Citrus Sinensis ID: 037875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKKLLHFRKLP
Secondary Structure (PSIPRED)
cHHHHHHHHHHccHHHHcccccccccHHHHHHHcccHHHHHHHHHccccccHHHHcccccccccHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHccccccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccEEccccccEEEEEEEcccHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHcccHHcccccccccHHHHHHHHccHHHHHHHHHHcccccccccccHcEcccccEEEEHEEcccHHHHHHHHHHHcHHHHcccccccccHHHHHHcccccccccccccHHHHEEEHcccc
Coil and Loop (DISEMBL)
NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHatatssralpVADKLlrkapgllgmrnnngetalfrsarygkADIFNFlagkiadydqpskqpflqrndqstVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKKLLHFRKLP
Flexible Loop (DISEMBL)
NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHAtatssralpvaDKLLRkapgllgmrnnNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKkllhfrklp
Low Complexity Region (SEG)
NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKKLLHFRKLP
Disordered region (IsUnstruct)
****VIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYD*******L***DQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKKLLHF****
Disordered Region (DISOPRED)
NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKKLLHFRKLP
Disordered Region (DISEMBL)
NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKKLLHFRKLP
Disordered Region (DISPRO)
NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKKLLHFRKLP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFFKKLLHFRKLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q6GNY1	1011	E3 ubiquitin-protein liga	N/A	no	0.745	0.150	0.292	4e-05
D4A615	1367	Tonsoku-like protein OS=R	yes	no	0.588	0.087	0.307	0.0002
Q1RI31	559	Putative ankyrin repeat p	yes	no	0.588	0.214	0.338	0.0009

>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 19/171 (11%)

Query: 6   IEVCRKISDHALH--VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGN 63
           ++V +K+ D + H  +     DT LH A   KRDD+   LL+   ++ I      N  G 
Sbjct: 543 LQVVKKLLDFSCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTI-----TNNNGF 597

Query: 64  TVLHATATSSRALPVADKLLRKA---PGLLGMRNNNGETALFRSARYGKADIFNFLAGKI 120
             LH  A   R  P A ++L      P ++  + ++G TAL  +A     ++   L    
Sbjct: 598 NALHHAAL--RGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLV--- 652

Query: 121 ADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA-LEIAKEYKYLIGEKDMD 170
               Q S    +Q  +Q T LH+AV  QH ++  L +  E K  I +KD D
Sbjct: 653 ---HQGSANLDIQNVNQQTALHLAVERQHTQIVRLLVRAEAKLDIQDKDGD 700

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.
Xenopus laevis (taxid: 8355)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|D4A615|TONSL_RAT Tonsoku-like protein OS=Rattus norvegicus GN=Tonsl PE=3 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 52  IHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKAD 111
           I+K  R+N  G T+LH      +   V D + +  P  L  R+  G T L  +  YG  +
Sbjct: 519 INKWNRRNDMGETLLHRACIEGQLRRVQDLVKQGHP--LNPRDYCGWTPLHEACNYGHLE 576

Query: 112 IFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDG 171
           I  FL    A  D P  Q      D  T LH A+   HFE+A E+  E    +  +   G
Sbjct: 577 IVRFLLDHGAAVDDPGGQGC----DGITPLHDALNCGHFEVA-ELLIERGASVTLRTRKG 631

Query: 172 MTALQLL 178
           ++ L+ L
Sbjct: 632 LSPLETL 638

Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. The MMS22L-TONSL complex is required to maintain genome integrity during DNA replication by promoting homologous recombination-mediated repair of replication fork-associated double-strand breaks. It may act by mediating the assembly of RAD51 filaments on ssDNA. Within the complex, may act as a scaffold.

Rattus norvegicus (taxid: 10116)

>sp|Q1RI31|Y902_RICBR Putative ankyrin repeat protein RBE_0902 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0902 PE=4 SV=1

 Score = 43.5 bits (101), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 22/142 (15%)

Query: 11  KISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQ-----NKAGNTV 65
           K+++  ++ LT ++DTVL +A        A K L +I E+ I KMT Q     NK GNT 
Sbjct: 216 KMTEQTINQLTDNNDTVLTLA--------ANKSLGKICEILIPKMTDQAINQVNKDGNTA 267

Query: 66  LHATATSSRALPVADKLLRK-APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYD 124
           L A A SS    + + L+ K +   +   NN G TAL  +A  G   +   L  K+    
Sbjct: 268 LIA-AASSHLEKICEALIPKMSDQAINHINNYGNTALIAAASSGLEKVCETLIPKM---- 322

Query: 125 QPSKQPFLQRNDQS-TVLHMAV 145
             ++Q   Q N Q  T L  AV
Sbjct: 323 --TEQAINQANHQCDTALIFAV 342

Rickettsia bellii (strain RML369-C) (taxid: 336407)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
224115940	581	predicted protein [Populus trichocarpa]	0.955	0.335	0.630	7e-71
224115932	581	predicted protein [Populus trichocarpa]	0.955	0.335	0.625	8e-71
224115928	280	predicted protein [Populus trichocarpa]	0.955	0.696	0.594	3e-65
224115944	579	predicted protein [Populus trichocarpa]	0.779	0.274	0.603	1e-52
224115930	551	predicted protein [Populus trichocarpa]	0.779	0.288	0.597	2e-51
359496242	255	PREDICTED: uncharacterized protein LOC10	0.970	0.776	0.431	1e-39
359475714	255	PREDICTED: uncharacterized protein LOC10	0.970	0.776	0.426	4e-39
296086780	687	unnamed protein product [Vitis vinifera]	0.970	0.288	0.416	3e-37
224087973	139	predicted protein [Populus trichocarpa]	0.534	0.784	0.669	6e-37
302143775	253	unnamed protein product [Vitis vinifera]	0.970	0.782	0.421	3e-34

>gi|224115940|ref|XP_002317166.1| predicted protein [Populus trichocarpa] gi|222860231|gb|EEE97778.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 164/195 (84%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK 60
           N+K V+++C++ISDHALHV+TV+DDTVLHMATY K   L  +LLDE+P+ ++ K+TRQN+
Sbjct: 27  NKKDVVDLCQRISDHALHVITVNDDTVLHMATYAKEAALVERLLDELPDHHVDKLTRQNR 86

Query: 61  AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI 120
            GNT+LH TATS  AL VADKLL++APGLLGMRN+NGETALFR+ARYGK D+FNFLA K+
Sbjct: 87  VGNTILHETATSKHALAVADKLLKRAPGLLGMRNHNGETALFRAARYGKTDMFNFLAAKV 146

Query: 121 ADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC 180
           + YD+   Q ++QR+D++T+LH+A++S+HF+LA +IA +Y++LI EKD DGMT+LQLLSC
Sbjct: 147 SGYDEAGLQFYVQRSDKTTILHIAILSEHFDLAYQIALDYRHLISEKDGDGMTSLQLLSC 206

Query: 181 KPEAFKLKQERGFFK 195
            P AFK + E GF K
Sbjct: 207 NPSAFKQEPEDGFIK 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115932|ref|XP_002317164.1| predicted protein [Populus trichocarpa] gi|222860229|gb|EEE97776.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 165/195 (84%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK 60
           N+K V+++C++ISDHALHV+TV+DDTVLHMATY K   L  +LLDE+P+ ++ K+TRQN+
Sbjct: 27  NKKDVVDLCQRISDHALHVITVNDDTVLHMATYAKEAALVERLLDELPDHHVDKLTRQNR 86

Query: 61  AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI 120
            GNT+LH TATS+ A+ VADKLL++APGLLGMRN+NGETALFR+ARYGK D+FNFLA K+
Sbjct: 87  VGNTILHETATSNHAISVADKLLKRAPGLLGMRNHNGETALFRAARYGKTDMFNFLAAKV 146

Query: 121 ADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC 180
           + YD+   Q ++QR+D++T+LH+A++S+HF+LA +IA +Y++LI EKD DGMT+LQLLSC
Sbjct: 147 SGYDEAGLQFYVQRSDKTTILHIAILSEHFDLAYQIALDYRHLISEKDGDGMTSLQLLSC 206

Query: 181 KPEAFKLKQERGFFK 195
            P AFK + E GF K
Sbjct: 207 NPSAFKQEPEDGFIK 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115928|ref|XP_002317162.1| predicted protein [Populus trichocarpa] gi|222860227|gb|EEE97774.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 154/195 (78%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK 60
           N K V ++C ++ DHALHV+TV DDTVLHMATY K   L  +LLDE+P+ ++ K+TRQN 
Sbjct: 81  NTKSVADLCLRLQDHALHVITVTDDTVLHMATYAKEASLVEQLLDELPDHHLDKLTRQNG 140

Query: 61  AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI 120
            GNT+LH TATS+  + VA KLL+KAPGLLGMRN+NGETALFR+ARYGK D+F+FLA K+
Sbjct: 141 VGNTILHETATSNHTVAVARKLLKKAPGLLGMRNHNGETALFRAARYGKTDMFDFLAAKV 200

Query: 121 ADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC 180
             YD+   Q ++QR+D++T+LHMA++S HF+LA +IA +Y++LIG++D DGMT LQ+LSC
Sbjct: 201 CGYDESGLQFYVQRSDKTTILHMAILSLHFDLAYQIASKYEHLIGQRDGDGMTGLQILSC 260

Query: 181 KPEAFKLKQERGFFK 195
            P  FK + E GF K
Sbjct: 261 NPSVFKQEPEDGFIK 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115944|ref|XP_002317167.1| predicted protein [Populus trichocarpa] gi|222860232|gb|EEE97779.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/159 (60%), Positives = 130/159 (81%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK 60
           N+ +V E+C+KI DHALHV+TV+DDTVLHMATY K   L  KLLDE+P+ ++ K+TRQN+
Sbjct: 30  NKNRVAELCQKIQDHALHVITVNDDTVLHMATYAKEASLVEKLLDELPDHHLDKLTRQNR 89

Query: 61  AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI 120
            GNT+LH TATS+  + +ADKLL+KAPGLLGMRN+NGETALFR+ARYGK D+FNFLA K+
Sbjct: 90  VGNTILHETATSNHTVALADKLLKKAPGLLGMRNHNGETALFRAARYGKTDMFNFLAAKV 149

Query: 121 ADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE 159
           + YD+   Q ++QR+D++T+LHMA++S HF    ++ K+
Sbjct: 150 SGYDESGLQFYVQRSDKTTILHMAILSLHFVWREKVQKQ 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115930|ref|XP_002317163.1| predicted protein [Populus trichocarpa] gi|222860228|gb|EEE97775.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 127/159 (79%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK 60
           N+K+V E+C+KI DHALHV+TV+DDTVLHMATY K   L   LLD +P  ++ K+TRQN 
Sbjct: 30  NKKRVAELCQKIQDHALHVITVNDDTVLHMATYAKEASLVENLLDALPSHHLDKLTRQNG 89

Query: 61  AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI 120
            GNT+LH TATS+  + +ADKLL+KAPGLLGMRN+NGETALFR+ARYGK D+FNFLA K+
Sbjct: 90  VGNTILHETATSNHTVALADKLLKKAPGLLGMRNHNGETALFRAARYGKTDMFNFLAAKV 149

Query: 121 ADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE 159
           + YD+   Q ++QR+D++T+LHMA++S HF    ++ K+
Sbjct: 150 SGYDESGLQFYVQRSDKTTILHMAILSLHFVWREKVQKQ 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496242|ref|XP_003635190.1| PREDICTED: uncharacterized protein LOC100854509 [Vitis vinifera]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/204 (43%), Positives = 134/204 (65%), Gaps = 6/204 (2%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMT-RQN 59
           ++KKV ++C    +  L  ++V++DTVLHMA+ FKR  L   LL+ +P+   H++   +N
Sbjct: 22  DDKKVTQLCSSHPEGPLQRISVYNDTVLHMASRFKRSKLVRDLLEMLPKECNHELAATKN 81

Query: 60  KAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAG- 118
            AG+ +LH  A S     VA+ +L++ P LL  RN+ GET +F +ARYG+ ++F FLAG 
Sbjct: 82  NAGSNILHEVAASDTMKDVAEGMLKRGPELLIARNDLGETPIFCAARYGQTEMFKFLAGE 141

Query: 119 -KIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL 177
            K+ + +    + +LQRND++TVLH+++ ++ FELA  IA+ Y YLI E+D D MTALQ 
Sbjct: 142 MKLMERNPEEGKHYLQRNDRTTVLHISIFTECFELAHFIAESYSYLIEERDQDSMTALQY 201

Query: 178 LSCKPEAF---KLKQERGFFKKLL 198
           L+C P AF   K+K  RGF  +L+
Sbjct: 202 LACNPTAFEKKKIKTRRGFMDELM 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475714|ref|XP_003631736.1| PREDICTED: uncharacterized protein LOC100852691 [Vitis vinifera]

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 132/204 (64%), Gaps = 6/204 (2%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMT-RQN 59
           ++KKV ++C    +  L  ++V++DTVLHMA+ FKR  L   LL+ +P+   H++   +N
Sbjct: 22  DDKKVTQLCSSHREGPLQRISVYNDTVLHMASRFKRSKLVRDLLEMLPKECNHELAATKN 81

Query: 60  KAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAG- 118
            AG+ +LH  A S     VA+ +L++ P LL  RN+ GET  F +ARYG+ ++F FLAG 
Sbjct: 82  NAGSNILHEVAASDTMKDVAEGMLKRGPELLIARNDLGETPFFCAARYGQTEMFKFLAGE 141

Query: 119 -KIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL 177
            K+ + +    + +LQRND++TVLH+++ ++ FELA  IA+ Y YLI E+D D MT LQ 
Sbjct: 142 MKLTERNPEDGKHYLQRNDRTTVLHISIFTECFELAHFIAESYSYLIEERDQDSMTTLQY 201

Query: 178 LSCKPEAF---KLKQERGFFKKLL 198
           L+C P AF   K+K  RGF  +L+
Sbjct: 202 LACNPTAFEKKKIKTRRGFMDELM 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086780|emb|CBI32929.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 135/204 (66%), Gaps = 6/204 (2%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMT-RQN 59
           ++KKV ++C    +  L  ++V++DTVLHMA+ FKR  L   LL+ +P+   H++   +N
Sbjct: 24  DDKKVTQLCSSHREGPLQRISVYNDTVLHMASRFKRSKLVRDLLEMLPKERNHELAATKN 83

Query: 60  KAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGK 119
            AG+ +LH  A S     VA+++L++   LL   N+ GET +F +ARYG+ ++F FLAGK
Sbjct: 84  NAGSNILHEVAASDTMKDVAEEMLKRDSELLIAPNDLGETPIFCAARYGQTEMFKFLAGK 143

Query: 120 IA--DYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL 177
           +   + +    + +LQR+D++TVLH++++++ FELA  IA+ Y YLI E+D D MTALQ 
Sbjct: 144 MGLTELNPEEGKHYLQRDDRTTVLHISILTECFELAHFIAESYSYLIEERDPDSMTALQY 203

Query: 178 LSCKPEAF---KLKQERGFFKKLL 198
           L+C P AF   K+K  RGF ++L+
Sbjct: 204 LACNPTAFEKKKIKTRRGFMEELM 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087973|ref|XP_002335116.1| predicted protein [Populus trichocarpa] gi|222832892|gb|EEE71369.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 93/109 (85%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK 60
           N+ +V E+C+KI DHALHV+TV+DDTVLHMATY K   L  KLLDE+P+ ++ K+TRQN+
Sbjct: 30  NKNRVAELCQKIQDHALHVITVNDDTVLHMATYAKEASLVEKLLDELPDHHLDKLTRQNR 89

Query: 61  AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGK 109
            GNT+LH TATS+  + +ADKLL++APGLLGMRN+NGETALFR+ARYGK
Sbjct: 90  VGNTILHETATSNHTVAIADKLLKRAPGLLGMRNHNGETALFRAARYGK 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143775|emb|CBI22636.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 134/204 (65%), Gaps = 6/204 (2%)

Query: 2   EKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTR-QNK 60
           +K+V  VCR + +  L  +  ++DTVLHMA + ++ DL L+LL  +P    H +   +N 
Sbjct: 25  DKEVTRVCRDLPEGPLRRIGANNDTVLHMAAHSEQSDLVLELLKLLPGNRSHGLVDIKNN 84

Query: 61  AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI 120
           AG+T+LH  ATS   + V +K+L++  GLL ++N++GE  +F +ARYG+  +F FLA K+
Sbjct: 85  AGDTILHEVATSDNMIGVGEKVLKRDEGLLFVQNDSGEMPIFCAARYGQIVMFMFLADKM 144

Query: 121 ADYDQPSK--QPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLL 178
               + S+  +  LQRND +TVLH++++++ FELA  IA+ Y YLI E+D D MTALQ L
Sbjct: 145 ELKKRSSEDGKRHLQRNDGTTVLHISIVTECFELAHLIAESYPYLIEERDQDSMTALQYL 204

Query: 179 SCKPEAF---KLKQERGFFKKLLH 199
           +C P  F   K+K  RGF ++L++
Sbjct: 205 ACNPTVFGRQKVKMRRGFVEELIN 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2082344	664	AT3G01750 [Arabidopsis thalian	0.808	0.248	0.301	2e-06
ASPGD|ASPL0000075867	855	AN8767 [Emericella nidulans (t	0.759	0.181	0.297	1.6e-05
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.686	0.211	0.322	2.8e-05
ZFIN|ZDB-GENE-070615-8	489	ankdd1a "ankyrin repeat and de	0.774	0.323	0.265	4.2e-05
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.696	0.226	0.307	4.6e-05
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.686	0.257	0.316	8.7e-05
UNIPROTKB|F1P6V7	835	TNNI3K "Uncharacterized protei	0.686	0.167	0.246	0.00021
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.730	0.260	0.265	0.00021
POMBASE|SPAC6C3.08	234	SPAC6C3.08 "proteasome regulat	0.553	0.482	0.278	0.0003
UNIPROTKB|F1NSA9	954	MIB2 "E3 ubiquitin-protein lig	0.764	0.163	0.276	0.00041

TAIR|locus:2082344 AT3G01750 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 56/186 (30%), Positives = 87/186 (46%)

Query:    12 ISDHAL-HVLTVHD---DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLH 67
             +SD ++ HVL   D    T+LH A    +  +  +L   +   Y H +   +  GNT LH
Sbjct:   209 LSDCSVEHVLAFRDKQGSTILHSAAGKGKTQVVKEL---VASSY-HLVDAVDNQGNTALH 264

Query:    68 ATATSSRALPVADKLLRKAPGLLGMRNNNGETAL------FRSARYGKADIFNFLAGK-I 120
               A    A  + D L+  +P L+  RNN G+T L      F++  + + D    L  + I
Sbjct:   265 VAAYRGHA-DLVDVLISASPSLISARNNAGDTFLHAGISGFQTPAFERLDKHTELMNRLI 323

Query:   121 ADYDQPSKQPFLQ-RNDQS-TVLHMAVISQHFELA-LEIAKEYKYL-IGEKDMDGMTALQ 176
                   S+  F+  RN++  T LH+A IS +  L  +E+    K + I  +D  GMT L 
Sbjct:   324 TSAASKSQGDFVNYRNNEGRTALHLA-ISGNVPLEFVEMLMSVKSIDINIRDNAGMTPLD 382

Query:   177 LLSCKP 182
             L+  KP
Sbjct:   383 LIRQKP 388

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000075867 AN8767 [Emericella nidulans (taxid:162425)]

 Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 52/175 (29%), Positives = 83/175 (47%)

Query:     6 IEVCRKISDHALHVLTVHDD--TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGN 63
             +E+   + +H   + +V ++  T LH A   +R+D+A  LL+   +        Q+  G+
Sbjct:   638 LELMNVLMEHGAEIDSVTEEGATPLHQAIINEREDIAEVLLEHGAD-----PEAQDSHGD 692

Query:    64 TVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADY 123
               LH  A S R   +A+ LL K   +  + N  G+T L ++A  G   +  FL  + A  
Sbjct:   693 APLHFAAASGRR-KMAELLLDKGVDI-DITNYTGDTPLHKAASNGHRKMVEFLLSRGATL 750

Query:   124 DQPSKQPFLQRND-QSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL 177
             +         RND + T LH AV ++H  L L + ++   L   KDM G TAL L
Sbjct:   751 EI--------RNDYRQTPLHKAVGAKHHILRLLVNRDADVLA--KDMYGKTALHL 795

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 50/155 (32%), Positives = 70/155 (45%)

Query:    29 HMATYFKRDDL-ALK-LLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKA 86
             H+A   K+  L  LK LL+  P L    MT       T LH  AT    + V + LL   
Sbjct:   229 HVAA--KQGHLEVLKILLETFPNL---AMTTDLSC-TTALHTAATQGH-IDVVNLLLETD 281

Query:    87 PGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVI 146
               L  +  NNG+TAL  +AR G  ++   L GK      PS      +  Q T LHMAV 
Sbjct:   282 SNLAKIAKNNGKTALHSAARMGHVEVVKSLIGK-----DPSIGFRTDKKGQ-TALHMAVK 335

Query:   147 SQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK 181
              Q+  + +E+ K    ++  +D  G T L + + K
Sbjct:   336 GQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNK 370

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-070615-8 ankdd1a "ankyrin repeat and death domain containing 1A" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 46/173 (26%), Positives = 78/173 (45%)

Query:    13 SDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYI-----HKMTRQNKAGNTVLH 67
             S+ AL +L  HD  V  M ++     L       +  L I      K+T +NK G  +LH
Sbjct:    60 SEQALRLLLDHDMDVDDMDSFGMNALLLAAWFGHLTILKILVSTGAKLTTENKNGLNLLH 119

Query:    68 ATATSSRALPVADKLLRKAPGL-LGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQP 126
               A     + + + ++     + L    N+G+TA   +A +G  ++  FL G    ++  
Sbjct:   120 CAAQRGH-ITILEYIMEDLENVQLNKVENSGKTAFHLAAEHGHLEVVEFLIGMGCAHNLK 178

Query:   127 SKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS 179
              K         +T LH+A    H ++  +I +  +  I E+++DGMTAL L S
Sbjct:   179 DKHG-------NTALHLAAKQGHSDVLQKIMETGEN-IDERNIDGMTALHLAS 223

GO:0007165 "signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 47/153 (30%), Positives = 66/153 (43%)

Query:    29 HMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPG 88
             H+A      +   KLL+  P L    MT  + +  T LH TA S     V + LL+    
Sbjct:   193 HVAAKQGHIEALKKLLETFPNL---AMT-VDLSCTTALH-TAASQGHTDVVNLLLKTDSH 247

Query:    89 LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQ 148
             L  +  NNG+TAL  +AR G  ++   L G  A         F       T LHMAV  Q
Sbjct:   248 LAKIAKNNGKTALHSAARMGHREVVKSLIGNDASIG------FRTDKKGQTALHMAVKGQ 301

Query:   149 HFELALEIAKEYKYLIGEKDMDGMTALQLLSCK 181
             +  + LE+ K    ++  +D  G T L   + K
Sbjct:   302 NEGIVLELVKPDPAILSVEDSKGNTPLHTATNK 334

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 49/155 (31%), Positives = 71/155 (45%)

Query:    29 HMATYFKRDDL-ALKLLDEI-PELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKA 86
             H+A   K+ DL  LK+L E   EL    MT  + +  T LH  AT      V + LL   
Sbjct:   106 HIAA--KQGDLDVLKVLAEAHSEL---AMT-VDLSNTTALHTAATQGHT-EVVNFLLELG 158

Query:    87 PGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVI 146
               L G+  +NG+TAL  ++R G   +   L        +P+    + +  Q T LHMAV 
Sbjct:   159 SSLAGIAKSNGKTALHSASRNGHVKVIKALLAS-----EPAIAIRMDKKGQ-TALHMAVK 212

Query:   147 SQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK 181
               + E+  E+ K  +  I   D  G TAL + + K
Sbjct:   213 GTNVEVVEELIKADRSSINIADTKGNTALHIAARK 247

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1P6V7 TNNI3K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
 Identities = 36/146 (24%), Positives = 67/146 (45%)

Query:    18 HVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALP 77
             HV+ ++ DT LH+A Y  + ++A +++ +I    I  MT++N    T  H+  T  +++ 
Sbjct:   264 HVVNIYGDTPLHLACYNGKFEVAKEII-QISG--IESMTKENIFSETAFHSACTYGKSID 320

Query:    78 VADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQ--RN 135
             +   LL +    +  +  +G T L  +  +G   +  FL    AD +  +  P       
Sbjct:   321 LVKFLLDQNVISINHQGRDGHTGLHSACYHGHIRLVQFLLDNGADMNLVACDPSRSSGEK 380

Query:   136 DQSTVLHMAVISQHFELALEIAKEYK 161
             D+ T L  A    H +  + + K YK
Sbjct:   381 DEQTCLMWAYEKGH-DAIVTLLKHYK 405

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 43/162 (26%), Positives = 72/162 (44%)

Query:    26 TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
             T LH A      ++  K+L EI E    ++   NK G T LH  A    ++P+  +   K
Sbjct:   186 TPLHHACNANNLEIT-KMLLEIDESLAERV---NKDGFTPLHLAAMKC-SIPILKEFSDK 240

Query:    86 APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ--STVLHM 143
             AP    +     ET    +A +     F F+A      + P +   L + D+  +TVLH 
Sbjct:   241 APRYFDILTPAKETVFHLAAEHKNILAFYFMA------ESPDRNNLLHQVDRYGNTVLHT 294

Query:   144 AVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAF 185
             AV+S  + + + I  E    +  K+  G+ A+ L++   E +
Sbjct:   295 AVMSSCYSVIVSITYETTIDLSAKNNRGLKAVDLINVDDEDY 336

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC6C3.08 SPAC6C3.08 "proteasome regulatory particle, gankyrin (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 34/122 (27%), Positives = 55/122 (45%)

Query:    56 TRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNF 115
             T   + G T LH  A   R L +   L  KAP L+  ++  G+T L R+A  GK  +  +
Sbjct:   101 TITTRGGQTCLHYAAGKGR-LSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKY 159

Query:   116 LAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTAL 175
             L  + A  +      F       T LH A+   H ++ +E+ +     +  KD +  TAL
Sbjct:   160 LISQRAPLNTSDSYGF-------TPLHFALAEGHPDVGVELVRAGADTL-RKDSENHTAL 211

Query:   176 QL 177
             ++
Sbjct:   212 EV 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005838 "proteasome regulatory particle" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=NAS

UNIPROTKB|F1NSA9 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 0.00041, P = 0.00041
 Identities = 47/170 (27%), Positives = 74/170 (43%)

Query:    23 HDDTVLHMATYFKRD-DLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK 81
             H DT LH A     D  + +++L E+P +     T QN  G  +LH +A     L +  K
Sbjct:   563 HGDTPLHYA--ITADYKVIIEILTEVPNI---DFTVQNCQGFNLLHYSALKGNKLAIK-K 616

Query:    82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL 141
             +L +A  L+  +  +G TAL  +A     ++   L  K    D   K      N   T L
Sbjct:   617 ILARARQLVDSKKEDGFTALHLAALNNHKEVAEILI-KEGRCDVNVKN-----NRNQTPL 670

Query:   142 HMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQER 191
             H+A+I  H  L   +  E   +  E D DG TA+ +   + +   +  E+
Sbjct:   671 HLAIIQGHVGLVQLLVSEGSDVNAE-DEDGDTAMHIALERQQLMSVLMEK 719

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XI000157 hypothetical protein (581 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 14/131 (10%)

Query: 23  HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
              T LH+A      ++   LL+   ++       ++  G T LH  A  +  L +   L
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGADVNA-----KDNDGRTPLH-LAAKNGHLEIVKLL 59

Query: 83  LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLH 142
           L K    +  R+ +G T L  +AR G  D+   L    AD          +  D  T LH
Sbjct: 60  LEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-------VNARDKDGRTPLH 111

Query: 143 MAVISQHFELA 153
           +A  + H E+ 
Sbjct: 112 LAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 10/120 (8%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLA 117
           +++ G T LH  A S+  L V   LL      +  ++N+G T L  +A+ G  +I   L 
Sbjct: 3   RDEDGRTPLHL-AASNGHLEVVKLLLENGA-DVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 118 GKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL 177
            K AD +        +  D +T LH+A  + + ++ +++  ++   +  +D DG T L L
Sbjct: 61  EKGADVN-------ARDKDGNTPLHLAARNGNLDV-VKLLLKHGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 92  MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFE 151
            R+ +G T L  +A  G  ++   L    AD          + ND  T LH+A  + H E
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-------VNAKDNDGRTPLHLAAKNGHLE 54

Query: 152 LALEIAKEYKYLIGEKDMDGMTALQL 177
           + +++  E    +  +D DG T L L
Sbjct: 55  I-VKLLLEKGADVNARDKDGNTPLHL 79

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 23  HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
              T LH+A      ++   LL++  ++       ++K GNT LH  A  +  L V   L
Sbjct: 39  DGRTPLHLAAKNGHLEIVKLLLEKGADVNA-----RDKDGNTPLHL-AARNGNLDVVKLL 92

Query: 83  LRKAPGLLGMRNNNGETALFRSARYGKADIFNFL 116
           L K    +  R+ +G T L  +A+ G  ++   L
Sbjct: 93  L-KHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDD--TVLHMATYFKRD-----DLALKLLDEIPELYIH 53
             K   ++ + +      V     D  T LH+A           ++A  LL+   +L ++
Sbjct: 81  ASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN 140

Query: 54  KMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIF 113
               +++ GNT LH  A +  A     +LL +A      RN+ G TAL  +A+ G+ ++ 
Sbjct: 141 --NLRDEDGNTPLHWAALNGDAD--IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELV 196

Query: 114 NFL 116
             L
Sbjct: 197 KLL 199

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02917	661	ankyrin-like protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02989	494	ankyrin repeat protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02798	489	ankyrin-like protein; Provisional	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.81
PHA02792	631	ankyrin-like protein; Provisional	99.79
PHA02792	631	ankyrin-like protein; Provisional	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
KOG0514	452	consensus Ankyrin repeat protein [General function	99.76
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.75
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.61
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.58
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.5
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.36
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.94
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.94
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.92
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.81
PF13606	30	Ank_3: Ankyrin repeat	98.79
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.78
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.77
PF13606	30	Ank_3: Ankyrin repeat	98.77
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.76
KOG0522	560	consensus Ankyrin repeat protein [General function	98.7
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.69
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.66
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.49
KOG0522	560	consensus Ankyrin repeat protein [General function	98.49
KOG0511	516	consensus Ankyrin repeat protein [General function	98.37
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.25
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.03
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.02
KOG0511	516	consensus Ankyrin repeat protein [General function	97.94
KOG2384	223	consensus Major histocompatibility complex protein	97.93
KOG2384	223	consensus Major histocompatibility complex protein	97.86
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.7
KOG2505	591	consensus Ankyrin repeat protein [General function	97.69
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.36
KOG2505	591	consensus Ankyrin repeat protein [General function	97.14
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.85
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.82
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.69
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.33
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.94
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.92
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.57
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	82.93

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.5e-33  Score=184.44  Aligned_cols=162  Identities=23%  Similarity=0.217  Sum_probs=145.4

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhh-CCCccccccCCCC
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK-APGLLGMRNNNGE   98 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~   98 (204)
                      +|.+|.||||+||..|+.+++++|+++    -+..++.+|..|-||||+|+..|+ .++|+.|+.+ ++ +++..+..|.
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq----~nv~~ddkDdaGWtPlhia~s~g~-~evVk~Ll~r~~a-dvna~tn~G~  107 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQ----PNVKPDDKDDAGWTPLHIAASNGN-DEVVKELLNRSGA-DVNATTNGGQ  107 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhc----CCCCCCCccccCCchhhhhhhcCc-HHHHHHHhcCCCC-CcceecCCCc
Confidence            355899999999999999999999973    334588899999999999999999 8999999998 55 9999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHh
Q 037875           99 TALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLL  178 (204)
Q Consensus        99 t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a  178 (204)
                      |+||||+..|..++.++|++.|+.++.       +|..|.||||-|+..|..+++++|+. +|+.+|.+|+.|+||||.|
T Consensus       108 T~LHyAagK~r~eIaqlLle~ga~i~~-------kD~~~qtplHRAAavGklkvie~Li~-~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  108 TCLHYAAGKGRLEIAQLLLEKGALIRI-------KDKQGQTPLHRAAAVGKLKVIEYLIS-QGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             ceehhhhcCChhhHHHHHHhcCCCCcc-------cccccCchhHHHHhccchhhHHHHHh-cCCCCCcccccCccHHHHH
Confidence            999999999999999999999998887       58999999999999999999999999 7999999999999999999


Q ss_pred             c--cCCcchhhhhhccchh
Q 037875          179 S--CKPEAFKLKQERGFFK  195 (204)
Q Consensus       179 ~--~~~~~~~~~~~~g~~~  195 (204)
                      .  ..++....+...|+..
T Consensus       180 l~e~~~d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  180 LAEGHPDVAVLLVRAGADT  198 (226)
T ss_pred             HhccCchHHHHHHHhccce
Confidence            4  5567777777777543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-31  Score=197.96  Aligned_cols=180  Identities=15%  Similarity=0.085  Sum_probs=116.8

Q ss_pred             HHHHHHhhhccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhh
Q 037875            6 IEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK   85 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~   85 (204)
                      .+++++|+++|.+..+.+|.||||+|+..|+.+++++|++.|++     ++..  .|.||||+|+..++ .+++++|+..
T Consensus        12 ~~~~~~Lis~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~-----~n~~--d~~TpLh~Aa~~g~-~eiV~lLL~~   83 (284)
T PHA02791         12 KQLKSFLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGAL-----KNLL--ENEFPLHQAATLED-TKIVKILLFS   83 (284)
T ss_pred             HHHHHHHHhCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC-----CcCC--CCCCHHHHHHHCCC-HHHHHHHHHC
Confidence            45666667766666666677777777777777777777765544     3332  24566666666665 5666666666


Q ss_pred             CCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCC-------------------------ccccC-CCCcc
Q 037875           86 APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQ-------------------------PFLQR-NDQST  139 (204)
Q Consensus        86 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~-------------------------~~~~~-~~g~t  139 (204)
                      ++ +++.++..|.||||+|+..|+.+++++|+++|++++.....                         ++..+ ..|.|
T Consensus        84 Ga-dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~T  162 (284)
T PHA02791         84 GM-DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS  162 (284)
T ss_pred             CC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCcc
Confidence            55 55556666666666666666666666666666555432100                         00112 24788


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCH-hHHhccC--Ccchhhhhhccchh
Q 037875          140 VLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTA-LQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       140 ~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~-l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      |||+|+..|+.++++.|++ +|++++.++..|.|| ||+|+.+  .++.++++..|..-
T Consensus       163 pLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        163 CIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            8888888888888888888 688888888888876 8888744  46777777777553

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.4e-30  Score=174.07  Aligned_cols=159  Identities=26%  Similarity=0.351  Sum_probs=142.6

Q ss_pred             HHHHHHHhhh-ccccc--cccCCchHHHHHHhcCChHHHHHHHhh-CchhhhhhhcccccCCCcHHHHHHhcCCCHHHHH
Q 037875            5 VIEVCRKISD-HALHV--LTVHDDTVLHMATYFKRDDLALKLLDE-IPELYIHKMTRQNKAGNTVLHATATSSRALPVAD   80 (204)
Q Consensus         5 ~~~~~~~l~~-~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~   80 (204)
                      ..+++.+|++ -+..+  .|..|.||||+||..|+.++|+.|+.+ |++     +|..+..|.|+||+|+..+. .+++.
T Consensus        50 ~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-----vna~tn~G~T~LHyAagK~r-~eIaq  123 (226)
T KOG4412|consen   50 HVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-----VNATTNGGQTCLHYAAGKGR-LEIAQ  123 (226)
T ss_pred             chhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-----cceecCCCcceehhhhcCCh-hhHHH
Confidence            4677888885 23333  456799999999999999999999998 666     89999999999999999999 89999


Q ss_pred             HHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHh
Q 037875           81 KLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEY  160 (204)
Q Consensus        81 ~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  160 (204)
                      +|+..|+ .++.+|..|.||||.|+.-|..+++++|+..|+.+|.       +|..|+||||.|...|+.+.+..|+. .
T Consensus       124 lLle~ga-~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~-------qDk~G~TpL~~al~e~~~d~a~lLV~-~  194 (226)
T KOG4412|consen  124 LLLEKGA-LIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT-------QDKYGFTPLHHALAEGHPDVAVLLVR-A  194 (226)
T ss_pred             HHHhcCC-CCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc-------ccccCccHHHHHHhccCchHHHHHHH-h
Confidence            9999997 8999999999999999999999999999999988776       79999999999999999999977777 6


Q ss_pred             chhhcccCCCCCCHhHHhc
Q 037875          161 KYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       161 g~~~~~~~~~g~t~l~~a~  179 (204)
                      |++++..|+.| ||+..++
T Consensus       195 gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  195 GADTDREDKEG-TALRIAC  212 (226)
T ss_pred             ccceeeccccC-chHHHHH
Confidence            99999999988 9988775

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=202.34  Aligned_cols=178  Identities=17%  Similarity=0.164  Sum_probs=132.3

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|+++|++++  +..|.||||+|+..|+.+++++|++.|++     ++..+..+.+|||.|+..|+ .+++++|
T Consensus        14 ~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~~~t~L~~A~~~g~-~~~v~~L   87 (413)
T PHA02875         14 ELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-----PDVKYPDIESELHDAVEEGD-VKAVEEL   87 (413)
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----ccccCCCcccHHHHHHHCCC-HHHHHHH
Confidence            4688999999998765  55799999999999999999999997765     55666677777777777777 7777777


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      +..+....+..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|+
T Consensus        88 l~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~-------~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~  159 (413)
T PHA02875         88 LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI-------PNTDKFSPLHLAVMMGDIKGIELLID-HKA  159 (413)
T ss_pred             HHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC
Confidence            7777633344556677777777777777777777777777665       46667777777777777777777777 577


Q ss_pred             hhcccCCCCCCHhHHhcc--CCcchhhhhhccchhh
Q 037875          163 LIGEKDMDGMTALQLLSC--KPEAFKLKQERGFFKK  196 (204)
Q Consensus       163 ~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~~~~  196 (204)
                      +++.+|..|.||||+|+.  +.++.+.+++.|+...
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID  195 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            777777777777777763  3456666666665443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=5.5e-30  Score=190.46  Aligned_cols=140  Identities=16%  Similarity=0.093  Sum_probs=119.8

Q ss_pred             cCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHH
Q 037875           34 FKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIF  113 (204)
Q Consensus        34 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  113 (204)
                      .++.+++++|++.|+       +.+|..|.||||+|+..++ .+++++|++.++ +++..  .+.||||+|+..|+.+++
T Consensus         9 ~~~~~~~~~Lis~~a-------~~~D~~G~TpLh~Aa~~g~-~eiv~~Ll~~ga-~~n~~--d~~TpLh~Aa~~g~~eiV   77 (284)
T PHA02791          9 WKSKQLKSFLSSKDA-------FKADVHGHSALYYAIADNN-VRLVCTLLNAGA-LKNLL--ENEFPLHQAATLEDTKIV   77 (284)
T ss_pred             cCHHHHHHHHHhCCC-------CCCCCCCCcHHHHHHHcCC-HHHHHHHHHCcC-CCcCC--CCCCHHHHHHHCCCHHHH
Confidence            357899999999764       4578899999999999999 899999999987 66654  468999999999999999


Q ss_pred             HHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCC-CCHhHHhccC--Ccchhhhhh
Q 037875          114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDG-MTALQLLSCK--PEAFKLKQE  190 (204)
Q Consensus       114 ~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g-~t~l~~a~~~--~~~~~~~~~  190 (204)
                      ++|++.|++++.       ++..|+||||+|+..|+.++++.|+. .|++++.++..| .||||+|+..  .++.+.++.
T Consensus        78 ~lLL~~Gadvn~-------~d~~G~TpLh~Aa~~g~~eivk~Ll~-~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~  149 (284)
T PHA02791         78 KILLFSGMDDSQ-------FDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS  149 (284)
T ss_pred             HHHHHCCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHh
Confidence            999999998876       58899999999999999999999998 699999888887 4899998744  456666665


Q ss_pred             cc
Q 037875          191 RG  192 (204)
Q Consensus       191 ~g  192 (204)
                      .+
T Consensus       150 ~~  151 (284)
T PHA02791        150 EI  151 (284)
T ss_pred             cC
Confidence            54

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.4e-29  Score=200.71  Aligned_cols=157  Identities=22%  Similarity=0.195  Sum_probs=98.3

Q ss_pred             HHHHhhhcccccc--ccC-CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHh
Q 037875            8 VCRKISDHALHVL--TVH-DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR   84 (204)
Q Consensus         8 ~~~~l~~~~~~~~--~~~-~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~   84 (204)
                      +++.|+++|++++  +.. |.||||+|+..|+.+++++|++.|++     ++..+..|.||||.|+..++ .+++++|+.
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-----~n~~d~~g~tpLh~A~~~~~-~~iv~~Ll~  222 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN-----VNIPDKTNNSPLHHAVKHYN-KPIVHILLE  222 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHhCC-HHHHHHHHH
Confidence            6666666666543  334 66666666666666666666665544     55666666666666666666 666666666


Q ss_pred             hCCCccccccCCCCcHHHHHHHc-CCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875           85 KAPGLLGMRNNNGETALFRSARY-GKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus        85 ~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      .|+ +++.++..|.||||+|+.. ++.+++++|+++|++++..      .+..|.||||.|  .++.+++++|++ .|+|
T Consensus       223 ~ga-~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~------~~~~g~TpLh~A--~~~~~~v~~Ll~-~gad  292 (477)
T PHA02878        223 NGA-STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK------SYILGLTALHSS--IKSERKLKLLLE-YGAD  292 (477)
T ss_pred             cCC-CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCcc------CCCCCCCHHHHH--ccCHHHHHHHHH-CCCC
Confidence            665 5666666666666666654 4666666666666666542      112566666666  345566666666 4666


Q ss_pred             hcccCCCCCCHhHHhcc
Q 037875          164 IGEKDMDGMTALQLLSC  180 (204)
Q Consensus       164 ~~~~~~~g~t~l~~a~~  180 (204)
                      ++..|..|.|||++|+.
T Consensus       293 in~~d~~g~TpL~~A~~  309 (477)
T PHA02878        293 INSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCCcCCCCCCHHHHHHH
Confidence            66666666666666654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=3.6e-29  Score=195.29  Aligned_cols=168  Identities=24%  Similarity=0.276  Sum_probs=129.5

Q ss_pred             HHHHHHHhhhc-cccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccc-cCCCcHHHHHHhcCCCHHHHH
Q 037875            5 VIEVCRKISDH-ALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQN-KAGNTVLHATATSSRALPVAD   80 (204)
Q Consensus         5 ~~~~~~~l~~~-~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~   80 (204)
                      .++-++.+++. |.++  .|.+|.++||+||.+++.+++++|+++|++     +|... .-+.||||||+++|+ ..+|+
T Consensus        56 ~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad-----vn~~gG~l~stPLHWAar~G~-~~vv~  129 (600)
T KOG0509|consen   56 ELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD-----VNAIGGVLGSTPLHWAARNGH-ISVVD  129 (600)
T ss_pred             hHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC-----ccccCCCCCCCcchHHHHcCc-HHHHH
Confidence            35566666666 6544  456788888888888888888888887666     66666 467888888888888 78888


Q ss_pred             HHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHh
Q 037875           81 KLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEY  160 (204)
Q Consensus        81 ~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  160 (204)
                      +|+++|+ +++.+|.+|.+++|.|+++|+.-.+-+|+.++++++.       +|..|+||||+|+..|+...+..||. .
T Consensus       130 lLlqhGA-dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~-------~D~~grTpLmwAaykg~~~~v~~LL~-f  200 (600)
T KOG0509|consen  130 LLLQHGA-DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL-------RDNNGRTPLMWAAYKGFALFVRRLLK-F  200 (600)
T ss_pred             HHHHcCC-CCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC-------cCCCCCCHHHHHHHhcccHHHHHHHH-h
Confidence            8888887 7888888888888888888888888888888877665       68888888888888887776666766 6


Q ss_pred             chhhcccC-CCCCCHhHHhc--cCCcchhh
Q 037875          161 KYLIGEKD-MDGMTALQLLS--CKPEAFKL  187 (204)
Q Consensus       161 g~~~~~~~-~~g~t~l~~a~--~~~~~~~~  187 (204)
                      |+.+...| .+|.||||.|+  .+..+.++
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~~~gN~~~v~L  230 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAVVGGNLTAVKL  230 (600)
T ss_pred             cccccccccccCCchHHHHHhcCCcceEeh
Confidence            88888777 78888888886  44455553

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.5e-29  Score=199.53  Aligned_cols=68  Identities=12%  Similarity=-0.161  Sum_probs=57.5

Q ss_pred             CccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC--cchhhhhhccchhhh
Q 037875          129 QPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP--EAFKLKQERGFFKKL  197 (204)
Q Consensus       129 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~~~g~~~~~  197 (204)
                      +++.+|..|+||||+|+..++.+++++|++ .|+|++.++..|.|||+.|+.+.  ++++.+++.++....
T Consensus       250 dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        250 DINQVDELGFNPLYYSVSHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             CCCCcCcCCccHHHHHHHcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHH
Confidence            345678889999999999999999999999 69999999999999999998654  666777777655543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=198.08  Aligned_cols=185  Identities=16%  Similarity=0.060  Sum_probs=154.9

Q ss_pred             HHHHHHHHhhhcccccc--ccCCchHHHHHHhc---CChHHHHHHHhhCchhhhhhh-cccccCCCcHHHHHHhc--CCC
Q 037875            4 KVIEVCRKISDHALHVL--TVHDDTVLHMATYF---KRDDLALKLLDEIPELYIHKM-TRQNKAGNTVLHATATS--SRA   75 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~~~l~~a~~~--~~~   75 (204)
                      ...++++.|+++|++++  +..|.||||.|+..   ++.+++++|++.|++     + +..+..|.||||+|+..  ++ 
T Consensus        86 ~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad-----in~~~d~~g~tpLh~a~~~~~~~-  159 (494)
T PHA02989         86 KIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN-----VNDVKNSRGYNLLHMYLESFSVK-  159 (494)
T ss_pred             hHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC-----cccccCCCCCCHHHHHHHhccCC-
Confidence            35688999999998764  67799999988765   678999999997776     7 67889999999998765  45 


Q ss_pred             HHHHHHHHhhCCCcccc-ccCCCCcHHHHHHHcC----CHHHHHHHHhcccCCCCCC-----------------------
Q 037875           76 LPVADKLLRKAPGLLGM-RNNNGETALFRSARYG----KADIFNFLAGKIADYDQPS-----------------------  127 (204)
Q Consensus        76 ~~~~~~Ll~~~~~~~~~-~~~~~~t~l~~a~~~~----~~~~~~~L~~~~~~~~~~~-----------------------  127 (204)
                      .+++++|+++|+ +++. .+..|.||||+|++.+    +.+++++|++.|++++...                       
T Consensus       160 ~~iv~~Ll~~Ga-di~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~  238 (494)
T PHA02989        160 KDVIKILLSFGV-NLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFK  238 (494)
T ss_pred             HHHHHHHHHcCC-CccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchH
Confidence            899999999998 7776 6788999999987754    8899999999999876533                       


Q ss_pred             --------CCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchhh
Q 037875          128 --------KQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKK  196 (204)
Q Consensus       128 --------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~  196 (204)
                              .+++.+|..|+||||+|+..|+.++++.|++ .|+|++.+|..|.|||++|+.+  .++.+.+++.++...
T Consensus       239 il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        239 VLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             HHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCChH
Confidence                    2346788899999999999999999999999 6999999999999999999854  456666666665443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9e-29  Score=198.66  Aligned_cols=186  Identities=23%  Similarity=0.187  Sum_probs=133.2

Q ss_pred             HHHHHHHHhhhcccccc--ccCCchHHHHHH--hcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcC--CCHH
Q 037875            4 KVIEVCRKISDHALHVL--TVHDDTVLHMAT--YFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSS--RALP   77 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~--~~~~~~~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~   77 (204)
                      ...++++.|+++|++++  +..|.||||+|+  ..|+.+++++|++.|++     ++..+..|.||||+|+..+  + .+
T Consensus        84 ~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~-~~  157 (480)
T PHA03100         84 DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-----VNIKNSDGENLLHLYLESNKID-LK  157 (480)
T ss_pred             chHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHcCCCh-HH
Confidence            34566777777776543  445677777777  77777777777775554     5666667777777777766  5 67


Q ss_pred             HHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCC-------------------------------
Q 037875           78 VADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQP-------------------------------  126 (204)
Q Consensus        78 ~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~-------------------------------  126 (204)
                      ++++|++.|+ +++.++..|.||||+|+..|+.+++++|+++|++++..                               
T Consensus       158 iv~~Ll~~g~-din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~L  236 (480)
T PHA03100        158 ILKLLIDKGV-DINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYL  236 (480)
T ss_pred             HHHHHHHCCC-CcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHH
Confidence            7777777766 56666666777777777777777777777666665421                               


Q ss_pred             ---CCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc--cCCcchhhhhhccchhhh
Q 037875          127 ---SKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS--CKPEAFKLKQERGFFKKL  197 (204)
Q Consensus       127 ---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~~~  197 (204)
                         +.+++.++..|.||||+|+..|+.+++++|++ .|++++.++..|.||+++|+  .+.++++.+++.|..-..
T Consensus       237 l~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        237 LSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence               12344578889999999999999999999888 69999999999999999997  445777888877765443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=194.43  Aligned_cols=178  Identities=20%  Similarity=0.174  Sum_probs=146.6

Q ss_pred             HHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHh
Q 037875            7 EVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR   84 (204)
Q Consensus         7 ~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~   84 (204)
                      ++++.+++.|+++  .+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|++
T Consensus       105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-----~n~~d~~g~tpLh~A~~~~~-~~iv~~Ll~  178 (434)
T PHA02874        105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-----VNIEDDNGCYPIHIAIKHNF-FDIIKLLLE  178 (434)
T ss_pred             HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-----CCCcCCCCCCHHHHHHHCCc-HHHHHHHHH
Confidence            4556666666654  356799999999999999999999997766     78889999999999999999 899999999


Q ss_pred             hCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCC------------------------CCCccccCCCCccH
Q 037875           85 KAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQP------------------------SKQPFLQRNDQSTV  140 (204)
Q Consensus        85 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~------------------------~~~~~~~~~~g~t~  140 (204)
                      .++ +++..+..|.||||+|+..|+.+++++|++.|++++..                        +.+++.++..|+||
T Consensus       179 ~g~-~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~Tp  257 (434)
T PHA02874        179 KGA-YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTP  257 (434)
T ss_pred             CCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCH
Confidence            998 78889999999999999999999999999999876542                        13356677889999


Q ss_pred             HHHHHHhC-CHHHHHHHHHHhchhhcccCCCCCCHhHHhccC---Ccchhhhhhcc
Q 037875          141 LHMAVISQ-HFELALEIAKEYKYLIGEKDMDGMTALQLLSCK---PEAFKLKQERG  192 (204)
Q Consensus       141 l~~a~~~~-~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~---~~~~~~~~~~g  192 (204)
                      ||+|+..+ +.+++++|+. .|++++.+|..|.|||++|+..   ..+.+.++..+
T Consensus       258 Lh~A~~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~  312 (434)
T PHA02874        258 LHHAINPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYINKDPVIKDIIANA  312 (434)
T ss_pred             HHHHHhcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhc
Confidence            99998865 7788888888 6999999999999999998743   23444444433

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.3e-28  Score=193.84  Aligned_cols=165  Identities=16%  Similarity=0.113  Sum_probs=131.9

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchh------------------hhhhhcccccCCCc
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPEL------------------YIHKMTRQNKAGNT   64 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~~~~~~g~~   64 (204)
                      ..+++++|+++|++++  +..|.||||.|+..|+.+++++|++.|++.                  .+++++.++..|.|
T Consensus        47 ~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T  126 (434)
T PHA02874         47 DAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKT  126 (434)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCcc
Confidence            4578888888887764  556788888888888888888888877543                  23456777888999


Q ss_pred             HHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHH
Q 037875           65 VLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMA  144 (204)
Q Consensus        65 ~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a  144 (204)
                      |||+|+..++ .+++++|++.|+ +++.++..|.||||+|+..++.+++++|++.|++++.       ++..|.||||+|
T Consensus       127 ~Lh~A~~~~~-~~~v~~Ll~~ga-d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~-------~~~~g~tpL~~A  197 (434)
T PHA02874        127 FLHYAIKKGD-LESIKMLFEYGA-DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV-------KDNNGESPLHNA  197 (434)
T ss_pred             HHHHHHHCCC-HHHHHHHHhCCC-CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-------CCCCCCCHHHHH
Confidence            9999999998 899999999887 7888888999999999999999999999999888775       577888999999


Q ss_pred             HHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          145 VISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       145 ~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      +..|+.+++++|++ .|++++.++..|.||||+|+
T Consensus       198 ~~~g~~~iv~~Ll~-~g~~i~~~~~~g~TpL~~A~  231 (434)
T PHA02874        198 AEYGDYACIKLLID-HGNHIMNKCKNGFTPLHNAI  231 (434)
T ss_pred             HHcCCHHHHHHHHh-CCCCCcCCCCCCCCHHHHHH
Confidence            99999999988888 57666555555555555554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=175.40  Aligned_cols=166  Identities=11%  Similarity=0.104  Sum_probs=139.9

Q ss_pred             HHHHHHHHhhhccccccccCCchHHHHHHhcC--ChHHHHHHHhhCchhhhhhhcccc-cCCCcHHHHHHhc---CCCHH
Q 037875            4 KVIEVCRKISDHALHVLTVHDDTVLHMATYFK--RDDLALKLLDEIPELYIHKMTRQN-KAGNTVLHATATS---SRALP   77 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~~-~~g~~~l~~a~~~---~~~~~   77 (204)
                      .-++.++.|++. .+..+..|.||||+|+..+  +.+++++|++.|++     ++.++ ..|.||||+|+..   ++ .+
T Consensus        32 ~~~~~vk~Li~~-~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-----vn~~~~~~g~TpLh~a~~~~~~~~-~e  104 (209)
T PHA02859         32 DDIEGVKKWIKF-VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-----VNFKTRDNNLSALHHYLSFNKNVE-PE  104 (209)
T ss_pred             CcHHHHHHHHHh-hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-----CCccCCCCCCCHHHHHHHhCcccc-HH
Confidence            346677777765 4566788999999999854  89999999997776     77776 4899999998764   35 79


Q ss_pred             HHHHHHhhCCCccccccCCCCcHHHHHHH--cCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHH-HHHhCCHHHHH
Q 037875           78 VADKLLRKAPGLLGMRNNNGETALFRSAR--YGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHM-AVISQHFELAL  154 (204)
Q Consensus        78 ~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~  154 (204)
                      ++++|+++|+ +++.++..|.||||.|+.  .++.+++++|++.|++++.       ++..|.||||. ++..++.++++
T Consensus       105 iv~~Ll~~ga-din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~-------~d~~g~t~Lh~~a~~~~~~~iv~  176 (209)
T PHA02859        105 ILKILIDSGS-SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-------KDFDNNNILYSYILFHSDKKIFD  176 (209)
T ss_pred             HHHHHHHCCC-CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc-------ccCCCCcHHHHHHHhcCCHHHHH
Confidence            9999999998 899999999999999876  4689999999999999886       58899999996 56678999999


Q ss_pred             HHHHHhchhhcccCCCCCCHhHHhccCCcch
Q 037875          155 EIAKEYKYLIGEKDMDGMTALQLLSCKPEAF  185 (204)
Q Consensus       155 ~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~~~  185 (204)
                      +|++ .|++++.+|..|.||+++|..+.-++
T Consensus       177 ~Ll~-~Gadi~~~d~~g~tpl~la~~~~~~~  206 (209)
T PHA02859        177 FLTS-LGIDINETNKSGYNCYDLIKFRNLFF  206 (209)
T ss_pred             HHHH-cCCCCCCCCCCCCCHHHHHhhhhhhh
Confidence            9988 69999999999999999998765544

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=196.54  Aligned_cols=179  Identities=17%  Similarity=0.187  Sum_probs=148.9

