Citrus Sinensis ID: 037821

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
MLQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDVK
ccEEEEEccccEEEEEcccccccccEEEEEEEEEEcHHHHHHHHHHHcccccccEEEEccccccccccccccccEEEcccccccEEcccccccccccEEEEEEEEccccccEEEEEEEEccccccccEEEEccccccccccccccccEEEcccccccccc
ccEEEEcccccccEEEccccccccEEEEEEEEEEEcHHHHHHHcHHHcccccccEEEEccccccccccccccccEEEEccccccHHHEEEccccccccEEEEEEEccccccccEEEEEEEcccccccEEEEEcccccccccccccEEEcccccHHHcccc
MLQVFLTDrhkgwglrtlqdlpkgsfvCEYVGEILTNTELYERnmqssgserhtypvtldadwgserilrDEEALCLdatfcgnvaRFINhrcfdanlidipveietpdrhyyhlaffttrdvsaseeltwdygidfsdhdhpikafhcccgsefcrdvk
mlqvfltdrhkgwglrtlqdlpkgsFVCEYVGEILTNTELYERNMqssgserhtypvtLDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGsefcrdvk
MLQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDVK
***VFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYE***********TYPVTLDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR***
MLQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDV*
MLQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDVK
MLQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFC****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query160 2.2.26 [Sep-21-2011]
Q8W595492 Histone-lysine N-methyltr yes no 0.993 0.323 0.793 2e-75
Q946J2734 Histone-lysine N-methyltr no no 0.968 0.211 0.641 3e-59
Q9FNC7717 Histone-lysine N-methyltr no no 0.943 0.210 0.621 5e-52
Q9H9B11298 Histone-lysine N-methyltr yes no 0.856 0.105 0.429 4e-26
Q5DW341296 Histone-lysine N-methyltr yes no 0.856 0.105 0.423 2e-25
Q9Z1481263 Histone-lysine N-methyltr no no 0.856 0.108 0.403 4e-25
Q96KQ71210 Histone-lysine N-methyltr no no 0.856 0.113 0.403 2e-23
Q294B9633 Histone-lysine N-methyltr yes no 0.931 0.235 0.396 3e-20
Q80UJ9309 Histone-lysine N-methyltr no no 0.812 0.420 0.4 4e-20
O648271382 Histone-lysine N-methyltr no no 0.937 0.108 0.355 7e-20
>sp|Q8W595|SUVR4_ARATH Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=2 SV=2 Back     alignment and function desciption
 Score =  280 bits (717), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 127/160 (79%), Positives = 142/160 (88%), Gaps = 1/160 (0%)

Query: 1   MLQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLD 60
            LQV+ T   KGWGLRTLQDLPKG+F+CEY+GEILTNTELY+RN++SS SERHTYPVTLD
Sbjct: 303 QLQVYFTQEGKGWGLRTLQDLPKGTFICEYIGEILTNTELYDRNVRSS-SERHTYPVTLD 361

Query: 61  ADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTT 120
           ADWGSE+ L+DEEALCLDAT CGNVARFINHRC DAN+IDIP+EIETPDRHYYH+AFFT 
Sbjct: 362 ADWGSEKDLKDEEALCLDATICGNVARFINHRCEDANMIDIPIEIETPDRHYYHIAFFTL 421

