             EC
Confidence            85