Q ss_pred             HHHHHHHhhhccccccccCCchHHHHHHhcC--ChHHHHHHHhhCchhhhhhhcccccC-CCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDHALHVLTVHDDTVLHMATYFK--RDDLALKLLDEIPELYIHKMTRQNKA-GNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~~~~-g~~~l~~a~~~~~~~~~~~~   81 (204)
                      ..++++.++..+.+.........+......+  ..+++++|++.|++     ++..+.. |.||||+|+..++ .+++++
T Consensus       113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad-----in~~~~~~g~tpLh~A~~~~~-~~iv~~  186 (477)
T PHA02878        113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD-----INMKDRHKGNTALHYATENKD-QRLTEL  186 (477)
T ss_pred             CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC-----CCccCCCCCCCHHHHHHhCCC-HHHHHH
Confidence            4678888888765433222222222222222  34699999997776     8888888 9999999999999 999999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHh-CCHHHHHHHHHHh
Q 037875           82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVIS-QHFELALEIAKEY  160 (204)
Q Consensus        82 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~  160 (204)
                      |+..|+ +++..+..|.||||.|+..++.+++++|++.|++++.       ++..|.||||+|+.. ++.++++.|++ .
T Consensus       187 Ll~~ga-d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~-------~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~  257 (477)
T PHA02878        187 LLSYGA-NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA-------RDKCGNTPLHISVGYCKDYDILKLLLE-H  257 (477)
T ss_pred             HHHCCC-CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHHhcCCHHHHHHHHH-c
Confidence            999998 8999999999999999999999999999999999887       689999999999976 68999999999 6


Q ss_pred             chhhcccCC-CCCCHhHHhccCCcchhhhhhccchhhhh
Q 037875          161 KYLIGEKDM-DGMTALQLLSCKPEAFKLKQERGFFKKLL  198 (204)
Q Consensus       161 g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~g~~~~~~  198 (204)
                      |++++.++. .|.||||+|..+.++++.+++.|+.....
T Consensus       258 gadvn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~~  296 (477)
T PHA02878        258 GVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINSL  296 (477)
T ss_pred             CCCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCCc
Confidence            999999886 79999999998889999999998775544

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.8e-28  Score=192.41  Aligned_cols=179  Identities=18%  Similarity=0.063  Sum_probs=157.8

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|+++|.+++  +..+.+|||.|+..|+.+++++|++.|...    .+..+..|.||||+|+..++ .+++++|
T Consensus        47 ~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~----~~~~~~~g~tpL~~A~~~~~-~~iv~~L  121 (413)
T PHA02875         47 DSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA----DDVFYKDGMTPLHLATILKK-LDIMKLL  121 (413)
T ss_pred             CHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHhCC-HHHHHHH
Confidence            4678999999998654  567899999999999999999999987652    34456689999999999999 8999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.|+ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|+
T Consensus       122 l~~ga-d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~-------~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga  192 (413)
T PHA02875        122 IARGA-DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI-------EDCCGCTPLIIAMAKGDIAICKMLLD-SGA  192 (413)
T ss_pred             HhCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHh-CCC
Confidence            99998 8999999999999999999999999999999998776       58899999999999999999999999 699


Q ss_pred             hhcccCCCCC-CHhHHhcc--CCcchhhhhhccchhhh
Q 037875          163 LIGEKDMDGM-TALQLLSC--KPEAFKLKQERGFFKKL  197 (204)
Q Consensus       163 ~~~~~~~~g~-t~l~~a~~--~~~~~~~~~~~g~~~~~  197 (204)
                      +++..+..|. ||+++|+.  +.++.+.+++.|+....
T Consensus       193 ~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        193 NIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             CCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            9999988875 78888874  45788888888877544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=4.1e-29  Score=194.95  Aligned_cols=164  Identities=25%  Similarity=0.235  Sum_probs=149.6

Q ss_pred             HHHHHHHHhhhccccccccC---CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHH
Q 037875            4 KVIEVCRKISDHALHVLTVH---DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVAD   80 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~---~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~   80 (204)
                      .+++++++|+++|++++...   +.||||+|+++|+..+|+.|++.|++     ++..|.+|.+|+|.|+..++ .-++-
T Consensus        89 Nrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd-----pt~~D~~G~~~lHla~~~~~-~~~va  162 (600)
T KOG0509|consen   89 NRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD-----PTLKDKQGLTPLHLAAQFGH-TALVA  162 (600)
T ss_pred             CcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC-----CceecCCCCcHHHHHHHhCc-hHHHH
Confidence            46899999999999988654   78999999999999999999997766     89999999999999999999 89999


Q ss_pred             HHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHh
Q 037875           81 KLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEY  160 (204)
Q Consensus        81 ~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  160 (204)
                      +|+.++. +++.+|.+|+|||++|+..|+...+..|+..++.+...      .+..|.||||+|+..|+..++. |+.+.
T Consensus       163 yll~~~~-d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~------d~~~g~TpLHwa~~~gN~~~v~-Ll~~g  234 (600)
T KOG0509|consen  163 YLLSKGA-DIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLT------DDNHGNTPLHWAVVGGNLTAVK-LLLEG  234 (600)
T ss_pred             HHHHhcc-cCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccc------ccccCCchHHHHHhcCCcceEe-hhhhc
Confidence            9999997 99999999999999999999998889999999988773      2489999999999999999998 55557


Q ss_pred             chhhcccCCCCCCHhHHhccC
Q 037875          161 KYLIGEKDMDGMTALQLLSCK  181 (204)
Q Consensus       161 g~~~~~~~~~g~t~l~~a~~~  181 (204)
                      |++.+..|.+|.||+.+|.++
T Consensus       235 ~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  235 GADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCcccccccCCCCHHHHHHHh
Confidence            899999999999999999765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.3e-28  Score=196.27  Aligned_cols=186  Identities=22%  Similarity=0.260  Sum_probs=157.4

Q ss_pred             HHHHHHHHhhhcccccc--ccCCchHHHH-----HHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHH--hcCC
Q 037875            4 KVIEVCRKISDHALHVL--TVHDDTVLHM-----ATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATA--TSSR   74 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~--~~~~~~~L~~-----A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~--~~~~   74 (204)
                      ...++++.|+++|++++  +..+.+|||+     |+..++.+++++|++.|++     ++..+..|.||||+|+  ..++
T Consensus        46 ~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~-----i~~~d~~g~tpL~~A~~~~~~~  120 (480)
T PHA03100         46 RNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN-----VNAPDNNGITPLLYAISKKSNS  120 (480)
T ss_pred             CCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC-----CCCCCCCCCchhhHHHhcccCh
Confidence            45789999999998865  5678999999     9999999999999997776     7889999999999999  8898


Q ss_pred             CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC--CHHHHHHHHhcccCCCCCC-------------------------
Q 037875           75 ALPVADKLLRKAPGLLGMRNNNGETALFRSARYG--KADIFNFLAGKIADYDQPS-------------------------  127 (204)
Q Consensus        75 ~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~~~~~~~~~-------------------------  127 (204)
                       .+++++|++.|+ +++..+..|.||||+|+..+  +.+++++|+++|++++...                         
T Consensus       121 -~~iv~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  198 (480)
T PHA03100        121 -YSIVEYLLDNGA-NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN  198 (480)
T ss_pred             -HHHHHHHHHcCC-CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence             999999999998 88999999999999999999  9999999999999876531                         


Q ss_pred             -CCccccCCCC------ccHHHHHHHhCC--HHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhccchhh
Q 037875          128 -KQPFLQRNDQ------STVLHMAVISQH--FELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERGFFKK  196 (204)
Q Consensus       128 -~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~~~~  196 (204)
                       .+++..+..|      .||+|.|+..++  .+++++|++ .|++++.+|..|.||||+|+.  +.++++.+++.|+...
T Consensus       199 ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n  277 (480)
T PHA03100        199 GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN  277 (480)
T ss_pred             CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence             2233444444      666666666677  778888887 589999999999999999985  4678888888887544


Q ss_pred             h
Q 037875          197 L  197 (204)
Q Consensus       197 ~  197 (204)
                      .
T Consensus       278 ~  278 (480)
T PHA03100        278 L  278 (480)
T ss_pred             c
Confidence            3

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=4.7e-28  Score=191.59  Aligned_cols=178  Identities=12%  Similarity=0.097  Sum_probs=128.7

Q ss_pred             HHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCC-CHHHHHHH
Q 037875            6 IEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR-ALPVADKL   82 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~-~~~~~~~L   82 (204)
                      .++++.|+++|++++  +..|.||||+|+..|+.+++++|++.|++     ++.+|..|.||||+|+..++ ..+++++|
T Consensus        52 ~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-----in~~d~~g~TpLh~A~~~~~~~~e~v~lL  126 (446)
T PHA02946         52 ERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD-----PNACDKQHKTPLYYLSGTDDEVIERINLL  126 (446)
T ss_pred             HHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-----CCCCCCCCCCHHHHHHHcCCchHHHHHHH
Confidence            468999999998765  67899999999999999999999997766     88899999999999887653 25778888


Q ss_pred             HhhCCCcccc-ccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCC----------------------------CCCcccc
Q 037875           83 LRKAPGLLGM-RNNNGETALFRSARYGKADIFNFLAGKIADYDQP----------------------------SKQPFLQ  133 (204)
Q Consensus        83 l~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~----------------------------~~~~~~~  133 (204)
                      +++|+ +++. .+..|.|||+ |+..++.+++++|++.|++++..                            +.+++.+
T Consensus       127 l~~Ga-din~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~  204 (446)
T PHA02946        127 VQYGA-KINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKP  204 (446)
T ss_pred             HHcCC-CcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCccc
Confidence            88887 5653 4666677775 44556666666666666554321                            1223345


Q ss_pred             CCCCccHHHHHHHhC--CHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC---cchhhhhhcc
Q 037875          134 RNDQSTVLHMAVISQ--HFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP---EAFKLKQERG  192 (204)
Q Consensus       134 ~~~g~t~l~~a~~~~--~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~---~~~~~~~~~g  192 (204)
                      |..|+||||+|+..+  +.++++.|+.  |++++.+|..|.||||+|+.+.   ++.+.++..|
T Consensus       205 d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g  266 (446)
T PHA02946        205 DHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTS  266 (446)
T ss_pred             CCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCC
Confidence            777777887777765  6677766553  6777777777788887777542   3455555554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=9.8e-28  Score=196.58  Aligned_cols=178  Identities=15%  Similarity=0.119  Sum_probs=150.0

Q ss_pred             HHHHHHHhhhcc-cccc---ccCCchHHHHHHh--cCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCC-CHH
Q 037875            5 VIEVCRKISDHA-LHVL---TVHDDTVLHMATY--FKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR-ALP   77 (204)
Q Consensus         5 ~~~~~~~l~~~~-~~~~---~~~~~~~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~-~~~   77 (204)
                      -++++++|+++| ++++   +..|.||||+|+.  .++.+++++|++.|++     ++.++..|.||||+|+..++ ..+
T Consensus       154 ~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-----VN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        154 DLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-----VNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             CHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCCCCHH
Confidence            358999999999 7765   5679999999865  4678999999997766     89999999999999999986 258


Q ss_pred             HHHHHHhhCCCccccccCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhcc
Q 037875           78 VADKLLRKAPGLLGMRNNNGETALFRS-------------------------------------ARYGKADIFNFLAGKI  120 (204)
Q Consensus        78 ~~~~Ll~~~~~~~~~~~~~~~t~l~~a-------------------------------------~~~~~~~~~~~L~~~~  120 (204)
                      ++++|+++|+ +++.++..|.||||+|                                     +..|+.++++.|++.|
T Consensus       229 IVklLLe~GA-DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        229 VIKKIIELGG-DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             HHHHHHHcCC-CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            9999999998 8999999999999975                                     3456778888999988


Q ss_pred             cCCCCCCCCccccCCCCccHHHHHHH--hCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc----------------CC
Q 037875          121 ADYDQPSKQPFLQRNDQSTVLHMAVI--SQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC----------------KP  182 (204)
Q Consensus       121 ~~~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~----------------~~  182 (204)
                      ++++.       ++..|+||||+|+.  .++.+++++|++ .|++++.+|..|.||||+|+.                +.
T Consensus       308 AdIN~-------kD~~G~TPLH~Aaa~~~~~~eIVklLLe-~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~  379 (764)
T PHA02716        308 VKLHY-------KDSAGRTCLHQYILRHNISTDIIKLLHE-YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRL  379 (764)
T ss_pred             Cceec-------cCCCCCCHHHHHHHHhCCCchHHHHHHH-cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChH
Confidence            88776       68999999999764  457899999998 699999999999999998753                34


Q ss_pred             cchhhhhhccchhh
Q 037875          183 EAFKLKQERGFFKK  196 (204)
Q Consensus       183 ~~~~~~~~~g~~~~  196 (204)
                      ++.+.+++.|....
T Consensus       380 eVVklLL~~GADIn  393 (764)
T PHA02716        380 DVIQCLISLGADIT  393 (764)
T ss_pred             HHHHHHHHCCCCCC
Confidence            67777777776543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.5e-27  Score=184.33  Aligned_cols=173  Identities=10%  Similarity=0.007  Sum_probs=149.0

Q ss_pred             HHHHHHHhhhccccc--------cccCCchHHHHHHh--cCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCC
Q 037875            5 VIEVCRKISDHALHV--------LTVHDDTVLHMATY--FKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR   74 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--------~~~~~~~~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~   74 (204)
                      -.++++.|+++|.++        .+..++|+||.++.  .|+.++|++|+++|++     ++..  ++.||+|.|+..++
T Consensus        89 ~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD-----In~~--~~~t~lh~A~~~~~  161 (437)
T PHA02795         89 YKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV-----IYKI--ECLNAYFRGICKKE  161 (437)
T ss_pred             hHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCC-----CCCC--CCCCHHHHHHHcCc
Confidence            457899999999884        35678999999999  8999999999997777     6653  45899999999999


Q ss_pred             CHHHHHHHHhhCCCccccc-----cCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCC
Q 037875           75 ALPVADKLLRKAPGLLGMR-----NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQH  149 (204)
Q Consensus        75 ~~~~~~~Ll~~~~~~~~~~-----~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  149 (204)
                       .+++++|+++|+.+.+..     +..+.+++|.|...++.+++++|+++|++++.       ++..|.||||+|+..|+
T Consensus       162 -~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~-------kD~~G~TpLh~Aa~~g~  233 (437)
T PHA02795        162 -SSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ-------LDAGGRTLLYRAIYAGY  233 (437)
T ss_pred             -HHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc-------CCCCCCCHHHHHHHcCC
Confidence             899999999997333322     13477899999999999999999999999987       58999999999999999


Q ss_pred             HHHHHHHHHHhchhhcccCCCCCCHhHHhccCC----------cchhhhhhccc
Q 037875          150 FELALEIAKEYKYLIGEKDMDGMTALQLLSCKP----------EAFKLKQERGF  193 (204)
Q Consensus       150 ~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~----------~~~~~~~~~g~  193 (204)
                      .+++++|++ .|++++.++..|.||||+|+.++          ++.+.++..|+
T Consensus       234 ~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        234 IDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             HHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            999999999 69999999999999999998665          57777776664

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.5e-27  Score=189.07  Aligned_cols=182  Identities=20%  Similarity=0.142  Sum_probs=111.2

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcC-ChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHH--hcCCCHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFK-RDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATA--TSSRALPVA   79 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~--~~~~~~~~~   79 (204)
                      ..++++.|++.|++++  +..|.||||+|+..+ ..+++++|++.|++     ++.++..|.||||+|+  ..++ .+++
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~-----in~~~~~g~tpLh~a~~~~~~~-~~iv  135 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD-----VNAKDKVGRTPLHVYLSGFNIN-PKVI  135 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHhhCCcCC-HHHH
Confidence            4566777777776653  456777777777777 47777777775554     6666777777777776  3334 5667


Q ss_pred             HHHHhhCCCccccccCCCCcHHHHHHHcC--CHHHHHHHHhcccCCCCC-------------------------------
Q 037875           80 DKLLRKAPGLLGMRNNNGETALFRSARYG--KADIFNFLAGKIADYDQP-------------------------------  126 (204)
Q Consensus        80 ~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~~~~~~~~-------------------------------  126 (204)
                      ++|++.|+ +++..+..|.||||+++..+  ..+++++|++.|++++..                               
T Consensus       136 ~~Ll~~ga-d~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~  214 (471)
T PHA03095        136 RLLLRKGA-DVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD  214 (471)
T ss_pred             HHHHHcCC-CCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC
Confidence            77777665 56666666666666665543  345555555555443211                               


Q ss_pred             --------------------------------CCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCH
Q 037875          127 --------------------------------SKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTA  174 (204)
Q Consensus       127 --------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~  174 (204)
                                                      +.+++.++..|+||||+|+..|+.+++++||. .|++++.++..|.||
T Consensus       215 ~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tp  293 (471)
T PHA03095        215 PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSDGNTP  293 (471)
T ss_pred             CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCH
Confidence                                            11234455666666666666666666666666 467777666667777


Q ss_pred             hHHhccC--Ccchhhhhhccch
Q 037875          175 LQLLSCK--PEAFKLKQERGFF  194 (204)
Q Consensus       175 l~~a~~~--~~~~~~~~~~g~~  194 (204)
                      |++|+.+  .++++.++..++.
T Consensus       294 l~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        294 LSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHhCCC
Confidence            7766533  3444444444433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=6.5e-27  Score=191.81  Aligned_cols=172  Identities=16%  Similarity=0.129  Sum_probs=144.8

Q ss_pred             HHHHHHhhhcccccc--ccCCchHHHHHHhcCC--hHHHHHHHhhCchhhhhhhcccccCCCcHHHHHH-----------
Q 037875            6 IEVCRKISDHALHVL--TVHDDTVLHMATYFKR--DDLALKLLDEIPELYIHKMTRQNKAGNTVLHATA-----------   70 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~-----------   70 (204)
                      .+++++|+++|++++  +..|.||||+|+..|+  .++++.|++.|++     ++.++..|.||||.|+           
T Consensus       192 ~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-----VN~kD~~G~TPLh~Ai~~a~n~~~EIv  266 (764)
T PHA02716        192 IDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-----MDMKCVNGMSPIMTYIINIDNINPEIT  266 (764)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHhhhccCHHHH
Confidence            579999999998875  6679999999999995  4899999997776     8899999999999753           


Q ss_pred             --------------------------hcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHH--cCCHHHHHHHHhcccC
Q 037875           71 --------------------------TSSRALPVADKLLRKAPGLLGMRNNNGETALFRSAR--YGKADIFNFLAGKIAD  122 (204)
Q Consensus        71 --------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~L~~~~~~  122 (204)
                                                ..++ .+++++|++.|+ +++.++..|+||||+|+.  .++.+++++|++.|++
T Consensus       267 kiLie~~d~n~~~~~~~~L~~~i~AA~~g~-leiVklLLe~GA-dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD  344 (764)
T PHA02716        267 NIYIESLDGNKVKNIPMILHSYITLARNID-ISVVYSFLQPGV-KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND  344 (764)
T ss_pred             HHHHHhccccccccchhhhHHHHHHHHcCC-HHHHHHHHhCCC-ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC
Confidence                                      3456 788999999998 899999999999999764  4678999999999999


Q ss_pred             CCCCCCCccccCCCCccHHHHHHH--------------hCCHHHHHHHHHHhchhhcccCCCCCCHhHHh-c--c---CC
Q 037875          123 YDQPSKQPFLQRNDQSTVLHMAVI--------------SQHFELALEIAKEYKYLIGEKDMDGMTALQLL-S--C---KP  182 (204)
Q Consensus       123 ~~~~~~~~~~~~~~g~t~l~~a~~--------------~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a-~--~---~~  182 (204)
                      ++.       +|..|+||||+|+.              .++.++++.|++ .|++++.+|..|.||||.+ +  .   ..
T Consensus       345 IN~-------kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~-~GADIn~kn~~G~TPLh~y~~~a~n~~~~  416 (764)
T PHA02716        345 LNE-------PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS-LGADITAVNCLGYTPLTSYICTAQNYMYY  416 (764)
T ss_pred             Ccc-------CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH-CCCCCCCcCCCCCChHHHHHHHHHhcChH
Confidence            887       68999999999875              368899999999 6999999999999999942 2  2   23


Q ss_pred             cchhhhhhcc
Q 037875          183 EAFKLKQERG  192 (204)
Q Consensus       183 ~~~~~~~~~g  192 (204)
                      ++.+.++..|
T Consensus       417 dIvklLis~~  426 (764)
T PHA02716        417 DIIDCLISDK  426 (764)
T ss_pred             HHHHHHHhCc
Confidence            5666665554

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=8e-27  Score=184.61  Aligned_cols=172  Identities=13%  Similarity=0.109  Sum_probs=117.9

Q ss_pred             HHHHHHhhhcccccc--ccCCchHHHHHHhcC--ChHHHHHHHhhCchhh----------------------------hh
Q 037875            6 IEVCRKISDHALHVL--TVHDDTVLHMATYFK--RDDLALKLLDEIPELY----------------------------IH   53 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~--~~~~v~~Ll~~g~~~~----------------------------~~   53 (204)
                      .++++.|+++|++++  +..|.||||+|+..+  ..++++.|++.|++.+                            ++
T Consensus        85 ~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~ga  164 (446)
T PHA02946         85 NRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGF  164 (446)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccc
Confidence            455666666665543  455666666665543  2455666665554421                            22


Q ss_pred             hhcccccCCCcHHHHHHhcCC-CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC--CHHHHHHHHhcccCCCCCCCCc
Q 037875           54 KMTRQNKAGNTVLHATATSSR-ALPVADKLLRKAPGLLGMRNNNGETALFRSARYG--KADIFNFLAGKIADYDQPSKQP  130 (204)
Q Consensus        54 ~~~~~~~~g~~~l~~a~~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~~~  130 (204)
                      +++..|..|.||||+|+..++ ..+++++|++.|+ +++.++..|.||||+|+..+  +.+++++|++ |++++.     
T Consensus       165 d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Ga-din~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~-----  237 (446)
T PHA02946        165 EARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGI-SPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNK-----  237 (446)
T ss_pred             cccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCC-----
Confidence            356677788888888776554 1468888888887 88888889999999999876  6788888875 777766     


Q ss_pred             cccCCCCccHHHHHHHhCCH-HHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhccc
Q 037875          131 FLQRNDQSTVLHMAVISQHF-ELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERGF  193 (204)
Q Consensus       131 ~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~  193 (204)
                        +|..|.||||+|+..++. ++++.|+. .|++++     ++| ++++..  ..++.+.+...|.
T Consensus       238 --~d~~G~TpLh~A~~~~~~~~~~~~Ll~-~g~~~~-----~~~-~~~a~~~~~~~~~e~l~~~g~  294 (446)
T PHA02946        238 --QNKFGDSPLTLLIKTLSPAHLINKLLS-TSNVIT-----DQT-VNICIFYDRDDVLEIINDKGK  294 (446)
T ss_pred             --CCCCCCCHHHHHHHhCChHHHHHHHHh-CCCCCC-----CcH-HHHHHHcCchHHHHHHHHcCc
Confidence              689999999999999884 78888888 576544     334 677763  3355566655553

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.5e-26  Score=184.21  Aligned_cols=161  Identities=19%  Similarity=0.133  Sum_probs=131.1

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcC---ChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFK---RDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVA   79 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~   79 (204)
                      .++++++|+++|++++  +..|.||||+|+..+   +.+++++|++.|++     ++.++..|.||||+|+..++..+++
T Consensus        26 ~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-----in~~~~~g~TpLh~A~~~~~~~~iv  100 (471)
T PHA03095         26 TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-----VNAPERCGFTPLHLYLYNATTLDVI  100 (471)
T ss_pred             CHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCCcHHHH
Confidence            4688999999998765  667999999999998   99999999997776     8899999999999999999438999


Q ss_pred             HHHHhhCCCccccccCCCCcHHHHHH--HcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhC--CHHHHHH
Q 037875           80 DKLLRKAPGLLGMRNNNGETALFRSA--RYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQ--HFELALE  155 (204)
Q Consensus        80 ~~Ll~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~  155 (204)
                      ++|++.|+ +++.++..|.||||+|+  ..++.+++++|++.|++++.       ++..|.||||+++..+  ..++++.
T Consensus       101 ~lLl~~ga-~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~-------~d~~g~tpL~~a~~~~~~~~~iv~~  172 (471)
T PHA03095        101 KLLIKAGA-DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA-------LDLYGMTPLAVLLKSRNANVELLRL  172 (471)
T ss_pred             HHHHHcCC-CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc-------cCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            99999998 89999999999999999  55688999999999998876       4566666666666544  4556666


Q ss_pred             HHHHhchhhcccCCCCCCHhHHhc
Q 037875          156 IAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       156 Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      |++ .|++++..+..|.||||+++
T Consensus       173 Ll~-~g~~~~~~d~~g~t~Lh~~~  195 (471)
T PHA03095        173 LID-AGADVYAVDDRFRSLLHHHL  195 (471)
T ss_pred             HHH-cCCCCcccCCCCCCHHHHHH
Confidence            655 46666555556666666554

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.6e-26  Score=189.75  Aligned_cols=180  Identities=16%  Similarity=0.106  Sum_probs=115.5

Q ss_pred             HHHHHHhhhccccc--cccCCchHHHHHHhcC-ChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            6 IEVCRKISDHALHV--LTVHDDTVLHMATYFK-RDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         6 ~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      .++++.|++.|+++  .+..|.||||+|+..| ..+.++.|+..|++     ++..+..|.||||+|+..+...+++++|
T Consensus       287 ~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-----in~~d~~g~TpLh~A~~~~~~~~iv~lL  361 (682)
T PHA02876        287 SRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-----VNAADRLYITPLHQASTLDRNKDIVITL  361 (682)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-----CCCcccCCCcHHHHHHHhCCcHHHHHHH
Confidence            35677777777665  3566788888888877 47777888876655     6677777778888877765446777777


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCC---------------------------CCCccccCC
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQP---------------------------SKQPFLQRN  135 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~---------------------------~~~~~~~~~  135 (204)
                      +..++ +++.++..|.||||+|+..|+.+++++|+++|++++..                           +.+++.++.
T Consensus       362 l~~ga-din~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~  440 (682)
T PHA02876        362 LELGA-NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNK  440 (682)
T ss_pred             HHcCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCC
Confidence            77776 77778888888888888888888888888887776542                           112233445


Q ss_pred             CCccHHHHHHHhC-CHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCcchhhhhhcc
Q 037875          136 DQSTVLHMAVISQ-HFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERG  192 (204)
Q Consensus       136 ~g~t~l~~a~~~~-~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g  192 (204)
                      .|+||||+|+..+ +.++++.|++ .|++++.+|..|.||+++|+....+.+.++..|
T Consensus       441 ~G~TpLh~Aa~~~~~~~iv~lLl~-~Gad~n~~d~~g~tpl~~a~~~~~~v~~Ll~~~  497 (682)
T PHA02876        441 DLSTPLHYACKKNCKLDVIEMLLD-NGADVNAINIQNQYPLLIALEYHGIVNILLHYG  497 (682)
T ss_pred             CCChHHHHHHHhCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHhCCHHHHHHHCC
Confidence            5555555555443 3455555544 355555555555555555544444444444333

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=186.76  Aligned_cols=145  Identities=16%  Similarity=0.164  Sum_probs=124.6

Q ss_pred             HHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      .++++.|+++|+++  .+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++...++++|+
T Consensus       355 ~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-----~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll  429 (682)
T PHA02876        355 KDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-----IEALSQKIGTALHFALCGTNPYMSVKTLI  429 (682)
T ss_pred             HHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----ccccCCCCCchHHHHHHcCCHHHHHHHHH
Confidence            46777888888765  467799999999999999999999997766     78888899999999988777456789999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcC-CHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYG-KADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      +.|+ +++.++..|.||||+|+..+ +.+++++|++.|++++.       ++..|.||+++|+.++  ++++.|+. +|+
T Consensus       430 ~~ga-din~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~-------~d~~g~tpl~~a~~~~--~~v~~Ll~-~~a  498 (682)
T PHA02876        430 DRGA-NVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA-------INIQNQYPLLIALEYH--GIVNILLH-YGA  498 (682)
T ss_pred             hCCC-CCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHhC--CHHHHHHH-CCC
Confidence            9998 89999999999999999977 68999999999999887       6899999999999866  46777777 687


Q ss_pred             hhcc
Q 037875          163 LIGE  166 (204)
Q Consensus       163 ~~~~  166 (204)
                      +...
T Consensus       499 ~~~~  502 (682)
T PHA02876        499 ELRD  502 (682)
T ss_pred             CCCc
Confidence            7653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.1e-25  Score=160.17  Aligned_cols=158  Identities=13%  Similarity=0.107  Sum_probs=135.4

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcC--CCHHHHHHHHhhCCCcccccc-CCC
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSS--RALPVADKLLRKAPGLLGMRN-NNG   97 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~~~~~Ll~~~~~~~~~~~-~~~   97 (204)
                      .+.+.+||++|+..|+.+.|+.|++.        .+..+..|.||||+|+..+  + .+++++|++.|+ +++.++ ..|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~--------~n~~~~~g~TpLh~a~~~~~~~-~eiv~~Ll~~ga-dvn~~~~~~g   87 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF--------VNDCNDLYETPIFSCLEKDKVN-VEILKFLIENGA-DVNFKTRDNN   87 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh--------hhccCccCCCHHHHHHHcCCCC-HHHHHHHHHCCC-CCCccCCCCC
Confidence            45679999999999999999999973        5677889999999999865  6 899999999998 888886 589


Q ss_pred             CcHHHHHHHc---CCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHH--hCCHHHHHHHHHHhchhhcccCCCCC
Q 037875           98 ETALFRSARY---GKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVI--SQHFELALEIAKEYKYLIGEKDMDGM  172 (204)
Q Consensus        98 ~t~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~g~~~~~~~~~g~  172 (204)
                      .||||+|+..   ++.+++++|+++|++++.       ++..|.||||+|+.  .++.+++++|+. .|++++.+|..|.
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~-------~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~  159 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGSSITE-------EDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNN  159 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCCCCCC-------cCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCC
Confidence            9999998764   478999999999999887       68999999999876  468999999998 6999999999999


Q ss_pred             CHhHHh-c--cCCcchhhhhhccchhh
Q 037875          173 TALQLL-S--CKPEAFKLKQERGFFKK  196 (204)
Q Consensus       173 t~l~~a-~--~~~~~~~~~~~~g~~~~  196 (204)
                      ||||.+ .  .+.++.+.+++.|..-.
T Consensus       160 t~Lh~~a~~~~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        160 NILYSYILFHSDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence            999964 3  34577788888886443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.7e-25  Score=182.40  Aligned_cols=184  Identities=16%  Similarity=0.107  Sum_probs=138.9

Q ss_pred             hhHHHHHHHHhhhccccc--cccCCchHHHHHHhc---CChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCC--
Q 037875            2 EKKVIEVCRKISDHALHV--LTVHDDTVLHMATYF---KRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR--   74 (204)
Q Consensus         2 ~~~~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~--   74 (204)
                      |+..++.++.++.++...  .+..|.||||+|+..   |+.++++.|++.|++     ++..+..|.||||+|+..++  
T Consensus         8 ~~~~~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~-----v~~~~~~g~TpL~~Aa~~g~~~   82 (661)
T PHA02917          8 EEVALDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN-----PLHKNWRQLTPLEEYTNSRHVK   82 (661)
T ss_pred             hHHHHHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC-----ccccCCCCCCHHHHHHHcCChh
Confidence            455677777777766543  366788888887555   778888888886665     66777778888887665432  


Q ss_pred             --------------------------------CHHHHHHHHhhCCCccccccCCCCcHHHHH--HHcCCHHHHHHHHhcc
Q 037875           75 --------------------------------ALPVADKLLRKAPGLLGMRNNNGETALFRS--ARYGKADIFNFLAGKI  120 (204)
Q Consensus        75 --------------------------------~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~L~~~~  120 (204)
                                                      ..+++++|+++|+ +++.++..|+||||.+  +..|+.+++++|+++|
T Consensus        83 v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Ga-din~~d~~g~T~L~~~~a~~~~~~eivklLi~~G  161 (661)
T PHA02917         83 VNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGF-DLSVKCENHRSVIENYVMTDDPVPEIIDLFIENG  161 (661)
T ss_pred             HHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCC-CCCccCCCCccHHHHHHHccCCCHHHHHHHHHcC
Confidence                                            1577888888988 8999999999999965  3578999999999999


Q ss_pred             cCCCCCCCC-------ccccCCCCccHHHHHHH-----------hCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC
Q 037875          121 ADYDQPSKQ-------PFLQRNDQSTVLHMAVI-----------SQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP  182 (204)
Q Consensus       121 ~~~~~~~~~-------~~~~~~~g~t~l~~a~~-----------~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~  182 (204)
                      ++++.....       .+.....+.||||+|+.           .++.+++++|+. .|++++.+|.+|.||||+|+.++
T Consensus       162 a~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g  240 (661)
T PHA02917        162 CSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSS  240 (661)
T ss_pred             CCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcC
Confidence            998752110       00112234699999986           468899999999 69999999999999999999665


Q ss_pred             ----cchhhhhhccc
Q 037875          183 ----EAFKLKQERGF  193 (204)
Q Consensus       183 ----~~~~~~~~~g~  193 (204)
                          ++.+.++. |.
T Consensus       241 ~~~~eivk~Li~-g~  254 (661)
T PHA02917        241 HIDIDIVKLLMK-GI  254 (661)
T ss_pred             CCcHHHHHHHHh-CC
Confidence                36777654 54

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=3.6e-25  Score=176.95  Aligned_cols=181  Identities=21%  Similarity=0.148  Sum_probs=143.4

Q ss_pred             HHHHHHhhh-----cc--ccccccCCchHHHHHHhcCChHHHHHHHhhCchhhh----------hhhcccccCCCcHHHH
Q 037875            6 IEVCRKISD-----HA--LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYI----------HKMTRQNKAGNTVLHA   68 (204)
Q Consensus         6 ~~~~~~l~~-----~~--~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~~~~~~g~~~l~~   68 (204)
                      .++.+.++.     ++  .+..+..+.+|||.|+..|+.++++.+++.|.....          ..++..|..|.||||+
T Consensus       200 ~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~  279 (929)
T KOG0510|consen  200 KECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHY  279 (929)
T ss_pred             hhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHH
Confidence            456676666     22  344577889999999999999999999987643221          2356678899999999


Q ss_pred             HHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHh-cccCCCCCCCCccccCCCCccHHHHHHHh
Q 037875           69 TATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAG-KIADYDQPSKQPFLQRNDQSTVLHMAVIS  147 (204)
Q Consensus        69 a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  147 (204)
                      |+..|+ .++++.|+..|+ +++.++.++.||||.|+++|++++++.|++ .+..      ..+..|..|+||||.|++.
T Consensus       280 a~r~G~-~~svd~Ll~~Ga-~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r------llne~D~~g~tpLHlaa~~  351 (929)
T KOG0510|consen  280 AARQGG-PESVDNLLGFGA-SINSKNKDEESPLHFAAIYGRINTVERLLQESDTR------LLNESDLHGMTPLHLAAKS  351 (929)
T ss_pred             HHHcCC-hhHHHHHHHcCC-cccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc------ccccccccCCCchhhhhhc
Confidence            999999 899999999998 788899999999999999999999999988 3221      2344688899999999999


Q ss_pred             CCHHHHHHHHHHhchhhc---ccCCCCCCHhHHhc--cCCcchhhhhhccchh
Q 037875          148 QHFELALEIAKEYKYLIG---EKDMDGMTALQLLS--CKPEAFKLKQERGFFK  195 (204)
Q Consensus       148 ~~~~~~~~Ll~~~g~~~~---~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~  195 (204)
                      |+..+++.||.+ |++..   ..|.+|.||||.|+  .+......++..|..-
T Consensus       352 gH~~v~qlLl~~-GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  352 GHDRVVQLLLNK-GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             CHHHHHHHHHhc-ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            999999999884 88877   56899999999997  4556777777776554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.3e-24  Score=183.66  Aligned_cols=156  Identities=16%  Similarity=0.175  Sum_probs=113.7

Q ss_pred             HHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      .++++.+++.|+++  .|..|.||||+|+..|+.++++.|++.|++     ++.+|..|.||||+|+..++ .+++++|+
T Consensus       538 ~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-----in~~d~~G~TpL~~A~~~g~-~~iv~~L~  611 (823)
T PLN03192        538 AALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-----VHIRDANGNTALWNAISAKH-HKIFRILY  611 (823)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-----CCCcCCCCCCHHHHHHHhCC-HHHHHHHH
Confidence            45677777777654  356677788888877777777777775554     67777777788888777777 77777777


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      ..+. ..  ....+.++||.|+..|+.++++.|+++|++++.       +|..|+||||+|+..|+.+++++|++ .|++
T Consensus       612 ~~~~-~~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~-------~d~~G~TpLh~A~~~g~~~iv~~Ll~-~GAd  680 (823)
T PLN03192        612 HFAS-IS--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS-------EDHQGATALQVAMAEDHVDMVRLLIM-NGAD  680 (823)
T ss_pred             hcCc-cc--CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHCCcHHHHHHHHH-cCCC
Confidence            6554 22  223455777788888888888888877777665       47778888888888888888877777 5888


Q ss_pred             hcccCCCC-CCHhHHh
Q 037875          164 IGEKDMDG-MTALQLL  178 (204)
Q Consensus       164 ~~~~~~~g-~t~l~~a  178 (204)
                      ++..+..| .||+.++
T Consensus       681 v~~~~~~g~~t~~~l~  696 (823)
T PLN03192        681 VDKANTDDDFSPTELR  696 (823)
T ss_pred             CCCCCCCCCCCHHHHH
Confidence            88777777 7777666

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.1e-24  Score=184.19  Aligned_cols=160  Identities=21%  Similarity=0.175  Sum_probs=142.2

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCc
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGET   99 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t   99 (204)
                      .+....++|+.||..|+.++++.|++.|++     ++..|..|.||||+|+..|+ .+++++|+++|+ +++.++.+|.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-----~n~~d~~G~TpLh~Aa~~g~-~~~v~~Ll~~ga-din~~d~~G~T  593 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLD-----PDIGDSKGRTPLHIAASKGY-EDCVLVLLKHAC-NVHIRDANGNT  593 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCh-HHHHHHHHhcCC-CCCCcCCCCCC
Confidence            344567899999999999999999997776     88999999999999999999 899999999997 89999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          100 ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      |||.|+..|+.++++.|++.+...+         ...+.++||.|+..|+.++++.|++ .|++++.+|.+|.||||+|+
T Consensus       594 pL~~A~~~g~~~iv~~L~~~~~~~~---------~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~  663 (823)
T PLN03192        594 ALWNAISAKHHKIFRILYHFASISD---------PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAM  663 (823)
T ss_pred             HHHHHHHhCCHHHHHHHHhcCcccC---------cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH
Confidence            9999999999999999998776544         2457799999999999999999998 69999999999999999998


Q ss_pred             cC--Ccchhhhhhccchhh
Q 037875          180 CK--PEAFKLKQERGFFKK  196 (204)
Q Consensus       180 ~~--~~~~~~~~~~g~~~~  196 (204)
                      .+  .++.+.+++.|+.-.
T Consensus       664 ~~g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        664 AEDHVDMVRLLIMNGADVD  682 (823)
T ss_pred             HCCcHHHHHHHHHcCCCCC
Confidence            54  477788888776543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=174.91  Aligned_cols=175  Identities=14%  Similarity=0.147  Sum_probs=141.1

Q ss_pred             HHHHHHHhhhcccccccc-CCchHHHHHHhc--CChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCC-----CH
Q 037875            5 VIEVCRKISDHALHVLTV-HDDTVLHMATYF--KRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR-----AL   76 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~-~~~~~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~-----~~   76 (204)
                      -+++++.|+++|++++.. .|.||||.++..  ++.++|+.|++.|++     +|.++ .+.||||.|+..+.     ..
T Consensus        15 ~~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-----vn~~~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         15 DKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGAD-----VNYKG-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cHHHHHHHHHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCC-----ccCCC-CCCCcHHHHHhccCcchhhHH
Confidence            468899999999988753 588988765543  368999999997776     66665 56899998876542     15


Q ss_pred             HHHHHHHhhCCCccccccCCCCcHHHHHHHc---CCHHHHHHHHhcccCC-CCCCCCccccCCCCccHHHHHHHh--CCH
Q 037875           77 PVADKLLRKAPGLLGMRNNNGETALFRSARY---GKADIFNFLAGKIADY-DQPSKQPFLQRNDQSTVLHMAVIS--QHF  150 (204)
Q Consensus        77 ~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~L~~~~~~~-~~~~~~~~~~~~~g~t~l~~a~~~--~~~  150 (204)
                      +++++|+++|+ +++.++..|.||||.|+..   ++.+++++|+++|+++ +.       ++..|+||||+|+..  ++.
T Consensus        89 ~iv~~Ll~~Ga-din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~-------~d~~g~tpLh~a~~~~~~~~  160 (494)
T PHA02989         89 KIVKLLLKFGA-DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDV-------KNSRGYNLLHMYLESFSVKK  160 (494)
T ss_pred             HHHHHHHHCCC-CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccc-------cCCCCCCHHHHHHHhccCCH
Confidence            78999999998 8999999999999987654   6789999999999998 55       578899999998764  578


Q ss_pred             HHHHHHHHHhchhhcc-cCCCCCCHhHHhcc------CCcchhhhhhccch
Q 037875          151 ELALEIAKEYKYLIGE-KDMDGMTALQLLSC------KPEAFKLKQERGFF  194 (204)
Q Consensus       151 ~~~~~Ll~~~g~~~~~-~~~~g~t~l~~a~~------~~~~~~~~~~~g~~  194 (204)
                      ++++.|++ .|++++. .+..|.|||++++.      +.++.+.+++.|..
T Consensus       161 ~iv~~Ll~-~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~  210 (494)
T PHA02989        161 DVIKILLS-FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN  210 (494)
T ss_pred             HHHHHHHH-cCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC
Confidence            99999998 6999998 67889999998864      34677777777764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=3.1e-25  Score=177.30  Aligned_cols=148  Identities=24%  Similarity=0.222  Sum_probs=135.2

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHh-hCCCccccccCCCC
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR-KAPGLLGMRNNNGE   98 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~   98 (204)
                      .|.+|.||||+||..|++++++.|+..|++     ++.++.++.+|||.|+..|+ +.+|+.|++ .+....+..|..|.
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-----I~~kn~d~~spLH~AA~yg~-~ntv~rLL~~~~~rllne~D~~g~  342 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGAS-----INSKNKDEESPLHFAAIYGR-INTVERLLQESDTRLLNESDLHGM  342 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCc-----ccccCCCCCCchHHHHHccc-HHHHHHHHhCcCccccccccccCC
Confidence            467899999999999999999999997776     89999999999999999999 999999998 66678888999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHh
Q 037875           99 TALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLL  178 (204)
Q Consensus        99 t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a  178 (204)
                      ||+|.|+++||.++++.|+..|+.....+    .+|..|.|+||.|+.+|+..+++.|+. .|++++.+|..|.+++++.
T Consensus       343 tpLHlaa~~gH~~v~qlLl~~GA~~~~~~----e~D~dg~TaLH~Aa~~g~~~av~~Li~-~Ga~I~~~n~~g~SA~~~~  417 (929)
T KOG0510|consen  343 TPLHLAAKSGHDRVVQLLLNKGALFLNMS----EADSDGNTALHLAAKYGNTSAVQKLIS-HGADIGVKNKKGKSAFDTR  417 (929)
T ss_pred             CchhhhhhcCHHHHHHHHHhcChhhhccc----ccccCCchhhhHHHHhccHHHHHHHHH-cCCceeecccccccccccc
Confidence            99999999999999999999999876311    248899999999999999999999999 6999999999999999853

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.7e-25  Score=169.44  Aligned_cols=159  Identities=20%  Similarity=0.187  Sum_probs=103.5

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHh-hCchhh--h-hhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCC
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLD-EIPELY--I-HKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNG   97 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~-~g~~~~--~-~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   97 (204)
                      .+|-|||-+||++|+.++|++|++ .++++.  | ...+-....|.+||..|+..|| .++|+.|+.+++ .+|....-.
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGH-l~vVk~L~~~ga-~VN~tT~TN  117 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGH-LEVVKLLLRRGA-SVNDTTRTN  117 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCc-HHHHHHHHHhcC-ccccccccC
Confidence            346677777777777777777776 232221  0 1122223456677777777777 677777777775 666666666


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHH
Q 037875           98 ETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL  177 (204)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~  177 (204)
                      .|||--||..|+.+++++|+++|+|++.       .|+.|.|.||+||..|+.+++++|++ .|+|+|.++..|+|+||.
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~I-------anrhGhTcLmIa~ykGh~~I~qyLle-~gADvn~ks~kGNTALH~  189 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEI-------ANRHGHTCLMIACYKGHVDIAQYLLE-QGADVNAKSYKGNTALHD  189 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcc-------cccCCCeeEEeeeccCchHHHHHHHH-hCCCcchhcccCchHHHh
Confidence            6777777777777777777777777665       46777777777777777777777777 577777777777777777


Q ss_pred             hccCC--cchhhhhh
Q 037875          178 LSCKP--EAFKLKQE  190 (204)
Q Consensus       178 a~~~~--~~~~~~~~  190 (204)
                      +++.+  ++.+.++.
T Consensus       190 caEsG~vdivq~Ll~  204 (615)
T KOG0508|consen  190 CAESGSVDIVQLLLK  204 (615)
T ss_pred             hhhcccHHHHHHHHh
Confidence            76443  44444443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=8e-25  Score=165.84  Aligned_cols=169  Identities=20%  Similarity=0.208  Sum_probs=146.6

Q ss_pred             HHHHHHHhhhc-cccc----------cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcC
Q 037875            5 VIEVCRKISDH-ALHV----------LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSS   73 (204)
Q Consensus         5 ~~~~~~~l~~~-~~~~----------~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~   73 (204)
                      ..+++++|+++ ++++          ...+|-+||..|+..|+.++||.|+++|++     +|.......|||..||..|
T Consensus        54 H~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~-----VN~tT~TNStPLraACfDG  128 (615)
T KOG0508|consen   54 HADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS-----VNDTTRTNSTPLRAACFDG  128 (615)
T ss_pred             cHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc-----cccccccCCccHHHHHhcc
Confidence            45788888885 3332          234689999999999999999999997765     8888888899999999999


Q ss_pred             CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHH
Q 037875           74 RALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA  153 (204)
Q Consensus        74 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  153 (204)
                      + .+++++|+.+++ +++..|+.|.|-|++||..|+.+++++|++.|+|++.       ++..|+|+||.++..|+.+++
T Consensus       129 ~-leivKyLvE~ga-d~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~-------ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  129 H-LEIVKYLVEHGA-DPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA-------KSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             h-hHHHHHHHHcCC-CCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcch-------hcccCchHHHhhhhcccHHHH
Confidence            9 999999999998 9999999999999999999999999999999999988       589999999999999999999


Q ss_pred             HHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhh
Q 037875          154 LEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQ  189 (204)
Q Consensus       154 ~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~  189 (204)
                      +.|+. +|+.++. |..|.|||..|+.  ..++...++
T Consensus       200 q~Ll~-~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  200 QLLLK-HGAKIDV-DGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HHHHh-CCceeee-cCCCCchHHHHhhhcchHHHHHHh
Confidence            99988 6998887 5669999999973  334444443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.8e-24  Score=167.33  Aligned_cols=156  Identities=13%  Similarity=0.063  Sum_probs=134.6

Q ss_pred             HHHHHHHHhhhccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhh-hhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            4 KVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYI-HKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..++++++|+++|++++..++.||||.|+..++.+++++|++.|++... ...+..+..+.+++|.|+..++ .+++++|
T Consensus       129 n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~-~eIve~L  207 (437)
T PHA02795        129 VEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTV-LEIYKLC  207 (437)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCH-HHHHHHH
Confidence            4679999999999999888889999999999999999999998864211 0111112457899999999998 8999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCC--------HHHHH
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQH--------FELAL  154 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~--------~~~~~  154 (204)
                      +++|+ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+        .++++
T Consensus       208 Is~GA-DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~-------~d~~G~TpLh~Aa~~g~~~~~~~~~~eIve  279 (437)
T PHA02795        208 IPYIE-DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA-------VMSNGYTCLDVAVDRGSVIARRETHLKILE  279 (437)
T ss_pred             HhCcC-CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-------cCCCCCCHHHHHHHcCCcccccccHHHHHH
Confidence            99998 8999999999999999999999999999999999887       58899999999999984        68999


Q ss_pred             HHHHHhchhhcccCC
Q 037875          155 EIAKEYKYLIGEKDM  169 (204)
Q Consensus       155 ~Ll~~~g~~~~~~~~  169 (204)
                      .|+. .|++++....
T Consensus       280 lLL~-~gadI~~~~~  293 (437)
T PHA02795        280 ILLR-EPLSIDCIKL  293 (437)
T ss_pred             HHHh-CCCCCCchhH
Confidence            8888 6888876543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=145.52  Aligned_cols=144  Identities=13%  Similarity=0.101  Sum_probs=122.6

Q ss_pred             ccccc--cccCCchHHHHHHhcCCh----HHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHH---HHHHHHhh
Q 037875           15 HALHV--LTVHDDTVLHMATYFKRD----DLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALP---VADKLLRK   85 (204)
Q Consensus        15 ~~~~~--~~~~~~~~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~---~~~~Ll~~   85 (204)
                      +++++  .+.++.++||.||..|+.    +++++|.+.|..     ++..+..|.||||+|+..++ .+   ++++|+..
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-----~~~~d~~g~t~Lh~Aa~~g~-~~~~~~i~~Ll~~   82 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-----LHRYDHHGRQCTHMVAWYDR-ANAVMKIELLVNM   82 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-----hhccCCCCCcHHHHHHHhCc-cCHHHHHHHHHHc
Confidence            45554  456788999999999998    555567775544     78889999999999999987 44   47899999


Q ss_pred             CCCcccccc-CCCCcHHHHHHHcCCHHHHHHHHh-cccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875           86 APGLLGMRN-NNGETALFRSARYGKADIFNFLAG-KIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus        86 ~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      ++ +++.++ ..|.||||+|+..++.+++++|++ .|++++.       ++..|.||||+|+..++.++++.|+. +|++
T Consensus        83 Ga-din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~-------~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~  153 (166)
T PHA02743         83 GA-DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA-------INYQHETAYHIAYKMRDRRMMEILRA-NGAV  153 (166)
T ss_pred             CC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC-------cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            98 888887 589999999999999999999995 7888776       68899999999999999999999998 6999


Q ss_pred             hcccCCCCCC
Q 037875          164 IGEKDMDGMT  173 (204)
Q Consensus       164 ~~~~~~~g~t  173 (204)
                      ++.++..|..
T Consensus       154 ~~~~~~~~~~  163 (166)
T PHA02743        154 CDDPLSIGLS  163 (166)
T ss_pred             CCCcccCCcc
Confidence            9999877653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.2e-23  Score=167.71  Aligned_cols=174  Identities=16%  Similarity=0.196  Sum_probs=121.8

Q ss_pred             HHHHHHHhhhccccccccCCchHHHHHHh--cCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhc-----CCCHH
Q 037875            5 VIEVCRKISDHALHVLTVHDDTVLHMATY--FKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATS-----SRALP   77 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~L~~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~-----~~~~~   77 (204)
                      .++.++.|++.+.......+.|+++.+..  .++.+++++|++.|++     ++..+..|.||||.++..     +. .+
T Consensus        17 ~~~~v~~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-----vn~~d~~g~TpL~~~~~n~~~~~~~-~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCNPNEIVNEYSIFQKYLQRDSPSTDIVKLFINLGAN-----VNGLDNEYSTPLCTILSNIKDYKHM-LD   90 (489)
T ss_pred             cHHHHHHHHhcCChhhhcccchHHHHHHhCCCCCHHHHHHHHHCCCC-----CCCCCCCCCChHHHHHHhHHhHHhH-HH
Confidence            35667777765432223446666653333  3467888888886655     777778888888877653     44 67


Q ss_pred             HHHHHHhhCCCccccccCCCCcHHHHHHHcC---CHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCC---HH
Q 037875           78 VADKLLRKAPGLLGMRNNNGETALFRSARYG---KADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQH---FE  151 (204)
Q Consensus        78 ~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~---~~  151 (204)
                      ++++|+++|+ +++.++..|.||||+|+..+   +.+++++|+++|++++.       ++..|.||||+|++.++   .+
T Consensus        91 iv~~Ll~~Ga-diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~-------~d~~g~tpL~~a~~~~~~~~~~  162 (489)
T PHA02798         91 IVKILIENGA-DINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL-------LDKDGFTMLQVYLQSNHHIDIE  162 (489)
T ss_pred             HHHHHHHCCC-CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc-------cCCCCCcHHHHHHHcCCcchHH
Confidence            8888888887 78888888888888887764   56788888888887766       57778888888888776   78


Q ss_pred             HHHHHHHHhchhhcccC-CCCCCHhHHhcc------CCcchhhhhhccc
Q 037875          152 LALEIAKEYKYLIGEKD-MDGMTALQLLSC------KPEAFKLKQERGF  193 (204)
Q Consensus       152 ~~~~Ll~~~g~~~~~~~-~~g~t~l~~a~~------~~~~~~~~~~~g~  193 (204)
                      +++.|++ .|++++.++ ..|.||+|.+..      +.++++.+++.|+
T Consensus       163 vv~~Ll~-~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        163 IIKLLLE-KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             HHHHHHH-hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            8877777 488887764 467788887653      2456666666664

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.9e-23  Score=167.72  Aligned_cols=186  Identities=16%  Similarity=0.143  Sum_probs=128.6

Q ss_pred             HHHHHHHHhhhcccccc--ccCCchHHHH--HHhcCChHHHHHHHh--------------------------------hC
Q 037875            4 KVIEVCRKISDHALHVL--TVHDDTVLHM--ATYFKRDDLALKLLD--------------------------------EI   47 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~--~~~~~~~L~~--A~~~~~~~~v~~Ll~--------------------------------~g   47 (204)
                      ...++++.|+++|++++  +..|.||||+  |+..++.+++++|++                                .|
T Consensus       213 n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (672)
T PHA02730        213 LSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYN  292 (672)
T ss_pred             cCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCC
Confidence            35789999999999875  6789999984  556677999999998                                45


Q ss_pred             chhh------------------------------------------------------------------------hhhh
Q 037875           48 PELY------------------------------------------------------------------------IHKM   55 (204)
Q Consensus        48 ~~~~------------------------------------------------------------------------~~~~   55 (204)
                      .+..                                                                        |+++
T Consensus       293 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI  372 (672)
T PHA02730        293 VDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM  372 (672)
T ss_pred             cchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC
Confidence            4431                                                                        1222


Q ss_pred             cccccCCCcHHHHHHhcCCC---HHHHHHHHhhCCC-ccccccCCCCcHHHH---HHHcC---------CHHHHHHHHhc
Q 037875           56 TRQNKAGNTVLHATATSSRA---LPVADKLLRKAPG-LLGMRNNNGETALFR---SARYG---------KADIFNFLAGK  119 (204)
Q Consensus        56 ~~~~~~g~~~l~~a~~~~~~---~~~~~~Ll~~~~~-~~~~~~~~~~t~l~~---a~~~~---------~~~~~~~L~~~  119 (204)
                      +.. ..|.||||+|+..++.   .+++++|+++|+. +++.++..|.||||.   +...+         ..+++++|+++
T Consensus       373 N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~  451 (672)
T PHA02730        373 DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY  451 (672)
T ss_pred             CcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc
Confidence            221 3455666665555431   4666666666542 355555566666652   22121         12345666666


Q ss_pred             ccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCC-CCCCHhHHhcc----CCcchhhhhhccch
Q 037875          120 IADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDM-DGMTALQLLSC----KPEAFKLKQERGFF  194 (204)
Q Consensus       120 ~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~-~g~t~l~~a~~----~~~~~~~~~~~g~~  194 (204)
                      |++++.       +|..|.||||+|+..++.+++++|+. .|++++.++. .|.||+++|+.    +.++++.+++.|+.
T Consensus       452 GADINa-------kD~~G~TPLh~Aa~~~~~eive~LI~-~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        452 MDDIDM-------IDNENKTLLYYAVDVNNIQFARRLLE-YGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             ccchhc-------cCCCCCCHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence            666555       68899999999999999999999988 6999999996 58999999975    35688888888876


Q ss_pred             hhhh
Q 037875          195 KKLL  198 (204)
Q Consensus       195 ~~~~  198 (204)
                      .+.+
T Consensus       524 i~~I  527 (672)
T PHA02730        524 LETM  527 (672)
T ss_pred             HHHH
Confidence            6554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=155.10  Aligned_cols=155  Identities=26%  Similarity=0.279  Sum_probs=137.1

Q ss_pred             ccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcC----CCHHHHHHHHhhCCCcc
Q 037875           15 HALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSS----RALPVADKLLRKAPGLL   90 (204)
Q Consensus        15 ~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~----~~~~~~~~Ll~~~~~~~   90 (204)
                      .-.++-|.+|+|+||||+.++++++|+.||+.|    -++++.++.-|+||+++++...    ...++|..|...|  ++
T Consensus       259 yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSg----vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg--nV  332 (452)
T KOG0514|consen  259 YVVNLADSNGNTALHYAVSHANFDVVSILLDSG----VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG--DV  332 (452)
T ss_pred             HHhhhhcCCCCeeeeeeecccchHHHHHHhccC----cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc--Cc
Confidence            345667999999999999999999999999954    2468999999999999987653    2267888888887  67