Query: 121 RDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDVK 160
           RDV A +ELTWDY IDF+D  HP+KAF CCCGSE CRD K
Sbjct: 422 RDVKAMDELTWDYMIDFNDKSHPVKAFRCCCGSESCRDRK 461
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q946J2|SUVR1_ARATH Histone-lysine N-methyltransferase SUVR1 OS=Arabidopsis thaliana GN=SUVR1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNC7|SUVR2_ARATH Histone-lysine N-methyltransferase SUVR2 OS=Arabidopsis thaliana GN=SUVR2 PE=2 SV=2 Back     alignment and function description
>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1 PE=1 SV=4 Back     alignment and function description
>sp|Q5DW34|EHMT1_MOUSE Histone-lysine N-methyltransferase EHMT1 OS=Mus musculus GN=Ehmt1 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z148|EHMT2_MOUSE Histone-lysine N-methyltransferase EHMT2 OS=Mus musculus GN=Ehmt2 PE=1 SV=2 Back     alignment and function description
>sp|Q96KQ7|EHMT2_HUMAN Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3 Back     alignment and function description
>sp|Q294B9|SUV39_DROPS Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila pseudoobscura pseudoobscura GN=Su(var)3-9 PE=3 SV=1 Back     alignment and function description
>sp|Q80UJ9|SETMR_MOUSE Histone-lysine N-methyltransferase SETMAR OS=Mus musculus GN=Setmar PE=2 SV=2 Back     alignment and function description
>sp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana GN=SUVR5 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
255561971 620 set domain protein, putative [Ricinus co 0.993 0.256 0.842 9e-78
356574896 749 PREDICTED: histone-lysine N-methyltransf 0.993 0.212 0.823 5e-76
356533657 704 PREDICTED: histone-lysine N-methyltransf 0.993 0.225 0.817 9e-76
147864337 893 hypothetical protein VITISV_003700 [Viti 0.993 0.178 0.805 2e-75
225433249 859 PREDICTED: histone-lysine N-methyltransf 0.993 0.185 0.798 1e-74
356504119 677 PREDICTED: histone-lysine N-methyltransf 0.993 0.234 0.823 3e-74
296083721 517 unnamed protein product [Vitis vinifera] 0.993 0.307 0.798 3e-74
359488070 1037 PREDICTED: uncharacterized protein LOC10 0.987 0.152 0.803 4e-74
22330839 492 histone-lysine N-methyltransferase SUVR4 0.993 0.323 0.793 1e-73
17066863 488 Su(VAR)3-9-related protein 4 [Arabidopsi 0.993 0.325 0.793 2e-73
>gi|255561971|ref|XP_002521994.1| set domain protein, putative [Ricinus communis] gi|223538798|gb|EEF40398.1| set domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  294 bits (752), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 134/159 (84%), Positives = 146/159 (91%)

Query: 2   LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
           LQVF+T   KGWGLRTL+DLPKG+FVCEYVGEILTN ELY+RN+ SSGS+RHTYPVTLDA
Sbjct: 448 LQVFMTGEGKGWGLRTLEDLPKGTFVCEYVGEILTNMELYDRNLLSSGSDRHTYPVTLDA 507

Query: 62  DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
           DWGSE+ LRDEEALCLDATF GNVARFINHRC DANLIDIPVE+ETPDRHYYHLAFFT+R
Sbjct: 508 DWGSEKFLRDEEALCLDATFTGNVARFINHRCNDANLIDIPVEVETPDRHYYHLAFFTSR 567