Q ss_pred             ccc-cCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCC
Q 037875           91 GMR-NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDM  169 (204)
Q Consensus        91 ~~~-~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~  169 (204)
                      |.+ ..-|.|+|++|+.+|..++++.|+..|+|+|.       +|.+|.|+|+.|+.+|+.|+++.||...++|+...|.
T Consensus       333 NaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNi-------QDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~  405 (452)
T KOG0514|consen  333 NAKASQHGQTALMLAVSHGRVDMVKALLACGADVNI-------QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDV  405 (452)
T ss_pred             chhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCcc-------ccCCccHHHhhhhhhChHHHHHHHhccCcccceeecC
Confidence            776 45689999999999999999999999999987       7999999999999999999999999988999999999


Q ss_pred             CCCCHhHHhccCC
Q 037875          170 DGMTALQLLSCKP  182 (204)
Q Consensus       170 ~g~t~l~~a~~~~  182 (204)
                      +|-|+|.+|...+
T Consensus       406 DgSTAl~IAleag  418 (452)
T KOG0514|consen  406 DGSTALSIALEAG  418 (452)
T ss_pred             CCchhhhhHHhcC
Confidence            9999999997554

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=2.2e-22  Score=140.03  Aligned_cols=139  Identities=15%  Similarity=0.173  Sum_probs=116.2

Q ss_pred             cccccCCchHHHHHHhcCChHHHHHHHhhC-chhhhhhhcccccCCCcHHHHHHhcCCC---HHHHHHHHhhCCCccccc
Q 037875           18 HVLTVHDDTVLHMATYFKRDDLALKLLDEI-PELYIHKMTRQNKAGNTVLHATATSSRA---LPVADKLLRKAPGLLGMR   93 (204)
Q Consensus        18 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~~~l~~a~~~~~~---~~~~~~Ll~~~~~~~~~~   93 (204)
                      +..+..|.||||+|+..|+.++++.|+... ....+..++.++..|.||||+|+..++.   .+++++|++.++ +++.+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga-din~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA-DINAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCC
Confidence            346788999999999999999999986532 1113455889999999999999999873   378899999988 78888


Q ss_pred             cC-CCCcHHHHHHHcCCHHHHHHHHh-cccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhc
Q 037875           94 NN-NGETALFRSARYGKADIFNFLAG-KIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG  165 (204)
Q Consensus        94 ~~-~~~t~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~  165 (204)
                      +. .|.||||+|+..++.+++++|+. .|++++.       ++..|+||||+|+..++.++++.|+. +++...
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~-------~n~~g~tpL~~A~~~~~~~iv~~L~~-~~~~~~  159 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF-------CNADNKSPFELAIDNEDVAMMQILRE-IVATSR  159 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc-------CCCCCCCHHHHHHHCCCHHHHHHHHH-HHHHhc
Confidence            75 89999999999999999999997 4777765       58899999999999999999988887 555543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.89  E-value=9.2e-23  Score=171.18  Aligned_cols=174  Identities=24%  Similarity=0.260  Sum_probs=145.1

Q ss_pred             HHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      .+....+...|.+++  ...|.||||+|+..|+.+.++.|++.++.     .+.....|.+++|.+...+. ..+++.++
T Consensus       454 ~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-----~~~~~~~~l~~lhla~~~~~-v~~~~~l~  527 (1143)
T KOG4177|consen  454 LQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-----DNLDAKKGLTPLHLAADEDT-VKVAKILL  527 (1143)
T ss_pred             hhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCc-----cCccchhccchhhhhhhhhh-HHHHHHHh
Confidence            344555566666554  56789999999999999999988886543     56667788999999998888 78888888


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      .+|+ +++.++.+++||||+|+.+|+.+++++|+++|++++.       ++..|+||||.|+..|+.+|+..|++ +|++
T Consensus       528 ~~ga-~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~a-------k~~~G~TPLH~Aa~~G~~~i~~LLlk-~GA~  598 (1143)
T KOG4177|consen  528 EHGA-NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNA-------KDKLGYTPLHQAAQQGHNDIAELLLK-HGAS  598 (1143)
T ss_pred             hcCC-ceehhcccccchHHHHHhcCCchHHHHhhhCCccccc-------cCCCCCChhhHHHHcChHHHHHHHHH-cCCC
Confidence            8888 8889999999999999999999999999999999887       57999999999999999999988888 6999


Q ss_pred             hcccCCCCCCHhHHhccC--Ccchhhhhhccch
Q 037875          164 IGEKDMDGMTALQLLSCK--PEAFKLKQERGFF  194 (204)
Q Consensus       164 ~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~  194 (204)
                      +|..+.+|.|||++|...  .+..+.+...+..
T Consensus       599 vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  599 VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999999999999744  3455555444443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=139.03  Aligned_cols=136  Identities=10%  Similarity=0.056  Sum_probs=108.0

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCH---HHHHHHHhhCCCcccccc-C
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRAL---PVADKLLRKAPGLLGMRN-N   95 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~---~~~~~Ll~~~~~~~~~~~-~   95 (204)
                      .+..|.||||+|+..|+.+.+........+.....++..+..|.||||+|+..++ .   +++++|+..++ +++.++ .
T Consensus        13 ~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~-~~~~e~v~~Ll~~ga-din~~~~~   90 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDK-ADPQEKLKLLMEWGA-DINGKERV   90 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCc-hhHHHHHHHHHHcCC-CccccCCC
Confidence            4678999999999999843222222211121223355678899999999999987 4   46889999998 888887 4


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhc-ccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhc
Q 037875           96 NGETALFRSARYGKADIFNFLAGK-IADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG  165 (204)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~  165 (204)
                      .|.||||+|+..++.+++++|+.. |++++.       ++..|.||||+|+..|+.++++.|+. .|++.+
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~-------~~~~g~tpL~~A~~~~~~~i~~~Ll~-~ga~~~  153 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEI-------LNYAFKTPYYVACERHDAKMMNILRA-KGAQCK  153 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc-------ccCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence            899999999999999999999974 787776       68899999999999999999998888 687764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.88  E-value=1.3e-21  Score=158.29  Aligned_cols=180  Identities=13%  Similarity=0.080  Sum_probs=118.7

Q ss_pred             HHHHHHhhhcccccc--ccCCchHHHHHHhcC--ChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHh--cCCCHHHH
Q 037875            6 IEVCRKISDHALHVL--TVHDDTVLHMATYFK--RDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATAT--SSRALPVA   79 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~--~~~~~~~~   79 (204)
                      .++++.|+++|++++  +..|.||||+|+..+  +.+++++|++.|+++   .++..+..+.+|++.++.  .++ .+++
T Consensus        57 ~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~---~~~~~~~~~d~~l~~y~~s~n~~-~~~v  132 (672)
T PHA02730         57 IKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNA---SNELTSNINDFDLYSYMSSDNID-LRLL  132 (672)
T ss_pred             HHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCC---CcccccccCCchHHHHHHhcCCc-HHHH
Confidence            567777777776654  445777777777755  577777777765432   234455556677777666  555 6677


Q ss_pred             HHHHhhCCCcccccc-----CCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCc-cHHHHH------HHh
Q 037875           80 DKLLRKAPGLLGMRN-----NNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS-TVLHMA------VIS  147 (204)
Q Consensus        80 ~~Ll~~~~~~~~~~~-----~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~-t~l~~a------~~~  147 (204)
                      ++|+..+..+++...     ..|.+|+.++...++.+++++|+++|++++...-...+.+.... |.||++      ...
T Consensus       133 k~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~  212 (672)
T PHA02730        133 KYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESES  212 (672)
T ss_pred             HHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhc
Confidence            777753333444432     26778888888888888888888888877422100011233333 445533      345


Q ss_pred             CCHHHHHHHHHHhchhhcccCCCCCCHhHHhc--cC--Ccchhhhhh
Q 037875          148 QHFELALEIAKEYKYLIGEKDMDGMTALQLLS--CK--PEAFKLKQE  190 (204)
Q Consensus       148 ~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~--~~--~~~~~~~~~  190 (204)
                      +..++++.|++ +|++++.+|..|.||||++.  ..  .+++++++.
T Consensus       213 n~~eiv~lLIs-~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        213 LSKDVIKCLID-NNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            68899999999 69999999999999999643  22  678888777

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=9.9e-22  Score=136.80  Aligned_cols=129  Identities=18%  Similarity=0.224  Sum_probs=109.6

Q ss_pred             hcccccCCCcHHHHHHhcCCCHHHHHHHHhh------CCCccccccCCCCcHHHHHHHcCC----HHHHHHHHhcccCCC
Q 037875           55 MTRQNKAGNTVLHATATSSRALPVADKLLRK------APGLLGMRNNNGETALFRSARYGK----ADIFNFLAGKIADYD  124 (204)
Q Consensus        55 ~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~L~~~~~~~~  124 (204)
                      ++.++..|.||||+|+..|+ .++++.|+..      +. +++.++..|.||||+|+..|+    .+++++|++.|++++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~-~~~v~~l~~~~~~~~~ga-~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin   91 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGC-FDIIARFTPFIRGDCHAA-ALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN   91 (169)
T ss_pred             hhccccCCCCHHHHHHHcCC-HHHHHHHHHHhccchhhh-hhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Confidence            44677899999999999999 8999988643      34 688899999999999999998    588999999999988


Q ss_pred             CCCCCccccCC-CCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC--cchhhhhhcc
Q 037875          125 QPSKQPFLQRN-DQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP--EAFKLKQERG  192 (204)
Q Consensus       125 ~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~~~g  192 (204)
                      .       ++. .|+||||+|+..++.+++++|+...|++++.+|.+|.|||++|+..+  ++.+.+...+
T Consensus        92 ~-------~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         92 A-------QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             C-------CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            6       464 89999999999999999999997459999999999999999998554  5555555443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.5e-21  Score=144.41  Aligned_cols=155  Identities=17%  Similarity=0.055  Sum_probs=125.3

Q ss_pred             cccccCCchH-HHHHHhcCChHHHHHHHhhCchhhhhhhccc----ccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccc
Q 037875           18 HVLTVHDDTV-LHMATYFKRDDLALKLLDEIPELYIHKMTRQ----NKAGNTVLHATATSSRALPVADKLLRKAPGLLGM   92 (204)
Q Consensus        18 ~~~~~~~~~~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~----~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~   92 (204)
                      ..++..+.++ ||.|+..++.+++++|++.|++     ++.+    +..|.||||+|+..++ .+++++|+++|+ +++.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd-----iN~~~~~sd~~g~TpLh~Aa~~~~-~eivklLL~~GA-DVN~   98 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGAD-----PEAPFPLSENSKTNPLIYAIDCDN-DDAAKLLIRYGA-DVNR   98 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC-----ccccCcccCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CcCc
Confidence            4466666655 6777778999999999998877     6665    4589999999999999 899999999998 8887


Q ss_pred             c-cCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCC
Q 037875           93 R-NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDG  171 (204)
Q Consensus        93 ~-~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g  171 (204)
                      . +..|.||||.|+..++.+++++|++.|++++.       ++..|.||+|+|+..++.+++..+.   |.   ..+..+
T Consensus        99 ~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~-------kd~~G~TpL~~A~~~~~~~~~~~~~---~~---~~~~~~  165 (300)
T PHA02884         99 YAEEAKITPLYISVLHGCLKCLEILLSYGADINI-------QTNDMVTPIELALMICNNFLAFMIC---DN---EISNFY  165 (300)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHhCChhHHHHhc---CC---cccccc
Confidence            5 56799999999999999999999999999887       5889999999999988888764332   32   246677


Q ss_pred             CCHhHHhccCCcchhhhhhccc
Q 037875          172 MTALQLLSCKPEAFKLKQERGF  193 (204)
Q Consensus       172 ~t~l~~a~~~~~~~~~~~~~g~  193 (204)
                      .+|.+++. +.++.+.+...+.
T Consensus       166 ~~~~~~~~-n~ei~~~Lish~v  186 (300)
T PHA02884        166 KHPKKILI-NFDILKILVSHFI  186 (300)
T ss_pred             cChhhhhc-cHHHHHHHHHHHH
Confidence            78888753 4455566655555

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=9.4e-22  Score=136.38  Aligned_cols=136  Identities=16%  Similarity=0.210  Sum_probs=115.8

Q ss_pred             hhhhhcccccCCCcHHHHHHhcCCCH----HHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHH---HHHHHhcccCC
Q 037875           51 YIHKMTRQNKAGNTVLHATATSSRAL----PVADKLLRKAPGLLGMRNNNGETALFRSARYGKADI---FNFLAGKIADY  123 (204)
Q Consensus        51 ~~~~~~~~~~~g~~~l~~a~~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~L~~~~~~~  123 (204)
                      ++++++..+..+.+++|.|+..++ .    +++++|.+.+. .++..+..|+||||+|+..|+.+.   +++|++.|+++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~-~~~l~~~~~~l~~~g~-~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGN-IYELMEVAPFISGDGH-LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCC-HHHHHHHHHHHhhcch-hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            666788888889999999999998 5    45567777776 778889999999999999988654   79999999998


Q ss_pred             CCCCCCccccC-CCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchh
Q 037875          124 DQPSKQPFLQR-NDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       124 ~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      +.       ++ ..|.||||+|+..++.+++++|+...|++++.++..|.||||+|+..  .+++++++..|+..
T Consensus        87 n~-------~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         87 NA-------RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             CC-------CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            86       46 57999999999999999999999646999999999999999999854  46778887777543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=2.7e-21  Score=159.07  Aligned_cols=174  Identities=16%  Similarity=0.120  Sum_probs=133.9

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCC-----------------------------------hHHHHHHHhhC
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKR-----------------------------------DDLALKLLDEI   47 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~-----------------------------------~~~v~~Ll~~g   47 (204)
                      ..++++.|+++|++++  +..|.||||+|+..|+                                   .+++++|++. 
T Consensus        47 ~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~-  125 (661)
T PHA02917         47 NVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEH-  125 (661)
T ss_pred             cHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHc-
Confidence            4678888888888765  4567888887777655                                   3445555553 


Q ss_pred             chhhhhhhcccccCCCcHHHHHH--hcCCCHHHHHHHHhhCCCccccccC---CC-----------CcHHHHHHH-----
Q 037875           48 PELYIHKMTRQNKAGNTVLHATA--TSSRALPVADKLLRKAPGLLGMRNN---NG-----------ETALFRSAR-----  106 (204)
Q Consensus        48 ~~~~~~~~~~~~~~g~~~l~~a~--~~~~~~~~~~~Ll~~~~~~~~~~~~---~~-----------~t~l~~a~~-----  106 (204)
                          |++++.++..|.||||.++  ..++ .+++++|+++|+ +++..+.   .|           .||||+|+.     
T Consensus       126 ----Gadin~~d~~g~T~L~~~~a~~~~~-~eivklLi~~Ga-~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~  199 (661)
T PHA02917        126 ----GFDLSVKCENHRSVIENYVMTDDPV-PEIIDLFIENGC-SVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYS  199 (661)
T ss_pred             ----CCCCCccCCCCccHHHHHHHccCCC-HHHHHHHHHcCC-CccccccccccccccccccccccccHHHHHHhhcccc
Confidence                4458899999999999654  4567 999999999998 7765432   23           599999986     


Q ss_pred             ------cCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCH--HHHHHHHHHhchhhc----ccCCCCCCH
Q 037875          107 ------YGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHF--ELALEIAKEYKYLIG----EKDMDGMTA  174 (204)
Q Consensus       107 ------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~~g~~~~----~~~~~g~t~  174 (204)
                            +++.+++++|+++|++++.       ++..|.||||+|+..|+.  ++++.|+.  |++++    ..+..|.+|
T Consensus       200 ~~~~~~~~~~eiv~~Li~~Gadvn~-------~d~~G~TpLh~A~~~g~~~~eivk~Li~--g~d~~~~~~~~~~~~~~~  270 (661)
T PHA02917        200 ESDTRAYVRPEVVKCLINHGIKPSS-------IDKNYCTALQYYIKSSHIDIDIVKLLMK--GIDNTAYSYIDDLTCCTR  270 (661)
T ss_pred             cccccccCcHHHHHHHHHCCCCccc-------CCCCCCcHHHHHHHcCCCcHHHHHHHHh--CCcccccccccCcccccc
Confidence                  4689999999999999887       589999999999999985  79988864  88775    456678888


Q ss_pred             hHHhcc-----------CCcchhhhhhccch
Q 037875          175 LQLLSC-----------KPEAFKLKQERGFF  194 (204)
Q Consensus       175 l~~a~~-----------~~~~~~~~~~~g~~  194 (204)
                      +++++-           ..++.+.+++.|..
T Consensus       271 ~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        271 GIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             hHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            888871           23667788888854

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=8.6e-23  Score=171.34  Aligned_cols=187  Identities=21%  Similarity=0.170  Sum_probs=151.6

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+.++.++.+|.+.+  ...|.||||.|+..++..+++.+++.|++     .+..+..|.||+|.|+..+...+....+
T Consensus       386 ~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~-----~~~~~~lG~T~lhvaa~~g~~~~~~~~l  460 (1143)
T KOG4177|consen  386 RVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS-----PNAKAKLGYTPLHVAAKKGRYLQIARLL  460 (1143)
T ss_pred             chhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCC-----hhhHhhcCCChhhhhhhcccHhhhhhhH
Confidence            4566777777776543  45678888888888888888888886655     7788888999999999988326777778


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCC--------------------------CCCccccCCC
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQP--------------------------SKQPFLQRND  136 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~--------------------------~~~~~~~~~~  136 (204)
                      ++.+. +++...+.|.||||.|++.|+.++++.|++.++..+..                          +.+.+.++..
T Consensus       461 ~~~g~-~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r  539 (1143)
T KOG4177|consen  461 LQYGA-DPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGR  539 (1143)
T ss_pred             hhcCC-CcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhccc
Confidence            88887 88889999999999999999999999998877443221                          3345678889


Q ss_pred             CccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchhhhh
Q 037875          137 QSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKKLL  198 (204)
Q Consensus       137 g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~~~  198 (204)
                      |.||||.|+.+|+.++|++||+ .|+|++.+++.|+||||.|+..  .+++.++.+.|+....-
T Consensus       540 ~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~  602 (1143)
T KOG4177|consen  540 GYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAA  602 (1143)
T ss_pred             ccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcc
Confidence            9999999999999999999999 6999999999999999999844  58888999999766443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=1.8e-21  Score=134.57  Aligned_cols=143  Identities=20%  Similarity=0.162  Sum_probs=124.6

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcH
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETA  100 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  100 (204)
                      +--+.+|+.+++..-+.+.+..+.+.       .+|..|..|.|||.||+..|+ .++|++|++.|+ ++....+...++
T Consensus       126 s~~p~s~~slsVhql~L~~~~~~~~n-------~VN~~De~GfTpLiWAaa~G~-i~vV~fLL~~GA-dp~~lgk~resA  196 (296)
T KOG0502|consen  126 SLMPWSPLSLSVHQLHLDVVDLLVNN-------KVNACDEFGFTPLIWAAAKGH-IPVVQFLLNSGA-DPDALGKYRESA  196 (296)
T ss_pred             ccccCChhhHHHHHHHHHHHHHHhhc-------cccCccccCchHhHHHHhcCc-hHHHHHHHHcCC-Chhhhhhhhhhh
Confidence            44578889999888877777666653       388889999999999999999 899999999998 788888888899


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc
Q 037875          101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC  180 (204)
Q Consensus       101 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~  180 (204)
                      |.+|++.|..+++++|++++.++|.+       |..|-|||.+|++.++.+|++.||. .|+++++.+..|++++..|..
T Consensus       197 LsLAt~ggytdiV~lLL~r~vdVNvy-------DwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAVa  268 (296)
T KOG0502|consen  197 LSLATRGGYTDIVELLLTREVDVNVY-------DWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVA  268 (296)
T ss_pred             HhHHhcCChHHHHHHHHhcCCCccee-------ccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHH
Confidence            99999999999999999999998874       8889999999999999999999999 599999999999999998863

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=1.7e-21  Score=134.58  Aligned_cols=147  Identities=16%  Similarity=0.110  Sum_probs=118.9

Q ss_pred             hccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccc
Q 037875           14 DHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMR   93 (204)
Q Consensus        14 ~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~   93 (204)
                      +.-.+.-|+.|.|||.+|+..|+.+.|++|++.|++     +....+...++|.+|+..|. .++|++|+.+.. ++|.-
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-----p~~lgk~resALsLAt~ggy-tdiV~lLL~r~v-dVNvy  222 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-----PDALGKYRESALSLATRGGY-TDIVELLLTREV-DVNVY  222 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHcCCC-----hhhhhhhhhhhHhHHhcCCh-HHHHHHHHhcCC-Cccee
Confidence            333455577889999999999999999999997776     55566677788999988888 889999998887 88888


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCC
Q 037875           94 NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMT  173 (204)
Q Consensus        94 ~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t  173 (204)
                      |.+|.|||-+|++.++.++++.|++.|++++.       .+..|.+++..|+..|+. +++.++++ -++..-+|..-++
T Consensus       223 DwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~-------e~dsGy~~mdlAValGyr-~Vqqvie~-h~lkl~Q~~~~~~  293 (296)
T KOG0502|consen  223 DWNGGTPLLYAVRGNHVKCVESLLNSGADVTQ-------EDDSGYWIMDLAVALGYR-IVQQVIEK-HALKLCQDSEKRT  293 (296)
T ss_pred             ccCCCceeeeeecCChHHHHHHHHhcCCCccc-------ccccCCcHHHHHHHhhhH-HHHHHHHH-HHHHHhhcccCCC
Confidence            88899999999999999999999998888776       478888999999888888 67777774 5666777766677


Q ss_pred             HhH
Q 037875          174 ALQ  176 (204)
Q Consensus       174 ~l~  176 (204)
                      |+|
T Consensus       294 ~~~  296 (296)
T KOG0502|consen  294 PLH  296 (296)
T ss_pred             CCC
Confidence            654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.2e-20  Score=125.80  Aligned_cols=141  Identities=21%  Similarity=0.179  Sum_probs=126.0

Q ss_pred             HHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHH
Q 037875           27 VLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSAR  106 (204)
Q Consensus        27 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  106 (204)
                      .+.+|+..+....|+.|++..++-    +|.+|.+|+||||.|+.+++ .++++.|+..++ +.+.+...|+||||-||.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~----vNtrD~D~YTpLHRAaYn~h-~div~~ll~~gA-n~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANH----VNTRDEDEYTPLHRAAYNGH-LDIVHELLLSGA-NKEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccc----ccccccccccHHHHHHhcCc-hHHHHHHHHccC-CcccccccCccchhhhhc
Confidence            367899999999999999987773    99999999999999999999 899999999998 899999999999999999


Q ss_pred             cCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCH-HHHHHHHHHhchhhcccCCCCCCHhHHhcc
Q 037875          107 YGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHF-ELALEIAKEYKYLIGEKDMDGMTALQLLSC  180 (204)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~  180 (204)
                      -.+.+++..|+.+|+|++.       ......||||.|+...+. ..+.+||...+.++..++..+.||+.+|-.
T Consensus       140 WnN~~va~~LLqhgaDVnA-------~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNA-------QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             ccchhHHHHHHhccCcccc-------cccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            9999999999999999997       467778999999987654 456666666788899999999999998853

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=2.9e-20  Score=156.45  Aligned_cols=177  Identities=19%  Similarity=0.165  Sum_probs=130.5

Q ss_pred             HHHHHHhhhc--ccccc--ccCCchHHH-HHHhcCChHHHHHHHhhCch-hhh----------------------hh---
Q 037875            6 IEVCRKISDH--ALHVL--TVHDDTVLH-MATYFKRDDLALKLLDEIPE-LYI----------------------HK---   54 (204)
Q Consensus         6 ~~~~~~l~~~--~~~~~--~~~~~~~L~-~A~~~~~~~~v~~Ll~~g~~-~~~----------------------~~---   54 (204)
                      ++.++.++++  +.+++  |..|.|||| .|+..++.++++.|++.|.. ..|                      ..   
T Consensus        30 ~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~  109 (743)
T TIGR00870        30 LASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFR  109 (743)
T ss_pred             HHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhccc
Confidence            4556666766  55543  566888888 77777778888888777620 000                      00   


Q ss_pred             -------hc----ccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccccc--------------CCCCcHHHHHHHcCC
Q 037875           55 -------MT----RQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRN--------------NNGETALFRSARYGK  109 (204)
Q Consensus        55 -------~~----~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~~t~l~~a~~~~~  109 (204)
                             .+    ..+..|.||||+|+..++ .+++++|+++|+ +++.++              ..|.+|||.|+..|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~-~eiVklLL~~GA-dv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~  187 (743)
T TIGR00870       110 KSGPLELANDQYTSEFTPGITALHLAAHRQN-YEIVKLLLERGA-SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS  187 (743)
T ss_pred             ccCchhhhccccccccCCCCcHHHHHHHhCC-HHHHHHHHhCCC-CCCcCcCCchhhcCCCCCcccccccHHHHHHHhCC
Confidence                   00    112469999999999999 899999999998 676542              358899999999999


Q ss_pred             HHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhC---------CHHHHHHHHHHhchhh-------cccCCCCCC
Q 037875          110 ADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQ---------HFELALEIAKEYKYLI-------GEKDMDGMT  173 (204)
Q Consensus       110 ~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~~g~~~-------~~~~~~g~t  173 (204)
                      .+++++|++.|++++.       +|..|+||||+|+..+         ...+.+.++. .++..       +.+|.+|.|
T Consensus       188 ~~iv~lLl~~gadin~-------~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~-ll~~~~~~~el~~i~N~~g~T  259 (743)
T TIGR00870       188 PSIVALLSEDPADILT-------ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALS-LLDKLRDSKELEVILNHQGLT  259 (743)
T ss_pred             HHHHHHHhcCCcchhh-------HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHhccCChHhhhhhcCCCCCC
Confidence            9999999999988776       6889999999999986         2234444544 34443       667999999


Q ss_pred             HhHHhcc--CCcchhhhhhcc
Q 037875          174 ALQLLSC--KPEAFKLKQERG  192 (204)
Q Consensus       174 ~l~~a~~--~~~~~~~~~~~g  192 (204)
                      ||++|+.  +.++++.+++.+
T Consensus       260 PL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       260 PLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             chhhhhhcCCccHHHHHHHHH
Confidence            9999984  457777777654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=9.5e-21  Score=130.02  Aligned_cols=134  Identities=20%  Similarity=0.177  Sum_probs=107.3

Q ss_pred             hhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCC------CccccccCCCCcHHHHHHHcCCHH---HHHHHHhcccC
Q 037875           52 IHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAP------GLLGMRNNNGETALFRSARYGKAD---IFNFLAGKIAD  122 (204)
Q Consensus        52 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~------~~~~~~~~~~~t~l~~a~~~~~~~---~~~~L~~~~~~  122 (204)
                      ..+.+.++..|.||||+|+..|+ .+  +++...+.      ..+...+..|.||||+|+..|+.+   ++++|++.|++
T Consensus         7 ~~~~~~~d~~g~tpLh~A~~~g~-~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad   83 (154)
T PHA02736          7 IIFASEPDIEGENILHYLCRNGG-VT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD   83 (154)
T ss_pred             hhHHHhcCCCCCCHHHHHHHhCC-HH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC
Confidence            34577888999999999999997 43  33322211      123446889999999999999864   68899999999


Q ss_pred             CCCCCCCccccC-CCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchh
Q 037875          123 YDQPSKQPFLQR-NDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       123 ~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      ++.       ++ ..|.||||+|+..++.+++++|+...|++++.++..|.|||++|+..  .++++.++..|...
T Consensus        84 in~-------~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         84 ING-------KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccc-------cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            887       45 48999999999999999999999745999999999999999999854  57778887777643

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-20  Score=144.54  Aligned_cols=159  Identities=23%  Similarity=0.182  Sum_probs=131.9

Q ss_pred             HHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHh
Q 037875            7 EVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR   84 (204)
Q Consensus         7 ~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~   84 (204)
                      +=++.|+..|.+++  +.+|.|+||-+|.-.+.+||++|++.|++     +|..|..|.||+|.|+..++ ..++++|++
T Consensus        54 ~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-----Vn~~d~e~wtPlhaaascg~-~~i~~~li~  127 (527)
T KOG0505|consen   54 EEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-----VNAQDNEGWTPLHAAASCGY-LNIVEYLIQ  127 (527)
T ss_pred             HHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCC-----ccccccccCCcchhhccccc-HHHHHHHHH
Confidence            44566777776554  56799999999999999999999996665     89999999999999999999 899999998


Q ss_pred             hCCCcccccc-----------------------------------------------------------CCCCcHHHHHH
Q 037875           85 KAPGLLGMRN-----------------------------------------------------------NNGETALFRSA  105 (204)
Q Consensus        85 ~~~~~~~~~~-----------------------------------------------------------~~~~t~l~~a~  105 (204)
                      .|+ ++...+                                                           ..|.|.||+|+
T Consensus       128 ~gA-~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAa  206 (527)
T KOG0505|consen  128 HGA-NLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAA  206 (527)
T ss_pred             hhh-hhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHH
Confidence            877 222221                                                           25889999999


Q ss_pred             HcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc
Q 037875          106 RYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC  180 (204)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~  180 (204)
                      ..|..++.++|+..|.+++.       +|.+|+||||.|+..|..+.++.|++ +|++++.++..|.||+.+|..
T Consensus       207 a~Gy~e~~~lLl~ag~~~~~-------~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  207 ANGYTEVAALLLQAGYSVNI-------KDYDGWTPLHAAAHWGQEDACELLVE-HGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             hhhHHHHHHHHHHhccCccc-------ccccCCCcccHHHHhhhHhHHHHHHH-hhcccchhhhcCCCCccchhh
Confidence            99999999999999888776       68899999999999999999987777 699999999999999988853

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.4e-19  Score=134.99  Aligned_cols=117  Identities=16%  Similarity=0.125  Sum_probs=101.6

Q ss_pred             hcccccCCCcH-HHHHHhcCCCHHHHHHHHhhCCCccccc----cCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCC
Q 037875           55 MTRQNKAGNTV-LHATATSSRALPVADKLLRKAPGLLGMR----NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQ  129 (204)
Q Consensus        55 ~~~~~~~g~~~-l~~a~~~~~~~~~~~~Ll~~~~~~~~~~----~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~  129 (204)
                      +..+|..|.++ ||.|+..++ .+++++|+++|+ +++.+    +..|.||||+|+..++.+++++|+++|++++..   
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~-~eivk~LL~~GA-diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~---   99 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHY-TDIIDAILKLGA-DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRY---   99 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCC-HHHHHHHHHCCC-CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcc---
Confidence            44667777776 555666677 899999999998 78876    458999999999999999999999999998862   


Q ss_pred             ccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc
Q 037875          130 PFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC  180 (204)
Q Consensus       130 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~  180 (204)
                         .+..|.||||+|+..++.++++.|+. .|++++.++..|.|||++|+.
T Consensus       100 ---~~~~g~TpLh~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884        100 ---AEEAKITPLYISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELALM  146 (300)
T ss_pred             ---cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHH
Confidence               14579999999999999999999999 699999999999999999974

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=5.3e-20  Score=132.35  Aligned_cols=117  Identities=24%  Similarity=0.197  Sum_probs=93.9

Q ss_pred             ccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccccc
Q 037875           15 HALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRN   94 (204)
Q Consensus        15 ~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~   94 (204)
                      +.++.-|..|.+|||+||..|+..+++.|+.+|+.     +|..+....||||+|+..|+ .++|..|++..+ +++..+
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgar-----vn~tnmgddtplhlaaahgh-rdivqkll~~ka-dvnavn   97 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-----VNSTNMGDDTPLHLAAAHGH-RDIVQKLLSRKA-DVNAVN   97 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccc-----cccccCCCCcchhhhhhccc-HHHHHHHHHHhc-ccchhh
Confidence            34556677788888888888888888888887776     77777778888888888888 788888888877 788888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHH
Q 037875           95 NNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV  145 (204)
Q Consensus        95 ~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  145 (204)
                      ..|.|||||||.-|.-.+.+-|+..|+.++.       .+..|.||+..|-
T Consensus        98 ehgntplhyacfwgydqiaedli~~ga~v~i-------cnk~g~tpldkak  141 (448)
T KOG0195|consen   98 EHGNTPLHYACFWGYDQIAEDLISCGAAVNI-------CNKKGMTPLDKAK  141 (448)
T ss_pred             ccCCCchhhhhhhcHHHHHHHHHhccceeee-------cccCCCCchhhhc
Confidence            8888888888888888888888888887766       4778888887653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=7.6e-20  Score=153.91  Aligned_cols=156  Identities=17%  Similarity=0.083  Sum_probs=124.9

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHH-HHHhcCCCHHHHHHHHhhCCC-cc---------
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLH-ATATSSRALPVADKLLRKAPG-LL---------   90 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~-~a~~~~~~~~~~~~Ll~~~~~-~~---------   90 (204)
                      ..+...++.|+..|+.+.++.+++.+.   +.++|..|..|.|||| .|+..++ .+++++|+..+.. ..         
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~---~~~in~~d~~G~t~Lh~~A~~~~~-~eiv~lLl~~g~~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPK---KLNINCPDRLGRSALFVAAIENEN-LELTELLLNLSCRGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhcccc---ccCCCCcCccchhHHHHHHHhcCh-HHHHHHHHhCCCCCCcChHHHHHHH
Confidence            356789999999999999999999732   3348888999999999 7777777 8999999887720 00         


Q ss_pred             -----------------c----------c----ccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCcc-------c
Q 037875           91 -----------------G----------M----RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPF-------L  132 (204)
Q Consensus        91 -----------------~----------~----~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~-------~  132 (204)
                                       .          .    ....|.||||+|+..|+.++++.|+++|++++.......       -
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence                             0          0    113589999999999999999999999999885321100       0


Q ss_pred             cCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC
Q 037875          133 QRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP  182 (204)
Q Consensus       133 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~  182 (204)
                      ....|.||||.|+..|+.++++.|++ .|+|++.+|..|+||||+|+..+
T Consensus       171 ~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       171 SFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhh
Confidence            12358999999999999999999988 69999999999999999998664

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2.4e-20  Score=134.09  Aligned_cols=130  Identities=22%  Similarity=0.284  Sum_probs=114.8

Q ss_pred             hhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccc
Q 037875           53 HKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFL  132 (204)
Q Consensus        53 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~  132 (204)
                      .+.|.-|..|.+|||||+..|+ ..++++|++.|+ -++..+....||||+|+.+|+.++++.|+...+|+|.       
T Consensus        25 hdln~gddhgfsplhwaakegh-~aivemll~rga-rvn~tnmgddtplhlaaahghrdivqkll~~kadvna-------   95 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGH-VAIVEMLLSRGA-RVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA-------   95 (448)
T ss_pred             cccccccccCcchhhhhhhccc-HHHHHHHHhccc-ccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch-------
Confidence            3578888999999999999999 899999999998 6888888889999999999999999999999999887       


Q ss_pred             cCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc--cCCcchhhhhhcc
Q 037875          133 QRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS--CKPEAFKLKQERG  192 (204)
Q Consensus       133 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g  192 (204)
                      .+..|+|||||||..|+..+++-|+. .|+.++.-+++|.||+..|-  ....+.+..++.|
T Consensus        96 vnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~g  156 (448)
T KOG0195|consen   96 VNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHG  156 (448)
T ss_pred             hhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhC
Confidence            69999999999999999999999999 79999999999999999884  2333444444444

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=7.2e-19  Score=141.46  Aligned_cols=186  Identities=17%  Similarity=0.140  Sum_probs=144.0

Q ss_pred             HHHHHhhhcccc-------ccccCCchHHHHHHhcCChHHHHHHHhhCchhhh----hhhccc--------------ccC
Q 037875            7 EVCRKISDHALH-------VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYI----HKMTRQ--------------NKA   61 (204)
Q Consensus         7 ~~~~~l~~~~~~-------~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~----~~~~~~--------------~~~   61 (204)
                      ++++.|++.-..       -....|+||||+|+.+.+.++|+.|++.|+|+|.    .+....              .+.
T Consensus       160 ~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~Yf  239 (782)
T KOG3676|consen  160 ELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYF  239 (782)
T ss_pred             HHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeee
Confidence            555555554322       1234699999999999999999999999999762    222222              346


Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHH
Q 037875           62 GNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL  141 (204)
Q Consensus        62 g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l  141 (204)
                      |..||.+|+..++ ++++++|+++++ +++.+|.+|+|.||..+..-..++...++++|++     .....+|..|-|||
T Consensus       240 GEyPLSfAAC~nq-~eivrlLl~~gA-d~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-----~l~~v~N~qgLTPL  312 (782)
T KOG3676|consen  240 GEYPLSFAACTNQ-PEIVRLLLAHGA-DPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-----ALEHVRNNQGLTPL  312 (782)
T ss_pred             ccCchHHHHHcCC-HHHHHHHHhcCC-CCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-----ccccccccCCCChH
Confidence            8899999999999 899999999998 9999999999999999999889999999999998     11233799999999


Q ss_pred             HHHHHhCCHHHHHHHHHH-h------------chhhcccCC--CCCCHhHHhccCCcchhhhhhccchhhhhc
Q 037875          142 HMAVISQHFELALEIAKE-Y------------KYLIGEKDM--DGMTALQLLSCKPEAFKLKQERGFFKKLLH  199 (204)
Q Consensus       142 ~~a~~~~~~~~~~~Ll~~-~------------g~~~~~~~~--~g~t~l~~a~~~~~~~~~~~~~g~~~~~~~  199 (204)
                      ..|++.|..++++.+++. .            ..+.+..|.  +..++|.+.+-........+..|.+.++++
T Consensus       313 tLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~eHl~Ll~~~i~~LL~  385 (782)
T KOG3676|consen  313 TLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKNEHLELLDGPIEELLE  385 (782)
T ss_pred             HHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcCCcHHHHHHHhHHHHHHHH
Confidence            999999999999999996 1            223333332  445777777765555555566667666665

>PHA02792 ankyrin-like protein; Provisional

Probab=99.79  E-value=1.3e-18  Score=139.74  Aligned_cols=174  Identities=12%  Similarity=0.035  Sum_probs=138.8

Q ss_pred             HHHhhhcccccc-ccCCchHHHHHHhcCC-hHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhC
Q 037875            9 CRKISDHALHVL-TVHDDTVLHMATYFKR-DDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKA   86 (204)
Q Consensus         9 ~~~l~~~~~~~~-~~~~~~~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~   86 (204)
                      .+.|++.|+++- .+++.||||.-....+ ..-++.++..|..     ++..+.+|.+++|+-+..+...|++++|+++|
T Consensus        21 ~~~l~~~g~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~G   95 (631)
T PHA02792         21 AQSLIESGANPLYEYDGETPLKAYVTKKNNNIKNDVVILLLSS-----VDYKNINDFDIFEYLCSDNIDIELLKLLISKG   95 (631)
T ss_pred             HHHHHHcCCCcccccCCCccHHHHHhhhhhhHHHHHHHHHHhC-----CCcCccCCccHHHHHHHhcccHHHHHHHHHcC
Confidence            468899998753 4668899998777665 3456666665555     77888889999998544443399999999999


Q ss_pred             CCccccccCCCCcHHHHHHH-cCCHHHHHHHHhcccCCCCC---C--------------------------CCccccCCC
Q 037875           87 PGLLGMRNNNGETALFRSAR-YGKADIFNFLAGKIADYDQP---S--------------------------KQPFLQRND  136 (204)
Q Consensus        87 ~~~~~~~~~~~~t~l~~a~~-~~~~~~~~~L~~~~~~~~~~---~--------------------------~~~~~~~~~  136 (204)
                      + +++.++..+.+|+++|.. .++.+++++|++.|++....   +                          -..+..+..
T Consensus        96 A-dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (631)
T PHA02792         96 L-EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRM  174 (631)
T ss_pred             C-CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCC
Confidence            8 899998888999999965 69999999999999874321   0                          113567788


Q ss_pred             CccHHHHHHHhC-------CHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC----cchhhhh
Q 037875          137 QSTVLHMAVISQ-------HFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP----EAFKLKQ  189 (204)
Q Consensus       137 g~t~l~~a~~~~-------~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~----~~~~~~~  189 (204)
                      |.||||+++..+       ..++++.|++ +|++++.+|..|.||||+|+.+.    ++++.+.
T Consensus       175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~-~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~  237 (631)
T PHA02792        175 GKTVLYYYIITRSQDGYATSLDVINYLIS-HEKEMRYYTYREHTTLYYYVDKCDIKREIFDALF  237 (631)
T ss_pred             CCchHHHHHhhCCcccccCCHHHHHHHHh-CCCCcCccCCCCChHHHHHHHcccchHHHHHHHH
Confidence            999999999999       8999999999 69999999999999999998554    5555543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.79  E-value=2.9e-18  Score=137.82  Aligned_cols=146  Identities=12%  Similarity=0.049  Sum_probs=121.1

Q ss_pred             HHHHHHHHhhhccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCC--CcHHHHHHhcCCCH---HH
Q 037875            4 KVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAG--NTVLHATATSSRAL---PV   78 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g--~~~l~~a~~~~~~~---~~   78 (204)
                      ..+++++.|+++|++........+++.|+..|+.+++++|++.|++     ++.++..|  .||||.|+.... .   ++
T Consensus       319 v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-----IN~kD~~g~~~TpLh~A~~n~~-~~v~~I  392 (631)
T PHA02792        319 VYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV-----VVEDDDNIINIMPLFPTLSIHE-SDVLSI  392 (631)
T ss_pred             ccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc-----hhhhcCCCCChhHHHHHHHhcc-HhHHHH
Confidence            3678999999999987655567789999999999999999997776     77777664  699998776654 3   35


Q ss_pred             HHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHH---hC-------
Q 037875           79 ADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVI---SQ-------  148 (204)
Q Consensus        79 ~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~---~~-------  148 (204)
                      +++|+++|+ +++.++..|.||||+|+..++.+++++|+++|++++.       ++..|.||+++|+.   .+       
T Consensus       393 lklLIs~GA-DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~-------kD~~G~TpL~~A~~~~~~~~~~i~~~  464 (631)
T PHA02792        393 LKLCKPYID-DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI-------TTKYGSTCIGICVILAHACIPEIAEL  464 (631)
T ss_pred             HHHHHhcCC-ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC-------cCCCCCCHHHHHHHHHhcccHHHHHH
Confidence            788899998 8999999999999999999999999999999999887       58999999999975   22       


Q ss_pred             CHHHHHHHHHHhchhh
Q 037875          149 HFELALEIAKEYKYLI  164 (204)
Q Consensus       149 ~~~~~~~Ll~~~g~~~  164 (204)
                      ..++++.|++ .|.++
T Consensus       465 ~~~il~lLLs-~~p~i  479 (631)
T PHA02792        465 YIKILEIILS-KLPTI  479 (631)
T ss_pred             HHHHHHHHHh-cCCCh
Confidence            2455666776 46554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=3e-18  Score=106.76  Aligned_cols=86  Identities=29%  Similarity=0.395  Sum_probs=38.8

Q ss_pred             HHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHc
Q 037875           28 LHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARY  107 (204)
Q Consensus        28 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  107 (204)
                      ||+|+..|+.+++++|++.+.+     ++.    |.||||+|+..++ .+++++|++.+. +++.++..|.||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-----~~~----~~~~l~~A~~~~~-~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-----INL----GNTALHYAAENGN-LEIVKLLLENGA-DINSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-----TTS----SSBHHHHHHHTTT-HHHHHHHHHTTT-CTT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-----CCC----CCCHHHHHHHcCC-HHHHHHHHHhcc-cccccCCCCCCHHHHHHHc
Confidence            3445555555555555553332     221    4445555444444 444444444444 4444444444444444444


Q ss_pred             CCHHHHHHHHhcccCCC
Q 037875          108 GKADIFNFLAGKIADYD  124 (204)
Q Consensus       108 ~~~~~~~~L~~~~~~~~  124 (204)
                      |+.+++++|+++|++++
T Consensus        70 ~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             THHHHHHHHHHTTT-TT
T ss_pred             CCHHHHHHHHHcCCCCC
Confidence            44444444444444433

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=1.2e-18  Score=116.42  Aligned_cols=111  Identities=24%  Similarity=0.247  Sum_probs=100.9

Q ss_pred             cHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHH
Q 037875           64 TVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHM  143 (204)
Q Consensus        64 ~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~  143 (204)
                      ..+.+|+..+. ...|+.|++..+..++.+|.+++||||.|+.+|+.++++.|+..|++.+.       +...|+||||.
T Consensus        65 rl~lwaae~nr-l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a-------~T~~GWTPLhS  136 (228)
T KOG0512|consen   65 RLLLWAAEKNR-LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA-------KTNEGWTPLHS  136 (228)
T ss_pred             HHHHHHHhhcc-HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc-------ccccCccchhh
Confidence            34677888888 88899999888878999999999999999999999999999999999887       57899999999


Q ss_pred             HHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCc
Q 037875          144 AVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPE  183 (204)
Q Consensus       144 a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~  183 (204)
                      ||...+.+++..||. +|+|++.......||||+++.+..
T Consensus       137 AckWnN~~va~~LLq-hgaDVnA~t~g~ltpLhlaa~~rn  175 (228)
T KOG0512|consen  137 ACKWNNFEVAGRLLQ-HGADVNAQTKGLLTPLHLAAGNRN  175 (228)
T ss_pred             hhcccchhHHHHHHh-ccCcccccccccchhhHHhhcccc
Confidence            999999999999999 699999999999999999986543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=1.1e-17  Score=110.30  Aligned_cols=124  Identities=27%  Similarity=0.369  Sum_probs=111.5

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCc
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGET   99 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t   99 (204)
                      .+..|.||||+|+..++.+++++|++.+.+     .+..+..|.+|+|.|+..++ .+++++|+..+. .++..+..+.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-----~~~~~~~g~~~l~~a~~~~~-~~~~~~ll~~~~-~~~~~~~~~~~   75 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-----VNAKDNDGRTPLHLAAKNGH-LEIVKLLLEKGA-DVNARDKDGNT   75 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHcCC-HHHHHHHHHcCC-CccccCCCCCC
Confidence            457799999999999999999999997765     57888999999999999999 899999999987 77788889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHH
Q 037875          100 ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIA  157 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  157 (204)
                      |+|.|+..++.+++++|+..+.+.+.       .+..+.||++.|...++.+++++|+
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGADVNA-------RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCcc-------cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999876665       4788999999999999999988764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=4.3e-18  Score=106.05  Aligned_cols=81  Identities=28%  Similarity=0.397  Sum_probs=67.7

Q ss_pred             HHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHH
Q 037875           66 LHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV  145 (204)
Q Consensus        66 l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  145 (204)
                      ||+|+..++ .+++++|++.+. +++.    |.||+|+|+..|+.+++++|++.|++++.       ++..|+||||+|+
T Consensus         1 L~~A~~~~~-~~~~~~ll~~~~-~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~L~~A~   67 (89)
T PF12796_consen    1 LHIAAQNGN-LEILKFLLEKGA-DINL----GNTALHYAAENGNLEIVKLLLENGADINS-------QDKNGNTALHYAA   67 (89)
T ss_dssp             HHHHHHTTT-HHHHHHHHHTTS-TTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--------BSTTSSBHHHHHH
T ss_pred             CHHHHHcCC-HHHHHHHHHCcC-CCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccc-------cCCCCCCHHHHHH
Confidence            688888888 889999988775 4544    77899999999999999999998888776       5788999999999


Q ss_pred             HhCCHHHHHHHHHH
Q 037875          146 ISQHFELALEIAKE  159 (204)
Q Consensus       146 ~~~~~~~~~~Ll~~  159 (204)
                      ..|+.+++++|++.
T Consensus        68 ~~~~~~~~~~Ll~~   81 (89)
T PF12796_consen   68 ENGNLEIVKLLLEH   81 (89)
T ss_dssp             HTTHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHc
Confidence            99999999988875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=1.8e-18  Score=133.39  Aligned_cols=160  Identities=24%  Similarity=0.211  Sum_probs=137.3

Q ss_pred             HHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHH
Q 037875           27 VLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSAR  106 (204)
Q Consensus        27 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  106 (204)
                      .+.-||..+..+-+..|+..|+.     ++..+.+|.|++|.+|.-.+ .++|++|+++++ +++..+..++||+|-|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~-----~~~~n~DglTalhq~~id~~-~e~v~~l~e~ga-~Vn~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS-----PNLCNVDGLTALHQACIDDN-LEMVKFLVENGA-NVNAQDNEGWTPLHAAAS  115 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC-----ccccCCccchhHHHHHhccc-HHHHHHHHHhcC-CccccccccCCcchhhcc
Confidence            35678889999999999997765     78999999999999999999 899999999998 999999999999999999


Q ss_pred             cCCHHHHHHHHhcccCCCCC----------------------------------------------------CCCccccC
Q 037875          107 YGKADIFNFLAGKIADYDQP----------------------------------------------------SKQPFLQR  134 (204)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~----------------------------------------------------~~~~~~~~  134 (204)
                      .|+..++.+|+.+|+++..-                                                    +...+.+.
T Consensus       116 cg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~  195 (527)
T KOG0505|consen  116 CGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH  195 (527)
T ss_pred             cccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence            99999999999998873211                                                    11135566


Q ss_pred             CCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccch
Q 037875          135 NDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFF  194 (204)
Q Consensus       135 ~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~  194 (204)
                      ..|.|.||+|+..|+.+++.+|+. .|.+++.+|.+|.||||.|+..  .++.+++.+.|..
T Consensus       196 ~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~  256 (527)
T KOG0505|consen  196 ARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD  256 (527)
T ss_pred             cccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc
Confidence            679999999999999999999999 6999999999999999999743  4555666666543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=5.8e-18  Score=136.32  Aligned_cols=161  Identities=27%  Similarity=0.263  Sum_probs=134.4

Q ss_pred             ccCCchHHHHHHhc---CChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccccc---
Q 037875           21 TVHDDTVLHMATYF---KRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRN---   94 (204)
Q Consensus        21 ~~~~~~~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~---   94 (204)
                      ...|.|.||.|..+   ++.++++.|++.-+..-........+.|.||||+|+.+.+ .++|++|+..|+ +++.+.   
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~-~~~V~lLl~~gA-DV~aRa~G~  217 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRD-AELVRLLLAAGA-DVHARACGA  217 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhcc-HHHHHHHHHcCC-chhhHhhcc
Confidence            34699999999984   4558999999876543222233446789999999999999 899999999998 665431   


Q ss_pred             --------------------CCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHH
Q 037875           95 --------------------NNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELAL  154 (204)
Q Consensus        95 --------------------~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  154 (204)
                                          ..|..||..|+.-++.+++++|+++|+|++.       +|..|+|.||..+.+-..++..
T Consensus       218 FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a-------qDS~GNTVLH~lVi~~~~~My~  290 (782)
T KOG3676|consen  218 FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA-------QDSNGNTVLHMLVIHFVTEMYD  290 (782)
T ss_pred             ccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc-------cccCCChHHHHHHHHHHHHHHH
Confidence                                1377899999999999999999999999887       7999999999999998899999


Q ss_pred             HHHHHhchh--hcccCCCCCCHhHHhc--cCCcchhhhhhc
Q 037875          155 EIAKEYKYL--IGEKDMDGMTALQLLS--CKPEAFKLKQER  191 (204)
Q Consensus       155 ~Ll~~~g~~--~~~~~~~g~t~l~~a~--~~~~~~~~~~~~  191 (204)
                      .+|+ .|++  ...+|.+|-|||.+|+  .+.+++...+++
T Consensus       291 ~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  291 LALE-LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHh-cCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999 6999  8999999999999998  455777766665

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=2.1e-17  Score=122.17  Aligned_cols=141  Identities=21%  Similarity=0.266  Sum_probs=122.3

Q ss_pred             HHHHHHHhhhccc---cccccCCchHHHHHHhc-----CChHHHHHHHhhCchhhhhhhccccc-CCCcHHHHHHhcCCC
Q 037875            5 VIEVCRKISDHAL---HVLTVHDDTVLHMATYF-----KRDDLALKLLDEIPELYIHKMTRQNK-AGNTVLHATATSSRA   75 (204)
Q Consensus         5 ~~~~~~~l~~~~~---~~~~~~~~~~L~~A~~~-----~~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~~~l~~a~~~~~~   75 (204)
                      -.++++.|++.|.   +-++..|+||+++++..     .+.++|..|.+.|-      +|.+.. .|+|+|++|+..|+ 
T Consensus       280 NF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn------VNaKAsQ~gQTALMLAVSHGr-  352 (452)
T KOG0514|consen  280 NFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD------VNAKASQHGQTALMLAVSHGR-  352 (452)
T ss_pred             chHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC------cchhhhhhcchhhhhhhhcCc-
Confidence            3678899999873   56788899999998875     36688999998762      666654 79999999999999 


Q ss_pred             HHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHH
Q 037875           76 LPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALE  155 (204)
Q Consensus        76 ~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  155 (204)
                      .++|+.|+..++ ++|.+|.+|.|+|+.|+.+||.+++++|+..      +.++....|.+|.|+|.+|...|+.++...
T Consensus       353 ~d~vk~LLacgA-dVNiQDdDGSTALMCA~EHGhkEivklLLA~------p~cd~sLtD~DgSTAl~IAleagh~eIa~m  425 (452)
T KOG0514|consen  353 VDMVKALLACGA-DVNIQDDDGSTALMCAAEHGHKEIVKLLLAV------PSCDISLTDVDGSTALSIALEAGHREIAVM  425 (452)
T ss_pred             HHHHHHHHHccC-CCccccCCccHHHhhhhhhChHHHHHHHhcc------CcccceeecCCCchhhhhHHhcCchHHHHH
Confidence            999999999998 9999999999999999999999999999975      444455589999999999999999999988


Q ss_pred             HHHH
Q 037875          156 IAKE  159 (204)
Q Consensus       156 Ll~~  159 (204)
                      |..+
T Consensus       426 lYa~  429 (452)
T KOG0514|consen  426 LYAH  429 (452)
T ss_pred             HHHH
Confidence            8775

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.75  E-value=3.9e-18  Score=136.19  Aligned_cols=167  Identities=24%  Similarity=0.197  Sum_probs=96.8

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcH
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETA  100 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  100 (204)
                      |..|.|.||.|+.+|+.++++.|++.-     +.++..+..|.+|||+|+..|+ .+++++++..+. .++..+..|.+|
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~e-----a~ldl~d~kg~~plhlaaw~g~-~e~vkmll~q~d-~~na~~~e~~tp  118 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYE-----ALLDLCDTKGILPLHLAAWNGN-LEIVKMLLLQTD-ILNAVNIENETP  118 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcch-----hhhhhhhccCcceEEehhhcCc-chHHHHHHhccc-CCCcccccCcCc
Confidence            445666666666666666666666532     2244455555666666666665 566665555553 555555555666


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCC-------------------------------C---CCccccCCCCccHHHHHHH
Q 037875          101 LFRSARYGKADIFNFLAGKIADYDQP-------------------------------S---KQPFLQRNDQSTVLHMAVI  146 (204)
Q Consensus       101 l~~a~~~~~~~~~~~L~~~~~~~~~~-------------------------------~---~~~~~~~~~g~t~l~~a~~  146 (204)
                      ||.|+++|+.+++.+|+.++++.-..                               .   .....++.-+.+|+|.|++
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaak  198 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAK  198 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhh
Confidence            66666666666666666555542210                               0   0011233445667777777


Q ss_pred             hCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc--cCCcchhhhhhccchhh
Q 037875          147 SQHFELALEIAKEYKYLIGEKDMDGMTALQLLS--CKPEAFKLKQERGFFKK  196 (204)
Q Consensus       147 ~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~~  196 (204)
                      +|+.++++.|++ .|.++|....+ .|+||.|+  .+.++...+++.|.-.+
T Consensus       199 ngh~~~~~~ll~-ag~din~~t~~-gtalheaalcgk~evvr~ll~~gin~h  248 (854)
T KOG0507|consen  199 NGHVECMQALLE-AGFDINYTTED-GTALHEAALCGKAEVVRFLLEIGINTH  248 (854)
T ss_pred             cchHHHHHHHHh-cCCCccccccc-chhhhhHhhcCcchhhhHHHhhccccc
Confidence            777777777777 57777776544 46777664  55667677766665443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.74  E-value=1e-17  Score=133.87  Aligned_cols=169  Identities=23%  Similarity=0.219  Sum_probs=129.7

Q ss_pred             HHHHHHhhhcc--ccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHA--LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~--~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      .+++..|+++.  +++.+..|..|||+|+-.|+.+++|.++.++.     .+|....+|.+|||.|+..++ .+++.+|+
T Consensus        62 ~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d-----~~na~~~e~~tplhlaaqhgh-~dvv~~Ll  135 (854)
T KOG0507|consen   62 NQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTD-----ILNAVNIENETPLHLAAQHGH-LEVVFYLL  135 (854)
T ss_pred             hHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhccc-----CCCcccccCcCccchhhhhcc-hHHHHHHH
Confidence            45666666665  45667788888888888888888888888662     377888888888888888888 78888888


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccC---------C-------------------------CCCCCC
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIAD---------Y-------------------------DQPSKQ  129 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~---------~-------------------------~~~~~~  129 (204)
                      .+++ ++-..+.++.|++..|++.|..++++.|+.....         .                         -..+.+
T Consensus       136 ~~~a-dp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d  214 (854)
T KOG0507|consen  136 KKNA-DPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD  214 (854)
T ss_pred             hcCC-CccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC
Confidence            8887 6777788888888888888888888877754111         0                         011222


Q ss_pred             ccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCc
Q 037875          130 PFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPE  183 (204)
Q Consensus       130 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~  183 (204)
                      .|.... .-|.||.|+..|..+++..||+ .|.....++..|+|+|.+...-.+
T Consensus       215 in~~t~-~gtalheaalcgk~evvr~ll~-~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  215 INYTTE-DGTALHEAALCGKAEVVRFLLE-IGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             cccccc-cchhhhhHhhcCcchhhhHHHh-hccccccccccchHHHHHHHhcch
Confidence            344333 4589999999999999999999 699999999999999999875543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=3.1e-16  Score=103.28  Aligned_cols=114  Identities=28%  Similarity=0.408  Sum_probs=103.3

Q ss_pred             cccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCC
Q 037875           58 QNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ  137 (204)
Q Consensus        58 ~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g  137 (204)
                      .+..|.||||.|+..++ .+++++|+..+. ..+..+..|.+|+|.|+..+..+++++|+..+..++.       .+..+
T Consensus         3 ~~~~g~t~l~~a~~~~~-~~~i~~li~~~~-~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~-------~~~~~   73 (126)
T cd00204           3 RDEDGRTPLHLAASNGH-LEVVKLLLENGA-DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-------RDKDG   73 (126)
T ss_pred             cCcCCCCHHHHHHHcCc-HHHHHHHHHcCC-CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-------cCCCC
Confidence            45789999999999999 899999999987 5677888999999999999999999999999876655       57889


Q ss_pred             ccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC
Q 037875          138 STVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK  181 (204)
Q Consensus       138 ~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~  181 (204)
                      .||+|+|+..++.+++++|+. .+.+++..+..|.||+++|...
T Consensus        74 ~~~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          74 NTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhc
Confidence            999999999999999999999 5899999999999999999755

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=2.6e-15  Score=90.16  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=87.3

Q ss_pred             cHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHH
Q 037875           64 TVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHM  143 (204)
Q Consensus        64 ~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~  143 (204)
                      .-+.|+..+|. .+-|+..+..+- +++..- .|++|+|+|+.+|+.+++++|+..|++++.       .|..|.|||..
T Consensus         4 ~~~~W~vkNG~-~DeVk~~v~~g~-nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~-------kDKygITPLLs   73 (117)
T KOG4214|consen    4 MSVAWNVKNGE-IDEVKQSVNEGL-NVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQD-------KDKYGITPLLS   73 (117)
T ss_pred             hhHhhhhccCc-HHHHHHHHHccc-cHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCC-------ccccCCcHHHH
Confidence            34568888888 788888888774 666544 788999999999999999999999999988       48899999999


Q ss_pred             HHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHH
Q 037875          144 AVISQHFELALEIAKEYKYLIGEKDMDGMTALQL  177 (204)
Q Consensus       144 a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~  177 (204)
                      |++.|+.+|+++||. .|++.+.+..+|.+.+..
T Consensus        74 AvwEGH~~cVklLL~-~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   74 AVWEGHRDCVKLLLQ-NGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHhhHHHHHHHHH-cCcccceeCCCchhHHhh
Confidence            999999999999988 699999988888777643

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.61  E-value=2.5e-14  Score=103.68  Aligned_cols=128  Identities=25%  Similarity=0.297  Sum_probs=115.8

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCC----HHHHHHHHhhCC--Cccccc
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRA----LPVADKLLRKAP--GLLGMR   93 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~----~~~~~~Ll~~~~--~~~~~~   93 (204)
                      .+..+.++++.++..+....+++++..|.+     ++.++..|.||+|+|+..++.    .+++++|+..++  ...+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGAD-----VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCC-----cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            344588999999999999999999997776     789999999999999999973    599999999998  577778


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHH
Q 037875           94 NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE  159 (204)
Q Consensus        94 ~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  159 (204)
                      +..|.||+|+|+..|+.++++.|++.|++++.       ++..|.|+++.|+..+..++++.++..
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~-------~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPNS-------RNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCcc-------cccCCCcchhhhcccchHHHHHHHHhc
Confidence            99999999999999999999999999998776       588999999999999999999888884

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.58  E-value=6.1e-15  Score=122.64  Aligned_cols=163  Identities=17%  Similarity=0.118  Sum_probs=123.2

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..++++.++.+|.++  .++.|.+||.+|+..||...|+.|++..++.    --..|+.+.|+|.+||..|. .++|++|
T Consensus       769 h~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~v----eaQsdrtkdt~lSlacsggr-~~vvelL  843 (2131)
T KOG4369|consen  769 HREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV----EAQSDRTKDTMLSLACSGGR-TRVVELL  843 (2131)
T ss_pred             cHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhh----hhhcccccCceEEEecCCCc-chHHHHH
Confidence            467889999999887  4888999999999999999999999965542    23457788999999999888 8999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      +..++ +-..++...+||+.+|...|..++++.|+..|..++...     -...|..||+.|...|+-..++.||+ .|.
T Consensus       844 l~~ga-nkehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt-----gSklgisPLmlatmngh~~at~~ll~-~gs  916 (2131)
T KOG4369|consen  844 LNAGA-NKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT-----GSKLGISPLMLATMNGHQAATLSLLQ-PGS  916 (2131)
T ss_pred             HHhhc-cccccchhhcCchhhhcCcchHHHHHHHhhccccccccc-----ccccCcchhhhhhhccccHHHHHHhc-ccc
Confidence            99887 666677788899999998899999999999988777532     13456666666666666666666655 366


Q ss_pred             hhcccC-CCCCCHhHHhc
Q 037875          163 LIGEKD-MDGMTALQLLS  179 (204)
Q Consensus       163 ~~~~~~-~~g~t~l~~a~  179 (204)
                      |+|..- ...+|+|.+|+
T Consensus       917 diNaqIeTNrnTaltla~  934 (2131)
T KOG4369|consen  917 DINAQIETNRNTALTLAL  934 (2131)
T ss_pred             hhccccccccccceeecc
Confidence            665432 33345555554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=6e-14  Score=116.46  Aligned_cols=105  Identities=20%  Similarity=0.090  Sum_probs=89.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHH
Q 037875           65 VLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMA  144 (204)
Q Consensus        65 ~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a  144 (204)
                      .|+.|+..|+ .+.+++|+..++ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|
T Consensus        85 ~L~~aa~~G~-~~~vk~LL~~Ga-din~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~-------~d~~G~TpLh~A  155 (664)
T PTZ00322         85 ELCQLAASGD-AVGARILLTGGA-DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-------LDKDGKTPLELA  155 (664)
T ss_pred             HHHHHHHcCC-HHHHHHHHHCCC-CCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-------CCCCCCCHHHHH
Confidence            4778888888 888999998887 7888888999999999999999999999999888776       588899999999


Q ss_pred             HHhCCHHHHHHHHHHh-------chhhcccCCCCCCHhHHhc
Q 037875          145 VISQHFELALEIAKEY-------KYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       145 ~~~~~~~~~~~Ll~~~-------g~~~~~~~~~g~t~l~~a~  179 (204)
                      +..|+.++++.|+. +       |++.+..+..|.+|+....
T Consensus       156 ~~~g~~~iv~~Ll~-~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        156 EENGFREVVQLLSR-HSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHCCcHHHHHHHHh-CCCcccccCCCCCccccCCCCccchhh
Confidence            99999999988887 5       7888888888887766553

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=1.5e-14  Score=81.65  Aligned_cols=45  Identities=29%  Similarity=0.200  Sum_probs=28.9

Q ss_pred             cCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHh
Q 037875          133 QRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLL  178 (204)
Q Consensus       133 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a  178 (204)
                      +|..|.||||+|+..|+.+++++|+. .|++++.+|.+|+||+++|
T Consensus        12 ~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   12 QDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            68889999999999999999999995 7999999999999999886

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=7.9e-13  Score=95.78  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=109.1

Q ss_pred             cccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC-----HHHHHHHHhccc--CCCCCCC
Q 037875           56 TRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGK-----ADIFNFLAGKIA--DYDQPSK  128 (204)
Q Consensus        56 ~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~L~~~~~--~~~~~~~  128 (204)
                      ...+..+.++++.++..+. .+++++++..+. +++..+..|.||+|+|+..++     .++++.|++.|+  +...   
T Consensus        67 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~---  141 (235)
T COG0666          67 AARDLDGRLPLHSAASKGD-DKIVKLLLASGA-DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN---  141 (235)
T ss_pred             ccCCccccCHHHHHHHcCc-HHHHHHHHHcCC-CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc---
Confidence            3455568899999999998 788899999998 679999999999999999999     999999999999  3332   


Q ss_pred             CccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC--cchhhhhhc
Q 037875          129 QPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP--EAFKLKQER  191 (204)
Q Consensus       129 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~~~  191 (204)
                         .++..|.||+|+|+..|+.+++..|+. .|++++.++..|.|+++.++...  .+.+.+...
T Consensus       142 ---~~~~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         142 ---LRDEDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             ---ccCCCCCchhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence               158999999999999999999999999 69999999999999999998554  444444443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=1.5e-13  Score=114.12  Aligned_cols=86  Identities=19%  Similarity=0.152  Sum_probs=81.5

Q ss_pred             HHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHH
Q 037875           27 VLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSAR  106 (204)
Q Consensus        27 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  106 (204)
                      .|+.|+..|+.+.++.|++.|++     ++.+|..|.||||+|+..++ .+++++|+..|+ +++..+..|.||||+|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad-----in~~d~~G~TpLh~Aa~~g~-~eiv~~LL~~Ga-dvn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD-----PNCRDYDGRTPLHIACANGH-VQVVRVLLEFGA-DPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCcHHHHHHHCCC-HHHHHHHHHCCC-CCCCCCCCCCCHHHHHHH
Confidence            48889999999999999997766     88999999999999999999 999999999998 899999999999999999


Q ss_pred             cCCHHHHHHHHhc
Q 037875          107 YGKADIFNFLAGK  119 (204)
Q Consensus       107 ~~~~~~~~~L~~~  119 (204)
                      .|+.+++++|+++
T Consensus       158 ~g~~~iv~~Ll~~  170 (664)
T PTZ00322        158 NGFREVVQLLSRH  170 (664)
T ss_pred             CCcHHHHHHHHhC
Confidence            9999999999998

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=7.3e-14  Score=78.32  Aligned_cols=54  Identities=26%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      |.||||+|+..|+.+++++|++.|.+     ++.+|.+|.||||+|+..|+ .+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-----in~~d~~g~t~lh~A~~~g~-~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-----INAQDEDGRTPLHYAAKNGN-IDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-----TT-B-TTS--HHHHHHHTT--HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHccC-HHHHHHHC
Confidence            45677777777777777777775544     66666777777777777776 67776664

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=1e-13  Score=77.70  Aligned_cols=54  Identities=30%  Similarity=0.382  Sum_probs=31.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHH
Q 037875           97 GETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIA  157 (204)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  157 (204)
                      |+||+|+|++.|+.+++++|++.|.+++.       +|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~-------~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA-------QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666666554       4666667777777777666666654

...

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.50  E-value=4.7e-13  Score=80.49  Aligned_cols=92  Identities=18%  Similarity=0.154  Sum_probs=78.6

Q ss_pred             hHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 037875           26 TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSA  105 (204)
Q Consensus        26 ~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  105 (204)
                      .-+.++..+|..+-|+..+..|.+     +|.. ..|.+|||+|+-.|+ .+++++|+..|+ +++.+|+.|.|||.-|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n-----Vn~~-~ggR~plhyAAD~GQ-l~ilefli~iGA-~i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN-----VNEI-YGGRTPLHYAADYGQ-LSILEFLISIGA-NIQDKDKYGITPLLSAV   75 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc-----HHHH-hCCcccchHhhhcch-HHHHHHHHHhcc-ccCCccccCCcHHHHHH
Confidence            346788889999999988887654     4433 388999999999998 899999999998 89999999999999999


Q ss_pred             HcCCHHHHHHHHhcccCCCC
Q 037875          106 RYGKADIFNFLAGKIADYDQ  125 (204)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~  125 (204)
                      ..||.+++++|+..|++...
T Consensus        76 wEGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             HHhhHHHHHHHHHcCcccce
Confidence            99999999999999998655

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.49  E-value=2.8e-14  Score=118.78  Aligned_cols=146  Identities=16%  Similarity=0.141  Sum_probs=130.5

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccc-ccCCCCcHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGM-RNNNGETAL  101 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~t~l  101 (204)
                      +-.|+|-.||..|+.+.++.|+.+|+.     +.-+|..|.+||.+|+..|| ..+|+.|+.+.+ +++. .++.+.|+|
T Consensus       756 n~~t~LT~acaggh~e~vellv~rgan-----iehrdkkgf~plImaatagh-~tvV~~llk~ha-~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGAN-----IEHRDKKGFVPLIMAATAGH-ITVVQDLLKAHA-DVEAQSDRTKDTML  828 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhccc-----ccccccccchhhhhhcccCc-hHHHHHHHhhhh-hhhhhcccccCceE
Confidence            457899999999999999999998876     88899999999999999999 899999998887 5555 588899999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhccc--CCCCCCHhHHhc
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEK--DMDGMTALQLLS  179 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~--~~~g~t~l~~a~  179 (204)
                      .+||..|..+++++|+..|++-..       |+-...|||..|...|+.+++..||. .|++++.+  .+.|..||.+|.
T Consensus       829 Slacsggr~~vvelLl~~gankeh-------rnvsDytPlsla~Sggy~~iI~~llS-~GseInSrtgSklgisPLmlat  900 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKEH-------RNVSDYTPLSLARSGGYTKIIHALLS-SGSEINSRTGSKLGISPLMLAT  900 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccccc-------cchhhcCchhhhcCcchHHHHHHHhh-cccccccccccccCcchhhhhh
Confidence            999999999999999999997655       57788999999999999999999999 69888875  478999999998


Q ss_pred             cCCc
Q 037875          180 CKPE  183 (204)
Q Consensus       180 ~~~~  183 (204)
                      .++.
T Consensus       901 mngh  904 (2131)
T KOG4369|consen  901 MNGH  904 (2131)
T ss_pred             hccc
Confidence            7764

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=2.3e-12  Score=93.15  Aligned_cols=119  Identities=21%  Similarity=0.192  Sum_probs=104.7

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccc-ccCCCCcHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGM-RNNNGETAL  101 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~t~l  101 (204)
                      .-..||.-++-.+..+-+..|++-     --.+|..|.+|.++|..|+..|+ .+++++|+..|+ ++|. ++..++|||
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~-----vr~vn~~D~sGMs~LahAaykGn-l~~v~lll~~ga-DvN~~qhg~~YTpL   83 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST-----VRQVNQRDPSGMSVLAHAAYKGN-LTLVELLLELGA-DVNDKQHGTLYTPL   83 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH-----hhhhhccCCCcccHHHHHHhcCc-HHHHHHHHHhCC-CcCcccccccccHH
Confidence            457889999999999999999983     22388999999999999999999 899999999998 6665 577899999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHH
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALE  155 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  155 (204)
                      +.|+.+|+.++..+|++.|+....       .|.-|+|+-..|+.-|+.+++..
T Consensus        84 mFAALSGn~dvcrllldaGa~~~~-------vNsvgrTAaqmAAFVG~H~CV~i  130 (396)
T KOG1710|consen   84 MFAALSGNQDVCRLLLDAGARMYL-------VNSVGRTAAQMAAFVGHHECVAI  130 (396)
T ss_pred             HHHHHcCCchHHHHHHhccCcccc-------ccchhhhHHHHHHHhcchHHHHH
Confidence            999999999999999999998665       68889999999999999998853

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.44  E-value=2e-13  Score=77.00  Aligned_cols=49  Identities=31%  Similarity=0.468  Sum_probs=16.9

Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHH
Q 037875           89 LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMA  144 (204)
Q Consensus        89 ~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a  144 (204)
                      +++.++..|.||||+|+.+|+.+++++|+..|++++.       +|..|+||+|+|
T Consensus         8 ~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~-------~d~~G~Tpl~~A   56 (56)
T PF13857_consen    8 DVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA-------KDKDGQTPLHYA   56 (56)
T ss_dssp             -TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----------TTS--HHHH-
T ss_pred             CCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC-------CcCCCCCHHHhC
Confidence            4444444555555555555555555555544444443       344555555443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=3.2e-12  Score=99.24  Aligned_cols=121  Identities=16%  Similarity=0.104  Sum_probs=99.3

Q ss_pred             chHH---HHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHH
Q 037875           25 DTVL---HMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETAL  101 (204)
Q Consensus        25 ~~~L---~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  101 (204)
                      .+||   .=|+..|.+++|+..+..-.|     +...+..|-|+||-|+..|| .++|++|+..|+ ++|..|++|+|||
T Consensus       548 fnPLaLLLDaaLeGEldlVq~~i~ev~D-----pSqpNdEGITaLHNAiCagh-yeIVkFLi~~ga-nVNa~DSdGWTPL  620 (752)
T KOG0515|consen  548 FNPLALLLDAALEGELDLVQRIIYEVTD-----PSQPNDEGITALHNAICAGH-YEIVKFLIEFGA-NVNAADSDGWTPL  620 (752)
T ss_pred             cchHHHHHhhhhcchHHHHHHHHHhhcC-----CCCCCccchhHHhhhhhcch-hHHHHHHHhcCC-cccCccCCCCchh
Confidence            4554   448889999999999985544     66778899999999999999 899999999998 9999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHH--HHhCCHHHHHHHHH
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMA--VISQHFELALEIAK  158 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~  158 (204)
                      |.|+..++..+++.|++.|+.+-..      .-.++.|+.--+  ...|+.+|.++|..
T Consensus       621 HCAASCNnv~~ckqLVe~GaavfAs------TlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  621 HCAASCNNVPMCKQLVESGAAVFAS------TLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhhhcCchHHHHHHHhccceEEee------ecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999999876653      234566766543  34678888888765

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=6.2e-12  Score=97.71  Aligned_cols=101  Identities=20%  Similarity=0.179  Sum_probs=87.1

Q ss_pred             HHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhC
Q 037875           69 TATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQ  148 (204)
Q Consensus        69 a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~  148 (204)
                      |+..|- .++|+..+..-. ++...+..|.|+||-|++.||.+++++|++.|+++|.       .|.+||||||.|+..+
T Consensus       557 aaLeGE-ldlVq~~i~ev~-DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa-------~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  557 AALEGE-LDLVQRIIYEVT-DPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA-------ADSDGWTPLHCAASCN  627 (752)
T ss_pred             hhhcch-HHHHHHHHHhhc-CCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC-------ccCCCCchhhhhhhcC
Confidence            666676 899988887665 8888899999999999999999999999999999998       5899999999999999


Q ss_pred             CHHHHHHHHHHhchhhcc-cCCCCCCHhHHhc
Q 037875          149 HFELALEIAKEYKYLIGE-KDMDGMTALQLLS  179 (204)
Q Consensus       149 ~~~~~~~Ll~~~g~~~~~-~~~~g~t~l~~a~  179 (204)
                      +..+++.|++. |+-+-. .-.++.|+..-+.
T Consensus       628 nv~~ckqLVe~-GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  628 NVPMCKQLVES-GAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             chHHHHHHHhc-cceEEeeecccccchhhhcc
Confidence            99999999995 665544 4477888877664

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1.8e-11  Score=88.61  Aligned_cols=108  Identities=19%  Similarity=0.143  Sum_probs=96.4

Q ss_pred             CcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHH
Q 037875           63 NTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLH  142 (204)
Q Consensus        63 ~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~  142 (204)
                      ..||.-++-.++ .+-...|++. ...++..|.+|.++|..|+..|+.+.++.|++.|+|+|..      ++..+.||||
T Consensus        13 ~~~Lle~i~Knd-t~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~------qhg~~YTpLm   84 (396)
T KOG1710|consen   13 KSPLLEAIDKND-TEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK------QHGTLYTPLM   84 (396)
T ss_pred             hhHHHHHHccCc-HHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc------cccccccHHH
Confidence            578888888887 6777777765 3478999999999999999999999999999999999986      5677899999


Q ss_pred             HHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          143 MAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       143 ~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      .|+..|+-++.+.|++ .|+.+...|.-|+|+...|+
T Consensus        85 FAALSGn~dvcrllld-aGa~~~~vNsvgrTAaqmAA  120 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLD-AGARMYLVNSVGRTAAQMAA  120 (396)
T ss_pred             HHHHcCCchHHHHHHh-ccCccccccchhhhHHHHHH
Confidence            9999999999988888 69999999999999999885

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.94  E-value=5.8e-10  Score=91.21  Aligned_cols=85  Identities=24%  Similarity=0.262  Sum_probs=63.2

Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccC
Q 037875           89 LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKD  168 (204)
Q Consensus        89 ~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~  168 (204)
                      -.+.+|..|+|+||+++..+..++++||+.+|+++....      ...|+||||-|+.+|+++++..||. +|..+..+|
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD------~ESG~taLHRaiyyG~idca~lLL~-~g~SL~i~D  116 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQD------EESGYTALHRAIYYGNIDCASLLLS-KGRSLRIKD  116 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecc------ccccchHhhHhhhhchHHHHHHHHh-cCCceEEec
Confidence            345667778888888888888888888888877766521      3567888888888888888866666 688888888


Q ss_pred             CCCCCHhHHhcc
Q 037875          169 MDGMTALQLLSC  180 (204)
Q Consensus       169 ~~g~t~l~~a~~  180 (204)
                      ++|..||+..+.
T Consensus       117 keglsplq~~~r  128 (1267)
T KOG0783|consen  117 KEGLSPLQFLSR  128 (1267)
T ss_pred             ccCCCHHHHHhh
Confidence            888888877754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.94  E-value=5.2e-09  Score=81.15  Aligned_cols=86  Identities=21%  Similarity=0.191  Sum_probs=67.0

Q ss_pred             HHHHHHhcCChHHHHHHHhhCchhhhhhhccccc-CCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 037875           27 VLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK-AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSA  105 (204)
Q Consensus        27 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  105 (204)
                      -||-.++.|+.+..-.|+..|++     .|.... .|.||||.|+..|+ ..-+++|+-+|+ +++..|.+|.||+.+|.
T Consensus       136 QLhasvRt~nlet~LRll~lGA~-----~N~~hpekg~TpLHvAAk~Gq-~~Q~ElL~vYGA-D~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQ-----ANFFHPEKGNTPLHVAAKAGQ-ILQAELLAVYGA-DPGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccc-----cCCCCcccCCchhHHHHhccc-hhhhhHHhhccC-CCCCCCCCCCcHHHHHH
Confidence            36777888888888888887777     555554 68888888888888 677788888887 78888888888888888


Q ss_pred             HcCCHHHHHHHHhc
Q 037875          106 RYGKADIFNFLAGK  119 (204)
Q Consensus       106 ~~~~~~~~~~L~~~  119 (204)
                      ..||.++.+-|++.
T Consensus       209 ~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  209 QGGHHELAERLVEI  222 (669)
T ss_pred             hcCchHHHHHHHHH
Confidence            88887766666554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.92  E-value=1.7e-09  Score=83.29  Aligned_cols=93  Identities=13%  Similarity=0.086  Sum_probs=80.2

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALF  102 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  102 (204)
                      ++...+++|+..|+...++.+.-.|.|     ++.+|++..|+||.|+..|+ .+++++|++....+++.+|+.|+|||.
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D-----~~~~DyD~RTaLHvAAaEG~-v~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMD-----LETKDYDDRTALHVAAAEGH-VEVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhccc-----ccccccccchhheeecccCc-eeHHHHHHHHHcCCCChhhccCCCcch
Confidence            456778899999999999998887766     78889999999999999999 899999998776688888999999999


Q ss_pred             HHHHcCCHHHHHHHHhccc
Q 037875          103 RSARYGKADIFNFLAGKIA  121 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~  121 (204)
                      -|...+|.+++++|-+.-.
T Consensus       579 dA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhHhcCcHHHHHHHHHHhc
Confidence            9999999999998887644

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=4.5e-09  Score=86.21  Aligned_cols=83  Identities=23%  Similarity=0.259  Sum_probs=71.9

Q ss_pred             ccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhccccc-CCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccC
Q 037875           17 LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK-AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNN   95 (204)
Q Consensus        17 ~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~   95 (204)
                      +++.|..|.++||+|+..+..++++||+++|.+     ++.+|. +|.||||.|+..|+ .+++-.|+.+|. -+..+|+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-----v~vqD~ESG~taLHRaiyyG~-idca~lLL~~g~-SL~i~Dk  117 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-----VFVQDEESGYTALHRAIYYGN-IDCASLLLSKGR-SLRIKDK  117 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCce-----eeeccccccchHhhHhhhhch-HHHHHHHHhcCC-ceEEecc
Confidence            567788899999999999999999999996665     777776 79999999999999 899999999987 6888899


Q ss_pred             CCCcHHHHHHH
Q 037875           96 NGETALFRSAR  106 (204)
Q Consensus        96 ~~~t~l~~a~~  106 (204)
                      .|.+||...++
T Consensus       118 eglsplq~~~r  128 (1267)
T KOG0783|consen  118 EGLSPLQFLSR  128 (1267)
T ss_pred             cCCCHHHHHhh
Confidence            99999987776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.83  E-value=1.8e-08  Score=79.55  Aligned_cols=119  Identities=18%  Similarity=0.139  Sum_probs=79.6

Q ss_pred             HHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCC-ccccccCCCCcHHHHHHH
Q 037875           28 LHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPG-LLGMRNNNGETALFRSAR  106 (204)
Q Consensus        28 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~t~l~~a~~  106 (204)
                      +.-|+..+++-.++.....|.+     +..++..-.+.||+|+..|+ .++|+|++++++. .+++.+..|.|.||.|+.
T Consensus       870 il~av~~~D~~klqE~h~~gg~-----ll~~~~~~~sllh~a~~tg~-~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS-----LLIQGPDHCSLLHYAAKTGN-GEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc-----eEeeCcchhhHHHHHHhcCC-hHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            3445555555555555554443     45566666777777777777 6777777777663 344556677777777777


Q ss_pred             cCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHH
Q 037875          107 YGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE  159 (204)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  159 (204)
                      .++..+.++|++.|+.+..       .|..|.||-.-|-+.|+.+.+-+|-.+
T Consensus       944 ~~~r~vc~~lvdagasl~k-------td~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRK-------TDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hcchHHHHHHHhcchhhee-------cccCCCChHHHHHhcCCchHHHHHhhh
Confidence            7777777777777776554       467777777777777777777777765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.81  E-value=2.6e-08  Score=78.69  Aligned_cols=98  Identities=21%  Similarity=0.317  Sum_probs=85.0

Q ss_pred             ccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCC
Q 037875           17 LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNN   96 (204)
Q Consensus        17 ~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~   96 (204)
                      +-+++.+..+.||+|+..|+-++|++++++|+..   .++..+..|.|+||.|+..++ ..+..+|++.|+ .+..+|..
T Consensus       892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e---lld~~de~get~lhkaa~~~~-r~vc~~lvdaga-sl~ktd~k  966 (1004)
T KOG0782|consen  892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE---LLDMADETGETALHKAACQRN-RAVCQLLVDAGA-SLRKTDSK  966 (1004)
T ss_pred             eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH---HHHHHhhhhhHHHHHHHHhcc-hHHHHHHHhcch-hheecccC
Confidence            3467888899999999999999999999988763   356677899999999999998 788999999998 67788999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhc
Q 037875           97 GETALFRSARYGKADIFNFLAGK  119 (204)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~L~~~  119 (204)
                      |.||-..|.+.|+.++..+|-.+
T Consensus       967 g~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  967 GKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             CCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999888654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.79  E-value=1e-08  Score=49.57  Aligned_cols=29  Identities=34%  Similarity=0.499  Sum_probs=21.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcccCCC
Q 037875           96 NGETALFRSARYGKADIFNFLAGKIADYD  124 (204)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~L~~~~~~~~  124 (204)
                      +|+||||+|++.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36777777777777777777777777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.78  E-value=1.3e-08  Score=50.64  Aligned_cols=33  Identities=27%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHHHhchhhcccCC
Q 037875          136 DQSTVLHMAVISQHFELALEIAKEYKYLIGEKDM  169 (204)
Q Consensus       136 ~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~  169 (204)
                      .|+||||+|+..|+.+++++|+. .|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            48999999999999999999999 6999998863

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.77  E-value=1e-08  Score=79.21  Aligned_cols=90  Identities=19%  Similarity=0.150  Sum_probs=73.8

Q ss_pred             cCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhc-ccCCCCCCCCccccCCCCc
Q 037875           60 KAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGK-IADYDQPSKQPFLQRNDQS  138 (204)
Q Consensus        60 ~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~g~  138 (204)
                      .++..++.+|+..|+ ...++.+.-.+. +++.+|.+.+|+||+|+..|+.+++++|++. +.+++       .+|++|+
T Consensus       504 ~~~~i~~~~aa~~GD-~~alrRf~l~g~-D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~-------~kDRw~r  574 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGD-LSALRRFALQGM-DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPD-------PKDRWGR  574 (622)
T ss_pred             ccchhhhhhhhhcCC-HHHHHHHHHhcc-cccccccccchhheeecccCceeHHHHHHHHHcCCCC-------hhhccCC
Confidence            456678899999998 788777766676 8888999999999999999999999999986 33433       3789999


Q ss_pred             cHHHHHHHhCCHHHHHHHHH
Q 037875          139 TVLHMAVISQHFELALEIAK  158 (204)
Q Consensus       139 t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      |||.-|...++.+++++|-+
T Consensus       575 tPlDdA~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  575 TPLDDAKHFKHKEVVKLLEE  594 (622)
T ss_pred             CcchHhHhcCcHHHHHHHHH
Confidence            99999999999999966654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.77  E-value=1e-08  Score=49.62  Aligned_cols=30  Identities=17%  Similarity=0.190  Sum_probs=27.2

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHHHhchhhcc
Q 037875          136 DQSTVLHMAVISQHFELALEIAKEYKYLIGE  166 (204)
Q Consensus       136 ~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~  166 (204)
                      .|+||||+|+..|+.+++++|++ .|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE-HGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCCC
Confidence            38999999999999999999999 5999873

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.76  E-value=6.2e-08  Score=75.31  Aligned_cols=85  Identities=25%  Similarity=0.227  Sum_probs=71.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHhhCCCccccc-cCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHH
Q 037875           65 VLHATATSSRALPVADKLLRKAPGLLGMR-NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHM  143 (204)
Q Consensus        65 ~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~  143 (204)
                      -||..++.++ .+..-.|+.-|+ ++|+. ...|.||||+|+..|+...+++|+-+|+|+..       .|..|+||+.+
T Consensus       136 QLhasvRt~n-let~LRll~lGA-~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a-------~d~~GmtP~~~  206 (669)
T KOG0818|consen  136 QLHSSVRTGN-LETCLRLLSLGA-QANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA-------QDSSGMTPVDY  206 (669)
T ss_pred             HHHHHhhccc-HHHHHHHHHccc-ccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC-------CCCCCCcHHHH
Confidence            3788888888 777666777887 66665 45688999999999999999999999999887       58899999999


Q ss_pred             HHHhCCHHHHHHHHH
Q 037875          144 AVISQHFELALEIAK  158 (204)
Q Consensus       144 a~~~~~~~~~~~Ll~  158 (204)
                      |-..|+.+++..|++
T Consensus       207 AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  207 ARQGGHHELAERLVE  221 (669)
T ss_pred             HHhcCchHHHHHHHH
Confidence            999999998888877

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.70  E-value=8.3e-08  Score=75.18  Aligned_cols=63  Identities=24%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           89 LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        89 ~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      .++..+..|+||||.|+..|+...+..|+..|+++..       +|..|++|||.|+..|+.+++..+|.
T Consensus        47 ~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~-------kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   47 VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSI-------KNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccc-------cccccccHHHHHHHcCCHHHHHHHHH
Confidence            3444444445555555555555555555555444443       34455555555555555544444444

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.69  E-value=2.9e-08  Score=49.31  Aligned_cols=27  Identities=26%  Similarity=0.260  Sum_probs=18.7

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCch
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPE   49 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~   49 (204)
                      +|.||||+|+..|+.+++++|++.|++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            366777777777777777777775555

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.66  E-value=9.6e-08  Score=75.56  Aligned_cols=94  Identities=22%  Similarity=0.171  Sum_probs=68.8

Q ss_pred             HHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHc
Q 037875           28 LHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARY  107 (204)
Q Consensus        28 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  107 (204)
                      |.-|....+...+-.|+.+|... -..-..-+..|.|+||+||..|+ ..+.++|+-+++ ++...|..|+|+|+||.+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~-e~~~t~~~~~grt~LHLa~~~gn-Vvl~QLLiWyg~-dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSRE-EVNETCGEGDGRTALHLAARKGN-VVLAQLLIWYGV-DVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCch-hhhccccCCCCcchhhhhhhhcc-hhHHHHHHHhCc-cceecccCCchhhhhHhhc
Confidence            34455566677777778776542 11222334567888888888888 788888888887 7888888888888888888


Q ss_pred             CCHHHHHHHHhcccCCC
Q 037875          108 GKADIFNFLAGKIADYD  124 (204)
Q Consensus       108 ~~~~~~~~L~~~~~~~~  124 (204)
                      |..+++..|+.+|+...
T Consensus       705 ~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPDE  721 (749)
T ss_pred             ccHHHHHHHHHcCCCcc
Confidence            88888888888877533

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.49  E-value=5.5e-07  Score=71.44  Aligned_cols=90  Identities=21%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             HHHHHhcCCCHHHHHHHHhhCCC-cccc--ccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHH
Q 037875           66 LHATATSSRALPVADKLLRKAPG-LLGM--RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLH  142 (204)
Q Consensus        66 l~~a~~~~~~~~~~~~Ll~~~~~-~~~~--~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~  142 (204)
                      |.-|....+ ...+-+|+.+|.. .++.  .+.+|+|+||+||+.|+..+.++|+.+|+|...       +|..|+|+|.
T Consensus       628 Ll~A~~~~D-l~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~-------rda~g~t~l~  699 (749)
T KOG0705|consen  628 LLRAVAAED-LQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMA-------RDAHGRTALF  699 (749)
T ss_pred             HHHHHHHHH-HHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcccee-------cccCCchhhh
Confidence            334454444 5667788888763 2222  356789999999999999999999999999877       7999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhchhh
Q 037875          143 MAVISQHFELALEIAKEYKYLI  164 (204)
Q Consensus       143 ~a~~~~~~~~~~~Ll~~~g~~~  164 (204)
                      ||-+.|.-+|+..|+. +|+-.
T Consensus       700 yar~a~sqec~d~llq-~gcp~  720 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQ-YGCPD  720 (749)
T ss_pred             hHhhcccHHHHHHHHH-cCCCc
Confidence            9999999999999999 67653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.49  E-value=6.3e-07  Score=70.42  Aligned_cols=89  Identities=21%  Similarity=0.230  Sum_probs=69.2

Q ss_pred             hHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 037875           26 TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSA  105 (204)
Q Consensus        26 ~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  105 (204)
                      .|+|++......+-....+...   .+..++..|..|.||||+|+..|+ .+.++.|+..++ ++..++..|++|||-|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~---~~~~id~~D~~g~TpLhlAV~Lg~-~~~a~~Ll~a~A-dv~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK---VSLVIDRRDPPGRTPLHLAVRLGH-VEAARILLSAGA-DVSIKNNEGWSPLHEAV   96 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh---hhceeccccCCCCccHHHHHHhcC-HHHHHHHHhcCC-CccccccccccHHHHHH
Confidence            4588888877665544433321   122478888999999999999999 899999999998 78889999999999999


Q ss_pred             HcCCHHHHHHHHhc
Q 037875          106 RYGKADIFNFLAGK  119 (204)
Q Consensus       106 ~~~~~~~~~~L~~~  119 (204)
                      .+|+..++..++.+
T Consensus        97 ~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   97 STGNEQIITEVLRH  110 (560)
T ss_pred             HcCCHHHHHHHHHH
Confidence            99998777666543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.37  E-value=1.1e-06  Score=66.45  Aligned_cols=58  Identities=12%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCC
Q 037875           65 VLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYD  124 (204)
Q Consensus        65 ~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~  124 (204)
                      -|..||+.|+ .+.|++|++.|. ++|..|+...+||.+|+.-||.+++++|+++|+--+
T Consensus        39 elceacR~GD-~d~v~~LVetgv-nVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   39 ELCEACRAGD-VDRVRYLVETGV-NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             HHHHHhhccc-HHHHHHHHHhCC-CcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            3667788887 788888888777 788888888888888888888888888888877533

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.31  E-value=4.8e-06  Score=69.06  Aligned_cols=138  Identities=15%  Similarity=0.083  Sum_probs=105.6

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFR  103 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~  103 (204)
                      +.--...|++.|+...|+..++.... ....+|..|.-|.++++.|..+.+ .+++++|++... ..       ..+|-+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~-~~lninc~d~lGr~al~iai~nen-le~~eLLl~~~~-~~-------gdALL~   94 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAV-SKLNINCRDPLGRLALHIAIDNEN-LELQELLLDTSS-EE-------GDALLL   94 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccc-cccchhccChHhhhceeccccccc-HHHHHHHhcCcc-cc-------chHHHH
Confidence            44456789999999999999986544 335688899999999999999999 899999998864 22       468999


Q ss_pred             HHHcCCHHHHHHHHhcccCCCC---CCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCC
Q 037875          104 SARYGKADIFNFLAGKIADYDQ---PSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGM  172 (204)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~---~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~  172 (204)
                      |+..|..+.++.++.+-.....   .+......-..+.||+..||..++.||++.||.+ |+.+-.......
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g~~i~~PH~~~C  165 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-GHCIPIPHDIRC  165 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-CCCCCCCccccc
Confidence            9999999999999987433211   1111111234578999999999999999999994 888766544433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.25  E-value=2.8e-06  Score=71.80  Aligned_cols=131  Identities=19%  Similarity=0.139  Sum_probs=99.6

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH-hhCCCccccccCCCC
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL-RKAPGLLGMRNNNGE   98 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~   98 (204)
                      ....|.+.+|+++..+..-+++.+++-    ++......|..|...+|+++..+.  +..-++. ..+. .++.+|..|+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~----~~~~~~eld~d~qgV~hfca~lg~--ewA~ll~~~~~~-ai~i~D~~G~  642 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEW----AGSGDLELDRDGQGVIHFCAALGY--EWAFLPISADGV-AIDIRDRNGW  642 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcc----cccCchhhcccCCChhhHhhhcCC--ceeEEEEeeccc-ccccccCCCC
Confidence            344689999999999999888888874    122256778888999999776665  4333333 3443 7889999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           99 TALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        99 t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      ||||+|+.+|+..++..|.+.|++... ..++......|.|+-..|...|+..+..+|-+
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~-~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGA-VTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhcccccc-ccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            999999999999999999998887653 22334445678999999999998887776655

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.03  E-value=6.5e-06  Score=69.49  Aligned_cols=90  Identities=19%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             cCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCcc
Q 037875           60 KAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQST  139 (204)
Q Consensus        60 ~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t  139 (204)
                      ..|.+++|.|+..+. ..++++|++.++ +++..+..|++|+|.+...|+......|+++|++.+.       .+..|.+
T Consensus       654 ~~~~s~lh~a~~~~~-~~~~e~ll~~ga-~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a-------~~~~~~~  724 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGD-SGAVELLLQNGA-DVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA-------FDPDGKL  724 (785)
T ss_pred             hcccchhhhhhccch-HHHHHHHHhcCC-cchhhhccCCCcchhhhhhcccchhhhhccccccccc-------cCccCcc
Confidence            356788888888777 677788888877 6888888888888888888888888888888887776       4777888


Q ss_pred             HHHHHHHhCCHHHHHHHHH
Q 037875          140 VLHMAVISQHFELALEIAK  158 (204)
Q Consensus       140 ~l~~a~~~~~~~~~~~Ll~  158 (204)
                      |+.+|....+.+++-.+..
T Consensus       725 ~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  725 PLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             hhhHHhhhccccHHHHHhh
Confidence            8888766666665555555

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.02  E-value=1.1e-05  Score=68.11  Aligned_cols=84  Identities=21%  Similarity=0.213  Sum_probs=68.1

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALF  102 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  102 (204)
                      .|.++||.|+..+..-.++.|++.|++     +|..+..|.+|+|.+...|+ ...+..|+..++ +.+..+..|.+|+.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~-----vn~~d~~g~~plh~~~~~g~-~~~~~~ll~~~a-~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD-----VNALDSKGRTPLHHATASGH-TSIACLLLKRGA-DPNAFDPDGKLPLD  727 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc-----chhhhccCCCcchhhhhhcc-cchhhhhccccc-cccccCccCcchhh
Confidence            468888999999888888888886655     88888889999999888888 677778888777 78888888888998


Q ss_pred             HHHHcCCHHHH
Q 037875          103 RSARYGKADIF  113 (204)
Q Consensus       103 ~a~~~~~~~~~  113 (204)
                      +|....+.+..
T Consensus       728 ~a~~~~~~d~~  738 (785)
T KOG0521|consen  728 IAMEAANADIV  738 (785)
T ss_pred             HHhhhccccHH
Confidence            88776554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.94  E-value=2.5e-05  Score=59.43  Aligned_cols=57  Identities=14%  Similarity=0.013  Sum_probs=52.3

Q ss_pred             chHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCC
Q 037875           25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAP   87 (204)
Q Consensus        25 ~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~   87 (204)
                      .--|..||+.|+.+.|++|++-|.+     +|..|.....||.+|+.-|| ..+|++|++.|+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn-----VN~vD~fD~spL~lAsLcGH-e~vvklLLenGA   93 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN-----VNAVDRFDSSPLYLASLCGH-EDVVKLLLENGA   93 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC-----cchhhcccccHHHHHHHcCc-HHHHHHHHHcCC
Confidence            4557899999999999999995554     99999999999999999999 899999999997

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.93  E-value=3.4e-05  Score=53.26  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=36.3

Q ss_pred             hcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 037875           55 MTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGK  119 (204)
Q Consensus        55 ~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~  119 (204)
                      +|.+|..|-|+++.|+..|. .+.+.+|+.+|+..+...+..+.+.+.+|-..|..+++..|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~-~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGS-NEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcc-hhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            55555555555555555555 55555555555335555555555555555555555555555554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.86  E-value=8e-05  Score=51.46  Aligned_cols=64  Identities=17%  Similarity=0.156  Sum_probs=57.3

Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhcc-cCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHH
Q 037875           89 LLGMRNNNGETALFRSARYGKADIFNFLAGKI-ADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE  159 (204)
Q Consensus        89 ~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  159 (204)
                      +++.+|..|+|+++.|+..|..+.+.+|+.+| +.+..       ++..+.+.+.+|-+.|..+.+..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv-------~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV-------TDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccc-------cccccchHHHHHHhcChHHHHHHHHHH
Confidence            78889999999999999999999999999999 45444       688999999999999999999877773

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.70  E-value=0.00017  Score=60.26  Aligned_cols=96  Identities=19%  Similarity=0.140  Sum_probs=75.9

Q ss_pred             cccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcc-------
Q 037875           18 HVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLL-------   90 (204)
Q Consensus        18 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~-------   90 (204)
                      +..|.-|.++|++|....+.++.++|++....         .   ..+|..|+..+. .++|+.++.+.....       
T Consensus        56 nc~d~lGr~al~iai~nenle~~eLLl~~~~~---------~---gdALL~aI~~~~-v~~VE~ll~~~~~~~~~~~~~d  122 (822)
T KOG3609|consen   56 NCRDPLGRLALHIAIDNENLELQELLLDTSSE---------E---GDALLLAIAVGS-VPLVELLLVHFVDAPYLERSGD  122 (822)
T ss_pred             hccChHhhhceecccccccHHHHHHHhcCccc---------c---chHHHHHHHHHH-HHHHHHHHhcccccchhccccc
Confidence            34566799999999999999999999994321         1   577888899998 899999998654110       


Q ss_pred             --ccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCC
Q 037875           91 --GMRNNNGETALFRSARYGKADIFNFLAGKIADYDQP  126 (204)
Q Consensus        91 --~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~  126 (204)
                        ...-..+.||+..|+..++.++++.|+.+|+.+..+
T Consensus       123 ~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  123 ANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             cCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence              112235779999999999999999999999987655

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.69  E-value=7.6e-05  Score=58.70  Aligned_cols=73  Identities=18%  Similarity=0.052  Sum_probs=57.4

Q ss_pred             HHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCcch
Q 037875          110 ADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAF  185 (204)
Q Consensus       110 ~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~~~  185 (204)
                      .+.+++|.+++...|.. ..+-..+..-.|+||+|+..|..+++.+||+ .|+|+..+|..|.||..++. +.++.
T Consensus       404 p~~ie~lken~lsgnf~-~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~-nkdVk  476 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFD-VTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA-NKDVK  476 (591)
T ss_pred             hhHHHHHHhcCCccccc-ccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc-cHHHH
Confidence            67788999988876541 1122234556789999999999999999999 59999999999999998887 44443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.36  E-value=0.00022  Score=60.79  Aligned_cols=117  Identities=15%  Similarity=0.026  Sum_probs=80.0

Q ss_pred             hcccccCCCcHHHHHHhcCCCHHHHHHHHhh-CCCccccccCCCCcHHHHHHHcCCHHHHHHHH-hcccCCCCCCCCccc
Q 037875           55 MTRQNKAGNTVLHATATSSRALPVADKLLRK-APGLLGMRNNNGETALFRSARYGKADIFNFLA-GKIADYDQPSKQPFL  132 (204)
Q Consensus        55 ~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~-~~~~~~~~~~~~~~~  132 (204)
                      .......|.+.+|+++..+. .-+++.+++. +. .....+..+...+|. |..++.+..-++. ..|..++       +
T Consensus       567 ~~~~~~r~~lllhL~a~~ly-awLie~~~e~~~~-~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~-------i  636 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLY-AWLIEKVIEWAGS-GDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAID-------I  636 (975)
T ss_pred             cccCCCcchHHHHHHHHHhH-HHHHHHHhccccc-CchhhcccCCChhhH-hhhcCCceeEEEEeecccccc-------c
Confidence            44556678999999999998 6777777775 33 444456666666776 4444444433332 2344444       4


Q ss_pred             cCCCCccHHHHHHHhCCHHHHHHHHHHhchhhc------ccCCCCCCHhHHhccCC
Q 037875          133 QRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQLLSCKP  182 (204)
Q Consensus       133 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~------~~~~~g~t~l~~a~~~~  182 (204)
                      +|..|+||||+|+.+|+..++..|+. .|++..      ...-.|.|+..++..++
T Consensus       637 ~D~~G~tpL~wAa~~G~e~l~a~l~~-lga~~~~~tdps~~~p~g~ta~~la~s~g  691 (975)
T KOG0520|consen  637 RDRNGWTPLHWAAFRGREKLVASLIE-LGADPGAVTDPSPETPGGKTAADLARANG  691 (975)
T ss_pred             ccCCCCcccchHhhcCHHHHHHHHHH-hccccccccCCCCCCCCCCchhhhhhccc
Confidence            79999999999999999999999987 455433      33455888888876543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.14  E-value=0.00043  Score=54.62  Aligned_cols=42  Identities=24%  Similarity=0.203  Sum_probs=23.1

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHH
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATA   70 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~   70 (204)
                      ..|+||+|+..|..++|.+||+.|.|     +..+|..|.||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~D-----p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCD-----PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCC-----chhcccCCCCcccccc
Confidence            44556666666666666666654433     4455555566655544

>smart00248 ANK ankyrin repeats

Probab=96.85  E-value=0.0028  Score=29.02  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=11.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhccc
Q 037875           98 ETALFRSARYGKADIFNFLAGKIA  121 (204)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~L~~~~~  121 (204)
                      .||+++++..++.++++.|+..+.
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC
Confidence            445555555555555555554433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.82  E-value=0.0022  Score=29.42  Aligned_cols=28  Identities=21%  Similarity=0.156  Sum_probs=24.0

Q ss_pred             CccHHHHHHHhCCHHHHHHHHHHhchhhc
Q 037875          137 QSTVLHMAVISQHFELALEIAKEYKYLIG  165 (204)
Q Consensus       137 g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~  165 (204)
                      |.||+|+++..++.++++.|+. .+.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~-~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLD-KGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence            7899999999999999999998 466543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.69  E-value=0.54  Score=32.85  Aligned_cols=111  Identities=12%  Similarity=0.014  Sum_probs=70.0

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHH----HHHHhhCCCccccccC--C
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVA----DKLLRKAPGLLGMRNN--N   96 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~----~~Ll~~~~~~~~~~~~--~   96 (204)
                      ..++.+-.||+..+.++|+|+-+.          ..-.+-.+.+..|....+ .++.    +++..+.... ...+.  -
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qn----------L~i~~~~~iFdIA~~~kD-lsLyslGY~l~~~~~~~~-~~~d~~~l  142 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQN----------LHIYNPEDIFDIAFAKKD-LSLYSLGYKLLFNRMMSE-HNEDPTSL  142 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhc----------cCCCCchhhhhhhhhccc-hhHHHHHHHHHHhhcccc-cccCHHHH
Confidence            456777789999999999999552          122233456667777776 4541    2222222100 00000  0


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           97 GETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      -...|..|+..|-.+.+.-.+.+|.+++             .+.|..|+.+++..+..+++.
T Consensus       143 l~~hl~~a~~kgll~F~letlkygg~~~-------------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  143 LTQHLEKAAAKGLLPFVLETLKYGGNVD-------------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHcCCccc-------------HHHHHHHHHhhHHHHHHHhhc
Confidence            1134567888999998887888877533             378999999999999887753

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.33  E-value=0.37  Score=34.85  Aligned_cols=46  Identities=20%  Similarity=0.291  Sum_probs=26.0

Q ss_pred             HHHHHHHHhhCCCccccc---cCCCCcHHHHHHHcCCHHHHHHHHhccc
Q 037875           76 LPVADKLLRKAPGLLGMR---NNNGETALFRSARYGKADIFNFLAGKIA  121 (204)
Q Consensus        76 ~~~~~~Ll~~~~~~~~~~---~~~~~t~l~~a~~~~~~~~~~~L~~~~~  121 (204)
                      ..+++++++.|-.++|.+   -.+|.|.|.-|..+++.+++..|+++|+
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            445566666554344332   3355566666666666666666666655

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.94  E-value=0.53  Score=27.88  Aligned_cols=49  Identities=18%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             chHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhC
Q 037875           25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKA   86 (204)
Q Consensus        25 ~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~   86 (204)
                      ...+..|+..|+.++++.+++.+.         .+   ...+..|+...+ -+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~---------~~---~~~l~~AI~~H~-n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK---------PD---NDCLEYAIKSHN-NEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc---------cH---HHHHHHHHHHhh-HHHHHHHHHhc
Confidence            455677777777777777776321         11   345666776666 67777777653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.92  E-value=0.58  Score=27.71  Aligned_cols=49  Identities=22%  Similarity=0.207  Sum_probs=36.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc
Q 037875           99 TALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK  161 (204)
Q Consensus        99 t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g  161 (204)
                      .-+..|+..|+.++++.++..+.              .....+..|+...+.+++++|++.+.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~--------------~~~~~l~~AI~~H~n~i~~~l~~~y~   56 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK--------------PDNDCLEYAIKSHNNEIADWLIENYN   56 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc--------------cHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence            35678888889998888876421              12456888888888999999988643

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.57  E-value=2.1  Score=31.11  Aligned_cols=116  Identities=14%  Similarity=0.112  Sum_probs=73.0

Q ss_pred             HHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccccc----CCCCcHHHHH
Q 037875           29 HMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRN----NNGETALFRS  104 (204)
Q Consensus        29 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~t~l~~a  104 (204)
                      --|+...+.+-+.-++....            .-.+++.+++..+. .+++.+|++.-.  ....|    ..+..-+.++
T Consensus       158 edAV~AsN~~~i~~~VtdKk------------dA~~Am~~si~~~K-~dva~~lls~f~--ft~~dv~~~~~~~ydieY~  222 (284)
T PF06128_consen  158 EDAVKASNYEEISNLVTDKK------------DAHQAMWLSIGNAK-EDVALYLLSKFN--FTKQDVASMEKELYDIEYL  222 (284)
T ss_pred             HHHHhhcCHHHHHHHhcchH------------HHHHHHHHHhcccH-HHHHHHHHhhcc--eecchhhhcCcchhhHHHH
Confidence            34555555555555554221            12467777887776 678888886532  22222    1123344454


Q ss_pred             HHc--CCHHHHHHHHhccc-CCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhh
Q 037875          105 ARY--GKADIFNFLAGKIA-DYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLI  164 (204)
Q Consensus       105 ~~~--~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~  164 (204)
                      ...  .+..++++++++|. ++|.    +..+-++|.|-|.-|.++++.+++..||. +|+-.
T Consensus       223 LS~h~a~~kvL~~Fi~~Glv~vN~----~F~~~NSGdtMLDNA~Ky~~~emi~~Llk-~GA~~  280 (284)
T PF06128_consen  223 LSEHSASYKVLEYFINRGLVDVNK----KFQKVNSGDTMLDNAMKYKNSEMIAFLLK-YGAIS  280 (284)
T ss_pred             HhhcCCcHHHHHHHHhccccccch----hhhccCCcchHHHhHHhcCcHHHHHHHHH-cCccc
Confidence            432  35678888888875 4443    23355789999999999999999999988 78743

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=82.93  E-value=14  Score=26.11  Aligned_cols=84  Identities=14%  Similarity=0.186  Sum_probs=53.8

Q ss_pred             cCCchHHHHHHhcCChHHHHH----HHhhCchhhhhhhccccc--CCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccC
Q 037875           22 VHDDTVLHMATYFKRDDLALK----LLDEIPELYIHKMTRQNK--AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNN   95 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~~~~~--~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~   95 (204)
                      .+-.+.+.+|...++.++...    +..+...     -...|.  --..-|.+|+..|- ..++...+.+|. +++    
T Consensus       102 ~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~-----~~~~d~~~ll~~hl~~a~~kgl-l~F~letlkygg-~~~----  170 (192)
T PF03158_consen  102 YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMS-----EHNEDPTSLLTQHLEKAAAKGL-LPFVLETLKYGG-NVD----  170 (192)
T ss_pred             CCchhhhhhhhhccchhHHHHHHHHHHhhccc-----ccccCHHHHHHHHHHHHHHCCC-HHHHHHHHHcCC-ccc----
Confidence            345667789999998876221    2222111     000010  01124778899898 888877788886 443    


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh
Q 037875           96 NGETALFRSARYGKADIFNFLAG  118 (204)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~L~~  118 (204)
                        .+.+..|+.+.+..++.+++.
T Consensus       171 --~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  171 --IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             --HHHHHHHHHhhHHHHHHHhhc
Confidence              278999999999999988763

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	4e-09
2rfa_A	232	Transient receptor potential cation channel subfa	3e-07
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	1e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	8e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-06
2pnn_A	273	Transient receptor potential cation channel subfa	7e-07
2pnn_A	273	Transient receptor potential cation channel subfa	5e-06
2pnn_A	273	Transient receptor potential cation channel subfa	6e-06
2pnn_A	273	Transient receptor potential cation channel subfa	9e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-04

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 27/168 (16%), Positives = 46/168 (27%), Gaps = 29/168 (17%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T L  A  F+  +    ++D +P     ++   NK GN+ LH     +    VA + +  
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-EDVAMRFVEM 233

Query: 86  APGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQ------PFLQRN 135
                G    M +N     L+ S R     +   L  K   +   +            R 
Sbjct: 234 -----GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288

Query: 136 DQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
                +  A      E+        + L             G      
Sbjct: 289 VWLDFVPAAADPSKQEVL-------QLLQEKLDEVVRSLNTGAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 57/190 (30%)

Query: 23  HDDTVLHMATYFKRDDLALKLLD-------------------EIPELYIHKMTRQNKAGN 63
           H    +H+A    + DL + L++                   E+ E+  H    ++  G 
Sbjct: 83  HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHV---KHCKGQ 139

Query: 64  TVLH-ATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFL-- 116
           T LH         L +   L++      G     ++   ET L R+  +   +  + +  
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQL-----GASPTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 117 ---AGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EK 167
              +      D  +          ++ LH A++    ++A          +        +
Sbjct: 195 TVPSKSSLRLDYAN-------KQGNSHLHWAILINWEDVA-------MRFVEMGIDVNME 240

Query: 168 DMDGMTALQL 177
           D +    L L
Sbjct: 241 DNEHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 26/128 (20%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
            +      +H  A          +L+       G    ++N  G TAL  + ++G  D  
Sbjct: 16  SDDENMEKIHV-AARKGQTDEVRRLIET-----GVSPTIQNRFGCTALHLACKFGCVDTA 69