Query: 122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDVK 160
            V+A EELTWDYGIDF DHDHPI+AF CCCGS+ CRDVK
Sbjct: 568 KVNALEELTWDYGIDFDDHDHPIEAFRCCCGSDSCRDVK 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574896|ref|XP_003555579.1| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Glycine max] Back     alignment and taxonomy information
>gi|356533657|ref|XP_003535377.1| PREDICTED: histone-lysine N-methyltransferase SUVR4-like [Glycine max] Back     alignment and taxonomy information
>gi|147864337|emb|CAN83006.1| hypothetical protein VITISV_003700 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433249|ref|XP_002282057.1| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504119|ref|XP_003520846.1| PREDICTED: histone-lysine N-methyltransferase SUVR4-like [Glycine max] Back     alignment and taxonomy information
>gi|296083721|emb|CBI23710.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488070|ref|XP_002263876.2| PREDICTED: uncharacterized protein LOC100261268 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22330839|ref|NP_187088.2| histone-lysine N-methyltransferase SUVR4 [Arabidopsis thaliana] gi|94730582|sp|Q8W595.2|SUVR4_ARATH RecName: Full=Histone-lysine N-methyltransferase SUVR4; AltName: Full=Protein SET DOMAIN GROUP 31; AltName: Full=Suppressor of variegation 3-9-related protein 4; Short=Su(var)3-9-related protein 4 gi|332640552|gb|AEE74073.1| histone-lysine N-methyltransferase SUVR4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|17066863|gb|AAL01113.2|AF408062_1 Su(VAR)3-9-related protein 4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
TAIR|locus:2100885492 SUVR4 [Arabidopsis thaliana (t 0.987 0.321 0.798 2.3e-71
TAIR|locus:2024229734 SUVR1 "homolog of SU(var)3-9 1 0.968 0.211 0.641 4.2e-56
TAIR|locus:2172502740 SUVR2 [Arabidopsis thaliana (t 0.943 0.204 0.621 1.9e-49
UNIPROTKB|F1NV79721 SETDB2 "Uncharacterized protei 0.593 0.131 0.421 1.2e-21
UNIPROTKB|F1N8V7727 SETDB2 "Uncharacterized protei 0.593 0.130 0.421 1.3e-21
UNIPROTKB|F1LVE4406 F1LVE4 "Uncharacterized protei 0.837 0.330 0.392 1.4e-21
UNIPROTKB|G3X6G5412 SUV39H1 "Histone-lysine N-meth 0.806 0.313 0.407 1.7e-21
UNIPROTKB|Q2NL30412 SUV39H1 "Histone-lysine N-meth 0.806 0.313 0.407 1.7e-21
UNIPROTKB|E2R289412 SUV39H1 "Uncharacterized prote 0.806 0.313 0.407 1.7e-21
UNIPROTKB|O43463412 SUV39H1 "Histone-lysine N-meth 0.806 0.313 0.407 1.7e-21
TAIR|locus:2100885 SUVR4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 127/159 (79%), Positives = 142/159 (89%)

Query:     2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
             LQV+ T   KGWGLRTLQDLPKG+F+CEY+GEILTNTELY+RN++SS SERHTYPVTLDA
Sbjct:   304 LQVYFTQEGKGWGLRTLQDLPKGTFICEYIGEILTNTELYDRNVRSS-SERHTYPVTLDA 362

Query:    62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
             DWGSE+ L+DEEALCLDAT CGNVARFINHRC DAN+IDIP+EIETPDRHYYH+AFFT R
Sbjct:   363 DWGSEKDLKDEEALCLDATICGNVARFINHRCEDANMIDIPIEIETPDRHYYHIAFFTLR 422

Query:   122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDVK 160
             DV A +ELTWDY IDF+D  HP+KAF CCCGSE CRD K
Sbjct:   423 DVKAMDELTWDYMIDFNDKSHPVKAFRCCCGSESCRDRK 461
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA;IDA
GO:0034968 "histone lysine methylation" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2024229 SUVR1 "homolog of SU(var)3-9 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172502 SUVR2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NV79 SETDB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8V7 SETDB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LVE4 F1LVE4 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3X6G5 SUV39H1 "Histone-lysine N-methyltransferase SUV39H1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NL30 SUV39H1 "Histone-lysine N-methyltransferase SUV39H1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R289 SUV39H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O43463 SUV39H1 "Histone-lysine N-methyltransferase SUV39H1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W595SUVR4_ARATH2, ., 1, ., 1, ., 4, 30.79370.99370.3231yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.737
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-30
pfam00856113 pfam00856, SET, SET domain 4e-25
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 1e-12
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  107 bits (268), Expect = 1e-30
 Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 17/139 (12%)

Query: 2   LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
           L+VF +   KGWG+R  +D+PKG F+ EYVGEI+T+ E  ER                  
Sbjct: 3   LEVFKSP-GKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYD-----------TD 50