Query: 114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMT 173
            +LA     +                 +H+AV++   +L          L+      G  
Sbjct: 70  KYLASVGEVHS---------LWHGQKPIHLAVMANKTDLV-------VALVEGAKERGQM 113

Query: 174 ALQLLSCK 181
              LL+  
Sbjct: 114 PESLLNEC 121

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 15/172 (8%), Positives = 46/172 (26%), Gaps = 42/172 (24%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHK--MTRQNKAGNTVLHATATSSRALPVADKLL 83
           + LH A     +D+A++ ++           +  ++      L+  +  +  + +  +LL
Sbjct: 213 SHLHWAILINWEDVAMRFVE-------MGIDVNMEDNEHTVPLYL-SVRAAMVLLTKELL 264

Query: 84  RKAPGLLG------------MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPF 131
           +K    L                      +  +A   K ++   L  K+ +  +      
Sbjct: 265 QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR------ 318

Query: 132 LQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
              N  +             +        +  +        +      +  +
Sbjct: 319 -SLNTGAGGAVKRKKKAAPAVK-------RMKLAPSAPVRTRSRSRARSSAV 362

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 37/165 (22%), Positives = 55/165 (33%), Gaps = 34/165 (20%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIH--KMTRQNKAGNTVLHATATSSRALPVADKLL 83
           T LH+A    + ++A  LL               ++  GNT LH  A     L     L 
Sbjct: 47  TPLHLAVITNQPEIAEALLG-------AGCDPELRDFRGNTPLHL-ACEQGCLASVGVLT 98

Query: 84  RK-----APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS 138
           +         +L   N NG T L  ++ +G   I   L    AD +           +  
Sbjct: 99  QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC------NGR 152

Query: 139 TVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
           T LH+AV  Q+ +L          L+            G +  QL
Sbjct: 153 TALHLAVDLQNPDLV-------SLLLKCGADVNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 32/165 (19%)

Query: 25  DTVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATATSSRALPVADK 81
           D+ LH+A   +   L +    E+          +  QN    T LH  A  +    +A+ 
Sbjct: 9   DSFLHLAIIHEEKALTM----EVIRQVKGDLAFLNFQNNLQQTPLH-LAVITNQPEIAEA 63

Query: 82  LLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ 137
           LL       G    +R+  G T L  +   G       L          S        + 
Sbjct: 64  LLGA-----GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK-ATNYNG 117

Query: 138 STVLHMAVISQHFELALEIAKEYKYLIG------EKD-MDGMTAL 175
            T LH+A I  +  +        + L+        ++  +G TAL
Sbjct: 118 HTCLHLASIHGYLGIV-------ELLVSLGADVNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 24/94 (25%)

Query: 94  NNNGETALFRSARYG----KADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQH 149
             +G++ L  +  +       ++   + G +A  +        Q N Q T LH+AVI+  
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-------QNNLQQTPLHLAVITNQ 57

Query: 150 FELALEIAKEYKYLIG------EKDMDGMTALQL 177
            E+A       + L+G       +D  G T L L
Sbjct: 58  PEIA-------EALLGAGCDPELRDFRGNTPLHL 84

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.3 bits (137), Expect = 5e-10
 Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 32/159 (20%)

Query: 26  TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
           T LH+A  + R D A +LL+   +           Q+  G T LHA A S+ A  V   L
Sbjct: 59  TALHLAARYSRSDAAKRLLEASADANI--------QDNMGRTPLHA-AVSADAQGVFQIL 109

Query: 83  LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLH 142
           +R     L  R ++G T L  +AR     +   L    AD +          +   + LH
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-------DLGKSALH 162

Query: 143 MAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
            A    + + A         L+        ++    T L
Sbjct: 163 WAAAVNNVDAA-------VVLLKNGANKDMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 34/162 (20%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T LH A       +  ++L       +     +   G T L   A       + + L+  
Sbjct: 92  TPLHAAVSADAQGVF-QILIRNRATDLDA---RMHDGTTPLI-LAARLAVEGMLEDLINS 146

Query: 86  APGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL 141
                       ++ G++AL  +A     D    L    A+ D        Q N + T L
Sbjct: 147 -----HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-------QNNREETPL 194

Query: 142 HMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
            +A     +E A       K L+         D        +
Sbjct: 195 FLAAREGSYETA-------KVLLDHFANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 33/137 (24%)

Query: 58  QNKAGNTVLHATATSSRALP------------VADKLLRKAPGLLGMRNNNGETALFRSA 105
           +   G T L   + S   L             V    + +   L    +  GETAL  +A
Sbjct: 6   RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA 65

Query: 106 RYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG 165
           RY ++D    L    AD +        Q N   T LH AV +        +    + LI 
Sbjct: 66  RYSRSDAAKRLLEASADANI-------QDNMGRTPLHAAVSADA----QGVF---QILIR 111

Query: 166 -------EKDMDGMTAL 175
                   +  DG T L
Sbjct: 112 NRATDLDARMHDGTTPL 128

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 35/146 (23%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATATSSRALPVADKL 82
           T L +A     + +         E  I+    +   +  G + LH  A  +  +  A  L
Sbjct: 126 TPLILAARLAVEGML--------EDLINSHADVNAVDDLGKSALHWAAAVNN-VDAAVVL 176

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS 138
           L+      G    M+NN  ET LF +AR G  +    L    A+ D       +  +   
Sbjct: 177 LKN-----GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD-------ITDHMDR 224

Query: 139 TVLHMAVISQHFELALEIAKEYKYLI 164
               +A    H ++        + L 
Sbjct: 225 LPRDIAQERMHHDIV-------RLLD 243

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.7 bits (138), Expect = 6e-10
 Identities = 38/164 (23%), Positives = 56/164 (34%), Gaps = 39/164 (23%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHK--MTRQNKAGNTVLHATATSSRALPVADKLL 83
           T LH+A      ++   LL         +      NK+G T LH  A     +PVAD L+
Sbjct: 247 TPLHLAAQEGHAEMVALLLS-------KQANGNLGNKSGLTPLHLVAQEGH-VPVADVLI 298

Query: 84  RKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQST 139
           +      G         G T L  ++ YG   +  FL    AD +  +           +
Sbjct: 299 KH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT-------KLGYS 346

Query: 140 VLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
            LH A    H ++          L+       E   DG T L +
Sbjct: 347 PLHQAAQQGHTDIV-------TLLLKNGASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.7 bits (130), Expect = 6e-09
 Identities = 33/163 (20%), Positives = 49/163 (30%), Gaps = 41/163 (25%)

Query: 26  TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
           T LH+A++     +   LL                 N    T LH  A  +    VA  L
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASP--------NVSNVKVETPLHM-AARAGHTEVAKYL 66

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS 138
           L+            +  + +T L  +AR G  ++   L    A+ +       L      
Sbjct: 67  LQN-----KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN-------LATTAGH 114

Query: 139 TVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
           T LH+A    H E           L+            G T L
Sbjct: 115 TPLHIAAREGHVETV-------LALLEKEASQACMTKKGFTPL 150

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATATSSRALPVADKL 82
           T LH+A  + +  +A +LL       + +        K G T LH  A     L +   L
Sbjct: 148 TPLHVAAKYGKVRVA-ELL-------LERDAHPNAAGKNGLTPLHV-AVHHNNLDIVKLL 198

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS 138
           L +     G        NG T L  +A+  + ++   L       +  S           
Sbjct: 199 LPR-----GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES-------VQGV 246

Query: 139 TVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
           T LH+A    H E+          L+         +  G+T L L
Sbjct: 247 TPLHLAAQEGHAEMV-------ALLLSKQANGNLGNKSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.3 bits (124), Expect = 4e-08
 Identities = 34/162 (20%), Positives = 52/162 (32%), Gaps = 39/162 (24%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIH--KMTRQNKAGNTVLHATATSSRALPVADKLL 83
           T LH A      ++   LL+       +         AG+T LH  A     +     LL
Sbjct: 82  TPLHCAARIGHTNMVKLLLE-------NNANPNLATTAGHTPLHI-AAREGHVETVLALL 133

Query: 84  RKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQST 139
            K               G T L  +A+YGK  +   L  + A  +           +  T
Sbjct: 134 EK-----EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-------AGKNGLT 181

Query: 140 VLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
            LH+AV   + ++        K L+           +G T L
Sbjct: 182 PLHVAVHHNNLDIV-------KLLLPRGGSPHSPAWNGYTPL 216

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 24/157 (15%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T LH+        +A  L+     +         + G T LH  A+    + +   LL+ 
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMV-----DATTRMGYTPLHV-ASHYGNIKLVKFLLQH 333

Query: 86  APGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL 141
                      +   G + L ++A+ G  DI   L    A        P    +D +T L
Sbjct: 334 -----QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-------PNEVSSDGTTPL 381

Query: 142 HMAVISQHFELA--LEIAKEYKYLIGEKDMDGMTALQ 176
            +A    +  +   L++  +    +   D   M+  +
Sbjct: 382 AIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 30/130 (23%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
             ++G T LH  A+    LP+   LL++     G    + N   ET L  +AR G  ++ 
Sbjct: 10  GGESGLTPLHV-ASFMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EK 167
            +L    A  +  +        D  T LH A    H  +        K L+         
Sbjct: 64  KYLLQNKAKVNAKA-------KDDQTPLHCAARIGHTNMV-------KLLLENNANPNLA 109

Query: 168 DMDGMTALQL 177
              G T L +
Sbjct: 110 TTAGHTPLHI 119

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 23/125 (18%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIH--KMTRQNKAGNTVLHATATSSRALPVADKLL 83
           T LH+A+++    L   LL        H   +  + K G + LH  A       +   LL
Sbjct: 313 TPLHVASHYGNIKLVKFLLQ-------HQADVNAKTKLGYSPLHQ-AAQQGHTDIVTLLL 364

Query: 84  RKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQST 139
           +      G      +++G T L  + R G   + + L     +              + +
Sbjct: 365 KN-----GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV----SDKHRMS 415

Query: 140 VLHMA 144
                
Sbjct: 416 FPETV 420

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 41/177 (23%)

Query: 23  HDDTVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATATSSRALPVA 79
           H+ TVLH        + +  L+    +  I     +   +   NT L     + R   + 
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR-RRLV 182

Query: 80  DKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFL---AGKIADYDQPSKQPFL 132
             L++      G    + N +  +AL ++A      +  ++        D ++       
Sbjct: 183 AYLMKA-----GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD----- 232

Query: 133 QRNDQSTVLHMAVISQHFELALEIAKEYKYLI--------------GEKDMDGMTAL 175
              +  T L +   ++  +  +  A   K L+                +   G TAL
Sbjct: 233 --RNGMTALMIVAHNEGRD-QVASA---KLLVEKGAKVDYDGAARKDSEKYKGRTAL 283

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 31/134 (23%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLGM-------RNNNGETALFRSARYGKA 110
             +   TVLH    S+ +   ++ L+                 + +  T L  +    + 
Sbjct: 121 DPRHNRTVLHW-IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179

Query: 111 DIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG----- 165
            +  +L    AD              + + LH A  ++ F +         Y++      
Sbjct: 180 RLVAYLMKAGADPTI-------YNKSERSALHQAAANRDFGMM-------VYMLNSTKLK 225

Query: 166 ----EKDMDGMTAL 175
               E D +GMTAL
Sbjct: 226 GDIEELDRNGMTAL 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 19/126 (15%), Positives = 26/126 (20%), Gaps = 18/126 (14%)

Query: 59  NKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAG 118
                        +                +           L   A  G   I   +  
Sbjct: 58  QHYSLYPNPQGYGNGNDFLG--DFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITR 114

Query: 119 KIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA-LEIAKEYKYLIG------EKDMDG 171
           +  +   P            TVLH    +   E +   I  E K  I         D D 
Sbjct: 115 ESVNIIDP--------RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166

Query: 172 MTALQL 177
            T L L
Sbjct: 167 NTPLML 172

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 34/169 (20%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELY-IHKMTRQNKAGNTVLH-ATATSSRALPVADKLL 83
           + LH A   +   + + +L+       I +    ++ G T L        R    + KLL
Sbjct: 201 SALHQAAANRDFGMMVYMLNSTKLKGDIEE---LDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 84  --------RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI-ADYDQPSKQPFLQR 134
                                G TAL  +A+     I  +L G+  ++ D+       Q 
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-------QD 310

Query: 135 NDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
            D  T + +A      E+         YLI         D    TA QL
Sbjct: 311 EDGKTPIMLAAQEGRIEVV-------MYLIQQGASVEAVDATDHTARQL 352

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 47/180 (26%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYI-----HKMTR-----------QNKAGNTVLHAT 69
           + + MA   +  +           L           +           Q ++  T LH  
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA 218

Query: 70  ATS--SRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADY 123
             S   +   VA+ LLRK     G     +N +  T L  +A     D+   L    A  
Sbjct: 219 VASLHPKRKQVAELLLRK-----GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273

Query: 124 DQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
           +          +   T LH A ++ H +         + L+          + G TA Q+
Sbjct: 274 NA-------LDSLGQTALHRAALAGHLQTC-------RLLLSYGSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 30/130 (23%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
            +   +T LH  A     + +   LL+      G     ++  G   L  +  YG  ++ 
Sbjct: 54  SDGRKSTPLHL-AAGYNRVRIVQLLLQH-----GADVHAKDKGGLVPLHNACSYGHYEVT 107

Query: 114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EK 167
             L    A  +            Q T LH A      E+          L+         
Sbjct: 108 ELLLKHGACVNA-------MDLWQFTPLHEAASKNRVEVC-------SLLLSHGADPTLV 153

Query: 168 DMDGMTALQL 177
           +  G +A+ +
Sbjct: 154 NCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 43/176 (24%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIH--KMTRQNKAGNTVLHATATSSRALPVADKLL 83
             LH A  +   ++   LL        H   +   +    T LH  A S   + V   LL
Sbjct: 93  VPLHNACSYGHYEVTELLLK-------HGACVNAMDLWQFTPLHE-AASKNRVEVCSLLL 144

Query: 84  RKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSK----------- 128
                  G    + N +G++A+  +      +   +     +      +           
Sbjct: 145 SH-----GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199

Query: 129 ---QPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
                F Q     T LH AV S H +   ++A   + L+       EK+ D MT L
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKR-KQVA---ELLLRKGANVNEKNKDFMTPL 251

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 29/173 (16%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T LH+A  +   + A+ L++  PEL    MT +   G T LH  A  ++ + +   LL +
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH-IAVINQNVNLVRALLAR 97

Query: 86  ------------APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQ 133
                                  GE  L  +A  G  +I   L    AD          Q
Sbjct: 98  GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA-------Q 150

Query: 134 RNDQSTVLHMAVISQHFELALEIAK---------EYKYLIGEKDMDGMTALQL 177
            +  +TVLH+ ++  +   A ++             K L    +  G+T  +L
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 34/177 (19%)

Query: 25  DTVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATATSSRALPVADK 81
           ++ L +A            +  + +L   +   + ++   G T LH  A     L  A  
Sbjct: 4   ESPLLLAAKEND-------VQALSKLLKFEGCEVHQRGAMGETALHI-AALYDNLEAAMV 55

Query: 82  LLRKAPGLLGM----RNNNGETALFRSARYGKADIFNFLAGKIAD------YDQPSKQPF 131
           L+  AP L+          G+TAL  +      ++   L  + A             +P 
Sbjct: 56  LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115

Query: 132 LQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQLLSCKP 182
                    L  A      E+        + LI        +D  G T L +L  +P
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIV-------RLLIEHGADIRAQDSLGNTVLHILILQP 165

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 26  TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSR---ALPVA 79
             L  A     +++   L++   +I          Q+  GNTVLH          A  + 
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRA--------QDSLGNTVLHILILQPNKTFACQMY 174

Query: 80  DKLLRK-----APGLLGMRNNNGETALFRSARYGKADIFNFL 116
           + LL          L  + NN G T    +   G   +F  L
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 20/158 (12%), Positives = 41/158 (25%), Gaps = 33/158 (20%)

Query: 25  DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR 84
              +  A Y        +L  E  ++            +T      +  R   +    + 
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIY-----ITDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 85  KAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMA 144
           +       +  + +  L  +A+ G               +             ST L+ A
Sbjct: 68  E-------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-------LDKAGSTALYWA 113

Query: 145 VISQHFELALEIAKEYKYLIG-------EKDMDGMTAL 175
               H     +I    + L         +++  G TAL
Sbjct: 114 CHGGH----KDIV---EMLFTQPNIELNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 26/160 (16%)

Query: 23  HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
             D  LH A          + LD    +        +KAG+T L+  A       + + L
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDNRVGV-----NGLDKAGSTALYW-ACHGGHKDIVEML 125

Query: 83  LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLH 142
             +    L  +N  G+TAL  +A  G ADI   L  K A  D       L+  ++     
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD-------LRNIEKKLAFD 178

Query: 143 MAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQ 176
           MA  +    L        K   G        + +     +
Sbjct: 179 MATNAACASLL-------KKKQGTDAVRTLSNAEDYLDDE 211

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 41/164 (25%)

Query: 25  DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR 84
           DT     T   R  L       IP  Y+ +   Q ++ +  LH  A     L    + L 
Sbjct: 46  DTNWWKGTSKGRTGL-------IPSNYVAE---QAESIDNPLHE-AAKRGNLSWLRECLD 94

Query: 85  KAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKI-ADYDQPSKQPFLQRNDQST 139
                        +  G TAL+ +   G  DI   L  +   + +Q       Q     T
Sbjct: 95  N-----RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-------QNKLGDT 142

Query: 140 VLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
            LH A    +     +I +    L+        ++++   A  +
Sbjct: 143 ALHAAAWKGY----ADIVQ---LLLAKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 16/110 (14%), Positives = 25/110 (22%), Gaps = 34/110 (30%)

Query: 93  RNNNGETALFRSARYGKADIFNFLAGKIADYDQ---------------------PSKQPF 131
               G+  +FR+    +    + L  +  D                        PS    
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 132 LQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
            Q       LH A    +           +  +         D  G TAL
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWL-------RECLDNRVGVNGLDKAGSTAL 110

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 28/164 (17%)

Query: 26  TVLHMATYFKRDDLALKLLD-------EIPELYI-HKMTRQNKAGNTVLHATATSSRALP 77
           T LH+A   +    A  LL        +  + Y+           +      +  +    
Sbjct: 80  TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139

Query: 78  VADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ 137
              +       L    N +G T L  +  +  A++   L    AD ++P           
Sbjct: 140 EEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP------TCG 192

Query: 138 STVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
            T LH+AV +Q   +        + L+        +   G T L
Sbjct: 193 RTPLHLAVEAQAASVL-------ELLLKAGADPTARMYGGRTPL 229

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.2 bits (121), Expect = 7e-08
 Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 20/163 (12%)

Query: 26  TVLHMATYFKRDDLALKLLDE-IPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR 84
           T LH+A   + +     LL       Y+     QN  G T LH  A         +KL  
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDL---QNDLGQTALHL-AAILGEASTVEKLYA 66

Query: 85  KAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQ------R 134
                 G    +    G TAL  + R         L      + + +   +L        
Sbjct: 67  A-----GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 135 NDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL 177
           +       +              ++++  +  ++ DG T L +
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 17/93 (18%)

Query: 89  LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQ 148
           + G    +G+TAL  +  +      +FL G  A ++        Q +   T LH+A I  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL----QNDLGQTALHLAAILG 56

Query: 149 HFELALEIAKEYKYLIG------EKDMDGMTAL 175
                       + L          +  G TAL
Sbjct: 57  EASTV-------EKLYAAGAGVLVAERGGHTAL 82

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 21/126 (16%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLA 117
           +N  G+T LH          +   L      L       G T L  +     A +   L 
Sbjct: 154 ENYDGHTPLHVAVIHKD-AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212

Query: 118 GKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDG 171
              AD          +     T L  A++  +  LA       + L        E   D 
Sbjct: 213 KAGADPTA-------RMYGGRTPLGSALLRPNPILA-------RLLRAHGAPEPEDGGDK 258

Query: 172 MTALQL 177
           ++    
Sbjct: 259 LSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 28/142 (19%)

Query: 26  TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
           T LH+A   K  ++   L D   ++ +        +   G T LH  A  ++A  V + L
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNK-------PEPTCGRTPLHL-AVEAQAASVLELL 211

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS 138
           L+      G     R   G T L  +       +   L    A   +          D+ 
Sbjct: 212 LKA-----GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG-------GDKL 259

Query: 139 TVLHMAVISQHFELALEIAKEY 160
           +    +      +   +   EY
Sbjct: 260 SPCSSSGSDSDSDNR-DEGDEY 280

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 21/124 (16%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLA 117
           ++  G+T LH  A       V   LL      +  +++ G T +  +  Y   D+   L 
Sbjct: 73  KDAEGSTCLHL-AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131

Query: 118 GKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDG 171
            K +D +        + N+++  LH A  S      ++IA   + L+         ++ G
Sbjct: 132 SKGSDINI-------RDNEENICLHWAAFSGC----VDIA---EILLAAKCDLHAVNIHG 177

Query: 172 MTAL 175
            + L
Sbjct: 178 DSPL 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 31/129 (24%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
           +++   + LHA A  +  + +   L++      G      + +  T L  +A     +  
Sbjct: 7   EHQNKRSPLHA-AAEAGHVDICHMLVQA-----GANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG-------E 166
            +L    A  D        +  + ST LH+A    H     E+    +YL+         
Sbjct: 61  KYLIKAGALVDP-------KDAEGSTCLHLAAKKGH----YEVV---QYLLSNGQMDVNC 106

Query: 167 KDMDGMTAL 175
           +D  G T +
Sbjct: 107 QDDGGWTPM 115

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 4e-07
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 34/162 (20%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T LH+A      ++  + L    ++ ++    Q+  G T +   AT  + + +   LL K
Sbjct: 79  TCLHLAAKKGHYEVV-QYLLSNGQMDVNC---QDDGGWTPMIW-ATEYKHVDLVKLLLSK 133

Query: 86  APGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL 141
                G    +R+N     L  +A  G  DI   L     D                + L
Sbjct: 134 -----GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA-------VNIHGDSPL 181

Query: 142 HMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
           H+A     ++            +        K+ +G T LQ 
Sbjct: 182 HIAARENRYDCV-------VLFLSRDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 20/90 (22%)

Query: 92  MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFE 151
           M + N  + L  +A  G  DI + L    A+ D           DQ T L  A  + H  
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-------CSEDQRTPLMEAAENNH-- 56

Query: 152 LALEIAKEYKYLIG------EKDMDGMTAL 175
             LE     KYLI        KD +G T L
Sbjct: 57  --LEAV---KYLIKAGALVDPKDAEGSTCL 81

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 35/147 (23%)

Query: 26  TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
           T +  AT +K  DL   LL    +I          ++   N  LH  A  S  + +A+ L
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDI--------NIRDNEENICLHW-AAFSGCVDIAEIL 163

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS 138
           L              N +G++ L  +AR  + D       + +D    +        +  
Sbjct: 164 LAA-----KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN-------KEGE 211

Query: 139 TVLHMAVISQHFELALEIAKEYKYLIG 165
           T L  A ++     A         +  
Sbjct: 212 TPLQCASLNSQVWSA-------LQMSK 231

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 35/164 (21%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T  H+A      ++   L D   +  ++K       G T LH  A   +   V+  L+  
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLNK---ITNQGVTCLHL-AVGKKWFEVSQFLIEN 129

Query: 86  APGLLG----MRNNNGETALFRSARYGKADIFNFLAGK-IADYDQPSKQPFLQRNDQSTV 140
                G    +++   +  L R+A  G   +   L G   +  +        Q     T 
Sbjct: 130 -----GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-------QDKQGWTP 177

Query: 141 LHMAVISQHFELALEIAKEYKYLIG-------EKDMDGMTALQL 177
           L  A+   H + A         L+          D  G  A  +
Sbjct: 178 LFHALAEGHGDAA-------VLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 62  GNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA 121
            N  LH     +    V  +LL   P LL  ++ +G   L  S  +   +I +FL  K+ 
Sbjct: 2   SNYPLHQACMENEFFKVQ-ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 122 DYDQPSKQPFLQRNDQSTVLHMAVISQHFELA-LEIAKEYKYLIGEKDMDGMTAL 175
           + +          +   T  H+A    + E+      +  K  + +    G+T L
Sbjct: 61  NVNLDDY----PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 33/162 (20%), Positives = 51/162 (31%), Gaps = 34/162 (20%)

Query: 26  TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
           T LH+A       +   L+                 ++ G T  H  A   R+      L
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAGASPMA--------LDRHGQTAAH-LACEHRSPTCLRAL 98

Query: 83  LRK-APGLLGM--RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQST 139
           L   APG L +  RN +G TAL  +      +    L  + AD D              +
Sbjct: 99  LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI------KSGRS 152

Query: 140 VLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
            L  AV +    +        + L+        +   G +AL
Sbjct: 153 PLIHAVENNSLSMV-------QLLLQHGANVNAQMYSGSSAL 187

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 56  TRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKAD 111
           TR ++ G+T LH  A     LP     L       G    + NN  +T L  +       
Sbjct: 3   TRADEDGDTPLHI-AVVQGNLPAV-HRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 112 IFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA---LEIAKEYKYLIGEKD 168
           +   L    A                 T  H+A   +        L+ A      +  ++
Sbjct: 61  VVRLLVTAGASPM-------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113

Query: 169 MDGMTAL 175
            DG+TAL
Sbjct: 114 YDGLTAL 120

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 22/158 (13%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T  H+A   +      + L +        +  +N  G T LH    +         LL +
Sbjct: 81  TAAHLACEHRSPTCL-RALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-QETVQLLLER 138

Query: 86  APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV 145
              +  +   +G + L  +       +   L    A+ +        Q    S+ LH A 
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-------QMYSGSSALHSAS 191

Query: 146 ISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
                 L        + L+        K+    T L +
Sbjct: 192 GRGLLPLV-------RTLVRSGADSSLKNCHNDTPLMV 222

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.9 bits (118), Expect = 4e-08
 Identities = 26/131 (19%), Positives = 37/131 (28%), Gaps = 30/131 (22%)

Query: 57  RQNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADI 112
                 +        +   L      + K     G         G   L  +A  G+ +I
Sbjct: 2   PLGSMCDKEFMWALKNGD-LDEVKDYVAK-----GEDVNRTLEGGRKPLHYAADCGQLEI 55

Query: 113 FNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------E 166
             FL  K AD + P            T L  AV   H    +      K L+        
Sbjct: 56  LEFLLLKGADINAPD-------KHHITPLLSAVYEGH----VSCV---KLLLSKGADKTV 101

Query: 167 KDMDGMTALQL 177
           K  DG+TA + 
Sbjct: 102 KGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 20/91 (21%)

Query: 91  GMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHF 150
           G   +  +     + + G  D       K  D ++               LH A      
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-------TLEGGRKPLHYAADCGQ- 52

Query: 151 ELALEIAKEYKYLIG------EKDMDGMTAL 175
              LEI    ++L+         D   +T L
Sbjct: 53  ---LEIL---EFLLLKGADINAPDKHHITPL 77

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.9 bits (123), Expect = 5e-08
 Identities = 38/169 (22%), Positives = 55/169 (32%), Gaps = 42/169 (24%)

Query: 26  TVLHMATYFKRDDLALKLL-----DEIPELYIHKMTRQNKAGNTVLHATATSSRALPVAD 80
           T LH A    R+D+  +LL     D            + K G T     A  + ++ +  
Sbjct: 41  TPLHNAVQMSREDIV-ELLLRHGAD------PVL---RKKNGATPFLL-AAIAGSVKLLK 89

Query: 81  KLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIAD---YDQPSKQPFLQ 133
             L K     G      +  G TA   +A YGK     FL  + A+     +  +     
Sbjct: 90  LFLSK-----GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 144

Query: 134 RNDQSTVLHMAVISQHFELALEIAKEYKYLIG-------EKDMDGMTAL 175
           R   +T L  A    H E+        K L+          D  G  AL
Sbjct: 145 RKGGATALMDAAEKGHVEVL-------KILLDEMGADVNACDNMGRNAL 186

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 35/172 (20%), Positives = 50/172 (29%), Gaps = 39/172 (22%)

Query: 26  TVLHMATYFKRDDLALKLLD-----EIPELYIHKMTRQNKAGNTVLHATATSSRALPVAD 80
           T    A  + +      L        +         R  K G T L   A     + V  
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD-AAEKGHVEVLK 165

Query: 81  KLLRKAPGLLG----MRNNNGETALFRSARYGKAD----IFNFLAGKIADYDQPSKQPFL 132
            LL +     G      +N G  AL  +           I + L    AD +        
Sbjct: 166 ILLDEM----GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV------- 214

Query: 133 QRNDQSTVLHMAVISQHFELALEIAKEYKYLIG-------EKDMDGMTALQL 177
           +     T L +AV  +H  L        + L+        + D DG TAL L
Sbjct: 215 RGERGKTPLILAVEKKHLGLV-------QRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 21/123 (17%)

Query: 59  NKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAG 118
               N +L   A  +  + +  +LL     +       G T L  + +  + DI   L  
Sbjct: 2   AVEDNHLLIK-AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 119 KIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGM 172
             AD          ++ + +T   +A I+   +L        K  +       E D  G 
Sbjct: 61  HGADPVL-------RKKNGATPFLLAAIAGSVKLL-------KLFLSKGADVNECDFYGF 106

Query: 173 TAL 175
           TA 
Sbjct: 107 TAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 33/174 (18%), Positives = 52/174 (29%), Gaps = 44/174 (25%)

Query: 24  DDTVLHMATYFKRDDLALKLLDEIPELYIHKM---TRQNKAGNTVLHATATSSRALPVAD 80
           D+ +L  A   +  DL  +LL+              ++ + G T LH  A       + +
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLE-------GGANVNFQEEEGGWTPLHN-AVQMSREDIVE 56

Query: 81  KLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRND 136
            LLR      G    +R  NG T    +A  G   +      K AD ++           
Sbjct: 57  LLLRH-----GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-------CDFY 104

Query: 137 QSTVLHMAVISQHFELALEIAK-------------EYKYLIGEKDMDGMTALQL 177
             T    A +       ++  K             + K         G TAL  
Sbjct: 105 GFTAFMEAAVYGK----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 37/158 (23%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR---ALPVADKL 82
           T L  A      ++   LLDE+    ++     +  G   L     SS       +   L
Sbjct: 150 TALMDAAEKGHVEVLKILLDEM-GADVNA---CDNMGRNALIHALLSSDDSDVEAITHLL 205

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKI-ADYDQPSKQPFLQRNDQ 137
           L       G    +R   G+T L  +       +   L  +   + +          +D 
Sbjct: 206 LDH-----GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND-------TDSDG 253

Query: 138 STVLHMAVISQHFELALEIAKEYKYLIG------EKDM 169
            T L +AV  +  ++A       + L          D+
Sbjct: 254 KTALLLAVELKLKKIA-------ELLCKRGASTDCGDL 284

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 29/123 (23%)

Query: 62  GNTVLHATATSSRALPVADKLLRKAPGLLGMR---NNNGETALFRSARYGKADIFNFLAG 118
           G   L     ++       + +       GMR   N      L  S+  G+ D+   +  
Sbjct: 5   GQVSLPPGKRTNL-RKTGSERIAH-----GMRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 119 KIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGM 172
           ++ D   P+       ++  T LH AV + H E+        K+L+         D DG 
Sbjct: 59  EVDDPSLPN-------DEGITALHNAVCAGHTEIV-------KFLVQFGVNVNAADSDGW 104

Query: 173 TAL 175
           T L
Sbjct: 105 TPL 107

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 21/93 (22%)

Query: 95  NNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELAL 154
             G+ +L    R       +                         +L  + +   F+L  
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--------FNPLPLALLLDSSLEGEFDLV- 53

Query: 155 EIAKEYKYLIG------EKDMDGMTALQLLSCK 181
                 + +I         + +G+TAL    C 
Sbjct: 54  ------QRIIYEVDDPSLPNDEGITALHNAVCA 80

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 32/166 (19%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
            +L  ++     DL  +++ E+ +         N  G T LH  A  +    +   L++ 
Sbjct: 39  ALLLDSSLEGEFDLVQRIIYEVDD--PSL---PNDEGITALHN-AVCAGHTEIVKFLVQF 92

Query: 86  APGLLGM----RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL 141
                G+     +++G T L  +A      +  FL    A     +          +   
Sbjct: 93  -----GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD----MQTAADK 143

Query: 142 HMAVISQHFELALEIAKEYKYLI------GEKDMDGMTALQLLSCK 181
              +   + + +       ++L       G  +   + AL     +
Sbjct: 144 CEEMEEGYTQCS-------QFLYGVQEKMGIMNKGVIYALWDYEPQ 182

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.2 bits (121), Expect = 8e-08
 Identities = 32/179 (17%), Positives = 47/179 (26%), Gaps = 40/179 (22%)

Query: 11  KISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHK--MTRQNKAGNTVLHA 68
           ++  + L    V D + +H A           L+            +        + LH 
Sbjct: 46  RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS-------QGWAVNIITADHVSPLHE 98

Query: 69  TATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYD 124
            A     L     LL+      G        +  T LF +   G  D  N L    A   
Sbjct: 99  -ACLGGHLSCVKILLKH-----GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152

Query: 125 QPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
                     +D ++ +H A    H E           LI        K     T L L
Sbjct: 153 --------PESDLASPIHEAARRGHVECV-------NSLIAYGGNIDHKISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 21/91 (23%)

Query: 93  RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFEL 152
           + ++  T L+ +    +      L    AD +Q           Q + LH  V +   EL
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADVNQG--------KGQDSPLHAVVRTASEEL 237

Query: 153 ALEIAKEYKYLIG------EKDMDGMTALQL 177
           A         L+        K+ +G   ++L
Sbjct: 238 A-------CLLMDFGADTQAKNAEGKRPVEL 261

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 29/129 (22%)

Query: 59  NKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFN 114
           +      +   AT         +L+       G      +    T L  +A   + D+  
Sbjct: 6   DDYSTWDIVK-ATQYGIYERCRELVEA-----GYDVRQPDKENVTLLHWAAINNRIDLVK 59

Query: 115 FLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKD 168
           +   K A  DQ         +  ST LH A    H    L +      L+         D
Sbjct: 60  YYISKGAIVDQLGG------DLNSTPLHWATRQGH----LSMV---VQLMKYGADPSLID 106

Query: 169 MDGMTALQL 177
            +G + + L
Sbjct: 107 GEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 30/131 (22%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYG-KADI 112
            +  G + +H  A       +   L+ K     G    M + NG T L  +A      D 
Sbjct: 105 IDGEGCSCIHL-AAQFGHTSIVAYLIAK-----GQDVDMMDQNGMTPLMWAAYRTHSVDP 158

Query: 113 FNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------E 166
              L       +   K        ++T LH AV++ +  +          L+        
Sbjct: 159 TRLLLTFNVSVNLGDK------YHKNTALHWAVLAGNTTVI-------SLLLEAGANVDA 205

Query: 167 KDMDGMTALQL 177
           +++ G +AL L
Sbjct: 206 QNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 40/164 (24%)

Query: 26  TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
           T+LH A    R DL    +     + +             +T LH  AT    L +  +L
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIVDQ-------LGGDLNSTPLHW-ATRQGHLSMVVQL 95

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS 138
           ++      G    + +  G + +  +A++G   I  +L  K  D D           +  
Sbjct: 96  MKY-----GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD-------QNGM 143

Query: 139 TVLHMAVISQHFELALEIAKEYKYLIG------EKD-MDGMTAL 175
           T L  A    H   +++     + L+         D     TAL
Sbjct: 144 TPLMWAAYRTH---SVDPT---RLLLTFNVSVNLGDKYHKNTAL 181

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 25/149 (16%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATATSSRALPVADKL 82
           + +H+A  F    +    L       I K   +   ++ G T L   A  + ++     L
Sbjct: 111 SCIHLAAQFGHTSIV-AYL-------IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162

Query: 83  LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLH 142
           L     +      +  TAL  +   G   + + L    A+ D  +           + L 
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN-------IKGESALD 215

Query: 143 MAVISQHFELALEIAKEYKYLIGEKDMDG 171
           +A   ++  +         +L   +   G
Sbjct: 216 LAKQRKNVWMI-------NHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 21/90 (23%)

Query: 93  RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFEL 152
            ++     + ++ +YG  +    L     D  QP         +  T+LH A I+   +L
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD-------KENVTLLHWAAINNRIDL 57

Query: 153 ALEIAKEYKYLIG------EKDMD-GMTAL 175
                   KY I       +   D   T L
Sbjct: 58  V-------KYYISKGAIVDQLGGDLNSTPL 80

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 34/191 (17%), Positives = 58/191 (30%), Gaps = 47/191 (24%)

Query: 26  TVLHMATYFKRD---DLALKLLDEIPELYIHK------MTRQNKAGNTVLHATATSSRAL 76
           T L  A    +D      + LL    +    K       T +   G++ LH  A   R+L
Sbjct: 45  TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI-AIEKRSL 103

Query: 77  PVADKLLRK------------APGLLGMRNNNGETALFRSARYGKADIFNFL---AGKIA 121
                L+                   G     GE  L  +A   + D+  +L     + A
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163

Query: 122 DYDQPSKQPFLQRNDQSTVLHMAVISQH------------FELALEIAK---EYKYLIGE 166
             +          +  +TVLH  V+               ++  L++         L   
Sbjct: 164 SLEA-------TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI 216

Query: 167 KDMDGMTALQL 177
            +  G+T L+L
Sbjct: 217 SNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR------ALPVA 79
             L +A   K+ D+   LL+   +     +   +  GNTVLHA    +       AL + 
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQ--PASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 80  --------DKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFL 116
                      L     L  + N+ G T L  +A+ GK +IF  +
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 34/166 (20%)

Query: 41  LKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRA--LPVADKLLRKAPGLLGM------ 92
           L+ L    +        +   G T L     + +         LL+              
Sbjct: 22  LEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81

Query: 93  ----RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS------TVLH 142
                   G +AL  +           L    AD    +   F Q++  +        L 
Sbjct: 82  QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141

Query: 143 MAVISQHFELALEIAKEYKYLIG---------EKDMDGMTALQLLS 179
           +A  ++ +++         YL+            D  G T L  L 
Sbjct: 142 LAACTKQWDVV-------TYLLENPHQPASLEATDSLGNTVLHALV 180

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.4 bits (114), Expect = 3e-07
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 41/165 (24%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIH--KMTRQNKAGNTVLHATATSSRALPVADKLL 83
             L  A      +    LL        +   +  QN  G T L      +    +A +LL
Sbjct: 7   NELASAAARGDLEQLTSLLQ-------NNVNVNAQNGFGRTALQVMKLGN--PEIARRLL 57

Query: 84  RKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQST 139
            +     G    +++  G   +  +AR G  D    L    AD +        + N+ + 
Sbjct: 58  LR-----GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-------EDNEGNL 105

Query: 140 VLHMAVISQHFELALEIAKEYKYLI-------GEKDMDGMTALQL 177
            LH+A    H    L +    ++L+       G ++  G TA  L
Sbjct: 106 PLHLAAKEGH----LRVV---EFLVKHTASNVGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 37.7 bits (89), Expect = 6e-04
 Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 21/88 (23%)

Query: 94  NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA 153
                  L  +A  G  +    L     + +        Q     T L +  +       
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNA-------QNGFGRTALQVMKLGN----- 49

Query: 154 LEIAKEYKYLIG------EKDMDGMTAL 175
            EIA   + L+        KD  G   +
Sbjct: 50  PEIA---RRLLLRGANPDLKDRTGFAVI 74

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 3e-07
 Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 44/176 (25%)

Query: 18  HVLTVHDD---TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATAT 71
           H    H       L  A    RDD    L+    ++          ++ +G T LH  A 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA--------EDASGWTPLHL-AA 55

Query: 72  SSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPS 127
            +  L + + LL+      G      ++ G T L  +A +G  +I   L    AD +   
Sbjct: 56  FNGHLEIVEVLLKN-----GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-- 108

Query: 128 KQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
                   +  T LH+A +  H    LEI +    L+        +D  G TA  +
Sbjct: 109 -----NDMEGHTPLHLAAMFGH----LEIVE---VLLKNGADVNAQDKFGKTAFDI 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.0 bits (113), Expect = 3e-07
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 30/129 (23%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
            N+ G T L      S    +A +LL++     G    +++ +G + +  +AR G  D  
Sbjct: 32  LNRFGKTALQVMMFGS--TAIALELLKQ-----GASPNVQDTSGTSPVHDAARTGFLDTL 84

Query: 114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLI-----GEKD 168
             L    AD + P           +  +H+AV   H      +     +L        +D
Sbjct: 85  KVLVEHGADVNVPD-------GTGALPIHLAVQEGH----TAVV---SFLAAESDLHRRD 130

Query: 169 MDGMTALQL 177
             G+T L+L
Sbjct: 131 ARGLTPLEL 139

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.8 bits (115), Expect = 3e-07
 Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 31/129 (24%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
           +      +L A A       V + L               +  G T L  +      +I 
Sbjct: 2   KTYEVGALLEA-ANQRDTKKVKEILQDT-----TYQVDEVDTEGNTPLNIAVHNNDIEIA 55

Query: 114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG-------E 166
             L  + AD +        Q +   +    A          EI     Y++        +
Sbjct: 56  KALIDRGADINL-------QNSISDSPYLYAGAQGR----TEIL---AYMLKHATPDLNK 101

Query: 167 KDMDGMTAL 175
            +  G  AL
Sbjct: 102 HNRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.4 bits (114), Expect = 4e-07
 Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 30/163 (18%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATATSSRALPVADKL 82
           T L++A +    ++A K L       I +   +  QN   ++         R   +   +
Sbjct: 41  TPLNIAVHNNDIEIA-KAL-------IDRGADINLQNSISDSPYLYAGAQGR-TEILAYM 91

Query: 83  LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGK-IADYDQPSKQPFLQRNDQSTVL 141
           L+ A   L   N  G  AL  +A  G  D    L      D D        Q +   T L
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-------QNDFGYTAL 144

Query: 142 HMAVISQHFELA-LEIAKEYKYLIG------EKDMDGMTALQL 177
             AV  +       +I    K L+        KD  G TA+  
Sbjct: 145 IEAVGLREGNQLYQDIV---KLLMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.7 bits (112), Expect = 8e-07
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 20/90 (22%)

Query: 92  MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFE 151
           M+       L  + +     +   L       D+          + +T L++AV +    
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDE-------VDTEGNTPLNIAVHNND-- 51

Query: 152 LALEIAKEYKYLIG------EKDMDGMTAL 175
             +EIA   K LI        ++    +  
Sbjct: 52  --IEIA---KALIDRGADINLQNSISDSPY 76

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 30/158 (18%), Positives = 43/158 (27%), Gaps = 30/158 (18%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
               +          +       ++             T    TA          +LL  
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADV--------VSEYETPWW-TAARKADEQALSQLLED 66

Query: 86  APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV 145
               +   + NG TAL   A  G       LA   AD D              T LHMA 
Sbjct: 67  RD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM------RGGLTALHMAA 118

Query: 146 ISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
                E+        + L+        +D  G+TAL+L
Sbjct: 119 GYVRPEVV-------EALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 22/87 (25%)

Query: 94  NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA 153
              G        + G +  +   +   AD            ++  T    A         
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----------SEYETPWWTAARKAD---- 56

Query: 154 LEIAKEYKYL-----IGEKDMDGMTAL 175
            +       L     +   D +G TAL
Sbjct: 57  EQAL---SQLLEDRDVDAVDENGRTAL 80

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 27/166 (16%), Positives = 49/166 (29%), Gaps = 42/166 (25%)

Query: 24  DDTVLHMATYFKRDDLALKLL----DEIPELYIHKMTRQNKAGNTVLHATATSSRALPVA 79
           D   +H        D   + L    + +         + ++ G T L   A++   +   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLV--------NKPDERGFTPLIW-ASAFGEIETV 52

Query: 80  DKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRN 135
             LL       G    +     E+AL  ++  G  DI   L  +  D +           
Sbjct: 53  RFLLEW-----GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI-------YDW 100

Query: 136 DQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
           +  T L  AV   H +         + L+        +   G T +
Sbjct: 101 NGGTPLLYAVRGNHVKCV-------EALLARGADLTTEADSGYTPM 139

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 30/126 (23%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
             K   + L   +T      +   LL +          + + NG T L  + R       
Sbjct: 65  LAKERESALSLASTGGY-TDIVGLLLER-----DVDINIYDWNGGTPLLYAVRGNHVKCV 118

Query: 114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EK 167
             L  + AD          + +   T + +AV   + ++        + +        + 
Sbjct: 119 EALLARGADLTT-------EADSGYTPMDLAVALGYRKVQ-------QVIENHILKLFQS 164

Query: 168 DMDGMT 173
           ++    
Sbjct: 165 NLVPAD 170

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.0 bits (113), Expect = 5e-07
 Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 38/166 (22%)

Query: 24  DDTVLHMATYFKRDDLALKLLDEIPELYIH--KMTRQNKAGNTVLHATATSSRALPVADK 81
            D  L  A      +   K L       +            +T LH  A  +R + V + 
Sbjct: 8   ADRQLLEAAKAGDVETV-KKL-----CTVQSVNCRDIEGRQSTPLHFAAGYNR-VSVVEY 60

Query: 82  LLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ 137
           LL+      G     ++  G   L  +  YG  ++   L    A  +            +
Sbjct: 61  LLQH-----GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-------LWK 108

Query: 138 STVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
            T LH A     +E+        K L+       +K+ DG T L L
Sbjct: 109 FTPLHEAAAKGKYEIC-------KLLLQHGADPTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 27/92 (29%)

Query: 94  NNNGETALFRSARYGKADIFNFL----AGKIADYDQPSKQPFLQRNDQSTVLHMAVISQH 149
           N+  +  L  +A+ G  +    L    +    D +            QST LH A     
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE----------GRQSTPLHFAAGYNR 54

Query: 150 FELALEIAKEYKYLIG------EKDMDGMTAL 175
               + +    +YL+        KD  G+  L
Sbjct: 55  ----VSVV---EYLLQHGADVHAKDKGGLVPL 79

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.0 bits (113), Expect = 6e-07
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 32/126 (25%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRK--APGLLGMRNNNGETALFRSARYGKADIFNF 115
            +K G  V            + D+         L   R++   T L  +   G  +  + 
Sbjct: 4   MDKNGEIVEK----------IKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDK 53

Query: 116 LAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKDM 169
           L       +        +  + ST L  AV +      L IA   + L+        KD 
Sbjct: 54  LVENFDKLED-------KDIEGSTALIWAVKNNR----LGIA---EKLLSKGSNVNTKDF 99

Query: 170 DGMTAL 175
            G T L
Sbjct: 100 SGKTPL 105

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 41/166 (24%)

Query: 23  HDDTVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVA 79
           ++ T L +A     ++   KL++   ++ +        ++  G+T L     ++R L +A
Sbjct: 34  YNRTPLMVACMLGMENAIDKLVENFDKLED--------KDIEGSTALIWAVKNNR-LGIA 84

Query: 80  DKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRN 135
           +KLL K     G     ++ +G+T L  S  +G +++  FL    A+ +        +  
Sbjct: 85  EKLLSK-----GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-------RNL 132

Query: 136 DQSTVLHMAVISQHFELALEIAKEYKYLI--G----EKDMDGMTAL 175
           +  T L +A          EI    K L+  G     +D+ G+TA 
Sbjct: 133 EGETPLIVASKYGR----SEIV---KKLLELGADISARDLTGLTAE 171

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.4 bits (109), Expect = 6e-07
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 20/88 (22%)

Query: 94  NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA 153
           + +G T L  +A+ G A+    L  K AD +        +  D +T LH+A  + H    
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-------RSKDGNTPLHLAAKNGH---- 54

Query: 154 LEIAKEYKYLIG------EKDMDGMTAL 175
            EI    K L+        +  DG T  
Sbjct: 55  AEIV---KLLLAKGADVNARSKDGNTPE 79

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 30/127 (23%)

Query: 59  NKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFN 114
           +K GNT LH  A  +       KLL K     G     R+ +G T L  +A+ G A+I  
Sbjct: 6   SKDGNTPLHN-AAKNGHAEEVKKLLSK-----GADVNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 115 FLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKD 168
            L  K AD +        +  D +T  H+A  + H E+        K L         + 
Sbjct: 60  LLLAKGADVNA-------RSKDGNTPEHLAKKNGHHEIV-------KLLDAKGADVNARS 105

Query: 169 MDGMTAL 175
                  
Sbjct: 106 WGSSHHH 112

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.8 bits (110), Expect = 6e-07
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 20/89 (22%)

Query: 93  RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFEL 152
           ++ NG T L  +AR G  ++   L    AD +        +  +  T LH+A  + H   
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-------KDKNGRTPLHLAARNGH--- 80

Query: 153 ALEIAKEYKYLIG------EKDMDGMTAL 175
            LE+    K L+        KD +G T L
Sbjct: 81  -LEVV---KLLLEAGADVNAKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.5 bits (104), Expect = 4e-06
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 20/86 (23%)

Query: 96  NGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALE 155
           NG T L  +AR G  ++   L    AD +        +  +  T LH+A  + H    LE
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-------KDKNGRTPLHLAARNGH----LE 49

Query: 156 IAKEYKYLIG------EKDMDGMTAL 175
           +    K L+        KD +G T L
Sbjct: 50  VV---KLLLEAGADVNAKDKNGRTPL 72

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 39/172 (22%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHA---TATSSRALPVADKL 82
             +  A      +  L+L ++  E       +++   + +L+             ++  L
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYE------DKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFN------FLAGKIADYDQPSKQPFL 132
           + K     G     R   G T  F   + G  DI            K AD     K    
Sbjct: 62  INK-----GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK---- 112

Query: 133 QRNDQSTVLHMAVISQHFELALEIAKEYKYLIGE-------KDMDGMTALQL 177
                  V+   + +   +   E+   YK +  +       KD  G+TAL+ 
Sbjct: 113 ---PYKIVVFKNIFNYFVDEN-EMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 23  HDDTVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATA-----TSSR 74
              T+         +D+      E+ ++++ K   +T   K    V+           + 
Sbjct: 74  EGTTLFFPLFQGGGNDITGTT--ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 75  ALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYD 124
            +P+   +  ++   L +++  G TAL    R  K      +   I  Y+
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 96  NGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALE 155
           +    +  +A  G  + F  L  K  +  +           +S +L+  + + + E   +
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKE--------SVLKSNILYDVLRNNNDEARYK 56

Query: 156 IAKEYKYLIG------EKDMDGMTALQLLSCK 181
           I+    +LI        +  +G T    L   
Sbjct: 57  ISM---FLINKGADIKSRTKEGTTLFFPLFQG 85

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 30/127 (23%)

Query: 59  NKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFN 114
           N  G T+LH  +     +P  + LL+      G    ++++ G T L  +  +G   +  
Sbjct: 7   NHRGETLLHIASIKGD-IPSVEYLLQN-----GSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 115 FLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKD 168
            L    A  +              + LH A  + H ++        K L+         +
Sbjct: 61  LLLQHKALVNTTG-------YQNDSPLHDAAKNGHVDIV-------KLLLSYGASRNAVN 106

Query: 169 MDGMTAL 175
           + G+  +
Sbjct: 107 IFGLRPV 113

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.9 bits (105), Expect = 3e-06
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 20/89 (22%)

Query: 93  RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFEL 152
            N+ GET L  ++  G      +L    +D +          +   T LH A    H   
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD-------HAGWTPLHEACNHGH--- 55

Query: 153 ALEIAKEYKYLIG------EKDMDGMTAL 175
            L++    + L+              + L
Sbjct: 56  -LKVV---ELLLQHKALVNTTGYQNDSPL 80

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 35/192 (18%), Positives = 52/192 (27%), Gaps = 48/192 (25%)

Query: 26  TVLHMATYFKRD---DLALKLL------DEIPELYIHKMTRQNKAGNTVLHATATSSRAL 76
           T L  A     +   D    LL      D + +      T     G T LH  A   R +
Sbjct: 56  TCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI-AIERRNM 114

Query: 77  PVADKLLRK-------------APGLLGMRNNNGETALFRSARYGKADIFNFL---AGKI 120
            +   L+                          GE  L  +A   +  I  FL   + + 
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP 174

Query: 121 ADYDQPSKQPFLQRNDQSTVLHMAVISQH------------FELALEIAK---EYKYLIG 165
           AD          + +  +TVLH  V                +   L +         L  
Sbjct: 175 ADISA-------RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 166 EKDMDGMTALQL 177
             +  G+T L L
Sbjct: 228 ITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 32/139 (23%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATA--------------T 71
             L +A    +  +   LL    +     ++ ++  GNTVLHA                +
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQP--ADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 72  SSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPF 131
               + +    L     L  + N  G T L  +A  GK  +  ++               
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI--------------- 252

Query: 132 LQRN-DQSTVLHMAVISQH 149
           LQR   +    H A    H
Sbjct: 253 LQREIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 31/171 (18%)

Query: 26  TVLHMATYFKRDDLALKLL----------DEIPELYIHKMTRQNKAGNTVLHATATSSRA 75
           T LH+A   +   L   LL                   K       G   L   A  +  
Sbjct: 103 TALHIAIERRNMTLV-TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSL-AACTNQ 160

Query: 76  LPVADKLLRKAPGL--LGMRNNNGETALFRSARYGK---------ADIFNFLAGKIADYD 124
           L +   LL+ +     +  R++ G T L                   ++N +    A   
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220

Query: 125 QPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTAL 175
              K   +      T L +A  S    +         Y++ ++++      
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVL-------AYIL-QREIHEPECR 263

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 27/188 (14%), Positives = 47/188 (25%), Gaps = 38/188 (20%)

Query: 23  HDDTVLHMATYFKRDDLALKLLDEIPELYIH---KMTRQNKAGNTVLHATATSSRA--LP 77
           +D   +  A           LL  +            +  + G T L     +       
Sbjct: 12  YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQND 71

Query: 78  VADKLLRKAPGLLGMR----------NNNGETALFRSARYGKADIFNFLAGKIADYDQPS 127
               LL  A     ++             G+TAL  +       +   L    AD    +
Sbjct: 72  TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 128 KQPFLQRNDQS-------TVLHMAVISQHFELALEIAKEYKYLIG---------EKDMDG 171
              F ++             L +A  +    +        K+L+           +D  G
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV-------KFLLQNSWQPADISARDSVG 184

Query: 172 MTALQLLS 179
            T L  L 
Sbjct: 185 NTVLHALV 192

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 36/162 (22%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
               +  +   +      + +  +  +     +   G   L A ++         +LL +
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKV-----KFDDGAVFLAACSSGD--TEEVLRLLER 62

Query: 86  APGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL 141
                G      N +G TAL ++      D+  FL    A+ +QP        N+    L
Sbjct: 63  -----GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-------NEGWIPL 110

Query: 142 HMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
           H A    + ++A       +YLI         + +G T L +
Sbjct: 111 HAAASCGYLDIA-------EYLISQGAHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 26/158 (16%), Positives = 42/158 (26%), Gaps = 33/158 (20%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T L +A     ++L    ++            Q                 L  A + L  
Sbjct: 141 TPLDIAEEEAMEELLQNEVNR-----------QGVDIEAARKEEERIM--LRDARQWLNS 187

Query: 86  APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV 145
                     +G TAL  +A  G  ++   L     D +        +  D  T LH A 
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-------KDYDGWTPLHAAA 240

Query: 146 ISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
                E         + L+         +  G TA  +
Sbjct: 241 HWGKEEAC-------RILVENLCDMEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 8e-06
 Identities = 31/159 (19%), Positives = 48/159 (30%), Gaps = 39/159 (24%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHK---MTRQNKAGNTVLHATATSSRALPVADKL 82
             LH A      D+A + L       I +   +   N  G+T L   A       +    
Sbjct: 108 IPLHAAASCGYLDIA-EYL-------ISQGAHVGAVNSEGDTPLDI-AEEEAMEELLQNE 158

Query: 83  LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLH 142
           + +       +  + E A     R    D   +L     +  + +           T LH
Sbjct: 159 VNR-------QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA-------KSGGTALH 204

Query: 143 MAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
           +A    + E+        K LI        KD DG T L
Sbjct: 205 VAAAKGYTEVL-------KLLIQARYDVNIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 93  RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFEL 152
            +N G   L  +A  G  DI  +L  + A             ++  T L +A      EL
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-------VNSEGDTPLDIAEEEAMEEL 154

Query: 153 ALEIAKEYKYLIGEKDMDGMTALQ 176
                   +  +  + +D   A +
Sbjct: 155 L-------QNEVNRQGVDIEAARK 171

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.2 bits (111), Expect = 9e-07
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 35/163 (21%)

Query: 23  HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
            +   +H              +++  E  I+     ++ G T L   A +   + V + L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ--ENVINH---TDEEGFTPLMW-AAAHGQIAVVEFL 55

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS 138
           L+      G    +     E+AL  +   G  DI   L     D ++          +  
Sbjct: 56  LQN-----GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE-------YDWNGG 103

Query: 139 TVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTAL 175
           T L  AV   H +         K L+        +   G  ++
Sbjct: 104 TPLLYAVHGNHVKCV-------KMLLESGADPTIETDSGYNSM 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 33/167 (19%), Positives = 48/167 (28%), Gaps = 46/167 (27%)

Query: 26  TVLHMATYFKRDDLALKLL-----DEIPELYIHKMTRQNKAGNTVLHATATSSRALPVAD 80
             L  A    +DD   ++L                   +  G + LH  A         +
Sbjct: 4   KKLLEAARAGQDDEV-RILMANGAP------FTT----DWLGTSPLHLAAQYGH-FSTTE 51

Query: 81  KLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRND 136
            LLR      G     R     T L  +A  G A+I   L    AD +        +   
Sbjct: 52  VLLRA-----GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-------KDML 99

Query: 137 QSTVLHMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
           + T LH A    H E+        + LI        +     TA  +
Sbjct: 100 KMTALHWATEHNHQEVV-------ELLIKYGADVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 21/86 (24%)

Query: 96  NGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALE 155
           +    L  +AR G+ D    L    A +              ++ LH+A    HF     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--------TDWLGTSPLHLAAQYGHFSTT-- 50

Query: 156 IAKEYKYLIG------EKDMDGMTAL 175
                + L+        +     T L
Sbjct: 51  -----EVLLRAGVSRDARTKVDRTPL 71

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 20/91 (21%)

Query: 93  RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFEL 152
           ++  G T L+ +  +G  +I   L    AD +              T LH+A    H   
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-------VDAIGFTPLHLAAFIGH--- 92

Query: 153 ALEIAKEYKYLIG------EKDMDGMTALQL 177
            LEIA   + L+        +D  G TA  +
Sbjct: 93  -LEIA---EVLLKHGADVNAQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 20/88 (22%)

Query: 94  NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA 153
            ++    L  +AR G+ D    L    AD +        +     T L++A    H E+ 
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNA-------KDEYGLTPLYLATAHGHLEIV 63

Query: 154 LEIAKEYKYLIG------EKDMDGMTAL 175
                  + L+         D  G T L
Sbjct: 64  -------EVLLKNGADVNAVDAIGFTPL 84

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 27/162 (16%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHK--MTRQNKAGNTVLHATATSSRALPVADKLL 83
            + ++A   K D+L  ++L         K   TR ++   T LH   ++     + + LL
Sbjct: 9   MICNLAYSGKLDELKERILA-------DKSLATRTDQDSRTALHWACSAGH-TEIVEFLL 60

Query: 84  RKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQST 139
           +      G     +++ G + L  +A  G  +I   L  K A  +           +  T
Sbjct: 61  QL-----GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-------VNQNGCT 108

Query: 140 VLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK 181
            LH A      E+A  +  E       KD    TA+   + K
Sbjct: 109 PLHYAASKNRHEIA-VMLLEGGANPDAKDHYDATAMHRAAAK 149

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 20/88 (22%)

Query: 94  NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA 153
             +       +      ++   +    +   +          D  T LH A  + H E+ 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATR-------TDQDSRTALHWACSAGHTEIV 56

Query: 154 LEIAKEYKYLIG------EKDMDGMTAL 175
                  ++L+       +KD  G + L
Sbjct: 57  -------EFLLQLGVPVNDKDDAGWSPL 77

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 30/173 (17%), Positives = 46/173 (26%), Gaps = 33/173 (19%)

Query: 14  DHALHVLTVHDD---TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATA 70
           +    + +           +          +       ++             T    TA
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV--------VSEYETPWW-TA 52

Query: 71  TSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQP 130
                     +LL      +   + NG TAL   A  G       LA   AD D      
Sbjct: 53  ARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM-- 108

Query: 131 FLQRNDQSTVLHMAVISQHFELALEIAKEYKYLI------GEKDMDGMTALQL 177
                   T LHMA      E+        + L+        +D  G+TAL+L
Sbjct: 109 ----RGGLTALHMAAGYVRPEVV-------EALVELGADIEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 25/172 (14%), Positives = 41/172 (23%), Gaps = 38/172 (22%)

Query: 26  TVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL 82
           T L        D     L +   ++         R  + G T LH  A   R   V + L
Sbjct: 79  TALLFVAGLGSDKCVRLLAEAGADLDH-------RDMRGGLTALHMAAGYVR-PEVVEAL 130

Query: 83  LRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFL------ 132
           +       G    + +  G TAL  +    K                      L      
Sbjct: 131 VEL-----GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185

Query: 133 ---------QRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTAL 175
                    +R     V ++       +    +   +      KD +    L
Sbjct: 186 YAEVDEIVEKRGKGKDVEYLVRWKDGGDCE-WVKGVHVAEDVAKDYE--DGL 234

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 26/184 (14%), Positives = 46/184 (25%), Gaps = 35/184 (19%)

Query: 1   NEKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK 60
           N  K  ++   +S        VH  +  + A       L   LL+           +   
Sbjct: 8   NTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN-------AGALKNLL 60

Query: 61  AGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFL 116
                LH  A +     +   LL       G      ++ G TAL+ +   G        
Sbjct: 61  ENEFPLHQ-AATLEDTKIVKILLFS-----GLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114

Query: 117 AGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG-----EKDMDG 171
             K        K          T  + AV+     +         Y +            
Sbjct: 115 VKKNWRLMFYGK------TGWKTSFYHAVMLNDVSIV-------SYFLSEIPSTFDLAIL 161

Query: 172 MTAL 175
           ++ +
Sbjct: 162 LSCI 165

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 17/153 (11%), Positives = 44/153 (28%), Gaps = 27/153 (17%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIH--KMTRQNKAG-NTVLHATATSSRALPVADKL 82
           T L+ A            +           ++    K G  T  +  A     + +    
Sbjct: 97  TALYYAVDSGNMQTVKLFVK-------KNWRLMFYGKTGWKTSFYH-AVMLNDVSIVSYF 148

Query: 83  LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLH 142
           L + P           + +  + + G  D+   L   +   +  +             + 
Sbjct: 149 LSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS------LLFIPDIK 200

Query: 143 MAVISQHFELALEIAKEYKYLIGEKDMDGMTAL 175
           +A+ ++  E+        + L  + D++  +A 
Sbjct: 201 LAIDNKDIEML-------QALF-KYDINIYSAN 225

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 34/162 (20%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T LH A       +  ++L       +     +   G T L   A       + + L+  
Sbjct: 60  TPLHAAVSADAQGVF-QILIRNRATDLDA---RMHDGTTPLI-LAARLAVEGMLEDLINS 114

Query: 86  APGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL 141
                       ++ G++AL  +A     D    L    A+ D        Q N + T L
Sbjct: 115 -----HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-------QNNREETPL 162

Query: 142 HMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
            +A     +E A       K L+         D        +
Sbjct: 163 FLAAREGSYETA-------KVLLDHFANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 37/132 (28%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
            ++ G T LH  A  SR    A +LL            +++N G T L  +       +F
Sbjct: 21  TDRTGETALHLAARYSR-SDAAKRLLEA-----SADANIQDNMGRTPLHAAVSADAQGVF 74

Query: 114 NFL----AGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG---- 165
             L    A  +              +D +T L +A       +        + LI     
Sbjct: 75  QILIRNRATDLDARM----------HDGTTPLILAARLAVEGML-------EDLINSHAD 117

Query: 166 --EKDMDGMTAL 175
               D  G +AL
Sbjct: 118 VNAVDDLGKSAL 129

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 41.6 bits (99), Expect = 5e-05
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 34/156 (21%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIH--KMTRQNKAGNTVLHATATSSRALPVADKLL 83
           T L +A     + +   L++           +   +  G + LH  A  +  +  A  LL
Sbjct: 94  TPLILAARLAVEGMLEDLIN-------SHADVNAVDDLGKSALHWAAAVNN-VDAAVVLL 145

Query: 84  RKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQST 139
           +      G    M+NN  ET LF +AR G  +    L    A+ D          +    
Sbjct: 146 KN-----GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-------TDHMDRL 193

Query: 140 VLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTAL 175
              +A    H ++        + L  E ++     L
Sbjct: 194 PRDIAQERMHHDIV-------RLLD-EYNLVRSPQL 221

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 24/190 (12%)

Query: 2   EKKVIEVCRKISDHALHVLTVHDD---TVLHMATYFKRDDLALKLLDEIPELYIHK---M 55
           +  + EV     +  L++    D+   T LH  T     +L         +  +      
Sbjct: 106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELV--------KHLVKHGSNR 157

Query: 56  TRQNKAGNTVLH--ATATSSRALPVADKLLRKAPGLLGMRNNNGETAL----FRSARYGK 109
              +  G + L     + ++      + LL      L + ++   T L      S   G 
Sbjct: 158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC 217

Query: 110 ADIFNFLAGKIADY-DQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK---EYKYLIG 165
           +    +    +  +  +   +P     ++          +  +  LE          ++ 
Sbjct: 218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

Query: 166 EKDMDGMTAL 175
            +D +G T L
Sbjct: 278 AQDSNGDTCL 287

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 31/143 (21%)

Query: 40  ALKLLDEIPELYIHKM----TRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLG---- 91
              LL E+ + + +         ++ GNT LH   + +  L +   L++      G    
Sbjct: 105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN-LELVKHLVKH-----GSNRL 158

Query: 92  MRNNNGETALFRSARYGK-------ADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMA 144
             +N GE+ L ++ +            + ++L   +   D          +   T+LH  
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED----------SMNRTILHHI 208

Query: 145 VISQHFELALEIAKEYKYLIGEK 167
           +I+         AK Y  ++   
Sbjct: 209 IITSGMTGCSAAAKYYLDILMGW 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 36/189 (19%), Positives = 52/189 (27%), Gaps = 42/189 (22%)

Query: 26  TVLHMATYFKRD---DLALKLLD------EIPELYIHKMTRQNKAGNTVLHATATSSRAL 76
           T L  A         D    LLD       + E            G T LH  A   R  
Sbjct: 48  TCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHI-AIERRCK 106

Query: 77  PVADKLLRK-------------APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADY 123
              + L+ K              P   G     GE  L  +A   +  I ++L       
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 124 DQPSKQPFLQRNDQSTVLHMAVISQH------------FELALEIAK---EYKYLIGEKD 168
               +    Q +  +TVLH  V                ++L L           L    +
Sbjct: 167 ADLRR----QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN 222

Query: 169 MDGMTALQL 177
            DG++ L +
Sbjct: 223 NDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATA--------TSSRALP 77
             L +A    +  +   L +   +     + RQ+  GNTVLHA           +     
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHK--QADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 78  VADKLLRK------APGLLGMRNNNGETALFRSARYGKADIFNFL 116
           + D LL K         L  + NN+G + L  +A+ GK  IF  +
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 30/153 (19%), Positives = 41/153 (26%), Gaps = 35/153 (22%)

Query: 54  KMTRQNKAGNTVLHATATSSRA--LPVADKLLRKAPGLLGM----------RNNNGETAL 101
           +  R+   G T L     +  A        LL  A     M              G+TAL
Sbjct: 38  EEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTAL 97

Query: 102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS-------TVLHMAVISQHFELAL 154
             +           L  K AD    ++  F Q  D+          L +A  +       
Sbjct: 98  HIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ----P 153

Query: 155 EIAKEYKYLIG---------EKDMDGMTALQLL 178
            I     YL            +D  G T L  L
Sbjct: 154 HIVH---YLTENGHKQADLRRQDSRGNTVLHAL 183

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 6e-06
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 20/86 (23%)

Query: 96  NGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALE 155
           NG T L  +AR G  ++   L    AD +        +  +  T LH+A  + H    LE
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-------KDKNGRTPLHLAARNGH----LE 49

Query: 156 IAKEYKYLIG------EKDMDGMTAL 175
           +    K L+        KD +G T L
Sbjct: 50  VV---KLLLEAGADVNAKDKNGRTPL 72

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 12/121 (9%)

Query: 57  RQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARY--GKADIFN 114
             +  G T LH  A S     +   L++    +     ++G TA  +   Y  G AD   
Sbjct: 82  SPDSHGWTPLHC-AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140

Query: 115 FLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTA 174
           +LA                 +     L         EL+    +     +  +D    T 
Sbjct: 141 YLADVEQSMGL-------MNSGAVYALWDYSAEFGDELSFREGESVT--VLRRDGPEETD 191

Query: 175 L 175
            
Sbjct: 192 W 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 31/137 (22%)

Query: 52  IHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARY 107
             K  R       +L   A  +  L V  + +++            N  G TAL  +   
Sbjct: 11  PRKARRARLNPLVLLLD-AALTGELEVVQQAVKE-----MNDPSQPNEEGITALHNAICG 64

Query: 108 GKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG-- 165
               I +FL    A+ + P        +   T LH A       +          L+   
Sbjct: 65  ANYSIVDFLITAGANVNSPD-------SHGWTPLHCAASCNDTVIC-------MALVQHG 110

Query: 166 ----EKDM-DGMTALQL 177
                  + DG TA + 
Sbjct: 111 AAIFATTLSDGATAFEK 127

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 34/162 (20%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
             +               LD       + + + +  G + LH      R   V + L+ +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTE----NDLNQGDDHGFSPLHWACREGR-SAVVEMLIMR 61

Query: 86  APGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL 141
                G    + N   +T L  +A +G  DI   L    AD +  +          +  L
Sbjct: 62  -----GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN-------EHGNVPL 109

Query: 142 HMAVISQHFELALEIAKEYKYLIG------EKDMDGMTALQL 177
           H A          ++A   + L+         +  G   +  
Sbjct: 110 HYACFWGQ----DQVA---EDLVANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.9 bits (97), Expect = 8e-05
 Identities = 12/92 (13%), Positives = 20/92 (21%), Gaps = 27/92 (29%)

Query: 94  NNNGETALFRSARYGKADIFNFL----AGKIADYDQPSKQPFLQRNDQSTVLHMAVISQH 149
           +      +F   R G A             +   D          +   + LH A     
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD----------DHGFSPLHWACREGR 51

Query: 150 FELALEIAKEYKYLIG------EKDMDGMTAL 175
                 +    + LI         +    T L
Sbjct: 52  ----SAVV---EMLIMRGARINVMNRGDDTPL 76

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 24/149 (16%), Positives = 38/149 (25%), Gaps = 35/149 (23%)

Query: 23  HDDTVLHMATYFKRDDLALKLLD---EIPELYIHKMTRQNKAGNTVLHATATSSRALPVA 79
           H  + LH A    R  +   L+     I           N+  +T LH  A S     + 
Sbjct: 38  HGFSPLHWACREGRSAVVEMLIMRGARINV--------MNRGDDTPLHL-AASHGHRDIV 88

Query: 80  DKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRN 135
            KLL+             N +G   L  +  +G+  +   L    A              
Sbjct: 89  QKLLQY-----KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-------CNK 136

Query: 136 DQSTVLHMAVISQHFELALEIAKEYKYLI 164
                +  A       L        +   
Sbjct: 137 YGEMPVDKAKAPLRELLR-------ERAE 158

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 20/92 (21%)

Query: 94  NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA 153
            ++    L  +AR G+ D    L    AD          +  + ST LH+A  + H    
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAA-------KDKNGSTPLHLAARNGH---- 69

Query: 154 LEIAKEYKYLI------GEKDMDGMTALQLLS 179
           LE+    K L+        +D  G TA  +  
Sbjct: 70  LEVV---KLLLEAGADVXAQDKFGKTAFDISI 98

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 30/129 (23%)

Query: 59  NKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIFN 114
            +     L   A   R +     LL       G      N+ G   +      G A +  
Sbjct: 9   MEPSADWLATAAARGR-VEEVRALLEA-----GANPNAPNSYGRRPIQ-VMMMGSARVAE 61

Query: 115 FLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIG------EKD 168
            L    A+ +             +  +H A         L+       L         +D
Sbjct: 62  LLLLHGAEPNCADP------ATLTRPVHDAAREGF----LDTLV---VLHRAGARLDVRD 108

Query: 169 MDGMTALQL 177
             G   + L
Sbjct: 109 AWGRLPVDL 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 48/194 (24%)

Query: 23  HDDTVLHMATYFKRDDLALKLLD--EIPELYIHKMTRQ---NKAGNTVLHATATSSRALP 77
           + D +      F  +       D  ++ +     M +     +  + ++ +    S  L 
Sbjct: 18  YKDILSVFEDAFVDN------FDCKDVQD-----MPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 78  VADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA-DYDQPSKQPFL---Q 133
           +   LL K            E  + +         + FL   I  +  QPS    +   Q
Sbjct: 67  LFWTLLSK-----------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 134 R----NDQSTVLHMAV--ISQHFEL--ALEIAKEYKYLIGEKDMDGM-----TALQLLSC 180
           R    ND        V  +  + +L  AL   +  K ++    +DG+     T + L  C
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVC 171

Query: 181 KPEAFKLKQERGFF 194
                + K +   F
Sbjct: 172 LSYKVQCKMDFKIF 185

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 32/131 (24%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLG----MRNNNGETALFRSARYGKADIF 113
              + +  L   A   + +    +LL       G      N  G   +      G A + 
Sbjct: 8   LGGSSDAGLATAAARGQ-VETVRQLLEA-----GADPNALNRFGRRPIQ-VMMMGSAQVA 60

Query: 114 NFLAGKIADYDQPSKQPFLQRNDQSTV-LHMAVISQHFELALEIAKEYKYLIG------E 166
             L    A+ +              T  +H A         L+       L         
Sbjct: 61  ELLLLHGAEPNC-------ADPATLTRPVHDAAREGF----LDTLV---VLHRAGARLDV 106

Query: 167 KDMDGMTALQL 177
            D  G   + L
Sbjct: 107 CDAWGRLPVDL 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.98
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=219.39  Aligned_cols=170  Identities=21%  Similarity=0.202  Sum_probs=149.2

Q ss_pred             HHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      ..+++.|++.|+++  .+.+|.||||+|+..|+.+++++|++.|++     ++..+..|.||+++|+..++ .+++++|+
T Consensus        66 ~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-----~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll  139 (269)
T 4b93_B           66 QKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-----AGARNADQAVPLHLACQQGH-FQVVKCLL  139 (269)
T ss_dssp             ---------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-----cCccCCCCCCccccccccCh-HHHHHHHH
Confidence            35678899999876  477899999999999999999999997776     78899999999999999999 89999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      +.++ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|+||||+|+..|+.+++++|++ .|++
T Consensus       140 ~~g~-~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~-------~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad  210 (269)
T 4b93_B          140 DSNA-KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA-------SNNKGNTALHEAVIEKHVFVVELLLL-HGAS  210 (269)
T ss_dssp             HTTC-CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC-------BCTTSCBHHHHHHHTTCHHHHHHHHH-TTCC
T ss_pred             HCCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc-------cccCCCcHHHHHHHcCCHHHHHHHHH-CCCC
Confidence            9998 8999999999999999999999999999999999886       68999999999999999999999999 6999


Q ss_pred             hcccCCCCCCHhHHhccCCcchhhhhh
Q 037875          164 IGEKDMDGMTALQLLSCKPEAFKLKQE  190 (204)
Q Consensus       164 ~~~~~~~g~t~l~~a~~~~~~~~~~~~  190 (204)
                      ++.+|..|.|||++|+.++++.+++..
T Consensus       211 ~~~~d~~G~TpL~~A~~~~~i~~lL~~  237 (269)
T 4b93_B          211 VQVLNKRQRTAVDCAEQNSKIMELLQV  237 (269)
T ss_dssp             SCCCCTTSCCSGGGSCTTCHHHHHTTC
T ss_pred             CCCcCCCCCCHHHHHHhCCcHHHHHHH
Confidence            999999999999999988877665433

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.6e-34  Score=200.31  Aligned_cols=154  Identities=25%  Similarity=0.307  Sum_probs=139.7

Q ss_pred             hHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 037875           26 TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSA  105 (204)
Q Consensus        26 ~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  105 (204)
                      +.|+.||..|+.++|+.|++.|++     +|.++..|.||||+|+..++ .+++++|+..++ +++.++..|.||||+|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-----vn~~d~~g~t~l~~a~~~~~-~~~~~~ll~~ga-d~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-----VNASDSDGRTPLHHAAENGH-KEVVKLLISKGA-DVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcCC-HHHHHHHHhccc-chhhhccCCCCHHHHHH
Confidence            469999999999999999997766     88999999999999999999 899999999998 89999999999999999


Q ss_pred             HcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCc
Q 037875          106 RYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPE  183 (204)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~  183 (204)
                      ..|+.+++++|+++|++++.       ++..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+.  +.+
T Consensus        79 ~~g~~~~v~~Ll~~gadvn~-------~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~  150 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGADVNA-------KDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEE  150 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHCcCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHH
Confidence            99999999999999998887       68899999999999999999999999 699999999999999999985  457


Q ss_pred             chhhhhhccch
Q 037875          184 AFKLKQERGFF  194 (204)
Q Consensus       184 ~~~~~~~~g~~  194 (204)
                      +.+++++.|+.
T Consensus       151 iv~~Ll~~GA~  161 (169)
T 4gpm_A          151 VVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHTC---
T ss_pred             HHHHHHHCCCC
Confidence            88888888864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.9e-33  Score=192.45  Aligned_cols=148  Identities=20%  Similarity=0.251  Sum_probs=132.4

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      -+++++.|+++|++++  +..|.||||+|+..++.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|
T Consensus        16 ~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-----~~~~d~~g~TpLh~A~~~g~-~~~v~~L   89 (169)
T 4gpm_A           16 NKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-----VNAKDSDGRTPLHHAAENGH-KEVVKLL   89 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-----hhhhccCCCCHHHHHHHcCC-HHHHHHH
Confidence            4689999999998764  77899999999999999999999997776     88999999999999999999 9999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.|+ +++.++..|+||||+|+..|+.+++++|+++|++++.       ++..|+||||+|+..|+.+++++|++ .|+
T Consensus        90 l~~ga-dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-------~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA  160 (169)
T 4gpm_A           90 ISKGA-DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-------SDSDGRTPLDLAREHGNEEVVKLLEK-QGG  160 (169)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHT-C--
T ss_pred             HHCcC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-------cCCCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence            99998 8999999999999999999999999999999999887       68999999999999999999999998 699


Q ss_pred             hhccc
Q 037875          163 LIGEK  167 (204)
Q Consensus       163 ~~~~~  167 (204)
                      +++..
T Consensus       161 ~ie~~  165 (169)
T 4gpm_A          161 WLEHH  165 (169)
T ss_dssp             -----
T ss_pred             CcCCC
Confidence            98764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.3e-33  Score=205.77  Aligned_cols=179  Identities=22%  Similarity=0.221  Sum_probs=132.8

Q ss_pred             HHHHHHHHhhhcccccc---ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHH
Q 037875            4 KVIEVCRKISDHALHVL---TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVAD   80 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~---~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~   80 (204)
                      ...+++++|+++|.++.   +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .++++
T Consensus        34 ~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~  107 (253)
T 1yyh_A           34 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADA-QGVFQ  107 (253)
T ss_dssp             ------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTC-HHHHH
T ss_pred             CChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHH
Confidence            46788888998887763   56789999999999999999999997665     77788888888888888888 88888


Q ss_pred             HHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHh
Q 037875           81 KLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEY  160 (204)
Q Consensus        81 ~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  160 (204)
                      +|++.+..+++..+..|.||||+|+..|+.+++++|++.|++++.       ++..|+||||+|+..|+.+++++|++ .
T Consensus       108 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~d~~g~t~L~~A~~~~~~~~v~~Ll~-~  179 (253)
T 1yyh_A          108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-------VDDLGKSALHWAAAVNNVDAAVVLLK-N  179 (253)
T ss_dssp             HHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC-------BCTTSCBHHHHHHHHTCHHHHHHHHH-T
T ss_pred             HHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHH-c
Confidence            888887667777888888888888888888888888888887776       57778888888888888888888887 5


Q ss_pred             chhhcccCCCCCCHhHHhc--cCCcchhhhhhccchhh
Q 037875          161 KYLIGEKDMDGMTALQLLS--CKPEAFKLKQERGFFKK  196 (204)
Q Consensus       161 g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~~  196 (204)
                      |++++.++..|.||||+|+  .+.++.+.+++.|....
T Consensus       180 ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            8888888888888888887  44567777777776543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=7.6e-33  Score=195.77  Aligned_cols=165  Identities=22%  Similarity=0.252  Sum_probs=148.7

Q ss_pred             hhccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccc
Q 037875           13 SDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGM   92 (204)
Q Consensus        13 ~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~   92 (204)
                      ++...+..+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|++.++ +++.
T Consensus        24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~   96 (192)
T 2rfm_A           24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-----LEDKDIEGSTALIWAVKNNR-LGIAEKLLSKGS-NVNT   96 (192)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHTC-CTTC
T ss_pred             hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-----cccccccCccHHHHHHHcCC-HHHHHHHHHCCC-CCCC
Confidence            3334566788999999999999999999999996655     88899999999999999999 999999999998 8999


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCC
Q 037875           93 RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGM  172 (204)
Q Consensus        93 ~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~  172 (204)
                      .+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus        97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~  168 (192)
T 2rfm_A           97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-------RNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGL  168 (192)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-------CCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSC
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCC
Confidence            999999999999999999999999999998876       58899999999999999999999999 6999999999999


Q ss_pred             CHhHHhccC--Ccchhhhhhcc
Q 037875          173 TALQLLSCK--PEAFKLKQERG  192 (204)
Q Consensus       173 t~l~~a~~~--~~~~~~~~~~g  192 (204)
                      ||+++|+..  .++.+.+++.|
T Consensus       169 t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          169 TAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHhCcHHHHHHHHhcc
Confidence            999999854  46666666544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.5e-33  Score=206.00  Aligned_cols=178  Identities=21%  Similarity=0.174  Sum_probs=156.6

Q ss_pred             HHHHHHHhhhcccc-----ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHH
Q 037875            5 VIEVCRKISDHALH-----VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVA   79 (204)
Q Consensus         5 ~~~~~~~l~~~~~~-----~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~   79 (204)
                      ..+++++|+++|.+     ..+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++
T Consensus        21 ~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~tpL~~A~~~~~-~~~v   94 (282)
T 1oy3_D           21 HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-----VLVAERGGHTALHLACRVRA-HTCA   94 (282)
T ss_dssp             CHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SSCCCTTSCCHHHHHTTTTC-HHHH
T ss_pred             CHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCC-cchh
Confidence            46789999998865     4567899999999999999999999997766     78899999999999999999 8999


Q ss_pred             HHHHhhCCC----------------------------------------------ccccccCCCCcHHHHHHHcCCHHHH
Q 037875           80 DKLLRKAPG----------------------------------------------LLGMRNNNGETALFRSARYGKADIF  113 (204)
Q Consensus        80 ~~Ll~~~~~----------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~  113 (204)
                      ++|++.++.                                              +++..+..|.||||+|+..|+.+++
T Consensus        95 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  174 (282)
T 1oy3_D           95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV  174 (282)
T ss_dssp             HHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHH
Confidence            999987652                                              2566788899999999999999999


Q ss_pred             HHHHhcccCCCCCCCCccccC-CCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhh
Q 037875          114 NFLAGKIADYDQPSKQPFLQR-NDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQE  190 (204)
Q Consensus       114 ~~L~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~  190 (204)
                      ++|+++|++++..       + ..|+||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..  .++.+.+++
T Consensus       175 ~~Ll~~g~~~~~~-------~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  246 (282)
T 1oy3_D          175 RLLRDAGADLNKP-------EPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (282)
T ss_dssp             HHHHHHTCCTTCC-------CTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCC-------CCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCcHHHHHHHH
Confidence            9999999998873       4 459999999999999999999999 6999999999999999999854  578888888


Q ss_pred             ccchhh
Q 037875          191 RGFFKK  196 (204)
Q Consensus       191 ~g~~~~  196 (204)
                      .|+...
T Consensus       247 ~ga~~~  252 (282)
T 1oy3_D          247 HGAPEP  252 (282)
T ss_dssp             TTCCCC
T ss_pred             cCCCcC
Confidence            887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.7e-32  Score=197.01  Aligned_cols=175  Identities=16%  Similarity=0.125  Sum_probs=116.4

Q ss_pred             HHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      .+++++|+++|.++  .+..|.||||+|+..|+.+++++|++.++.    .++..+..|.||||+|+..++ .+++++|+
T Consensus        38 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll  112 (223)
T 2f8y_A           38 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT----DLDARMHDGTTPLILAARLAV-EGMLEDLI  112 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS----CTTCCCTTCCCHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCCcHHHHHHHhCc-HHHHHHHH
Confidence            45666666666554  345566677777766666677766665442    255666667777777777776 67777777


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      +.+. +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|++
T Consensus       113 ~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~  183 (223)
T 2f8y_A          113 NSHA-DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-------QNNREETPLFLAAREGSYETAKVLLD-HFAN  183 (223)
T ss_dssp             HTTC-CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTCCCHHHHHHHHTCHHHHHHHHH-TTCC
T ss_pred             HcCC-CCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCcCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            7665 5666666677777777777777777777777666555       46667777777777777777777776 4777


Q ss_pred             hcccCCCCCCHhHHhccC--Ccchhhhhhccch
Q 037875          164 IGEKDMDGMTALQLLSCK--PEAFKLKQERGFF  194 (204)
Q Consensus       164 ~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~  194 (204)
                      ++.++..|.||+++|+..  .++.+.+++.|+.
T Consensus       184 ~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          184 RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             CccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            777777777777777633  3566666666654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.7e-32  Score=198.22  Aligned_cols=181  Identities=22%  Similarity=0.272  Sum_probs=157.7

Q ss_pred             HHHHHHHhhhc-cccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDH-ALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~-~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      ..+++++|++. |.++  .+..|.||||+|+..|+.+++++|++.|++......+..+..|.||||+|+..++ .+++++
T Consensus        15 ~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~   93 (232)
T 2rfa_A           15 DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQN-VNLVRA   93 (232)
T ss_dssp             CHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTC-HHHHHH
T ss_pred             CHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCC-HHHHHH
Confidence            46789999987 7665  4778999999999999999999999988874333346778899999999999999 999999


Q ss_pred             HHhhCCCccccccC-------------CCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhC
Q 037875           82 LLRKAPGLLGMRNN-------------NGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQ  148 (204)
Q Consensus        82 Ll~~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~  148 (204)
                      |++.++ +++..+.             .|.||||+|+..|+.+++++|+++|++++.       +|..|+||||+|+..+
T Consensus        94 Ll~~g~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~d~~g~t~L~~A~~~~  165 (232)
T 2rfa_A           94 LLARGA-SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA-------QDSLGNTVLHILILQP  165 (232)
T ss_dssp             HHHTTC-CTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHTCS
T ss_pred             HHhCCC-CCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHcC
Confidence            999987 6776654             799999999999999999999999999887       6899999999999999


Q ss_pred             CHHHH----HHHHHHhchhh------cccCCCCCCHhHHhc--cCCcchhhhhhccchh
Q 037875          149 HFELA----LEIAKEYKYLI------GEKDMDGMTALQLLS--CKPEAFKLKQERGFFK  195 (204)
Q Consensus       149 ~~~~~----~~Ll~~~g~~~------~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~  195 (204)
                      +.+++    ++|++ .|++.      +.+|..|.|||++|+  .+.++++.+++.|...
T Consensus       166 ~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          166 NKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             CHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99988    88888 69888      689999999999998  4567888888877544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2e-32  Score=198.72  Aligned_cols=174  Identities=21%  Similarity=0.192  Sum_probs=111.9

Q ss_pred             HHHHHHhhhccc---cccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            6 IEVCRKISDHAL---HVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         6 ~~~~~~l~~~~~---~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ++.++.+++.+.   +..+..|.||||+|+..|+.+++++|++.|.+     ++..+..|.||||+|+..++ .+++++|
T Consensus        19 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~L   92 (231)
T 3aji_A           19 LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----VNDKDDAGWSPLHIAASAGX-DEIVKAL   92 (231)
T ss_dssp             HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHHTC-HHHHHHH
T ss_pred             HHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-----CCCcCCCCCCHHHHHHHcCH-HHHHHHH
Confidence            455666665543   23455667777777777777777777775544     56666667777777777766 6677777


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.+. +++..+..|.||||+|+..++.+++++|++.|++++.       ++..|.||||+|+..|+.+++++|++ .|+
T Consensus        93 l~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~  163 (231)
T 3aji_A           93 LVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-------KDHYDATAMHRAAAKGNLKMVHILLF-YKA  163 (231)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHHTCHHHHHHHHH-TTC
T ss_pred             HHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCCcHHHHHHHcCCHHHHHHHHh-cCC
Confidence            76665 5666666667777777777777777777766666554       35566666666666666666666666 466


Q ss_pred             hhcccCCCCCCHhHHhccC--Ccchhhhhhccch
Q 037875          163 LIGEKDMDGMTALQLLSCK--PEAFKLKQERGFF  194 (204)
Q Consensus       163 ~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~  194 (204)
                      +++.++..|.||||+|+..  .++.+.+++.|..
T Consensus       164 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  197 (231)
T 3aji_A          164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS  197 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            6666666666666666533  3555555555544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.6e-32  Score=193.38  Aligned_cols=173  Identities=20%  Similarity=0.173  Sum_probs=153.2

Q ss_pred             HHHHHHhhhccc-c--ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            6 IEVCRKISDHAL-H--VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         6 ~~~~~~l~~~~~-~--~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      .+.++.++..+. +  ..+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|
T Consensus        18 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~-~~~~~~L   91 (201)
T 3hra_A           18 TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-----INLQNSISDSPYLYAGAQGR-TEILAYM   91 (201)
T ss_dssp             HHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHHHH
Confidence            567777777764 4  4577899999999999999999999997766     88899999999999999999 9999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcc-cCCCCCCCCccccCCCCccHHHHHHHhCC-----HHHHHHH
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI-ADYDQPSKQPFLQRNDQSTVLHMAVISQH-----FELALEI  156 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~L  156 (204)
                      ++.+..+++..+..|.||||+|+..|+.+++++|++.| ++++.       ++..|+||||+|+..+.     .+++++|
T Consensus        92 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------~~~~g~t~L~~A~~~~~~~~~~~~~v~~L  164 (201)
T 3hra_A           92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-------QNDFGYTALIEAVGLREGNQLYQDIVKLL  164 (201)
T ss_dssp             HHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC-------CCTTSCCHHHHHHHSSCCSHHHHHHHHHH
T ss_pred             HhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC-------CCCCCCCHHHHHHHhccchhhHHHHHHHH
Confidence            97666688899999999999999999999999999998 77776       58899999999999998     9999999


Q ss_pred             HHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhcc
Q 037875          157 AKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERG  192 (204)
Q Consensus       157 l~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g  192 (204)
                      ++ .|++++.+|..|.|||++|+.  +.++.+.+++.|
T Consensus       165 l~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          165 ME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99 699999999999999999984  457777776654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=8.9e-33  Score=199.52  Aligned_cols=179  Identities=22%  Similarity=0.225  Sum_probs=160.3

Q ss_pred             HHHHHHHhhhcccccc---ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDHALHVL---TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~---~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      .++++++|+++|.++.   +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++
T Consensus         3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~   76 (223)
T 2f8y_A            3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADA-QGVFQI   76 (223)
T ss_dssp             --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHH
T ss_pred             cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCC-HHHHHH
Confidence            3567788999998764   56899999999999999999999997766     78899999999999999999 999999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc
Q 037875           82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK  161 (204)
Q Consensus        82 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g  161 (204)
                      |++.++.+++..+..|.||||+|+..++.+++++|++.|++++.       ++..|.||||+|+..|+.+++++|++ .|
T Consensus        77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g  148 (223)
T 2f8y_A           77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-------VDDLGKSALHWAAAVNNVDAAVVLLK-NG  148 (223)
T ss_dssp             HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------BCTTSCBHHHHHHHTTCHHHHHHHHH-TT
T ss_pred             HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-------cCCCCCcHHHHHHHcCCHHHHHHHHH-cC
Confidence            99998767888899999999999999999999999999998876       58899999999999999999999999 59


Q ss_pred             hhhcccCCCCCCHhHHhcc--CCcchhhhhhccchhhh
Q 037875          162 YLIGEKDMDGMTALQLLSC--KPEAFKLKQERGFFKKL  197 (204)
Q Consensus       162 ~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~~~~~  197 (204)
                      ++++.++..|.||||+|+.  +.++.+.+++.|.....
T Consensus       149 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          149 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            9999999999999999984  55788888888765543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.9e-32  Score=205.06  Aligned_cols=177  Identities=12%  Similarity=0.131  Sum_probs=150.6

Q ss_pred             HHHHHHHhhhccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHh
Q 037875            5 VIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR   84 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~   84 (204)
                      ..+++++|+++|.+++..+|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|++
T Consensus        43 ~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~  116 (285)
T 3kea_A           43 NVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLD-----DSQFDDKGNTALYYAVDSGN-MQTVKLFVK  116 (285)
T ss_dssp             CHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHHH
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCcHHHHHHHcCC-HHHHHHHHh
Confidence            467888888888888777888888888888888888888886665     77888889999999999998 899999999


Q ss_pred             hCCCccccccCCC-CcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875           85 KAPGLLGMRNNNG-ETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus        85 ~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      .++ +++..+..| .||||+|+..|+.+++++|+++|++...        ...|.||||+|+..|+.+++++|++ .|++
T Consensus       117 ~ga-~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad  186 (285)
T 3kea_A          117 KNW-RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--------LAILLSCIHITIKNGHVDMMILLLD-YMTS  186 (285)
T ss_dssp             HCG-GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--------CSTHHHHHHHHHHTTCHHHHHHHHH-HHHH
T ss_pred             cCC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--------ccCCccHHHHHHHcChHHHHHHHHH-cCCC
Confidence            887 788888888 7999999999999999999998876532        2379999999999999999999999 5999


Q ss_pred             hcccCCCCCCH-hHHhc--cCCcchhhhhhccchhhh
Q 037875          164 IGEKDMDGMTA-LQLLS--CKPEAFKLKQERGFFKKL  197 (204)
Q Consensus       164 ~~~~~~~g~t~-l~~a~--~~~~~~~~~~~~g~~~~~  197 (204)
                      ++.++..|.|| ||+|+  .+.++.+.+++.|+....
T Consensus       187 ~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999998 99998  455788888888876543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.8e-32  Score=200.09  Aligned_cols=173  Identities=16%  Similarity=0.105  Sum_probs=155.7

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|+++|.+++  +..|.||||+|+..|+.+++++|++.++.    .++..+..|.||||+|+..++ .+++++|
T Consensus        69 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~~g~t~L~~A~~~~~-~~~v~~L  143 (253)
T 1yyh_A           69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT----DLDARMHDGTTPLILAARLAV-EGMLEDL  143 (253)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS----CTTCCCTTCCCHHHHHHHHTC-SSHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CccccCCCCCcHHHHHHHcCh-HHHHHHH
Confidence            4689999999998764  67899999999999999999999997652    378889999999999999999 8999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.++ +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|+
T Consensus       144 l~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga  214 (253)
T 1yyh_A          144 INSHA-DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-------QNNREETPLFLAAREGSYETAKVLLD-HFA  214 (253)
T ss_dssp             HHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHHTCHHHHHHHHH-TTC
T ss_pred             HHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCCCHHHHHHHCCCHHHHHHHHH-cCC
Confidence            99998 8999999999999999999999999999999999886       58899999999999999999999999 699


Q ss_pred             hhcccCCCCCCHhHHhccCC--cchhhhhhc
Q 037875          163 LIGEKDMDGMTALQLLSCKP--EAFKLKQER  191 (204)
Q Consensus       163 ~~~~~~~~g~t~l~~a~~~~--~~~~~~~~~  191 (204)
                      +++.+|..|.||+++|+.++  ++.+.+...
T Consensus       215 ~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          215 NRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             CccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999998654  565555443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.5e-32  Score=201.22  Aligned_cols=181  Identities=19%  Similarity=0.162  Sum_probs=155.5

Q ss_pred             HHHHHHhhhcccccc------ccCCchHHHHHHhc---CChHHHHHHHhhCchhhhhh------hcccccCCCcHHHHHH
Q 037875            6 IEVCRKISDHALHVL------TVHDDTVLHMATYF---KRDDLALKLLDEIPELYIHK------MTRQNKAGNTVLHATA   70 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~------~~~~~~~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~------~~~~~~~g~~~l~~a~   70 (204)
                      ..++++++++|.+++      +..|.||||+|+..   |+.+++++|++.|++.....      ....+..|.||||+|+
T Consensus        19 ~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~   98 (256)
T 2etb_A           19 TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAI   98 (256)
T ss_dssp             TTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHH
Confidence            357888999998764      56899999999999   99999999999777632111      1123467999999999


Q ss_pred             hcCCCHHHHHHHHhhCCCccccccCC-------------CCcHHHHHHHcCCHHHHHHHHh---cccCCCCCCCCccccC
Q 037875           71 TSSRALPVADKLLRKAPGLLGMRNNN-------------GETALFRSARYGKADIFNFLAG---KIADYDQPSKQPFLQR  134 (204)
Q Consensus        71 ~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~  134 (204)
                      ..++ .+++++|++.++ +++..+..             |.||||+|+..|+.+++++|++   .|++++.       ++
T Consensus        99 ~~g~-~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~-------~d  169 (256)
T 2etb_A           99 EKRS-LQCVKLLVENGA-DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA-------TD  169 (256)
T ss_dssp             HTTC-HHHHHHHHHTTC-CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-------CC
T ss_pred             HcCC-HHHHHHHHHcCC-CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc-------cC
Confidence            9999 999999999998 78888776             9999999999999999999999   8998887       68


Q ss_pred             CCCccHHHHHHH--hCCHH-------HHHHHHHHhchhh-------cccCCCCCCHhHHhccC--Ccchhhhhhccchhh
Q 037875          135 NDQSTVLHMAVI--SQHFE-------LALEIAKEYKYLI-------GEKDMDGMTALQLLSCK--PEAFKLKQERGFFKK  196 (204)
Q Consensus       135 ~~g~t~l~~a~~--~~~~~-------~~~~Ll~~~g~~~-------~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~  196 (204)
                      ..|+||||+|+.  .++.+       ++++|++ .|+++       +.+|..|.||||+|+..  .++.+.+++.|....
T Consensus       170 ~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          170 SLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             TTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            999999999999  78888       9999999 69999       99999999999999854  578888888886553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.4e-32  Score=196.11  Aligned_cols=178  Identities=17%  Similarity=0.224  Sum_probs=138.9

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      .++++++|+++|.+++  +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|
T Consensus        23 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~~~~L   96 (237)
T 3b7b_A           23 HVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-----VDPKDAEGSTCLHLAAKKGH-YEVVQYL   96 (237)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----CCCCCTTSCCHHHHHHHTTC-HHHHHHH
T ss_pred             cHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHcCC-HHHHHHH
Confidence            3678888888887654  56788899999999999999999886665     67778888888888888888 7888888


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.+..+++..+..|.||||+|+..++.+++++|++.|++++.       ++..|.||||+|+..|+.+++++|++ .|+
T Consensus        97 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~  168 (237)
T 3b7b_A           97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-------RDNEENICLHWAAFSGCVDIAEILLA-AKC  168 (237)
T ss_dssp             HTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHHCCHHHHHHHHT-TTC
T ss_pred             HhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-------cCCCCCCHHHHHHHCCCHHHHHHHHH-cCC
Confidence            8887447777788888888888888888888888888887665       46777788888888888888877777 577


Q ss_pred             hhcccCCCCCCHhHHhccC--Ccchhhhhhccchhh
Q 037875          163 LIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKK  196 (204)
Q Consensus       163 ~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~  196 (204)
                      +++.++..|.||||+|+..  .++.+.+++.|....
T Consensus       169 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC
Confidence            8877777788888877643  356666666665543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.2e-31  Score=194.17  Aligned_cols=177  Identities=18%  Similarity=0.162  Sum_probs=123.5

Q ss_pred             HHHHHHhhhccccc---cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcc-cccCCCcHHHHHHhcCCCHHHHHH
Q 037875            6 IEVCRKISDHALHV---LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTR-QNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         6 ~~~~~~l~~~~~~~---~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      .+++++|++.+.+.   .+..|.||||+|+..|+.+++++|++.|+++.   ++. .+..|.||||+|+..++ .+++++
T Consensus        15 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~~~g~t~L~~A~~~~~-~~~~~~   90 (228)
T 2dzn_A           15 FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN---LDDYPDDSGWTPFHIACSVGN-LEVVKS   90 (228)
T ss_dssp             HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC---GGGCCCTTSCCHHHHHHHHCC-HHHHHH
T ss_pred             HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc---ccccCCCCCCCHHHHHHHcCC-HHHHHH
Confidence            56777777777553   45667778888887777788888877663321   344 66677777777777777 777777


Q ss_pred             HHhhC--CCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHH
Q 037875           82 LLRKA--PGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE  159 (204)
Q Consensus        82 Ll~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  159 (204)
                      |++.+  . +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ 
T Consensus        91 Ll~~g~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-  161 (228)
T 2dzn_A           91 LYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-------KDKFNQIPLHRAASVGSLKLIELLCG-  161 (228)
T ss_dssp             HHSSSSCC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-------CCTTSCCHHHHHHHTTCHHHHHHHHT-
T ss_pred             HHhCCCCc-ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc-------cCCCCCCHHHHHHHcCCHHHHHHHHh-
Confidence            77776  4 5666677777777777777777777777777777665       46667777777777777777777777 


Q ss_pred             hc-hhhcccCCCCCCHhHHhccC--Ccchhhhh-hccchh
Q 037875          160 YK-YLIGEKDMDGMTALQLLSCK--PEAFKLKQ-ERGFFK  195 (204)
Q Consensus       160 ~g-~~~~~~~~~g~t~l~~a~~~--~~~~~~~~-~~g~~~  195 (204)
                      .| ++++.+|..|.||||+|+..  .++.+.++ +.|...
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  201 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence            45 77777777777777777633  35556665 555543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-31  Score=194.43  Aligned_cols=174  Identities=21%  Similarity=0.160  Sum_probs=157.1

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|+++|.+++  +..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|
T Consensus        52 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~~~~L  125 (231)
T 3aji_A           52 HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-----VNAVNQNGCTPLHYAASKNR-HEIAVML  125 (231)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHH
T ss_pred             cHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHHHH
Confidence            4689999999998764  67799999999999999999999997766     78899999999999999999 9999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..++.+++++|++ .|+
T Consensus       126 l~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga  196 (231)
T 3aji_A          126 LEGGA-NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-------QDTEGNTPLHLACDEERVEEAKFLVT-QGA  196 (231)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTC
T ss_pred             HHcCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-------cCCCCCCHHHHHHHCCCHHHHHHHHH-CCC
Confidence            99998 8889999999999999999999999999999998876       58899999999999999999999999 699


Q ss_pred             hhcccCCCCCCHhHHhccC--Ccchhhhhhccc
Q 037875          163 LIGEKDMDGMTALQLLSCK--PEAFKLKQERGF  193 (204)
Q Consensus       163 ~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~  193 (204)
                      +++.+|..|.||+++|...  .++.+++.+.|+
T Consensus       197 ~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          197 SIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             CSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            9999999999999999743  456666665543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.1e-31  Score=192.81  Aligned_cols=165  Identities=17%  Similarity=0.190  Sum_probs=149.6

Q ss_pred             HHHHHHHhhhcc--ccc---cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHH
Q 037875            5 VIEVCRKISDHA--LHV---LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVA   79 (204)
Q Consensus         5 ~~~~~~~l~~~~--~~~---~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~   79 (204)
                      ..+++++|+++|  .++   .+..|.||||+|+..|+.+++++|++.|.+   ..++..+..|.||||+|+..++ .+++
T Consensus        48 ~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~~g~t~L~~A~~~~~-~~~~  123 (228)
T 2dzn_A           48 AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK---PDLNKITNQGVTCLHLAVGKKW-FEVS  123 (228)
T ss_dssp             CHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSC---CCTTCCCTTCCCHHHHHHHTTC-HHHH
T ss_pred             CHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---cccccCCcCCCCHHHHHHHcCC-HhHH
Confidence            468999999999  554   456899999999999999999999997722   2378889999999999999999 9999


Q ss_pred             HHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcc-cCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           80 DKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKI-ADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        80 ~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      ++|++.+. +++.++..|.||||+|+..|+.+++++|++.| ++++.       ++..|+||||+|+..|+.+++++|++
T Consensus       124 ~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------~d~~g~t~L~~A~~~~~~~~v~~Ll~  195 (228)
T 2dzn_A          124 QFLIENGA-SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-------QDKQGWTPLFHALAEGHGDAAVLLVE  195 (228)
T ss_dssp             HHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC-------CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC-------cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999998 89999999999999999999999999999998 77776       58999999999999999999999994


Q ss_pred             HhchhhcccCCCCCCHhHHhccC
Q 037875          159 EYKYLIGEKDMDGMTALQLLSCK  181 (204)
Q Consensus       159 ~~g~~~~~~~~~g~t~l~~a~~~  181 (204)
                      ..|++++.+|..|.||+++|...
T Consensus       196 ~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          196 KYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHCCCSCCBCTTSCBGGGGCSST
T ss_pred             hcCCCCCccCCCCCcHHHHHHHH
Confidence            47999999999999999999764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=7e-32  Score=199.24  Aligned_cols=181  Identities=19%  Similarity=0.128  Sum_probs=154.5

Q ss_pred             HHHHHHhhhccccccc------cCCchHHHHHH---hcCChHHHHHHHhhCchhhh------hhhcccccCCCcHHHHHH
Q 037875            6 IEVCRKISDHALHVLT------VHDDTVLHMAT---YFKRDDLALKLLDEIPELYI------HKMTRQNKAGNTVLHATA   70 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~~------~~~~~~L~~A~---~~~~~~~v~~Ll~~g~~~~~------~~~~~~~~~g~~~l~~a~   70 (204)
                      ..+++++++.+.+++.      ..|.||||+|+   ..|+.+++++|++.|++...      ...+..+..|.||||+|+
T Consensus        22 ~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  101 (260)
T 3jxi_A           22 EGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI  101 (260)
T ss_dssp             TTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH
T ss_pred             HHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH
Confidence            3467777888877653      45999999999   67999999999998765322      224455668999999999


Q ss_pred             hcCCCHHHHHHHHhhCCCcccccc--------------CCCCcHHHHHHHcCCHHHHHHHHh---cccCCCCCCCCcccc
Q 037875           71 TSSRALPVADKLLRKAPGLLGMRN--------------NNGETALFRSARYGKADIFNFLAG---KIADYDQPSKQPFLQ  133 (204)
Q Consensus        71 ~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~  133 (204)
                      ..|+ .+++++|++.++ +++..+              ..|.||||+|+..|+.+++++|++   .|++++.       +
T Consensus       102 ~~g~-~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~-------~  172 (260)
T 3jxi_A          102 ERRC-KHYVELLVEKGA-DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR-------Q  172 (260)
T ss_dssp             HTTC-HHHHHHHHHTTC-CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-------C
T ss_pred             HcCC-HHHHHHHHhCCC-CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc-------c
Confidence            9999 999999999998 888887              589999999999999999999999   8888876       6


Q ss_pred             CCCCccHHHHHHHhCC---------HHHHHHHHHHhchhh-------cccCCCCCCHhHHhccC--Ccchhhhhhccchh
Q 037875          134 RNDQSTVLHMAVISQH---------FELALEIAKEYKYLI-------GEKDMDGMTALQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       134 ~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~g~~~-------~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      +..|+||||+|+..++         .+++++|+. .|+++       +.+|..|.||||+|+..  .++.+.+++.|...
T Consensus       173 d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            8999999999999887         799999999 69999       78999999999999854  57888888888765


Q ss_pred             h
Q 037875          196 K  196 (204)
Q Consensus       196 ~  196 (204)
                      .
T Consensus       252 ~  252 (260)
T 3jxi_A          252 A  252 (260)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.98  E-value=1.6e-31  Score=200.02  Aligned_cols=171  Identities=19%  Similarity=0.145  Sum_probs=97.6

Q ss_pred             HHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      .+++++|++.|.++  .+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|+
T Consensus        72 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll  145 (285)
T 3d9h_A           72 QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-----VNGVTADWHTPLFNACVSGS-WDCVNLLL  145 (285)
T ss_dssp             HHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----SSCCCTTCCCHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCH-HHHHHHHH
Confidence            45666666665543  345566666666666666666666665444     44455555555555555554 45555555


Q ss_pred             hhCCC-------------------------------ccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccc
Q 037875           84 RKAPG-------------------------------LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFL  132 (204)
Q Consensus        84 ~~~~~-------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~  132 (204)
                      +.+..                               +++..+..|.||||+|+..|+.+++++|++.|++++.       
T Consensus       146 ~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------  218 (285)
T 3d9h_A          146 QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-------  218 (285)
T ss_dssp             HTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-------
T ss_pred             HCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-------
Confidence            44431                               4444455555555555555555555555555554442       


Q ss_pred             cCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCcchhhhhhc
Q 037875          133 QRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQER  191 (204)
Q Consensus       133 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~  191 (204)
                       +..|.||||+|+..++.+++++|++ .|++++.+|..|.|||++|+.+.++.+.+++.
T Consensus       219 -~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~Ll~~  275 (285)
T 3d9h_A          219 -GKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVPPESPLAQLFLER  275 (285)
T ss_dssp             -CBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTSHHHHHHHHH
T ss_pred             -CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhcCccHHHHHHHHh
Confidence             4556666666666666666666666 46666666666666666666656665555554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=1.7e-31  Score=184.79  Aligned_cols=155  Identities=15%  Similarity=0.091  Sum_probs=141.9

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALF  102 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  102 (204)
                      .|.||||.|+..|+.+++++|++.|.+     ++..+..|.||||+|+..++ .+++++|++.+. +++..+..|.||||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t~L~   74 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-----INHTDEEGFTPLMWAAAHGQ-IAVVEFLLQNGA-DPQLLGKGRESALS   74 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTCCCHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-----cCCCCCCCCCHHHHHHHCCC-HHHHHHHHHcCC-CCCCcCCCCCcHHH
Confidence            578999999999999999999997765     88999999999999999999 999999999987 88999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--
Q 037875          103 RSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--  180 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--  180 (204)
                      +|+..|+.+++++|++.|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.++..|.||+++|+.  
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCGVDVNE-------YDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCc-------CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999999998886       58899999999999999999999999 699999999999999999984  


Q ss_pred             CCcchhhhhhcc
Q 037875          181 KPEAFKLKQERG  192 (204)
Q Consensus       181 ~~~~~~~~~~~g  192 (204)
                      +.++.+.+.+.+
T Consensus       147 ~~~~~~~L~~~~  158 (167)
T 3v31_A          147 YRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            456666665544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.98  E-value=1.3e-31  Score=195.44  Aligned_cols=178  Identities=17%  Similarity=0.138  Sum_probs=140.6

Q ss_pred             HHHHHHhhh----cccc--ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHH
Q 037875            6 IEVCRKISD----HALH--VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVA   79 (204)
Q Consensus         6 ~~~~~~l~~----~~~~--~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~   79 (204)
                      ++++++|++    .+.+  ..+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++
T Consensus        22 ~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~-~~~~   95 (241)
T 1k1a_A           22 LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-----PMALDRHGQTAAHLACEHRS-PTCL   95 (241)
T ss_dssp             HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-----ccccCCCCCCHHHHHHHcCC-HHHH
Confidence            455666654    5554  4467788999999999999999999986665     67778888888888888888 8888


Q ss_pred             HHHHhhCCC---ccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccC-CCCccHHHHHHHhCCHHHHHH
Q 037875           80 DKLLRKAPG---LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQR-NDQSTVLHMAVISQHFELALE  155 (204)
Q Consensus        80 ~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~  155 (204)
                      ++|++.+..   +++..+..|.||||+|+..|+.+++++|++.|++++.       ++ ..|.||||+|+..|+.+++++
T Consensus        96 ~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~~g~t~L~~A~~~~~~~~v~~  168 (241)
T 1k1a_A           96 RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA-------VDIKSGRSPLIHAVENNSLSMVQL  168 (241)
T ss_dssp             HHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-------ccccCCCcHHHHHHHcCCHHHHHH
Confidence            888888752   5666778888888888888888888888888888776       34 678888888888888888888


Q ss_pred             HHHHhchhhcccCCCCCCHhHHhc--cCCcchhhhhhccchhhh
Q 037875          156 IAKEYKYLIGEKDMDGMTALQLLS--CKPEAFKLKQERGFFKKL  197 (204)
Q Consensus       156 Ll~~~g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~~~  197 (204)
                      |++ .|++++.++..|.||||+|+  .+.++.+.+++.|.....
T Consensus       169 Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          169 LLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             HHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            888 58888888888888888887  345677777777765443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.98  E-value=5.7e-32  Score=208.82  Aligned_cols=183  Identities=14%  Similarity=0.154  Sum_probs=137.0