Query: 62  DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
              +  +   +  LC+DA   GN+ARFINH C + N   + VE+   D     +  F  R
Sbjct: 51  GAKAFYLFDIDSDLCIDARRKGNLARFINHSC-EPNCELLFVEVNGDD----RIVIFALR 105

Query: 122 DVSASEELTWDYGIDFSDH 140
           D+   EELT DYG D+++ 
Sbjct: 106 DIKPGEELTIDYGSDYANE 124

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 160
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 100.0
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 99.97
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.96
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.92
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.88
KOG1085392 consensus Predicted methyltransferase (contains a 99.87
KOG11411262 consensus Predicted histone methyl transferase [Ch 99.83
COG2940480 Proteins containing SET domain [General function p 99.78
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.75
KOG2589 453 consensus Histone tail methylase [Chromatin struct 99.63
KOG1081463 consensus Transcription factor NSD1 and related SE 99.09
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.85
smart0050826 PostSET Cysteine-rich motif following a subset of 96.82
KOG2084 482 consensus Predicted histone tail methylase contain 95.97
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 94.86
KOG1337 472 consensus N-methyltransferase [General function pr 94.47
KOG2155 631 consensus Tubulin-tyrosine ligase-related protein 88.9
PF0866663 SAF: SAF domain; InterPro: IPR013974 This entry in 88.37
KOG1338 466 consensus Uncharacterized conserved protein [Funct 81.03
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-39  Score=260.55  Aligned_cols=135  Identities=37%  Similarity=0.661  Sum_probs=123.1

Q ss_pred             eEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCC-CCccceeeecCcccccccccCCccEEEecc
Q 037821            2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGS-ERHTYPVTLDADWGSERILRDEEALCLDAT   80 (160)
Q Consensus         2 l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~   80 (160)
                      ++||.+. +|||||+|.++|++|+||+||.||+++..+...|...|... ..+.|++.+.++            .+|||+
T Consensus       122 vevF~Te-~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~------------e~IDAT  188 (729)
T KOG4442|consen  122 VEVFLTE-KKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGG------------EYIDAT  188 (729)
T ss_pred             eeEEEec-CcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCC------------ceeccc
Confidence            5899996 89999999999999999999999999999999999988754 467777777775            799999


Q ss_pred             ccCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCCCCCCCeeeecCCCCccc
Q 037821           81 FCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRD  158 (160)
Q Consensus        81 ~~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~~~~~~~~C~C~~~~Cr~  158 (160)
                      ..||.+|||||||. |||....|.+.+.    ++|.|||.++|.+||||||||+.+..+.+    .-.|.||+++|||
T Consensus       189 ~KGnlaRFiNHSC~-PNa~~~KWtV~~~----lRvGiFakk~I~~GEEITFDYqf~rYGr~----AQ~CyCgeanC~G  257 (729)
T KOG4442|consen  189 KKGNLARFINHSCD-PNAEVQKWTVPDE----LRVGIFAKKVIKPGEEITFDYQFDRYGRD----AQPCYCGEANCRG  257 (729)
T ss_pred             ccCcHHHhhcCCCC-CCceeeeeeeCCe----eEEEEeEecccCCCceeeEeccccccccc----ccccccCCccccc
Confidence            99999999999996 9999999999874    59999999999999999999999987766    6799999999998

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins Back     alignment and domain information
>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 2e-25
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 2e-25
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 3e-25
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 1e-24
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 5e-24
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 5e-24
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 5e-19
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 2e-17
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 2e-15
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 2e-14
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 8e-14
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 1e-12
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 4e-10
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 5e-10
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 6e-04
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 7e-04
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 92/156 (58%), Gaps = 19/156 (12%)
Query: 2   LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
           LQ++ T R  GWG+R+LQD+P G+FVCEYVGE+++++E   R       E  +Y   LD 
Sbjct: 149 LQLYRT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------EEDSYLFDLDN 200
Query: 62  DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
                   +D E  C+DA F GNV+RFINH C + NL+ + V +   D  +  +AFF+TR
Sbjct: 201 --------KDGEVYCIDARFYGNVSRFINHHC-EPNLVPVRVFMAHQDLRFPRIAFFSTR 251
Query: 122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR 157
            + A E+L +DYG  F D     K F C CGS  CR
Sbjct: 252 LIEAGEQLGFDYGERFWDIKG--KLFSCRCGSPKCR 285
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 1e-56
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 6e-55
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 2e-51
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 3e-51
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 5e-51
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 2e-50
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 2e-49
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 2e-38
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 3e-33
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 7e-33
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 3e-23
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 3e-20
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 2e-18
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 6e-15
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 4e-13
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 3e-12
3db5_A151 PR domain zinc finger protein 4; methyltransferase 5e-11
3dal_A196 PR domain zinc finger protein 1; methyltransferase 9e-11
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 1e-10
3ray_A237 PR domain-containing protein 11; structural genomi 3e-05
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
 Score =  178 bits (453), Expect = 1e-56
 Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 20/166 (12%)

Query: 2   LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
           L++F T   KGWG+R+L+  P G+F+  Y+GE++T+ E  +R  ++   +  TY   LD 
Sbjct: 139 LEIFKTK-EKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKR-DKNYDDDGITYLFDLDM 196

Query: 62  DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
                    D     +DA   G+V+RF NH C   N+           R  Y LAFF  +
Sbjct: 197 FD-------DASEYTVDAQNYGDVSRFFNHSC-SPNIAIYSAVRNHGFRTIYDLAFFAIK 248

Query: 122 DVSASEELTWDYGIDFSDHD----------HPIKAFHCCCGSEFCR 157
           D+   EELT+DY                         C CGS  CR
Sbjct: 249 DIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCR 294
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 100.0
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.97
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.97
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.97
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.97
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.96
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.95
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.91
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.91
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.88
3ray_A237 PR domain-containing protein 11; structural genomi 99.8
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.76
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 99.22
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 99.22
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 99.19
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 97.93
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 97.7
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 97.49
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 94.74
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 94.22
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 93.56
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 92.6
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 90.38
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 88.26
1wvo_A79 Sialic acid synthase; antifreeze protein like doma 84.38
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.4e-42  Score=253.80  Aligned_cols=137  Identities=34%  Similarity=0.647  Sum_probs=120.4

Q ss_pred             eEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCCCccceeeecCcccccccccCCccEEEeccc
Q 037821            2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATF   81 (160)
Q Consensus         2 l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~   81 (160)
                      |+||++ +++||||||+++|++|++|+||.|++++.+++.++...........|.+.++..            ++||++.
T Consensus        76 lev~~t-~~kG~Gl~A~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~y~~~l~~~------------~~IDa~~  142 (222)
T 3ope_A           76 LERFRA-EEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDSG------------MVIDSYR  142 (222)
T ss_dssp             CEEEEC-TTSSEEEECSSCBCTTCEEEECCSEEECHHHHHHHHHHTSTTCCSCCEEEEETT------------EEEECSS
T ss_pred             EEEEEc-CCCceEEEECceECCCCEEEEecceecCHHHHHHHHHHHhcccCCeEEEecCCC------------EEEeCcc
Confidence            789988 579999999999999999999999999999998876655555566788777654            7999999