Q ss_pred             HHHHHhhhccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcc-----------------cccCCCcHHHHH
Q 037875            7 EVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTR-----------------QNKAGNTVLHAT   69 (204)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-----------------~~~~g~~~l~~a   69 (204)
                      +++++|+++|.++++..|.||||+|+..|+.+++++|++.+.+ .+..++.                 .+..|.||||+|
T Consensus        67 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  145 (364)
T 3ljn_A           67 DTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE-RGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC  145 (364)
T ss_dssp             HHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHH-HTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH
T ss_pred             HHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccc-cCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH
Confidence            4444555555444444455555555555555555555544111 1222333                 777899999999


Q ss_pred             HhcC--CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHh
Q 037875           70 ATSS--RALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVIS  147 (204)
Q Consensus        70 ~~~~--~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  147 (204)
                      +..|  + .+++++|++.++ +++..+..|.||||+|+..|+.+++++|+++|++..  ..+++.++..|+||||+|+..
T Consensus       146 ~~~g~~~-~~~v~~Ll~~ga-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~~~~~g~t~L~~A~~~  221 (364)
T 3ljn_A          146 VGLGPEY-LEMIKILVQLGA-SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS--SLRLDYANKQGNSHLHWAILI  221 (364)
T ss_dssp             HHSCGGG-HHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSS--SCCTTCCCTTCCCTTHHHHTT
T ss_pred             HHcCCch-HHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccc--cccccccCCCCCcHHHHHHHc
Confidence            9999  8 899999999987 889999999999999999999999999999988711  111233688999999999999


Q ss_pred             CCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchh
Q 037875          148 QHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       148 ~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      |+.+++++|++ .|++++.+|..|.|||++|+..  .++.+.+++.|...
T Consensus       222 g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          222 NWEDVAMRFVE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             TCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             CCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            99999999999 6999999999999999999854  47778888877553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=3.8e-31  Score=192.63  Aligned_cols=168  Identities=19%  Similarity=0.209  Sum_probs=153.7

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|+++|.++  .+..|.||||+|+..|+.+++++|++.|.    ..++..+..|.||||+|+..++ .+++++|
T Consensus        56 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~-~~~~~~L  130 (237)
T 3b7b_A           56 HLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ----MDVNCQDDGGWTPMIWATEYKH-VDLVKLL  130 (237)
T ss_dssp             CHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC----CCTTCCCTTSCCHHHHHHHTTC-HHHHHHH
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC----CCcccCCCCCCCHHHHHHHcCC-HHHHHHH
Confidence            468999999999865  46789999999999999999999999762    2378889999999999999999 9999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.+. +++..+..|.||||+|+..|+.+++++|++.|++++.       ++..|.||||+|+..++.+++++|++ .|+
T Consensus       131 l~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga  201 (237)
T 3b7b_A          131 LSKGS-DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA-------VNIHGDSPLHIAARENRYDCVVLFLS-RDS  201 (237)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC-------CCTTCCCHHHHHHHTTCHHHHHHHHT-TTC
T ss_pred             HHCCC-CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-------cCCCCCCHHHHHHHhCCHhHHHHHHH-cCC
Confidence            99998 8899999999999999999999999999999998876       58899999999999999999999999 699


Q ss_pred             hhcccCCCCCCHhHHhccCCcchh
Q 037875          163 LIGEKDMDGMTALQLLSCKPEAFK  186 (204)
Q Consensus       163 ~~~~~~~~g~t~l~~a~~~~~~~~  186 (204)
                      +++.+|..|.||+++|+.++....
T Consensus       202 d~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          202 DVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             CTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999998876543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=2.6e-31  Score=184.33  Aligned_cols=157  Identities=22%  Similarity=0.240  Sum_probs=141.9

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcH
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETA  100 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  100 (204)
                      ...+.++|+.|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|++.+. +++..+..|.||
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t~   83 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGAD-----VNAEDASGWTPLHLAAFNGH-LEIVEVLLKNGA-DVNAVDHAGMTP   83 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTSCCH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCccCCCCCCH
Confidence            34578999999999999999999997766     88899999999999999999 999999999997 889999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc
Q 037875          101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC  180 (204)
Q Consensus       101 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~  180 (204)
                      ||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+.
T Consensus        84 L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~  155 (169)
T 2y1l_E           84 LRLAALFGHLEIVEVLLKNGADVNA-------NDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISID  155 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999998876       58899999999999999999999999 699999999999999999985


Q ss_pred             C--Ccchhhhhhcc
Q 037875          181 K--PEAFKLKQERG  192 (204)
Q Consensus       181 ~--~~~~~~~~~~g  192 (204)
                      +  .++.+.+++.|
T Consensus       156 ~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          156 NGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCHHHHHHHHTC-
T ss_pred             hCCHHHHHHHHHcC
Confidence            4  46677766654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=2.5e-31  Score=198.04  Aligned_cols=168  Identities=19%  Similarity=0.125  Sum_probs=138.6

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhh-------------------------------
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELY-------------------------------   51 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~-------------------------------   51 (204)
                      ..+++++|+++|++++  +..|.||||+|+..|+.+++++|++.|++..                               
T Consensus        57 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (282)
T 1oy3_D           57 EASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP  136 (282)
T ss_dssp             CHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccccc
Confidence            4689999999998764  6789999999999999999999999775411                               


Q ss_pred             -----------hhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccC-CCCcHHHHHHHcCCHHHHHHHHhc
Q 037875           52 -----------IHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNN-NGETALFRSARYGKADIFNFLAGK  119 (204)
Q Consensus        52 -----------~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~L~~~  119 (204)
                                 +..++..+..|.||||+|+..++ .+++++|++.++ +++..+. .|.||||+|+..|+.+++++|+++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~g~-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  214 (282)
T 1oy3_D          137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD-AEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (282)
T ss_dssp             -------CCCGGGGTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             chhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCC-HHHHHHHHHcCC-CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence                       23467788899999999999999 999999999998 7888775 499999999999999999999999


Q ss_pred             ccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC
Q 037875          120 IADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP  182 (204)
Q Consensus       120 ~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~  182 (204)
                      |++++.       ++..|+||||+|+..|+.+++++|++ .|++++.++..|.||+++|....
T Consensus       215 gad~~~-------~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          215 GADPTA-------RMYGGRTPLGSALLRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             TCCTTC-------CCTTSCCHHHHHHTSSCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred             CCCCcc-------cccCCCCHHHHHHHcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            999887       68999999999999999999999999 69999999999999999997554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=3.4e-31  Score=199.17  Aligned_cols=161  Identities=22%  Similarity=0.219  Sum_probs=135.9

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      .++++++|+++|.+++  +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..|+ .+++++|
T Consensus        52 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~tpL~~A~~~g~-~~~v~~L  125 (299)
T 1s70_B           52 DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-----INQPDNEGWIPLHAAASCGY-LDIAEYL  125 (299)
T ss_dssp             CHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHH
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHcCC-HHHHHHH
Confidence            4678899999997764  67799999999999999999999997766     78889999999999999999 8999999


Q ss_pred             HhhCCCcccccc------------------------------------------------------------CCCCcHHH
Q 037875           83 LRKAPGLLGMRN------------------------------------------------------------NNGETALF  102 (204)
Q Consensus        83 l~~~~~~~~~~~------------------------------------------------------------~~~~t~l~  102 (204)
                      ++.++ +++..+                                                            ..|.||||
T Consensus       126 l~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~  204 (299)
T 1s70_B          126 ISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH  204 (299)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred             HhCCC-CCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHH
Confidence            99887 555443                                                            34667888


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc
Q 037875          103 RSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC  180 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~  180 (204)
                      +|+..|+.+++++|++.|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.+|..|.||+++|..
T Consensus       205 ~A~~~g~~~~v~~Ll~~g~d~~~-------~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          205 VAAAKGYTEVLKLLIQARYDVNI-------KDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTC-------CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS
T ss_pred             HHHHCCcHHHHHHHHHcCCCCCC-------cCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence            88888888888888888887776       57888888888888888888888888 588888888888888888864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=1.2e-31  Score=199.84  Aligned_cols=175  Identities=26%  Similarity=0.251  Sum_probs=152.1

Q ss_pred             HHHHHHHhhhcc----ccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHH-----hcCCC
Q 037875            5 VIEVCRKISDHA----LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATA-----TSSRA   75 (204)
Q Consensus         5 ~~~~~~~l~~~~----~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~-----~~~~~   75 (204)
                      .++.++.+++.+    .+..+..|.||||+|+..|+.+++++|++.|+.    .++..+..|.||||+|+     ..++ 
T Consensus        88 ~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~----~~~~~~~~g~tpL~~a~~~~~~~~~~-  162 (276)
T 4hbd_A           88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVC----KVDKQNRAGYSPIMLTALATLKTQDD-  162 (276)
T ss_dssp             HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC----CTTCCCTTSCCHHHHGGGCCCCSHHH-
T ss_pred             HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----cCCCCCCCCCCHHHHHHHHHhhhhhh-
Confidence            345555555554    566788999999999999999999999998762    38899999999999999     5566 


Q ss_pred             HHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHH
Q 037875           76 LPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALE  155 (204)
Q Consensus        76 ~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  155 (204)
                      .+++++|+..+. +.+..+..|.||||+|+..|+.+++++|++.|++++.       +|..|+||||+|+..|+.+++++
T Consensus       163 ~~~v~~Ll~~g~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-------~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          163 IETVLQLFRLGN-INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV-------QDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             HHHHHHHHHHSC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------CCCCCCCHHHHHHHCCCHHHHHH
Confidence            889999999997 7778888999999999999999999999999999887       68999999999999999999999


Q ss_pred             HHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhcc
Q 037875          156 IAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERG  192 (204)
Q Consensus       156 Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g  192 (204)
                      |++..|++++.+|..|.|||++|+.  +.++.+.+++..
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9985699999999999999999984  456777666543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=3e-32  Score=198.52  Aligned_cols=174  Identities=22%  Similarity=0.206  Sum_probs=151.5

Q ss_pred             HHHHhhhcc------ccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            8 VCRKISDHA------LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         8 ~~~~l~~~~------~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      +++.|++.+      ++..+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++
T Consensus        23 ~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~   96 (236)
T 1ikn_D           23 LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-----PELRDFRGNTPLHLACEQGC-LASVGV   96 (236)
T ss_dssp             SSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-----SCCCCTTCCCHHHHHHHHTC-HHHHHH
T ss_pred             HHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCC-HHHHHH
Confidence            344555554      344577899999999999999999999997766     88899999999999999999 999999


Q ss_pred             HHhhCCC-----ccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCC-CCccHHHHHHHhCCHHHHHH
Q 037875           82 LLRKAPG-----LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRN-DQSTVLHMAVISQHFELALE  155 (204)
Q Consensus        82 Ll~~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~  155 (204)
                      |+..+..     .++..+..|.||||+|+..|+.+++++|+++|++++.       ++. .|.||||+|+..|+.+++++
T Consensus        97 Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~~g~tpL~~A~~~~~~~~v~~  169 (236)
T 1ikn_D           97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-------QEPCNGRTALHLAVDLQNPDLVSL  169 (236)
T ss_dssp             HHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-------CCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------CCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9998752     2566788899999999999999999999999999887       465 89999999999999999999


Q ss_pred             HHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchh
Q 037875          156 IAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       156 Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      |++ .|++++.++..|.|||++|+..  .++.+.+++.|...
T Consensus       170 Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          170 LLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             HHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            999 6999999999999999999854  57888888888754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=6.4e-31  Score=196.83  Aligned_cols=166  Identities=20%  Similarity=0.129  Sum_probs=133.2

Q ss_pred             hhhccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccc
Q 037875           12 ISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLG   91 (204)
Q Consensus        12 l~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~   91 (204)
                      ++++..+..+..|.||||+|+..|+.+++++|++.|.+     ++.++..|.||||+|+..++ .+++++|++.++ +++
T Consensus        47 l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga-~~~  119 (285)
T 3d9h_A           47 LLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-----VNIITADHVSPLHEACLGGH-LSCVKILLKHGA-QVN  119 (285)
T ss_dssp             CCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-----SCEECTTCCCHHHHHHHTTC-HHHHHHHHHTTC-CSS
T ss_pred             hhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHCCc-HHHHHHHHHCCC-CCC
Confidence            45666777889999999999999999999999997766     88899999999999999999 999999999997 899


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCC
Q 037875           92 MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDG  171 (204)
Q Consensus        92 ~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g  171 (204)
                      ..+..|.||||+|+..|+.+++++|++.|++++.        +..|.||||+|+..|+.+++++|++ .|++++.++..|
T Consensus       120 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g  190 (285)
T 3d9h_A          120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--------ESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHL  190 (285)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--------SCTTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTT
T ss_pred             CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--------CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCC
Confidence            9999999999999999999999999999988764        2336666666666666666666666 466666666666


Q ss_pred             CCHhHHhccC--Ccchhhhhhccc
Q 037875          172 MTALQLLSCK--PEAFKLKQERGF  193 (204)
Q Consensus       172 ~t~l~~a~~~--~~~~~~~~~~g~  193 (204)
                      .|||++|+..  .++++.+++.|.
T Consensus       191 ~t~L~~A~~~~~~~~v~~Ll~~ga  214 (285)
T 3d9h_A          191 GTPLYLACENQQRACVKKLLESGA  214 (285)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHCCC
Confidence            6666666533  345555555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1.2e-30  Score=190.30  Aligned_cols=176  Identities=18%  Similarity=0.190  Sum_probs=153.4

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|+++|.++  .+..|.||||+|+..|+.+++++|++.++. ....++..+..|.||||+|+..++ .+++++|
T Consensus        58 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~L  135 (241)
T 1k1a_A           58 LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP-GTLDLEARNYDGLTALHVAVNTEC-QETVQLL  135 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCT-TSCCTTCCCTTSCCHHHHHHHHTC-HHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccccCcCCCcHHHHHHHcCC-HHHHHHH
Confidence            468999999999875  467899999999999999999999998763 223478889999999999999999 9999999


Q ss_pred             HhhCCCcccccc-CCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc
Q 037875           83 LRKAPGLLGMRN-NNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK  161 (204)
Q Consensus        83 l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g  161 (204)
                      ++.+. +++..+ ..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|
T Consensus       136 l~~g~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g  206 (241)
T 1k1a_A          136 LERGA-DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-------QMYSGSSALHSASGRGLLPLVRTLVR-SG  206 (241)
T ss_dssp             HHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------BCTTSCBHHHHHHHHTCHHHHHHHHH-TT
T ss_pred             HHcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHh-cC
Confidence            99998 787777 7899999999999999999999999998876       68899999999999999999999999 69


Q ss_pred             hhhcccCCCCCCHhHHhccCC--cchhhhhhc
Q 037875          162 YLIGEKDMDGMTALQLLSCKP--EAFKLKQER  191 (204)
Q Consensus       162 ~~~~~~~~~g~t~l~~a~~~~--~~~~~~~~~  191 (204)
                      ++++.+|..|.||+++|+..+  ++++.+.+.
T Consensus       207 a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          207 ADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             CCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            999999999999999998543  555555443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.2e-30  Score=199.85  Aligned_cols=184  Identities=19%  Similarity=0.173  Sum_probs=144.1

Q ss_pred             HHHHHhhhc-cccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            7 EVCRKISDH-ALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         7 ~~~~~l~~~-~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      +.++.++.. +.++  .+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..|+ .+++++|+
T Consensus        38 ~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~-~~iv~~Ll  111 (351)
T 3utm_A           38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-----VHAKDKGGLVPLHNACSYGH-YEVTELLL  111 (351)
T ss_dssp             HHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHCCC-HHHHHHHH
Confidence            444444443 4443  466788888888888888888888886655     77778888888888888888 78888888


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCC-------------------------------------
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQP-------------------------------------  126 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~-------------------------------------  126 (204)
                      +.++ +++..+..|.||||+|+..|+.+++++|+++|++++..                                     
T Consensus       112 ~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (351)
T 3utm_A          112 KHGA-CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREAD  190 (351)
T ss_dssp             HTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhcc
Confidence            8876 77777888888888888888888888888877765421                                     


Q ss_pred             ----------------------------------------------CCCccccCCCCccHHHHHHHhCCHHHHHHHHHHh
Q 037875          127 ----------------------------------------------SKQPFLQRNDQSTVLHMAVISQHFELALEIAKEY  160 (204)
Q Consensus       127 ----------------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  160 (204)
                                                                    +.+++.++..|+||||+|+..|+.+++++|++ .
T Consensus       191 ~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~  269 (351)
T 3utm_A          191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-H  269 (351)
T ss_dssp             HHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-T
T ss_pred             HHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH-C
Confidence                                                          12245578889999999999999999999998 6


Q ss_pred             chhhcccCCCCCCHhHHhc--cCCcchhhhhhccchhhhh
Q 037875          161 KYLIGEKDMDGMTALQLLS--CKPEAFKLKQERGFFKKLL  198 (204)
Q Consensus       161 g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~~~~  198 (204)
                      |++++.+|..|.||||+|+  .+.++.+.+++.|......
T Consensus       270 ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~  309 (351)
T 3utm_A          270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII  309 (351)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc
Confidence            9999999999999999998  4557888888888765544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=6.3e-31  Score=201.05  Aligned_cols=189  Identities=21%  Similarity=0.230  Sum_probs=158.9

Q ss_pred             HHHHHHHhhhcccccc--c-cCCchHHHHHHhcCChHHHHHHHhhCchhh----------------------------hh
Q 037875            5 VIEVCRKISDHALHVL--T-VHDDTVLHMATYFKRDDLALKLLDEIPELY----------------------------IH   53 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~-~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~----------------------------~~   53 (204)
                      -++++++|+++|++++  + ..|.||||+|+..|+.++|++|++.|++++                            +.
T Consensus        37 ~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (337)
T 4g8k_A           37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA  116 (337)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccc
Confidence            4689999999999875  3 348999999999999999999999987653                            23


Q ss_pred             hhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccc----------cCCCCcHHHHHHHcCCHHHHHHHHh-cccC
Q 037875           54 KMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMR----------NNNGETALFRSARYGKADIFNFLAG-KIAD  122 (204)
Q Consensus        54 ~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~----------~~~~~t~l~~a~~~~~~~~~~~L~~-~~~~  122 (204)
                      .++..+..|.||+|+|+..++ .+++++|+..++ +++..          +..|.||||+|+..|+.+++++|++ .|++
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~-~~~~~~ll~~ga-~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad  194 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGK-VKALKFLYKRGA-NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD  194 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC
T ss_pred             hhhhhccCCCCHHHHHHHcCc-HHHHHHHHHcCC-CcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC
Confidence            567778899999999999999 899999999887 55432          4568899999999999999999996 4777


Q ss_pred             CCCC------------------------------CCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCC
Q 037875          123 YDQP------------------------------SKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGM  172 (204)
Q Consensus       123 ~~~~------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~  172 (204)
                      ++..                              +.+++.++..|+||||+|+..|+.++++.|+...|++++.+|.+|.
T Consensus       195 ~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~  274 (337)
T 4g8k_A          195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK  274 (337)
T ss_dssp             TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSC
T ss_pred             cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCC
Confidence            6532                              2335678889999999999999999999999867999999999999


Q ss_pred             CHhHHhccC--Ccchhhhhhccchh
Q 037875          173 TALQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       173 t~l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      ||||+|+..  .++.+.+++.|+..
T Consensus       275 TpL~~A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          275 TALLLAVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             BHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999854  57788888888654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.5e-31  Score=202.64  Aligned_cols=172  Identities=15%  Similarity=0.111  Sum_probs=144.3

Q ss_pred             HHHHHHHHhhhccccc---cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCC--HHH
Q 037875            4 KVIEVCRKISDHALHV---LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRA--LPV   78 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~---~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~--~~~   78 (204)
                      .+.++++.|++.|+++   .+..|.||||+|+..|+.++|++|++.|++     ++.++..|.||||+|+..++.  .++
T Consensus       108 ~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-----~n~~d~~g~TpLh~A~~~g~~~~~~~  182 (327)
T 1sw6_A          108 LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGT  182 (327)
T ss_dssp             HHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTBCCTTCCCHHHHHHHSSHHHHTTC
T ss_pred             hHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHhcccccHHH
Confidence            4567888999999876   467899999999999999999999997776     889999999999999998761  256


Q ss_pred             HHHHHhhCCCccccccCCCCcHHHHHHH----cCCHHHHHHHHhcc--------------------cCCCCCCC------
Q 037875           79 ADKLLRKAPGLLGMRNNNGETALFRSAR----YGKADIFNFLAGKI--------------------ADYDQPSK------  128 (204)
Q Consensus        79 ~~~Ll~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~L~~~~--------------------~~~~~~~~------  128 (204)
                      ++.|+..+..+++.++..|.||||+|+.    .|+.+++++|++.+                    ++++....      
T Consensus       183 ~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L  262 (327)
T 1sw6_A          183 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI  262 (327)
T ss_dssp             HHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHH
T ss_pred             HHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChh
Confidence            7777777644788999999999999999    89999999999874                    33332111      


Q ss_pred             ------------CccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC
Q 037875          129 ------------QPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK  181 (204)
Q Consensus       129 ------------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~  181 (204)
                                  +++.++..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.+
T Consensus       263 ~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhc
Confidence                        255678999999999999999999999998 6999999999999999999865

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2.6e-31  Score=183.46  Aligned_cols=160  Identities=19%  Similarity=0.151  Sum_probs=142.5

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCc
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGET   99 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t   99 (204)
                      .+.++.++|+.|+..|+.+++++|++.+..    .++..+..|.||||+|+..++ .+++++|++.+. +++..+..|.|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~----~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t   77 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV----NCRDIEGRQSTPLHFAAGYNR-VSVVEYLLQHGA-DVHAKDKGGLV   77 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTT----TCCCTTTTCCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTSCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCC----CccccccCCCCHHHHHHHcCh-HHHHHHHHhcCC-CCCccCCCCCC
Confidence            466789999999999999999999986432    367778889999999999999 999999999998 89999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          100 ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      |||+|+..|+.+++++|+++|++++.       ++..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|.
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~  149 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGAVVNV-------ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVK  149 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSC
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHh
Confidence            99999999999999999999999887       58899999999999999999999999 69999999999999999987


Q ss_pred             c-CCcchhhhhhccc
Q 037875          180 C-KPEAFKLKQERGF  193 (204)
Q Consensus       180 ~-~~~~~~~~~~~g~  193 (204)
                      . +.++.+++.+.|+
T Consensus       150 ~~~~~i~~~L~~~gA  164 (165)
T 3twr_A          150 DGDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCHHHHHHHHTC--
T ss_pred             cCChHHHHHHhhccc
Confidence            4 3477777777765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.4e-31  Score=182.27  Aligned_cols=156  Identities=22%  Similarity=0.227  Sum_probs=140.5

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHH
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETAL  101 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  101 (204)
                      ....+|||.|+..|+.+++++|++.|.+     ++..+..|.||||+|+. ++ .+++++|++.+. +++.++..|.|||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~-~~-~~~v~~Ll~~g~-~~~~~~~~g~t~L   74 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVN-----VNAQNGFGRTALQVMKL-GN-PEIARRLLLRGA-NPDLKDRTGFAVI   74 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCC-----TTCCCTTSCCHHHHCCS-SC-HHHHHHHHHTTC-CTTCCCTTSCCHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCC-----ccccCccCccHHHHHHc-Cc-HHHHHHHHHcCC-CCCCCCCCCCCHH
Confidence            3467999999999999999999997765     78899999999999998 88 899999999997 8999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh-hcccCCCCCCHhHHhcc
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL-IGEKDMDGMTALQLLSC  180 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~-~~~~~~~g~t~l~~a~~  180 (204)
                      |+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|++ ++.++..|.|||++|+.
T Consensus        75 ~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~  146 (162)
T 1ihb_A           75 HDAARAGFLDTLQTLLEFQADVNI-------EDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARL  146 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHH
Confidence            999999999999999999998876       58899999999999999999999999 5887 69999999999999985


Q ss_pred             --CCcchhhhhhccc
Q 037875          181 --KPEAFKLKQERGF  193 (204)
Q Consensus       181 --~~~~~~~~~~~g~  193 (204)
                        +.++.+.+++.|+
T Consensus       147 ~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          147 YGRNEVVSLMQANGA  161 (162)
T ss_dssp             TTCHHHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHhCC
Confidence              4578888888775

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=8.2e-31  Score=182.13  Aligned_cols=156  Identities=17%  Similarity=0.107  Sum_probs=120.0

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFR  103 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~  103 (204)
                      +.+|||.|+..|+.+++++|++.+...    ++..+..|.||||+|+..++ .+++++|++.++ +++..+..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNL----VNKPDERGFTPLIWASAFGE-IETVRFLLEWGA-DPHILAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGG----GGCCCTTSCCHHHHHHHTTC-HHHHHHHHHHTC-CTTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCccc----ccCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CchhhcccCCCHHHH
Confidence            357788888888888888888866542    66777788888888888887 788888888876 777778888888888


Q ss_pred             HHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--C
Q 037875          104 SARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--K  181 (204)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~  181 (204)
                      |+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.++..|.|||++|+.  +
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVDINI-------YDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGY  147 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHCCCHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCc
Confidence            8888888888888888777665       46778888888888888888888887 588888888888888888873  4


Q ss_pred             Ccchhhhhhccc
Q 037875          182 PEAFKLKQERGF  193 (204)
Q Consensus       182 ~~~~~~~~~~g~  193 (204)
                      .++.+.+++.|.
T Consensus       148 ~~~~~~L~~~~~  159 (172)
T 3v30_A          148 RKVQQVIENHIL  159 (172)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            466666666654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=8.4e-31  Score=194.85  Aligned_cols=178  Identities=19%  Similarity=0.150  Sum_probs=149.7

Q ss_pred             HHHHhhhcccccc------ccCCchHHHHHHhc---CChHHHHHHHhhCchhhhh--hhc----ccccCCCcHHHHHHhc
Q 037875            8 VCRKISDHALHVL------TVHDDTVLHMATYF---KRDDLALKLLDEIPELYIH--KMT----RQNKAGNTVLHATATS   72 (204)
Q Consensus         8 ~~~~l~~~~~~~~------~~~~~~~L~~A~~~---~~~~~v~~Ll~~g~~~~~~--~~~----~~~~~g~~~l~~a~~~   72 (204)
                      +++++.+.+.+++      +..|.||||+|+..   |+.+++++|++.|++....  .++    ..+..|.||||+|+..
T Consensus        32 Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~  111 (273)
T 2pnn_A           32 LLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER  111 (273)
T ss_dssp             HHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT
T ss_pred             HHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc
Confidence            4444445665543      67899999999987   9999999999987653210  122    2567899999999999


Q ss_pred             CCCHHHHHHHHhhCCCccccccC--------------CCCcHHHHHHHcCCHHHHHHHHh---cccCCCCCCCCccccCC
Q 037875           73 SRALPVADKLLRKAPGLLGMRNN--------------NGETALFRSARYGKADIFNFLAG---KIADYDQPSKQPFLQRN  135 (204)
Q Consensus        73 ~~~~~~~~~Ll~~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~  135 (204)
                      ++ .+++++|++.++ +++..+.              .|.||||+|+..|+.+++++|++   .|++++.       ++.
T Consensus       112 g~-~~~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~-------~d~  182 (273)
T 2pnn_A          112 RN-MTLVTLLVENGA-DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA-------RDS  182 (273)
T ss_dssp             TC-HHHHHHHHHTTC-CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-------CCT
T ss_pred             CC-HHHHHHHHHCCC-CcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee-------eCC
Confidence            99 999999999998 7888876              79999999999999999999999   8888876       689


Q ss_pred             CCccHHHHHHHhCC---------HHHHHHHHHHhchhhc-------ccCCCCCCHhHHhccC--Ccchhhhhhccchh
Q 037875          136 DQSTVLHMAVISQH---------FELALEIAKEYKYLIG-------EKDMDGMTALQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       136 ~g~t~l~~a~~~~~---------~~~~~~Ll~~~g~~~~-------~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      .|+||||+|+..|+         .+++++|++ .|++++       .+|..|.||||+|+..  .++.+.+++.|+.+
T Consensus       183 ~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-
T ss_pred             CCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCC
Confidence            99999999999998         799999999 699997       4899999999999854  57888999999843

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.4e-31  Score=196.72  Aligned_cols=178  Identities=17%  Similarity=0.122  Sum_probs=135.6

Q ss_pred             HHHHHHHhhhcccc----------ccccCCchHHHHHHhcCCh-HHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcC
Q 037875            5 VIEVCRKISDHALH----------VLTVHDDTVLHMATYFKRD-DLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSS   73 (204)
Q Consensus         5 ~~~~~~~l~~~~~~----------~~~~~~~~~L~~A~~~~~~-~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~   73 (204)
                      -++++++|++.+.+          ..+..+.+||+.|+..+.. .+++.|++.|++     +|.++..|.||||+|+..|
T Consensus        23 ~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-----vn~~d~~G~TpLh~A~~~g   97 (269)
T 4b93_B           23 DLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-----VNVTSQDGSSPLHVAALHG   97 (269)
T ss_dssp             CHHHHHHHHTCC----------------------------------------CCCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred             CHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcC
Confidence            36889999998754          2345689999999988765 578999997766     8899999999999999999


Q ss_pred             CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHH
Q 037875           74 RALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA  153 (204)
Q Consensus        74 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  153 (204)
                      + .+++++|+..++ +++..+..|.||++.|+..++.+++++|++.|++++.       ++..|+||||+|+..|+.+++
T Consensus        98 ~-~~~v~~Ll~~~a-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~-------~d~~g~TpL~~A~~~g~~~~v  168 (269)
T 4b93_B           98 R-ADLIPLLLKHGA-NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK-------KDLSGNTPLIYACSGGHHELV  168 (269)
T ss_dssp             C-TTHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-------CCTTCCCHHHHHHHTTCGGGH
T ss_pred             c-HHHHHHHHhcCC-CcCccCCCCCCccccccccChHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHHCCCHHHH
Confidence            9 899999999998 8899999999999999999999999999999998876       689999999999999999999


Q ss_pred             HHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchhhh
Q 037875          154 LEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKKL  197 (204)
Q Consensus       154 ~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~~  197 (204)
                      ++|++ .|++++.++..|.||||+|+..  .++.+.+++.|+....
T Consensus       169 ~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          169 ALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV  213 (269)
T ss_dssp             HHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            99999 6999999999999999999854  4788888888876543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=4.2e-30  Score=191.39  Aligned_cols=183  Identities=21%  Similarity=0.174  Sum_probs=149.0

Q ss_pred             HHHHHHHhhhcccccc---ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDHALHVL---TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~---~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      .++++++|+++|.+++   +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++
T Consensus        17 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~   90 (285)
T 1wdy_A           17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----PVLRKKNGATPFLLAAIAGS-VKLLKL   90 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHHTC-HHHHHH
T ss_pred             CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHHHHHHHcCC-HHHHHH
Confidence            4689999999998765   56789999999999999999999997766     78889999999999999999 999999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCC---ccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQ---PFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        82 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      |++.+. +++..+..|.||||+|+..|+.+++++|++.|++++.....   ....+..|.||||+|+..|+.+++++|++
T Consensus        91 Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  169 (285)
T 1wdy_A           91 FLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  169 (285)
T ss_dssp             HHHTTC-CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHcCC-CCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            999998 88899999999999999999999999999999987753110   01115667788888888888888888877


Q ss_pred             HhchhhcccCCCCCCHhHHhccCC------cchhhhhhccch
Q 037875          159 EYKYLIGEKDMDGMTALQLLSCKP------EAFKLKQERGFF  194 (204)
Q Consensus       159 ~~g~~~~~~~~~g~t~l~~a~~~~------~~~~~~~~~g~~  194 (204)
                      ..|++++.++..|.|||++|+..+      ++.+.+++.|..
T Consensus       170 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~  211 (285)
T 1wdy_A          170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD  211 (285)
T ss_dssp             TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC
T ss_pred             hcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC
Confidence            557888887778888888776443      345555555543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.8e-30  Score=178.28  Aligned_cols=155  Identities=15%  Similarity=0.073  Sum_probs=136.9

Q ss_pred             HHHHHHHhhhcccc---ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDHALH---VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~~~~---~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      -+++++.+++.+..   ..+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++
T Consensus        14 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~   87 (172)
T 3v30_A           14 ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-----PHILAKERESALSLASTGGY-TDIVGL   87 (172)
T ss_dssp             CHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCCCTTCCCHHHHHHHTTC-HHHHHH
T ss_pred             CHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----chhhcccCCCHHHHHHHCCC-HHHHHH
Confidence            36788999998854   4577899999999999999999999997766     88899999999999999999 999999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc
Q 037875           82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK  161 (204)
Q Consensus        82 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g  161 (204)
                      |++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .+
T Consensus        88 Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~t~l~~A~~~~~~~~~~~L~~-~~  158 (172)
T 3v30_A           88 LLERDV-DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-------EADSGYTPMDLAVALGYRKVQQVIEN-HI  158 (172)
T ss_dssp             HHTTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHHTCHHHHHHHHH-HH
T ss_pred             HHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-------cCCCCCCHHHHHHHhCcHHHHHHHHH-HH
Confidence            999998 8999999999999999999999999999999998876       58899999999999999999999999 69


Q ss_pred             hhhcccCCCCCCH
Q 037875          162 YLIGEKDMDGMTA  174 (204)
Q Consensus       162 ~~~~~~~~~g~t~  174 (204)
                      +++..++..|.||
T Consensus       159 ~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHSCC-------
T ss_pred             HHHhcccCCCCCC
Confidence            9999999999887

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=3.8e-30  Score=191.60  Aligned_cols=183  Identities=20%  Similarity=0.217  Sum_probs=109.6

Q ss_pred             HHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      .+++++|+++|.++  .+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|+
T Consensus        52 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll  125 (285)
T 1wdy_A           52 EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-----VNECDFYGFTAFMEAAVYGK-VKALKFLY  125 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCBCTTCCBHHHHHHHTTC-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCcccCCHHHHHHHhCC-HHHHHHHH
Confidence            45556666665543  244556666666666666666666664443     44445555555555555554 45555555


Q ss_pred             hhCCCccccc----------cCCCCcHHHHHHHcCCHHHHHHHHhc-ccCCCCC--------------------------
Q 037875           84 RKAPGLLGMR----------NNNGETALFRSARYGKADIFNFLAGK-IADYDQP--------------------------  126 (204)
Q Consensus        84 ~~~~~~~~~~----------~~~~~t~l~~a~~~~~~~~~~~L~~~-~~~~~~~--------------------------  126 (204)
                      +.+. +++..          +..|.||||+|+..|+.+++++|++. |++++..                          
T Consensus       126 ~~g~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~  204 (285)
T 1wdy_A          126 KRGA-NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL  204 (285)
T ss_dssp             HTTC-CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHH
T ss_pred             HhCC-CcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHH
Confidence            5444 33333          33444455555444444444444443 4333321                          


Q ss_pred             ----CCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhccchh
Q 037875          127 ----SKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERGFFK  195 (204)
Q Consensus       127 ----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~~~  195 (204)
                          +.+++.++..|.||||+|+..|+.+++++|++..|++++.+|..|.|||++|+.  +.++.+.+++.|...
T Consensus       205 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence                111233677888888888888888888888886688888888888888888874  457777888877654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=4.1e-30  Score=186.64  Aligned_cols=165  Identities=21%  Similarity=0.114  Sum_probs=142.1

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhh-CchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcc-----ccccCC
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDE-IPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLL-----GMRNNN   96 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~-----~~~~~~   96 (204)
                      .|.||||+|+..|+.+++++|++. |.+     ++.++..|.||||+|+..|+ .+++++|++.++ ++     +..+..
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-----~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~~~-~~~~~~~~~~~~~   74 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE-----VHQRGAMGETALHIAALYDN-LEAAMVLMEAAP-ELVFEPMTSELYE   74 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHCG-GGGGCCCCSTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC-----cccCCCCCCCHHHHHHHcCC-HHHHHHHHHcCc-hhccccccccCCC
Confidence            489999999999999999999996 555     88999999999999999999 999999999987 44     556778


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcccCCCCCCC------CccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCC
Q 037875           97 GETALFRSARYGKADIFNFLAGKIADYDQPSK------QPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMD  170 (204)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~  170 (204)
                      |.||||+|+..|+.+++++|+++|++++....      ..+..+..|.||||+|+..|+.+++++|++ .|++++.+|..
T Consensus        75 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~  153 (232)
T 2rfa_A           75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSL  153 (232)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             CcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC
Confidence            99999999999999999999999999876321      112234479999999999999999999999 69999999999


Q ss_pred             CCCHhHHhccCC--cch----hhhhhccchh
Q 037875          171 GMTALQLLSCKP--EAF----KLKQERGFFK  195 (204)
Q Consensus       171 g~t~l~~a~~~~--~~~----~~~~~~g~~~  195 (204)
                      |.||||+|+..+  ++.    +.+++.|...
T Consensus       154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          154 GNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             CCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            999999999665  333    7777777644

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=3e-30  Score=176.09  Aligned_cols=144  Identities=23%  Similarity=0.175  Sum_probs=132.8

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFR  103 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~  103 (204)
                      ..++|+.|+..|+.+++++|++.|.+     ++ .+..|.||||+|+..++ .+++++|++.+. +++..+..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~-~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t~L~~   73 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAP-----FT-TDWLGTSPLHLAAQYGH-FSTTEVLLRAGV-SRDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC-----CC-CCTTCCCHHHHHHHHTC-HHHHHHHHTTTC-CTTCCCTTCCCHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCC-----CC-cCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCCCCCCCCCHHHH
Confidence            46899999999999999999998775     33 57889999999999999 999999999997 889999999999999


Q ss_pred             HHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCc
Q 037875          104 SARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPE  183 (204)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~  183 (204)
                      |+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.++..|.||+++|+.++.
T Consensus        74 A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           74 AASEGHANIVEVLLKHGADVNA-------KDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHcChHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999998876       58899999999999999999999999 699999999999999999986553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=9.5e-31  Score=195.88  Aligned_cols=176  Identities=14%  Similarity=0.011  Sum_probs=154.1

Q ss_pred             HHHHHHHHhhhccccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            4 KVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      +..++.++|.+.+.+..+..|.||||+|+..|+.+++++|++.|++     ++..  +|.||||+|+..++ .+++++|+
T Consensus        11 ~~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~--~g~t~L~~A~~~g~-~~~v~~Ll   82 (285)
T 3kea_A           11 KSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-----KNLL--ENEFPLHQAATLED-TKIVKILL   82 (285)
T ss_dssp             CHHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-----GSCC--TTCCHHHHHTTSSS-CHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----CCCC--CCCCHHHHHHHcCC-HHHHHHHH
Confidence            4567788888888888999999999999999999999999997766     5655  48999999999999 89999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCC-ccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ-STVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      +.|+ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..| .||||+|+..|+.+++++|++ .|+
T Consensus        83 ~~ga-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-------~~~~g~~t~L~~A~~~~~~~~v~~Ll~-~g~  153 (285)
T 3kea_A           83 FSGL-DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-------YGKTGWKTSFYHAVMLNDVSIVSYFLS-EIP  153 (285)
T ss_dssp             HTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-------CSSSGGGSHHHHHHHTTCHHHHHHHHT-TSC
T ss_pred             HCCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc-------cCCCCCCCHHHHHHHcCCHHHHHHHHh-CCC
Confidence            9998 8999999999999999999999999999999998776       57888 799999999999999999999 587


Q ss_pred             hhcccCCCCCCHhHHhccC--Ccchhhhhhccchhhh
Q 037875          163 LIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKKL  197 (204)
Q Consensus       163 ~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~~  197 (204)
                      +.... ..|.||||+|+..  .++.+.+++.|.....
T Consensus       154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~  189 (285)
T 3kea_A          154 STFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNT  189 (285)
T ss_dssp             TTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCT
T ss_pred             ccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCc
Confidence            77433 3899999999854  5778888887765443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=2.8e-30  Score=180.69  Aligned_cols=161  Identities=16%  Similarity=0.117  Sum_probs=142.7

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHH
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETAL  101 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  101 (204)
                      .++.++|+.|+..|+.+++++|++.+..    .++..+..|.||||+|+..++ .+++++|++.++ +++..+..|.|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~----~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEN----DLNQGDDHGFSPLHWACREGR-SAVVEMLIMRGA-RINVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTS----CTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcc----cccccCCCCCCHHHHHHHcCc-HHHHHHHHHcCC-CCCCcCCCCCCHH
Confidence            4678999999999999999999997432    388899999999999999999 999999999997 8999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc-
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC-  180 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~-  180 (204)
                      |+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.++..|.||+++|+. 
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~~~~-------~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYKADINA-------VNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCc-------cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHH
Confidence            999999999999999999998887       58899999999999999999999999 699999999999999999974 


Q ss_pred             -CCcchhhhhhccchhh
Q 037875          181 -KPEAFKLKQERGFFKK  196 (204)
Q Consensus       181 -~~~~~~~~~~~g~~~~  196 (204)
                       +.++.+.+++.|....
T Consensus       149 ~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          149 LRELLRERAEKMGQNLN  165 (179)
T ss_dssp             HHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHhhcCcc
Confidence             4567777777776543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=6.2e-30  Score=201.83  Aligned_cols=114  Identities=27%  Similarity=0.357  Sum_probs=51.1

Q ss_pred             cccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCC
Q 037875           56 TRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRN  135 (204)
Q Consensus        56 ~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  135 (204)
                      +..+..|.||||+|+..++ .+++++|++++. +++.++..|.||||+|+..|+.+++++|+++|++++.       ++.
T Consensus       272 ~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-------~~~  342 (437)
T 1n11_A          272 NLGNKSGLTPLHLVAQEGH-VPVADVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-------KTK  342 (437)
T ss_dssp             TCCCTTCCCHHHHHHHHTC-HHHHHHHHHHTC-CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC-------CCT
T ss_pred             CCCCCCCCCHHHHHHHcCC-HHHHHHHHhCCc-cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC-------CCC
Confidence            3334444444444444444 344444444443 3444444444444444444444444444444444333       244


Q ss_pred             CCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          136 DQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       136 ~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      .|+||||+|+..|+.+++++|++ .|++++.+|.+|.||+++|.
T Consensus       343 ~g~t~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~l~~A~  385 (437)
T 1n11_A          343 LGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAK  385 (437)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHH
T ss_pred             CCCCHHHHHHHCChHHHHHHHHH-CcCCCCCCCCCCCCHHHHHH
Confidence            44444444444444444444444 34444444444444444444

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.1e-29  Score=194.45  Aligned_cols=171  Identities=19%  Similarity=0.184  Sum_probs=129.6

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|+++|.++  .+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|
T Consensus        70 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~L  143 (351)
T 3utm_A           70 RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-----VNAMDLWQFTPLHEAASKNR-VEVCSLL  143 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTC-HHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHHHH
Confidence            356677777777654  355677777777777777777777775554     55666666666666666665 5666655


Q ss_pred             HhhCCC--------------------------------------------------------------------------
Q 037875           83 LRKAPG--------------------------------------------------------------------------   88 (204)
Q Consensus        83 l~~~~~--------------------------------------------------------------------------   88 (204)
                      ++.++.                                                                          
T Consensus       144 l~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~  223 (351)
T 3utm_A          144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH  223 (351)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCS
T ss_pred             HHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhC
Confidence            554331                                                                          


Q ss_pred             ---------------ccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHH
Q 037875           89 ---------------LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA  153 (204)
Q Consensus        89 ---------------~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  153 (204)
                                     +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|+||||+|+..|+.+++
T Consensus       224 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~-------~d~~g~t~L~~A~~~~~~~~v  296 (351)
T 3utm_A          224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA-------LDSLGQTALHRAALAGHLQTC  296 (351)
T ss_dssp             TTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHHTCHHHH
T ss_pred             ccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-------cCCCCCCHHHHHHHcCcHHHH
Confidence                           4555677889999999999999999999999988876       689999999999999999999


Q ss_pred             HHHHHHhchhhcccCCCCCCHhHHhccCCcchhhhhhc
Q 037875          154 LEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQER  191 (204)
Q Consensus       154 ~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~  191 (204)
                      ++|++ .|++++.+|..|.||+++|.  ..+.+.+.+.
T Consensus       297 ~~Ll~-~gad~~~~~~~g~tal~~a~--~~~~~~l~~~  331 (351)
T 3utm_A          297 RLLLS-YGSDPSIISLQGFTAAQMGN--EAVQQILSES  331 (351)
T ss_dssp             HHHHH-TTCCTTCCCTTSCCHHHHSC--HHHHHHHHHC
T ss_pred             HHHHH-cCCCCCCcCCCCCChhhhhh--HHHHHHHHhc
Confidence            99999 69999999999999999983  3344444333

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=3.8e-30  Score=199.44  Aligned_cols=178  Identities=20%  Similarity=0.169  Sum_probs=88.1

Q ss_pred             HHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhC
Q 037875            9 CRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKA   86 (204)
Q Consensus         9 ~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~   86 (204)
                      ++.+++.|++++  +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|++.+
T Consensus       149 ~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-----~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~~  222 (373)
T 2fo1_E          149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-----PTIYNKSERSALHQAAANRD-FGMMVYMLNST  222 (373)
T ss_dssp             HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTCCCHHHHHHHTTC-HHHHHHHTTSH
T ss_pred             HHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-----CcccCCCCCCHHHHHHHCCC-HHHHHHHHhcC
Confidence            344555554432  44556666666666666666666654443     44444455555555555554 45555554443


Q ss_pred             C--CccccccCCCCcHHHHHHHcC---CHHHHHHHHhcccCCCCCC----------------------------------
Q 037875           87 P--GLLGMRNNNGETALFRSARYG---KADIFNFLAGKIADYDQPS----------------------------------  127 (204)
Q Consensus        87 ~--~~~~~~~~~~~t~l~~a~~~~---~~~~~~~L~~~~~~~~~~~----------------------------------  127 (204)
                      .  .+++..+..|.||||+|+..+   +.+++++|++.|++++...                                  
T Consensus       223 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~  302 (373)
T 2fo1_E          223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK  302 (373)
T ss_dssp             HHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS
T ss_pred             ccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc
Confidence            1  134444444444444444444   3444444444444443211                                  


Q ss_pred             -CCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccc
Q 037875          128 -KQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGF  193 (204)
Q Consensus       128 -~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~  193 (204)
                       .+++.++..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+.+  .++.+.+++.+.
T Consensus       303 ~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          303 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence             0011145555666666666666666655555 3666666666666666666533  344444444443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1e-29  Score=200.60  Aligned_cols=178  Identities=19%  Similarity=0.136  Sum_probs=162.4

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|+++|.++.  +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|
T Consensus       191 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~-~~~v~~L  264 (437)
T 1n11_A          191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-----ANAESVQGVTPLHLAAQEGH-AEMVALL  264 (437)
T ss_dssp             CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTC-HHHHHHH
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHCCC-HHHHHHH
Confidence            4689999999998754  56799999999999999999999997766     78889999999999999999 9999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.++ +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|+||||+|+..|+.+++++|++ .|+
T Consensus       265 l~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga  335 (437)
T 1n11_A          265 LSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-------TTRMGYTPLHVASHYGNIKLVKFLLQ-HQA  335 (437)
T ss_dssp             HTTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-------CCSSCCCHHHHHHHSSCSHHHHHHHH-TTC
T ss_pred             HhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC-------CCCCCCCHHHHHHHcCcHHHHHHHHh-cCC
Confidence            99998 8889999999999999999999999999999999887       58899999999999999999999999 699


Q ss_pred             hhcccCCCCCCHhHHhccC--Ccchhhhhhccchhhh
Q 037875          163 LIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKKL  197 (204)
Q Consensus       163 ~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~~  197 (204)
                      +++.++..|.||||+|+..  .++.+.+++.|.....
T Consensus       336 d~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence            9999999999999999854  5788888888876543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=6.5e-30  Score=197.34  Aligned_cols=175  Identities=15%  Similarity=0.084  Sum_probs=154.5

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      .++++++|+++|.++  .+..|.||||+|+..|+.+++++|++.|++       ..+..|.||||+|+..++ .+++++|
T Consensus        32 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------~~~~~g~t~L~~A~~~g~-~~~v~~L  103 (364)
T 3ljn_A           32 QTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-------HSLWHGQKPIHLAVMANK-TDLVVAL  103 (364)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC-------CCCBTTBCHHHHHHHTTC-HHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-------ccccCCCCHHHHHHHcCC-HHHHHHH
Confidence            468899999998765  467899999999999999999999998764       234579999999999999 9999999


Q ss_pred             Hhh----CCCcccc-----------------ccCCCCcHHHHHHHcC--CHHHHHHHHhcccCCCCCCCCccccCCCCcc
Q 037875           83 LRK----APGLLGM-----------------RNNNGETALFRSARYG--KADIFNFLAGKIADYDQPSKQPFLQRNDQST  139 (204)
Q Consensus        83 l~~----~~~~~~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t  139 (204)
                      ++.    +. +++.                 .+..|.||||+|+..|  +.+++++|++.|++++.       ++..|.|
T Consensus       104 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~-------~d~~g~t  175 (364)
T 3ljn_A          104 VEGAKERGQ-MPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-------KDKADET  175 (364)
T ss_dssp             HHHHHHHTC-CHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC-------CCTTSCC
T ss_pred             HHhccccCC-CHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc-------cCCCCCC
Confidence            998    65 5555                 7888999999999999  99999999999999887       5889999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhchh-----hcccCCCCCCHhHHhccC--Ccchhhhhhccchhh
Q 037875          140 VLHMAVISQHFELALEIAKEYKYL-----IGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKK  196 (204)
Q Consensus       140 ~l~~a~~~~~~~~~~~Ll~~~g~~-----~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~  196 (204)
                      |||+|+..|+.+++++|++ .|++     ++..+..|.||||+|+..  .++.+.+++.|+...
T Consensus       176 ~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~  238 (364)
T 3ljn_A          176 PLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN  238 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999 5888     999999999999999855  478888888886643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=2.1e-29  Score=183.33  Aligned_cols=185  Identities=20%  Similarity=0.233  Sum_probs=134.1

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      -.+++++|++.|.+++  +..|.||||+|+..|+.+++++|++.|++.    ....+..|.||||+|+..++ .+++++|
T Consensus        21 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~~~t~L~~A~~~~~-~~~v~~L   95 (240)
T 3eu9_A           21 IYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV----DQLGGDLNSTPLHWATRQGH-LSMVVQL   95 (240)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----TCCBTTTTBCHHHHHHHHTC-HHHHHHH
T ss_pred             ChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc----hhhcCCcCCChhHHHHHcCC-HHHHHHH
Confidence            3567778888776653  556778888888888888888888866652    22333447777777777777 7777777


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCC---------------------------CCccccCC
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPS---------------------------KQPFLQRN  135 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~---------------------------~~~~~~~~  135 (204)
                      ++.+. +++..+..|.||||+|+..|+.+++++|++.|++++...                           .+++..+.
T Consensus        96 l~~g~-~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~  174 (240)
T 3eu9_A           96 MKYGA-DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK  174 (240)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCT
T ss_pred             HHcCC-CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhc
Confidence            77776 667777777777777777777777777777776654321                           11233454


Q ss_pred             -CCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchhh
Q 037875          136 -DQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKK  196 (204)
Q Consensus       136 -~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~  196 (204)
                       .|.||||+|+..|+.+++++|++ .|++++.++..|.||+++|+..  .++.+.+++.+..+.
T Consensus       175 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          175 YHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence             78899999999999999999998 5999999999999999999844  567777777765543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-29  Score=196.72  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=128.7

Q ss_pred             HHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHh
Q 037875           39 LALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAG  118 (204)
Q Consensus        39 ~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~  118 (204)
                      .++.|++.|++     ++..|..|.||||+|+..|+ .+++++|++.++ +++..+..|.||||+|+..|+.+++++|++
T Consensus       148 ~~~~ll~~ga~-----vn~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~ga-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  220 (373)
T 2fo1_E          148 EAKECIAAGAD-----VNAMDCDENTPLMLAVLARR-RRLVAYLMKAGA-DPTIYNKSERSALHQAAANRDFGMMVYMLN  220 (373)
T ss_dssp             HHHHHHHTCCC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHhcCCC-----CcCCCCCCCCHHHHHHHcCh-HHHHHHHHHCCC-CCcccCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            46788897766     88999999999999999999 999999999998 899999999999999999999999999999


Q ss_pred             cc---cCCCCCC-----------------------------CCccc--------cCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875          119 KI---ADYDQPS-----------------------------KQPFL--------QRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus       119 ~~---~~~~~~~-----------------------------~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      .+   ++++...                             .+++.        ++..|.||||+|+..|+.+++++|++
T Consensus       221 ~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  300 (373)
T 2fo1_E          221 STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG  300 (373)
T ss_dssp             SHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH
T ss_pred             cCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHH
Confidence            87   5554321                             11222        45589999999999999999999998


Q ss_pred             HhchhhcccCCCCCCHhHHhcc--CCcchhhhhhccchhh
Q 037875          159 EYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERGFFKK  196 (204)
Q Consensus       159 ~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~~~~  196 (204)
                      ..|++++.+|..|.||||+|+.  +.++++.+++.|....
T Consensus       301 ~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  340 (373)
T 2fo1_E          301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE  340 (373)
T ss_dssp             HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             hcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            6569999999999999999984  4578888888886543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=5.9e-29  Score=186.91  Aligned_cols=169  Identities=22%  Similarity=0.250  Sum_probs=147.7

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHH
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETAL  101 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  101 (204)
                      ..+.||||.||..|+.+++++|++.|++     ++..+..|.||||+|+..|+ .+++++|++.|+ +++..+..|.|||
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga-~~~~~~~~g~tpL  110 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGAD-----INYANVDGLTALHQACIDDN-VDMVKFLVENGA-NINQPDNEGWIPL  110 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC-----TTCBCTTCCBHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTSCCHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHHHHHHHcCC-HHHHHHHHHCCC-CCCCCCCCCCcHH
Confidence            3578999999999999999999997766     88899999999999999999 999999999998 8999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCC----------------------------------------------------
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQ----------------------------------------------------  129 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~----------------------------------------------------  129 (204)
                      |+|+..|+.+++++|+++|++++.....                                                    
T Consensus       111 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            9999999999999999999987653211                                                    


Q ss_pred             -ccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhccchhhhh
Q 037875          130 -PFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERGFFKKLL  198 (204)
Q Consensus       130 -~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~~~~~~  198 (204)
                       ....+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.  +.++.+.+++.|......
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc
Confidence             00134578999999999999999999998 699999999999999999984  457888888888765443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.6e-30  Score=189.46  Aligned_cols=173  Identities=20%  Similarity=0.214  Sum_probs=145.5

Q ss_pred             ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCC
Q 037875           19 VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGE   98 (204)
Q Consensus        19 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   98 (204)
                      ..+.+|.||||+|+..|+.+++++|++.+.. .+..++..+..|.||||+|+..++ .+++++|++.|+ +++..+..|.
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~   79 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQ-PEIAEALLGAGC-DPELRDFRGN   79 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTC-HHHHHCCCSCCC-CSCCCCTTCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhc-cHHHhhccCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCCcCCCCC
Confidence            3578899999999999999999999997764 344588999999999999999999 999999999997 8999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCC-CCCCHhHH
Q 037875           99 TALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDM-DGMTALQL  177 (204)
Q Consensus        99 t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~-~g~t~l~~  177 (204)
                      ||||+|+..|+.+++++|++.+.+... ....+..+..|.||||+|+..|+.+++++|++ .|++++.++. .|.||||+
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~  157 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHL-HSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHL  157 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSS-SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhH-HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHH
Confidence            999999999999999999999876432 11234467889999999999999999999999 6999999997 99999999


Q ss_pred             hcc--CCcchhhhhhccchhh
Q 037875          178 LSC--KPEAFKLKQERGFFKK  196 (204)
Q Consensus       178 a~~--~~~~~~~~~~~g~~~~  196 (204)
                      |+.  +.++.+.+++.|....
T Consensus       158 A~~~~~~~~v~~Ll~~ga~~~  178 (236)
T 1ikn_D          158 AVDLQNPDLVSLLLKCGADVN  178 (236)
T ss_dssp             HHHTTCHHHHHHHHTTTCCSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCC
Confidence            985  4578888888876543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.8e-29  Score=171.64  Aligned_cols=150  Identities=20%  Similarity=0.219  Sum_probs=134.4

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFR  103 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~  103 (204)
                      +.++||.|+..|+.+++++|++. .   +..++..+..|.||||+ +..++ .+++++|++.+. +++.++..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~---~~~~~~~~~~g~t~L~~-~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-E---LVHPDALNRFGKTALQV-MMFGS-TAIALELLKQGA-SPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-T---CCCTTCCCTTSCCHHHH-SCTTC-HHHHHHHHHTTC-CTTCCCTTSCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-h---CcCccccCCCCCcHHHH-HHcCC-HHHHHHHHHCCC-CCCCcCCCCCCHHHH
Confidence            56899999999999999999996 2   12378889999999999 88998 899999999998 899999999999999