Q ss_pred             cCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCCCCCCCeeeecCCCCcccC
Q 037821           82 CGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDV  159 (160)
Q Consensus        82 ~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~~~~~~~~C~C~~~~Cr~~  159 (160)
                      .||++|||||||. ||+.+..+.+.+    .+++.|+|+|||++|||||+||+.++|...   +.+.|.||+++|||.
T Consensus       143 ~Gn~aRfiNHSC~-PN~~~~~~~~~~----~~~i~~~A~RdI~~GEELT~dY~~~~~~~~---~~~~C~CGs~~Crg~  212 (222)
T 3ope_A          143 MGNEARFINHSCD-PNCEMQKWSVNG----VYRIGLYALKDMPAGTELTYDYNFHSFNVE---KQQLCKCGFEKCRGI  212 (222)
T ss_dssp             EECGGGGCEECSS-CSEEEEEEEETT----EEEEEEEESSCBCTTCBCEECTTSSBCCCS---CCCBCCCCCTTCCSB
T ss_pred             ccccceeeccCCC-CCeEeEEEEECC----eEEEEEEECCccCCCCEEEEECCCcccCCc---CCCEeeCCCcCCCCc
Confidence            9999999999996 999998887654    369999999999999999999999988754   379999999999985
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 160
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 5e-30
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 2e-24
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 2e-24
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 5e-13
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score =  108 bits (270), Expect = 5e-30
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 12/160 (7%)

Query: 2   LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSER---HTYPVT 58
           LQ+F T + +GWG++   ++ +G FV  Y+GEI+T+ E   R  +S+ + R   + + + 
Sbjct: 127 LQIFRT-KDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALD 185

Query: 59  LDADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFF 118
             +D  S   L   + L +D  +     RFINH C D N+       +  D+H + LA F
Sbjct: 186 KFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSC-DPNMAIFARVGDHADKHIHDLALF 244

Query: 119 TTRDVSASEELTWDYG-------IDFSDHDHPIKAFHCCC 151
             +D+    ELT+DY         D  D     +   C C
Sbjct: 245 AIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.96
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.95
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 99.28
d1opsa_64 Type III antifreeze protein, AFP III {Ocean pout ( 87.45
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=100.00  E-value=1.3e-37  Score=234.62  Aligned_cols=148  Identities=30%  Similarity=0.539  Sum_probs=109.7

Q ss_pred             eEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhcc-CCCCccceeeecCcccc--cccccCCccEEEe
Q 037821            2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSS-GSERHTYPVTLDADWGS--ERILRDEEALCLD   78 (160)
Q Consensus         2 l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~id   78 (160)
                      ||||++ +.+||||||+++|++|++|+||.|++++..++.++...+. ....+.|.+.++.....  .........+.||
T Consensus       127 lev~kt-~~kG~Gv~a~~~I~kGt~I~eY~Gevi~~~ea~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~iD  205 (284)
T d1ml9a_         127 LQIFRT-KDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVD  205 (284)
T ss_dssp             EEEEEC-SSSCEEEECSSCBCTTCEEEECCCEEECHHHHHHHHHHSCGGGCHHHHEEECCSSCCSSSSCHHHHSCCCEEE
T ss_pred             EEEEEc-CCCceEEeeCCCcCCCCEEEEecCcccCHHHHHHHHHHHHhhccCCccceecccccccccccccccCCceeEe
Confidence            799987 5699999999999999999999999999999987766543 33345677766543221  1122334568999


Q ss_pred             ccccCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCCC-------CCCCeeeec
Q 037821           79 ATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDH-------PIKAFHCCC  151 (160)
Q Consensus        79 ~~~~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~~-------~~~~~~C~C  151 (160)
                      +...||++|||||||. ||+.+..+..+..++..++|+|+|+|||++|||||+||+..++....       ....+.|+|
T Consensus       206 a~~~GN~aRfiNHSC~-PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~C  284 (284)
T d1ml9a_         206 GEYMSGPTRFINHSCD-PNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC  284 (284)
T ss_dssp             CSSEECGGGGCEECSS-CSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred             eeeccchhheeecccc-CCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCCCCchhhcchhhcccCCceeeC
Confidence            9999999999999996 99999999888888888999999999999999999999988764321       223577887
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]} Back     information, alignment and structure