Q ss_pred             HHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC-
Q 037875          104 SARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP-  182 (204)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~-  182 (204)
                      |+..|+.+++++|++.|++++.       ++..|+||||+|+..|+.+++++|++ . ++++.++..|.|||++|+..+ 
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADVNV-------PDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCC-------CCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             HHHcCcHHHHHHHHHcCCCCCC-------cCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCc
Confidence            9999999999999999998876       58899999999999999999999998 4 999999999999999998554 


Q ss_pred             -cchhhhh
Q 037875          183 -EAFKLKQ  189 (204)
Q Consensus       183 -~~~~~~~  189 (204)
                       ++.+.++
T Consensus       146 ~~~v~~Ll  153 (156)
T 1bd8_A          146 QDLVDILQ  153 (156)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence             5555543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=6.3e-30  Score=175.09  Aligned_cols=145  Identities=17%  Similarity=0.020  Sum_probs=116.3

Q ss_pred             ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCC
Q 037875           19 VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGE   98 (204)
Q Consensus        19 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   98 (204)
                      ..+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+ .++ .+++++|++.++ +++.++..|.
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~-~~~-~~~v~~Ll~~g~-~~~~~d~~g~   78 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-----PNAPNSYGRRPIQVMM-MGS-ARVAELLLLHGA-EPNCADPATL   78 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCSSSCCTTTSSC-TTC-HHHHHHHHTTTC-CCCCCCTTTC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHH-cCC-HHHHHHHHHcCC-CCCCcCCCCC
Confidence            3567799999999999999999999997765     8889999999999985 788 899999999997 8999999999


Q ss_pred             c-HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHH
Q 037875           99 T-ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL  177 (204)
Q Consensus        99 t-~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~  177 (204)
                      | |||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.++..|.||.+-
T Consensus        79 ttpL~~A~~~~~~~~v~~Ll~~ga~~~~-------~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           79 TRPVHDAAREGFLDTLVVLHRAGARLDV-------RDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSC-------CCTTCCCHHHHHHHHTCHHHHHHHSS-CC----------------
T ss_pred             cHHHHHHHHCCCHHHHHHHHHcCCCCcc-------cCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCccccc
Confidence            9 99999999999999999999999887       58899999999999999999999998 699999999999999875


Q ss_pred             hc
Q 037875          178 LS  179 (204)
Q Consensus       178 a~  179 (204)
                      +.
T Consensus       151 ~~  152 (156)
T 1bi7_B          151 PS  152 (156)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=178.88  Aligned_cols=162  Identities=16%  Similarity=0.131  Sum_probs=141.4

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCc
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGET   99 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t   99 (204)
                      .+..+.++|+.|+..|+.+++++|++.|.+     ++..+..|.||||+|+..++ .+++++|++.+.......+..|.|
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYD-----VRQPDKENVTLLHWAAINNR-IDLVKYYISKGAIVDQLGGDLNST   78 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCC-----cCCCCCCCCCHHHHHHHhCC-HHHHHHHHHcCCcchhhcCCcCCC
Confidence            467789999999999999999999997766     78889999999999999999 999999999998433344556999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          100 ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      |||+|+..|+.+++++|++.|++++.       ++..|.||||+|+..|+.+++++|++ .|++++.++..|.|||++|+
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~  150 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADPSL-------IDGEGCSCIHLAAQFGHTSIVAYLIA-KGQDVDMMDQNGMTPLMWAA  150 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCCcc-------cCCCCCCHHHHHHHcCHHHHHHHHHh-cCCCccccCCCCCcHHHHHH
Confidence            99999999999999999999998876       57889999999999999999999999 69999999999999999998


Q ss_pred             cC---Ccchhhhhhccchh
Q 037875          180 CK---PEAFKLKQERGFFK  195 (204)
Q Consensus       180 ~~---~~~~~~~~~~g~~~  195 (204)
                      ..   .++.+.+...|...
T Consensus       151 ~~~~~~~~~~~L~~~~~~~  169 (240)
T 3eu9_A          151 YRTHSVDPTRLLLTFNVSV  169 (240)
T ss_dssp             HHCCSSTTHHHHHHTTCCT
T ss_pred             HhCChHHHHHHHHhcCCCc
Confidence            32   45666666666543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=2.6e-29  Score=185.07  Aligned_cols=166  Identities=15%  Similarity=0.034  Sum_probs=136.4

Q ss_pred             CCchHHHHHHhcCChH----HHHHHHhhCchhhhhhhcc----cccCCCcHHHHHHhc---CCCHHHHHHHHhhCCCccc
Q 037875           23 HDDTVLHMATYFKRDD----LALKLLDEIPELYIHKMTR----QNKAGNTVLHATATS---SRALPVADKLLRKAPGLLG   91 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~----~~~~g~~~l~~a~~~---~~~~~~~~~Ll~~~~~~~~   91 (204)
                      .|.||||+|+..|+.+    ++++|++.|.+     ++.    .+..|.||||+|+..   ++ .+++++|++.++ +++
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-----i~~~~~~~d~~g~t~L~~A~~~~~~g~-~~~v~~Ll~~g~-~~~   73 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-----LTDSAYTEGSTGKTCLMKAVLNLQDGV-NACIMPLLQIDK-DSG   73 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-----TTSGGGSBTTTTBCHHHHHHHTCBTTB-CTTHHHHHHHHH-HTT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cccccccCCCCCCCHHHHHHHccccch-HHHHHHHHhcCC-ccc
Confidence            3789999999999997    55667776655     777    799999999999999   98 899999999886 444


Q ss_pred             c-----------ccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCC------ccccCCCCccHHHHHHHhCCHHHHH
Q 037875           92 M-----------RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQ------PFLQRNDQSTVLHMAVISQHFELAL  154 (204)
Q Consensus        92 ~-----------~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~  154 (204)
                      .           .+..|.||||+|+..|+.+++++|+++|++++.....      ....+..|.||||+|+..|+.++++
T Consensus        74 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~  153 (256)
T 2etb_A           74 NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT  153 (256)
T ss_dssp             CSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHH
T ss_pred             chhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence            2           2367999999999999999999999999998873210      0001112999999999999999999


Q ss_pred             HHHHH--hchhhcccCCCCCCHhHHhcc--CCc---------chhhhhhccchh
Q 037875          155 EIAKE--YKYLIGEKDMDGMTALQLLSC--KPE---------AFKLKQERGFFK  195 (204)
Q Consensus       155 ~Ll~~--~g~~~~~~~~~g~t~l~~a~~--~~~---------~~~~~~~~g~~~  195 (204)
                      +|++.  .|++++.+|..|.||||+|+.  ++.         +.+.+++.|...
T Consensus       154 ~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            99994  599999999999999999985  443         778888887665

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.5e-28  Score=168.90  Aligned_cols=143  Identities=17%  Similarity=0.208  Sum_probs=129.6

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      .++++++|+++|.+++  +..|.||||+|+. |+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|
T Consensus        17 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~L   89 (162)
T 1ihb_A           17 DLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-----PDLKDRTGFAVIHDAARAGF-LDTLQTL   89 (162)
T ss_dssp             CHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHH
T ss_pred             CHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHHHH
Confidence            4688999999997754  6789999999999 999999999997766     88899999999999999999 9999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCC-CCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADY-DQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK  161 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g  161 (204)
                      ++.+. +++.++..|.||||+|+..|+.+++++|+++|++. +.       ++..|.||||+|+..|+.+++++|++ .|
T Consensus        90 l~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------~~~~g~t~l~~A~~~~~~~~~~~Ll~-~G  160 (162)
T 1ihb_A           90 LEFQA-DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-------RNHKGDTACDLARLYGRNEVVSLMQA-NG  160 (162)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TC
T ss_pred             HHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC-------cCCCCCcHHHHHHHcCCHHHHHHHHH-hC
Confidence            99997 89999999999999999999999999999999873 54       58899999999999999999999999 58


Q ss_pred             hh
Q 037875          162 YL  163 (204)
Q Consensus       162 ~~  163 (204)
                      +|
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            75

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.1e-28  Score=168.75  Aligned_cols=140  Identities=21%  Similarity=0.241  Sum_probs=130.1

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      .++++++|+++|.+++  +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|
T Consensus        26 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~~~~L   99 (169)
T 2y1l_E           26 RDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-----VNAVDHAGMTPLRLAALFGH-LEIVEVL   99 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHHHHHcCC-HHHHHHH
Confidence            4788999999998764  67899999999999999999999997766     88899999999999999999 9999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      ++.++ +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||+++|+..|+.+++++|++
T Consensus       100 l~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          100 LKNGA-DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-------QDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            99998 8899999999999999999999999999999998876       58899999999999999999998887

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.6e-29  Score=184.68  Aligned_cols=171  Identities=13%  Similarity=0.101  Sum_probs=126.4

Q ss_pred             HHHHHHHhhhcccccc-ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL-TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~-~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      ..+.++.++++|.+++ +..+.||||.|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|+
T Consensus        17 ~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll   90 (239)
T 1ycs_B           17 LRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD-----PSLPNDEGITALHNAVCAGH-TEIVKFLV   90 (239)
T ss_dssp             --------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-----CCCCCTTSCCHHHHHHHHTC-HHHHHHHH
T ss_pred             hHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCC-HHHHHHHH
Confidence            4567788888888765 45678999999999999999999987665     78888889999999999998 89999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCc-cHHHHH--HHhCCHHHHHHHHHHh
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS-TVLHMA--VISQHFELALEIAKEY  160 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~~Ll~~~  160 (204)
                      ++++ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|. ||+|+|  +..|+.+++++|+. .
T Consensus        91 ~~ga-~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~-~  161 (239)
T 1ycs_B           91 QFGV-NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA-------MTYSDMQTAADKCEEMEEGYTQCSQFLYG-V  161 (239)
T ss_dssp             HHTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCSSSCCCHHHHCCSSSTTCCCHHHHHHH-H
T ss_pred             HcCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce-------ecCCCCcchHHHHHHhhhccHHHHHHHHH-h
Confidence            9887 7888888999999999999999999999999888776       355555 999988  77888899988888 5


Q ss_pred             chhhccc---------CCCCCCHhHHhccCCcchhhhhh
Q 037875          161 KYLIGEK---------DMDGMTALQLLSCKPEAFKLKQE  190 (204)
Q Consensus       161 g~~~~~~---------~~~g~t~l~~a~~~~~~~~~~~~  190 (204)
                      |++++..         +..+.++++++...+++.+.+..
T Consensus       162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~  200 (239)
T 1ycs_B          162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHR  200 (239)
T ss_dssp             HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEECCC
T ss_pred             hhcccccccceEEEEeccCCCCCCcccccCCCEEEEEEe
Confidence            8887765         56688888888877776665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=3e-28  Score=173.02  Aligned_cols=162  Identities=15%  Similarity=0.200  Sum_probs=143.5

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHH
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETAL  101 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  101 (204)
                      ..+.||||.|+..|+.+.++.|+..+..    .++..+..|.||||+|+..++ .+++++|++.++ +++..+..|.|||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~----~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t~l   76 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTY----QVDEVDTEGNTPLNIAVHNND-IEIAKALIDRGA-DINLQNSISDSPY   76 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTC----CTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCTTSCCHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCC----CCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCCCCCCCCCHH
Confidence            4688999999999999999999997652    388899999999999999999 999999999998 8999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhc-ccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc-hhhcccCCCCCCHhHHhc
Q 037875          102 FRSARYGKADIFNFLAGK-IADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK-YLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g-~~~~~~~~~g~t~l~~a~  179 (204)
                      |+|+..|+.+++++|++. +.+++.       ++..|.||||+|+..|+.+++++|++. | ++++.++..|.||||+|+
T Consensus        77 ~~A~~~~~~~~~~~Ll~~~~~~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~  148 (201)
T 3hra_A           77 LYAGAQGRTEILAYMLKHATPDLNK-------HNRYGGNALIPAAEKGHIDNVKLLLED-GREDIDFQNDFGYTALIEAV  148 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTC-------CCTTSCCSHHHHHHTTCHHHHHHHHHH-CCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhccCccccc-------ccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCCCHHHHHH
Confidence            999999999999999954 556555       588999999999999999999999995 6 999999999999999998


Q ss_pred             cC-------Ccchhhhhhccchhhh
Q 037875          180 CK-------PEAFKLKQERGFFKKL  197 (204)
Q Consensus       180 ~~-------~~~~~~~~~~g~~~~~  197 (204)
                      ..       .++.+.+++.|.....
T Consensus       149 ~~~~~~~~~~~~v~~Ll~~ga~~~~  173 (201)
T 3hra_A          149 GLREGNQLYQDIVKLLMENGADQSI  173 (201)
T ss_dssp             HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred             HhccchhhHHHHHHHHHHCCCCCCc
Confidence            44       3577888888765543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.2e-28  Score=183.30  Aligned_cols=164  Identities=16%  Similarity=0.113  Sum_probs=131.5

Q ss_pred             HHHHHHHHhhhccccc-------------cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhccccc----------
Q 037875            4 KVIEVCRKISDHALHV-------------LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNK----------   60 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~-------------~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~----------   60 (204)
                      ...+++++|+++|.+.             .+..|.||||+|+..|+.+++++|++.|++     ++..+.          
T Consensus        68 g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~~~~~~~~~~  142 (273)
T 2pnn_A           68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-----VQAAANGDFFKKTKGR  142 (273)
T ss_dssp             TBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCBCSGGGSSCSSS
T ss_pred             CChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----cCcccccccccccccc
Confidence            3467899999988542             345899999999999999999999998776     666665          


Q ss_pred             ----CCCcHHHHHHhcCCCHHHHHHHHh---hCCCccccccCCCCcHHHHHHHcCC---------HHHHHHHHhcccCCC
Q 037875           61 ----AGNTVLHATATSSRALPVADKLLR---KAPGLLGMRNNNGETALFRSARYGK---------ADIFNFLAGKIADYD  124 (204)
Q Consensus        61 ----~g~~~l~~a~~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~L~~~~~~~~  124 (204)
                          .|.||||+|+..++ .+++++|++   .++ +++.++..|.||||+|+..|+         .+++++|+++|++++
T Consensus       143 ~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~ga-d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQ-LAIVKFLLQNSWQPA-DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTC-HHHHHHHHHCSSCCC-CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCCHHHHHHHcCC-HHHHHHHHhcccCCC-CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence                79999999999999 999999999   787 899999999999999999998         789999999999987


Q ss_pred             CCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch-hhcccCCCCCCHh
Q 037875          125 QPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY-LIGEKDMDGMTAL  175 (204)
Q Consensus       125 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~-~~~~~~~~g~t~l  175 (204)
                      ......+.++..|+||||+|+..|+.+++++|++ .|+ |+......+.+|-
T Consensus       221 ~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHHHH  271 (273)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTC-------------
T ss_pred             cccccccccCCCCCCHHHHHHHhChHHHHHHHHH-CCCCCchhhhhhhhhcc
Confidence            5322234468999999999999999999999999 588 8888877777664

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.2e-28  Score=164.98  Aligned_cols=131  Identities=18%  Similarity=0.085  Sum_probs=121.5

Q ss_pred             ccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCC
Q 037875           17 LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNN   96 (204)
Q Consensus        17 ~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~   96 (204)
                      ++..+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+. ++ .+++++|++.++ +++.++..
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~-~~-~~~v~~Ll~~g~-~~~~~~~~   76 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-----PNALNRFGRRPIQVMMM-GS-AQVAELLLLHGA-EPNCADPA   76 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCTTTTTSTT-SC-HHHHHHHHHHTC-CSSCCBTT
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-----cCCcCCCCCCHHHHHHc-CC-HHHHHHHHHCCC-CCCCcCCC
Confidence            456688899999999999999999999997766     88899999999999999 88 999999999998 89999999


Q ss_pred             -CCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875           97 -GETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus        97 -~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                       |.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..++.+++++|++ .|+|
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Gad  136 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDV-------CDAWGRLPVDLAEEQGHRDIARYLHA-ATGD  136 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCCCCC-------CSSSSSCHHHHHHHHTCHHHHHHHHH-HHCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-------cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence             99999999999999999999999998876       58899999999999999999999998 5775

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=9.1e-28  Score=165.94  Aligned_cols=147  Identities=13%  Similarity=0.015  Sum_probs=134.0

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      -++++++|++.+.++  .+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|
T Consensus        15 ~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~L   88 (167)
T 3v31_A           15 EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-----PQLLGKGRESALSLACSKGY-TDIVKML   88 (167)
T ss_dssp             CHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHHTC-HHHHHHH
T ss_pred             CHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCCcCCCCCcHHHHHHHcCC-HHHHHHH
Confidence            368899999998765  567899999999999999999999997766     78889999999999999999 9999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhch
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKY  162 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~  162 (204)
                      ++.++ +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||+++|+..|+.+++++|++ .+.
T Consensus        89 l~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~t~l~~A~~~~~~~~~~~L~~-~~~  159 (167)
T 3v31_A           89 LDCGV-DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI-------ETDSGYNSMDLAVALGYRSVQQVIES-HLL  159 (167)
T ss_dssp             HHHTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHHTCHHHHHHHHH-HHH
T ss_pred             HHCCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCCCHHHHHHHcCcHHHHHHHHH-HHH
Confidence            99998 8999999999999999999999999999999998876       58899999999999999999999999 476


Q ss_pred             hhcc
Q 037875          163 LIGE  166 (204)
Q Consensus       163 ~~~~  166 (204)
                      ++..
T Consensus       160 ~~~~  163 (167)
T 3v31_A          160 KLLQ  163 (167)
T ss_dssp             HHCS
T ss_pred             HHHH
Confidence            6544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=6.1e-28  Score=164.59  Aligned_cols=138  Identities=17%  Similarity=0.142  Sum_probs=127.6

Q ss_pred             HHHHHHHhhhcccccc-ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL-TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~-~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      -.+++++|+++|.+.. +..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|+
T Consensus        14 ~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll   87 (153)
T 1awc_B           14 QDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-----RDARTKVDRTPLHMAASEGH-ANIVEVLL   87 (153)
T ss_dssp             CHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCTTCCCHHHHHHHHTC-HHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCh-HHHHHHHH
Confidence            4688999999998754 66799999999999999999999997766     78899999999999999999 99999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHH
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEI  156 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  156 (204)
                      +.++ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|.||+|+|+..|+.+++++|
T Consensus        88 ~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           88 KHGA-DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-------QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-------cCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9998 8999999999999999999999999999999998876       588999999999999999999765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=183.81  Aligned_cols=154  Identities=17%  Similarity=0.124  Sum_probs=126.6

Q ss_pred             HHHhhhcccccc-----ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            9 CRKISDHALHVL-----TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         9 ~~~l~~~~~~~~-----~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      ++.|+++|.+++     +..+.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll   74 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-----PSQPNEEGITALHNAICGAN-YSIVDFLI   74 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHHHHH
Confidence            356777776653     34578899999999999999999997766     88899999999999999999 99999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHH--HHhCCHHHHHHHHHHhc
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMA--VISQHFELALEIAKEYK  161 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~~~g  161 (204)
                      +.++ +++.++..|.||||+|+..|+.+++++|++.|++++..      .+..|+||||+|  +..|+.+++++|++ .|
T Consensus        75 ~~ga-~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~------~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~g  146 (229)
T 2vge_A           75 TAGA-NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT------TLSDGATAFEKCDPYREGYADCATYLAD-VE  146 (229)
T ss_dssp             HTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC------CSSTTCCTGGGCCTTSTTHHHHHHHHHH-HH
T ss_pred             HCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc------cCCCCCCHHHHHHHHhcChHHHHHHHHH-cC
Confidence            9998 89999999999999999999999999999999998873      136899999999  99999999999999 57


Q ss_pred             hhhcccCCCCCCHhH
Q 037875          162 YLIGEKDMDGMTALQ  176 (204)
Q Consensus       162 ~~~~~~~~~g~t~l~  176 (204)
                      ++++.++..|.||++
T Consensus       147 a~~~~~~~~~~~~l~  161 (229)
T 2vge_A          147 QSMGLMNSGAVYALW  161 (229)
T ss_dssp             HHTTTSGGGEEEESS
T ss_pred             CCcccccCCchHHHH
Confidence            777655444444444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.1e-28  Score=180.25  Aligned_cols=160  Identities=13%  Similarity=0.075  Sum_probs=115.1

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHH
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETAL  101 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  101 (204)
                      ..|.||||.|+..++.+.++.|++.|++     ++. +..|.||||.|+..|+ .+++++|++.++ +++..+..|.|||
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-----~~~-~~~~~t~L~~A~~~g~-~~~v~~Ll~~g~-~~~~~d~~g~t~L   74 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-----VKF-NPLPLALLLDSSLEGE-FDLVQRIIYEVD-DPSLPNDEGITAL   74 (239)
T ss_dssp             ----------------------------------------CHHHHHHHHHHTC-HHHHHHHTSTTS-SCCCCCTTSCCHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCC-----ccc-CchhhHHHHHHHHcCC-HHHHHHHHHcCC-CCCCcCCCCCCHH
Confidence            4689999999999999999999998876     443 3678999999999999 999999999998 8999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCC-CHhHHh--
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGM-TALQLL--  178 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~-t~l~~a--  178 (204)
                      |+|+..|+.+++++|+++|++++.       ++..|+||||+|+..|+.+++++|++ .|++++.++..|. ||+++|  
T Consensus        75 ~~A~~~g~~~~v~~Ll~~ga~~~~-------~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~  146 (239)
T 1ycs_B           75 HNAVCAGHTEIVKFLVQFGVNVNA-------ADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEE  146 (239)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTC-------CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCS
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCc-------cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHH
Confidence            999999999999999999999887       58899999999999999999999999 6999999998887 999999  


Q ss_pred             ccC--Ccchhhhhhccchhhh
Q 037875          179 SCK--PEAFKLKQERGFFKKL  197 (204)
Q Consensus       179 ~~~--~~~~~~~~~~g~~~~~  197 (204)
                      +.+  .++.+.++..|.....
T Consensus       147 ~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          147 MEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             SSTTCCCHHHHHHHHHHHTTT
T ss_pred             hhhccHHHHHHHHHhhhcccc
Confidence            433  6788888887776544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.3e-27  Score=168.87  Aligned_cols=140  Identities=21%  Similarity=0.165  Sum_probs=129.7

Q ss_pred             HHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            6 IEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         6 ~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      .+++++|+++|.++  .+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|+
T Consensus        48 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll  121 (192)
T 2rfm_A           48 ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-----VNTKDFSGKTPLMWSIIFGY-SEMSYFLL  121 (192)
T ss_dssp             GGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHcCC-HHHHHHHH
Confidence            56788999998765  467799999999999999999999997766     88899999999999999999 99999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHH
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE  159 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  159 (204)
                      +.++ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|.||+++|+..|+.+++++|++.
T Consensus       122 ~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          122 EHGA-NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA-------RDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HTTC-CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------BCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-------cCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            9998 8999999999999999999999999999999998876       689999999999999999999999884

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5.5e-28  Score=168.98  Aligned_cols=152  Identities=16%  Similarity=0.082  Sum_probs=138.0

Q ss_pred             HHHHHHHhhhcc-c--cccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDHA-L--HVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~~-~--~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      -++++++|++.+ .  +..+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++
T Consensus        17 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~   90 (179)
T 3f6q_A           17 NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-----INVMNRGDDTPLHLAASHGH-RDIVQK   90 (179)
T ss_dssp             CHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTC-HHHHHH
T ss_pred             CHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCC-HHHHHH
Confidence            467888899884 3  45678899999999999999999999997766     88899999999999999999 999999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc
Q 037875           82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK  161 (204)
Q Consensus        82 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g  161 (204)
                      |++.++ +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..|.||+++|+..++.+++++|++ .|
T Consensus        91 Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~tpl~~A~~~~~~~~~~~L~~-~g  161 (179)
T 3f6q_A           91 LLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-------CNKYGEMPVDKAKAPLRELLRERAEK-MG  161 (179)
T ss_dssp             HHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB-------CCTTSCCGGGGSCHHHHHHHHHHHHH-TT
T ss_pred             HHHcCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch-------hccCCCCcHHHHHHHHHHHHHHHHHH-hh
Confidence            999998 8999999999999999999999999999999998776       68999999999999999999999988 69


Q ss_pred             hhhcccCCCC
Q 037875          162 YLIGEKDMDG  171 (204)
Q Consensus       162 ~~~~~~~~~g  171 (204)
                      ++++..+..+
T Consensus       162 ~~~~~~~~~~  171 (179)
T 3f6q_A          162 QNLNRIPYKD  171 (179)
T ss_dssp             CCCSCBCCCC
T ss_pred             cCcccCCccc
Confidence            9999876554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=3.1e-27  Score=180.55  Aligned_cols=173  Identities=16%  Similarity=0.111  Sum_probs=147.5

Q ss_pred             HHHHHHHhhhcccccc------------ccCCchHHHHHHhcCChHHHHHHHhh-CchhhhhhhcccccCCCcHHHHHHh
Q 037875            5 VIEVCRKISDHALHVL------------TVHDDTVLHMATYFKRDDLALKLLDE-IPELYIHKMTRQNKAGNTVLHATAT   71 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~------------~~~~~~~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~~~l~~a~~   71 (204)
                      ..+++++++++|.+++            +..|.||||+|+..|+.+++++|++. |++     ++.++..|.|+++.++.
T Consensus       137 ~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-----~n~~d~~g~t~l~~~~~  211 (337)
T 4g8k_A          137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-----VNACDNMGRNALIHALL  211 (337)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-----TTCCCTTSCCHHHHHHH
T ss_pred             cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-----cCccCCCCCcHHHHHHH
Confidence            4678899999987653            34589999999999999999999964 555     88999999999998776


Q ss_pred             cCCC---HHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhc-ccCCCCCCCCccccCCCCccHHHHHHHh
Q 037875           72 SSRA---LPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGK-IADYDQPSKQPFLQRNDQSTVLHMAVIS  147 (204)
Q Consensus        72 ~~~~---~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~g~t~l~~a~~~  147 (204)
                      .+..   ..++++|++.|+ +++.++..|.||||+|+..|+.++++.|++. |++++.       +|..|+||||+|+..
T Consensus       212 ~~~~~~~~~i~~lLl~~ga-d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~-------~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          212 SSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND-------TDSDGKTALLLAVEL  283 (337)
T ss_dssp             HSCTTTHHHHHHHHHHTTC-CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTC-------BCTTSCBHHHHHHHT
T ss_pred             HcCcccHHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccC-------cCCCCCCHHHHHHHc
Confidence            6541   357899999998 8999999999999999999999999999985 677665       689999999999999


Q ss_pred             CCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchhh
Q 037875          148 QHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKK  196 (204)
Q Consensus       148 ~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~  196 (204)
                      |+.+++++||+ .|++++.+     +||++|+.+  .++.+++++.|+...
T Consensus       284 g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          284 KLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             TCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             CCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            99999999999 69988754     599999854  578899999997654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=2e-27  Score=175.31  Aligned_cols=155  Identities=17%  Similarity=0.152  Sum_probs=133.0

Q ss_pred             HHHHHHHhhhccccc-------------cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccc------------
Q 037875            5 VIEVCRKISDHALHV-------------LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQN------------   59 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~-------------~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~------------   59 (204)
                      ..+++++|++.|.+.             .+..|.||||+|+..|+.+++++|++.|++     ++..+            
T Consensus        61 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~~~~~~~~~~~  135 (260)
T 3jxi_A           61 RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-----VHAQARGRFFQPKDEGG  135 (260)
T ss_dssp             BCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCEECCCSSSCCCC
T ss_pred             CHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-----cCccccccccCcccccc
Confidence            357888999987432             234799999999999999999999997776     67776            


Q ss_pred             --cCCCcHHHHHHhcCCCHHHHHHHHh---hCCCccccccCCCCcHHHHHHHcCC---------HHHHHHHHhcccCCCC
Q 037875           60 --KAGNTVLHATATSSRALPVADKLLR---KAPGLLGMRNNNGETALFRSARYGK---------ADIFNFLAGKIADYDQ  125 (204)
Q Consensus        60 --~~g~~~l~~a~~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~L~~~~~~~~~  125 (204)
                        ..|.||||+|+..++ .+++++|++   .++ +++.++..|.||||+|+..++         .+++++|+++|++++.
T Consensus       136 ~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~ga-~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~  213 (260)
T 3jxi_A          136 YFYFGELPLSLAACTNQ-PHIVHYLTENGHKQA-DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFP  213 (260)
T ss_dssp             SCCSCSSHHHHHHHTTC-HHHHHHHHHCSSCCC-CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cccCCCCHHHHHHHcCC-HHHHHHHHhccccCC-CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccc
Confidence              689999999999999 999999999   787 899999999999999999888         6899999999999864


Q ss_pred             CCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhccc
Q 037875          126 PSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEK  167 (204)
Q Consensus       126 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~  167 (204)
                      .....+.++..|+||||+|+..|+.+++++|+++ |.+....
T Consensus       214 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~  254 (260)
T 3jxi_A          214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAAA  254 (260)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHHC-
T ss_pred             ccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCCcccc
Confidence            3333345799999999999999999999999995 7776654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=9e-27  Score=153.29  Aligned_cols=126  Identities=25%  Similarity=0.342  Sum_probs=117.6

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALF  102 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  102 (204)
                      +|.||||+|+..|+.+++++|++.|.+     ++..+..|.||||+|+..++ .+++++|++.+. +++.++..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~-~~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGH-LEVVKLLLEAGA-DVNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-----CCCcCCCCCcHHHHHHHcCc-HHHHHHHHHcCC-CCcccCCCCCcHHH
Confidence            489999999999999999999997765     78889999999999999999 999999999997 88899999999999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875          103 RSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      +|+..++.+++++|+++|++++.       ++..|.||+++|+..++.+++++|++ .|+|
T Consensus        74 ~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~l~~A~~~~~~~~~~~Ll~-~Gad  126 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAGADVNA-------KDKNGRTPLHLAARNGHLEVVKLLLE-AGAY  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-HTCC
T ss_pred             HHHHcChHHHHHHHHHcCCCCcc-------cCCCCCCHHHHHHHcCcHHHHHHHHH-cCCC
Confidence            99999999999999999998776       58899999999999999999999998 5764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.8e-26  Score=157.67  Aligned_cols=138  Identities=18%  Similarity=0.276  Sum_probs=125.2

Q ss_pred             HHHHHHHhhhc---cccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDH---ALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~---~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      -+++++.|++.   ..+..+..|.||||+ +..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++
T Consensus        14 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~   86 (156)
T 1bd8_A           14 DVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-----PNVQDTSGTSPVHDAARTGF-LDTLKV   86 (156)
T ss_dssp             CHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHH
T ss_pred             CHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcCc-HHHHHH
Confidence            46788888877   234567889999999 999999999999997766     88899999999999999999 999999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        82 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      |++.|+ +++.++..|.||||+|+..|+.+++++|++. ++++.       ++..|.||||+|+..|+.+++++|++
T Consensus        87 Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-------~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           87 LVEHGA-DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR-------RDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHTTC-CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC-------CCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHcCC-CCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC-------cCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999997 8999999999999999999999999999998 77766       68899999999999999999999886

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=1e-26  Score=155.49  Aligned_cols=124  Identities=20%  Similarity=0.170  Sum_probs=115.7

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcH
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETA  100 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  100 (204)
                      ...+.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|++.++ +++..+..|.||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~d~~g~t~   83 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD-----VNAKDEYGLTPLYLATAHGH-LEIVEVLLKNGA-DVNAVDAIGFTP   83 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCTTCCCH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCcCCCCCCCH
Confidence            45689999999999999999999997766     88899999999999999999 999999999998 899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875          101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus       101 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      ||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..|+.+++++|++
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~~~~~-------~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGADVNA-------QDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcC-------cCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999998876       58899999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=5.8e-27  Score=161.57  Aligned_cols=142  Identities=20%  Similarity=0.236  Sum_probs=125.2

Q ss_pred             HHHHHHHhhhcc-ccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDHA-LHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~~-~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      -+++++.|++.+ .+.  .+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++
T Consensus        20 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~   93 (165)
T 3twr_A           20 DVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-----VHAKDKGGLVPLHNACSYGH-YEVAEL   93 (165)
T ss_dssp             CHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHH
T ss_pred             CHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-----CCccCCCCCCHHHHHHHcCc-HHHHHH
Confidence            367888888854 333  456688999999999999999999997766     88999999999999999999 999999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc
Q 037875           82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK  161 (204)
Q Consensus        82 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g  161 (204)
                      |++.++ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|.||+|+|+. ++.+++++|+. .|
T Consensus        94 Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~t~l~~a~~-~~~~i~~~L~~-~g  163 (165)
T 3twr_A           94 LVKHGA-VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK-------KNRDGNTPLDLVKD-GDTDIQDLLRG-DA  163 (165)
T ss_dssp             HHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCTGGGSCT-TCHHHHHHHHT-C-
T ss_pred             HHhCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-------cCCCCCChhHhHhc-CChHHHHHHhh-cc
Confidence            999998 8999999999999999999999999999999998876       68999999999776 89999998887 45


Q ss_pred             h
Q 037875          162 Y  162 (204)
Q Consensus       162 ~  162 (204)
                      +
T Consensus       164 A  164 (165)
T 3twr_A          164 A  164 (165)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.1e-27  Score=168.52  Aligned_cols=151  Identities=17%  Similarity=0.135  Sum_probs=123.7

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccc-cCCCcHHHHHHhcCCC---HHHHHHHHhhCCCccccccCCCCc
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQN-KAGNTVLHATATSSRA---LPVADKLLRKAPGLLGMRNNNGET   99 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~-~~g~~~l~~a~~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~t   99 (204)
                      +.++|+.|+..|+.+.++.++..+       ++..+ ..|.||||+|+..++.   .+++++|++.|+ +++.++..|+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~-------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga-dvn~~d~~g~T   77 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG-------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA-DIKSRTKEGTT   77 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS-------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC-CSSCCCTTCCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC-------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC-CCCCCCCCCCc
Confidence            567899999999999999998865       33444 6799999999998872   248999999998 89999999999


Q ss_pred             HHHHHHHcCC------HHHHHHHHhcccCCCCCCCCccccCCCCc-cHHHHHHHhC-----CHHHHHHHHHHhchhhccc
Q 037875          100 ALFRSARYGK------ADIFNFLAGKIADYDQPSKQPFLQRNDQS-TVLHMAVISQ-----HFELALEIAKEYKYLIGEK  167 (204)
Q Consensus       100 ~l~~a~~~~~------~~~~~~L~~~~~~~~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~~~Ll~~~g~~~~~~  167 (204)
                      |||+|+..++      .+++++|+++|++++.       +|..|+ ||||+|+..+     ..++++.|+...|++++.+
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~-------~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~  150 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADITA-------LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK  150 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS-------CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc-------cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc
Confidence            9999999887      4679999999999887       588898 9999999844     3568888877359999999


Q ss_pred             CCCCCCHhHHhccCC--cchhhhh
Q 037875          168 DMDGMTALQLLSCKP--EAFKLKQ  189 (204)
Q Consensus       168 ~~~g~t~l~~a~~~~--~~~~~~~  189 (204)
                      |..|.||||+|+..+  ++.+.+.
T Consensus       151 d~~G~TpL~~A~~~~~~~~v~~L~  174 (186)
T 3t8k_A          151 DKWGLTALEFVKRCQKPIALKMME  174 (186)
T ss_dssp             CTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999998654  4444443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=6.5e-27  Score=156.47  Aligned_cols=129  Identities=12%  Similarity=0.055  Sum_probs=118.9

Q ss_pred             hhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCcccc
Q 037875           54 KMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQ  133 (204)
Q Consensus        54 ~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  133 (204)
                      .++..+..|.||||+|+..++ .+++++|++.+. +++.++..|.||||+|+. ++.+++++|+++|++++.       +
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-------~   73 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQ-VETVRQLLEAGA-DPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC-------A   73 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-------C
T ss_pred             CccCCCCCCccHHHHHHHcCC-HHHHHHHHHcCC-CcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-------c
Confidence            478899999999999999999 999999999997 899999999999999999 999999999999998877       5


Q ss_pred             CCC-CccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc--cCCcchhhhhhccc
Q 037875          134 RND-QSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS--CKPEAFKLKQERGF  193 (204)
Q Consensus       134 ~~~-g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~  193 (204)
                      +.. |+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+  .+.++.+.+++.|+
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           74 DPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            788 9999999999999999999999 69999999999999999998  45577788877765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.94  E-value=6.7e-27  Score=178.19  Aligned_cols=180  Identities=14%  Similarity=0.116  Sum_probs=144.3

Q ss_pred             HHHHHHHHhhhcccccccc----------------C---CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcc-cccCCC
Q 037875            4 KVIEVCRKISDHALHVLTV----------------H---DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTR-QNKAGN   63 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~----------------~---~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-~~~~g~   63 (204)
                      ..+++++.|+++|++....                .   ..+.+|+|+..+..++++.|++.|.+     ++. .+..|.
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~d-----vn~~~d~~g~  132 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-----LNIPVDEHGN  132 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCC-----SCSCCSTTCC
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCC-----cccccCCCCC
Confidence            3578999999999775431                1   12234777777888899999996666     888 899999


Q ss_pred             cHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC---HHHHHHHHhcc-cCCCCCCCCccccCCCCcc
Q 037875           64 TVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGK---ADIFNFLAGKI-ADYDQPSKQPFLQRNDQST  139 (204)
Q Consensus        64 ~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~L~~~~-~~~~~~~~~~~~~~~~g~t  139 (204)
                      ||||+|+..|+ .+++++|+++|+ +++.++..|.||||+|+..|+   .++++.|++.+ .+++       .++..|+|
T Consensus       133 TpLh~Aa~~g~-~~~v~~Ll~~Ga-d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~-------~~d~~g~t  203 (327)
T 1sw6_A          133 TPLHWLTSIAN-LELVKHLVKHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI-------LEDSMNRT  203 (327)
T ss_dssp             CHHHHHHHTTC-HHHHHHHHHTTC-CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG-------EECTTCCC
T ss_pred             cHHHHHHHcCC-HHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc-------CCCCCCCC
Confidence            99999999999 999999999998 899999999999999999998   67778888876 4444       47899999


Q ss_pred             HHHHHHH----hCCHHHHHHHHHHhch---------------------------------------------hhcccCCC
Q 037875          140 VLHMAVI----SQHFELALEIAKEYKY---------------------------------------------LIGEKDMD  170 (204)
Q Consensus       140 ~l~~a~~----~~~~~~~~~Ll~~~g~---------------------------------------------~~~~~~~~  170 (204)
                      |||+|+.    .|+.++++.|++. +.                                             +++.+|..
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~-~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~  282 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDI-LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  282 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHH-HHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             HHHHHHHHccccccHHHHHHHHHH-HHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCC
Confidence            9999999    8999999999884 43                                             58888999


Q ss_pred             CCCHhHHhcc--CCcchhhhhhccchhhhh
Q 037875          171 GMTALQLLSC--KPEAFKLKQERGFFKKLL  198 (204)
Q Consensus       171 g~t~l~~a~~--~~~~~~~~~~~g~~~~~~  198 (204)
                      |.||||+|+.  +.++.+.+++.|+.....
T Consensus       283 G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          283 GDTCLNIAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            9999999984  568888888888775543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.3e-26  Score=162.97  Aligned_cols=148  Identities=11%  Similarity=0.056  Sum_probs=127.4

Q ss_pred             HHHHHhhhccccccc-cCCchHHHHHHhcCCh----HHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCC-----H
Q 037875            7 EVCRKISDHALHVLT-VHDDTVLHMATYFKRD----DLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRA-----L   76 (204)
Q Consensus         7 ~~~~~l~~~~~~~~~-~~~~~~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~-----~   76 (204)
                      +.+..++..+.+..+ ..|.||||+|+..++.    +++++|++.|++     ++.++..|.||||+|+..++.     .
T Consensus        20 ~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-----vn~~d~~g~TpLh~a~~~~~~~~~~~~   94 (186)
T 3t8k_A           20 EDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-----IKSRTKEGTTLFFPLFQGGGNDITGTT   94 (186)
T ss_dssp             HHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-----SSCCCTTCCCTHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHcCCcchhhHH
Confidence            456677777777665 7799999999999975    489999997776     899999999999999998862     4


Q ss_pred             HHHHHHHhhCCCccccccCCCC-cHHHHHHHcCC-----HHHHHHHHh-cccCCCCCCCCccccCCCCccHHHHHHHhCC
Q 037875           77 PVADKLLRKAPGLLGMRNNNGE-TALFRSARYGK-----ADIFNFLAG-KIADYDQPSKQPFLQRNDQSTVLHMAVISQH  149 (204)
Q Consensus        77 ~~~~~Ll~~~~~~~~~~~~~~~-t~l~~a~~~~~-----~~~~~~L~~-~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  149 (204)
                      +++++|+++|+ +++.++..|. ||||+|+..+.     .+++++|++ .|++++.       +|..|.||||+|+..|+
T Consensus        95 ~iv~~Ll~~Ga-din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~-------~d~~G~TpL~~A~~~~~  166 (186)
T 3t8k_A           95 ELCKIFLEKGA-DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI-------KDKWGLTALEFVKRCQK  166 (186)
T ss_dssp             HHHHHHHHTTC-CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC-------CCTTSCCHHHHHHTTTC
T ss_pred             HHHHHHHHCCC-CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc-------cCCCCCCHHHHHHHcCC
Confidence            68999999998 9999999999 99999999543     568999999 9999887       68999999999999999


Q ss_pred             HHHHHHHHHHhchhhcccC
Q 037875          150 FELALEIAKEYKYLIGEKD  168 (204)
Q Consensus       150 ~~~~~~Ll~~~g~~~~~~~  168 (204)
                      .++++.|+. +....+.++
T Consensus       167 ~~~v~~L~~-~~~~~~~~~  184 (186)
T 3t8k_A          167 PIALKMMED-YIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHHH-HHHHHTCCC
T ss_pred             HHHHHHHHH-HHHHHhccc
Confidence            999988887 566666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1e-28  Score=179.22  Aligned_cols=160  Identities=16%  Similarity=0.044  Sum_probs=138.9

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      ..+++++|++.|.++  .+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|
T Consensus        33 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-----~n~~d~~g~tpLh~A~~~g~-~~~v~~L  106 (229)
T 2vge_A           33 ELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-----VNSPDSHGWTPLHCAASCND-TVICMAL  106 (229)
T ss_dssp             CHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTC-HHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHHHH
Confidence            468899999998776  467899999999999999999999997766     88999999999999999999 9999999


Q ss_pred             HhhCCCcccccc-CCCCcHHHHH--HHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHH
Q 037875           83 LRKAPGLLGMRN-NNGETALFRS--ARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE  159 (204)
Q Consensus        83 l~~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  159 (204)
                      ++.++ +++..+ ..|.||||+|  +..|+.+++++|++.|++++.       ++..+.|+++.++.....   +.|+. 
T Consensus       107 l~~ga-~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~-------~~~~~~~~l~~~~~~~~~---~~ll~-  174 (229)
T 2vge_A          107 VQHGA-AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL-------MNSGAVYALWDYSAEFGD---ELSFR-  174 (229)
T ss_dssp             HTTTC-CTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT-------SGGGEEEESSCBCCSSTT---BCCBC-
T ss_pred             HHcCC-CcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc-------ccCCchHHHHHHhhcccc---ccCcc-
Confidence            99998 788775 6999999999  999999999999999999887       577888888865554433   35555 


Q ss_pred             hchh--hcccCCCCCCHhHHhccCC
Q 037875          160 YKYL--IGEKDMDGMTALQLLSCKP  182 (204)
Q Consensus       160 ~g~~--~~~~~~~g~t~l~~a~~~~  182 (204)
                      .|++  ++.+|..|.|||++|+.++
T Consensus       175 ~ga~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          175 EGESVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             TTCEEEEEESSCTTCSSEEEEEETT
T ss_pred             ccccccccccCCCcccHHHHHHHcC
Confidence            5888  7788999999999998665

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=9.4e-26  Score=168.01  Aligned_cols=143  Identities=20%  Similarity=0.237  Sum_probs=129.8

Q ss_pred             HHHHHHHhhhccc-cc--cccCCchHHHHHH-----hcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCH
Q 037875            5 VIEVCRKISDHAL-HV--LTVHDDTVLHMAT-----YFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRAL   76 (204)
Q Consensus         5 ~~~~~~~l~~~~~-~~--~~~~~~~~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~   76 (204)
                      ..+++++|++.|. ++  .+..|.||||+|+     ..++.+++++|++.|..     .+..+..|.||||+|+..|+ .
T Consensus       123 ~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~tpLh~A~~~g~-~  196 (276)
T 4hbd_A          123 NFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-----NAKASQAGQTALMLAVSHGR-V  196 (276)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-----TCCCTTTCCCHHHHHHHTTC-H
T ss_pred             CHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-----ccccCCCCCCHHHHHHHcCC-H
Confidence            4688999999987 44  5778999999999     66889999999997755     77788899999999999999 9


Q ss_pred             HHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHh-cccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHH
Q 037875           77 PVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAG-KIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALE  155 (204)
Q Consensus        77 ~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  155 (204)
                      +++++|++.|+ +++.++..|.||||+|+..|+.+++++|++ .|++++.       +|..|.||||+|+..|+.+++++
T Consensus       197 ~~v~~Ll~~ga-d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~-------~d~~g~TpL~~A~~~g~~~iv~~  268 (276)
T 4hbd_A          197 DVVKALLACEA-DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL-------TDRDGSTALMVALDAGQSEIASM  268 (276)
T ss_dssp             HHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTC-------CCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcC-------cCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999998 899999999999999999999999999999 8888876       68999999999999999999999


Q ss_pred             HHHHhc
Q 037875          156 IAKEYK  161 (204)
Q Consensus       156 Ll~~~g  161 (204)
                      |+++.+
T Consensus       269 Ll~~~~  274 (276)
T 4hbd_A          269 LYSRMN  274 (276)
T ss_dssp             HHHHCC
T ss_pred             HHhccC
Confidence            998643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=1.7e-25  Score=168.44  Aligned_cols=139  Identities=18%  Similarity=0.146  Sum_probs=121.2

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcc------cccCCCcHHHHHHhc---CCCHHHHHHHHhhCCCccccc
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTR------QNKAGNTVLHATATS---SRALPVADKLLRKAPGLLGMR   93 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~------~~~~g~~~l~~a~~~---~~~~~~~~~Ll~~~~~~~~~~   93 (204)
                      ...++|+.|+..|+.+.++.|++.|++     ++.      .+..|.||||+|+..   ++ .+++++|++.++ +++.+
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d-----~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~-~~iv~~Ll~~ga-dvn~~  222 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQD-----FGQPLPGPDAQAPEELVLHLAVKVANQAS-LPLVDFIIQNGG-HLDAK  222 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCC-----TTSCEECSSSCSCEECHHHHHHHTCCTTT-HHHHHHHHHHSS-CTTCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCc-----ccccCCCcccCCCCccHHHHHHHhcccCc-HHHHHHHHhcCC-CCCCC
Confidence            356789999999999999999998776     555      588999999999997   67 899999999998 89999


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCC
Q 037875           94 NNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMT  173 (204)
Q Consensus        94 ~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t  173 (204)
                      +..|.||||+|+..|+.+++++|+++|++++.       +|..|.||||+|+..++.+++++|++ .|++      .|.|
T Consensus       223 d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-------~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~t  288 (301)
T 2b0o_E          223 AADGNTALHYAALYNQPDCLKLLLKGRALVGT-------VNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAF  288 (301)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSC-------CCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCC
Confidence            99999999999999999999999999999887       68999999999999999999999998 5877      6899


Q ss_pred             HhHHhccCC
Q 037875          174 ALQLLSCKP  182 (204)
Q Consensus       174 ~l~~a~~~~  182 (204)
                      |||+|+..+
T Consensus       289 pLh~A~~~g  297 (301)
T 2b0o_E          289 PLHVDYSWV  297 (301)
T ss_dssp             CCC------
T ss_pred             hhHHHHhcC
Confidence            999998654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.1e-25  Score=150.58  Aligned_cols=114  Identities=18%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             ccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCC
Q 037875           57 RQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRND  136 (204)
Q Consensus        57 ~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  136 (204)
                      .++..|.||||+|+..++ .+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.       ++..
T Consensus         5 ~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~   75 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGD-IPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-------TGYQ   75 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTC-HHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCGG
T ss_pred             CcCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-------cCCC
Confidence            455666677777777666 666777766665 5666666667777777777777777777776666554       4566


Q ss_pred             CccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc
Q 037875          137 QSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC  180 (204)
Q Consensus       137 g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~  180 (204)
                      |.||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+.
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           76 NDSPLHDAAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhh
Confidence            6777777777777777776666 477777777777777777653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=5.4e-26  Score=164.05  Aligned_cols=137  Identities=22%  Similarity=0.169  Sum_probs=106.3

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhh-CCCccccccCCCCc
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK-APGLLGMRNNNGET   99 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~t   99 (204)
                      +..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|+.. +. +++.++..|.|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~g~-~~~~~d~~g~t  142 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-----VNGLDKAGSTALYWACHGGH-KDIVEMLFTQPNI-ELNQQNKLGDT  142 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHTTSTTC-CCCCCCTTSCC
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC-----ccccCCCCCCHHHHHHHcCC-HHHHHHHHcCCCC-CccccCCCCCC
Confidence            45678999999999999999999997665     78888899999999999998 8999999988 65 88889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCC
Q 037875          100 ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGM  172 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~  172 (204)
                      |||+|+..|+.+++++|+++|++++.       ++..|.|||++|+..+..++++.|+. .+++.+..+.+|.
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~~  207 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGARTDL-------RNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSCC-------CCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcc-------ccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhhh
Confidence            99999999999999999999888776       58889999999999999999988888 5888877665543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=3.7e-26  Score=152.89  Aligned_cols=126  Identities=21%  Similarity=0.185  Sum_probs=114.4

Q ss_pred             ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCC
Q 037875           19 VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGE   98 (204)
Q Consensus        19 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   98 (204)
                      ..+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|++.+. +++.++..|.
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~-~~~~~~~~g~   77 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-----PNVKDHAGWTPLHEACNHGH-LKVVELLLQHKA-LVNTTGYQND   77 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCGGGC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-cccCcCCCCC
Confidence            3577899999999999999999999997766     88899999999999999999 999999999998 8999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           99 TALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        99 t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      ||||+|+..|+.+++++|+++|++++.       ++..|.||+++|+..+..+++.+|..
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASRNA-------VNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHhhccHHHHHhhccc
Confidence            999999999999999999999998876       68999999999999888888765544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.9e-25  Score=148.40  Aligned_cols=125  Identities=19%  Similarity=0.177  Sum_probs=111.8

Q ss_pred             cccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCC
Q 037875           58 QNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ  137 (204)
Q Consensus        58 ~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g  137 (204)
                      ....+.||||+|+..|+ .+++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++.       ++..|
T Consensus        10 ~~~~~~t~l~~A~~~g~-~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~d~~g   80 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQ-DDEVRILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-------VDAIG   80 (136)
T ss_dssp             --CHHHHHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTC
T ss_pred             ccccccHHHHHHHHhCC-HHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-------CCCCC
Confidence            44568899999999999 999999999997 8899999999999999999999999999999998876       58899


Q ss_pred             ccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhcc
Q 037875          138 STVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERG  192 (204)
Q Consensus       138 ~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g  192 (204)
                      .||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..  .++.+.+++.|
T Consensus        81 ~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           81 FTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999 6999999999999999999854  46667766654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.9e-24  Score=142.12  Aligned_cols=123  Identities=29%  Similarity=0.376  Sum_probs=113.1

Q ss_pred             CCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccH
Q 037875           61 AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTV  140 (204)
Q Consensus        61 ~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~  140 (204)
                      +|.||||+|+..++ .+++++|++.+. +++..+..|.||||+|+..++.+++++|++.|++++.       ++..|.||
T Consensus         1 ~g~t~L~~A~~~~~-~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~~~~g~t~   71 (126)
T 1n0r_A            1 NGRTPLHLAARNGH-LEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-------KDKNGRTP   71 (126)
T ss_dssp             CCCCHHHHHHHHTC-HHHHHHHHHHTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCH
T ss_pred             CCccHHHHHHHcCc-HHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-------cCCCCCcH
Confidence            48899999999999 999999999987 7888999999999999999999999999999998776       58899999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhccc
Q 037875          141 LHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERGF  193 (204)
Q Consensus       141 l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~  193 (204)
                      ||+|+..++.+++++|++ .|++++.++..|.||+++|+.  +.++++.+++.|+
T Consensus        72 l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           72 LHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999999999 699999999999999999985  4577888887775

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=6e-25  Score=144.36  Aligned_cols=113  Identities=19%  Similarity=0.132  Sum_probs=102.6

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcH
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETA  100 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  100 (204)
                      +..|.+|||+|+..|+.+++++|++.|.+     ++..+..|.||||+|+..++ .+++++|++.++ +++.++..|.||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-----~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-----VNRTLEGGRKPLHYAADCGQ-LEILEFLLLKGA-DINAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-----TTSCCTTSSCHHHHHHHTTC-HHHHHHHHTTTC-CTTCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-----cCccCCCCCcHHHHHHHcCC-HHHHHHHHHcCC-CCCcCCCCCCCH
Confidence            45688999999999999999999997766     88899999999999999999 999999999997 899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHh
Q 037875          101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVIS  147 (204)
Q Consensus       101 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  147 (204)
                      ||+|+..++.+++++|+++|++++.       ++..|.||+|+|...
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADKTV-------KGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHCCCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC-------cCCCCCCHHHHhCCH
Confidence            9999999999999999999998876       689999999999544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1.8e-24  Score=142.05  Aligned_cols=111  Identities=20%  Similarity=0.161  Sum_probs=102.7

Q ss_pred             ccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCc
Q 037875           59 NKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQS  138 (204)
Q Consensus        59 ~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~  138 (204)
                      +..|.||||+|+..++ .+++++|++.+. +++..+..|.||||+|+..++.+++++|++.|++++.       ++..|+
T Consensus         4 ~~~~~~~l~~A~~~~~-~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------~d~~g~   74 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGD-LDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-------PDKHHI   74 (123)
T ss_dssp             ---CHHHHHHHHHTTC-HHHHHHHHHTTC-CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-------CCTTSC
T ss_pred             ccccchHHHHHHHcCC-HHHHHHHHHcCC-CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-------CCCCCC
Confidence            4577899999999999 999999999997 8899999999999999999999999999999998876       588999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          139 TVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       139 t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      ||||+|+..++.+++++|++ .|++++.+|..|.||+++|.
T Consensus        75 tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           75 TPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred             CHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence            99999999999999999999 69999999999999999994

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=9e-25  Score=149.36  Aligned_cols=132  Identities=13%  Similarity=0.062  Sum_probs=113.3

Q ss_pred             hcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccC
Q 037875           55 MTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQR  134 (204)
Q Consensus        55 ~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  134 (204)
                      .+..+..|.||||+|+..|+ .+++++|++.+. +++..+..|.||||+|+ .|+.+++++|++.|++++.       ++
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~-~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-------~d   74 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGR-VEEVRALLEAGA-NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-------AD   74 (156)
T ss_dssp             -----CCSTTHHHHHHHHTC-HHHHHHHHTTTC-CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-------CC
T ss_pred             ccCCCccchHHHHHHHHcCC-HHHHHHHHHcCC-CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-------cC
Confidence            34567789999999999999 999999999987 89999999999999985 8999999999999998887       58


Q ss_pred             CCCcc-HHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc--cCCcchhhhhhccchhhh
Q 037875          135 NDQST-VLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS--CKPEAFKLKQERGFFKKL  197 (204)
Q Consensus       135 ~~g~t-~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~~~  197 (204)
                      ..|.| |||+|+..|+.+++++|++ .|++++.++..|.||||+|+  .+.++.+.+++.|.....
T Consensus        75 ~~g~ttpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           75 PATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred             CCCCcHHHHHHHHCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence            88999 9999999999999999999 59999999999999999998  456788888888876544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=6.1e-25  Score=154.05  Aligned_cols=112  Identities=21%  Similarity=0.160  Sum_probs=92.2

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccccc-CCCCc
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRN-NNGET   99 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~t   99 (204)
                      +..|.||||+|+..|+.++++.|++ |.+     ++.++..|.||||+|+..++ .+++++|++.++ +++..+ ..|.|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----~~~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~ga-~~~~~~~~~g~t  112 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-----VDAVDENGRTALLFVAGLGS-DKCVRLLAEAGA-DLDHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCSSSSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-----CCCcCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCcCCCCCCCC
Confidence            3467888888888888888888888 665     77788888888888888888 788888888887 777776 77888


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHh
Q 037875          100 ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVIS  147 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  147 (204)
                      |||+|+..|+.+++++|+++|++++.       ++..|+||||+|+..
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~~~-------~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADIEV-------EDERGLTALELAREI  153 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTC-------CCTTSCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcC-------CCCCCCCHHHHHHHh
Confidence            88888888888888888888887776       578888888888753

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=1.9e-23  Score=160.89  Aligned_cols=144  Identities=14%  Similarity=0.166  Sum_probs=115.5

Q ss_pred             ccCCchHHHHHHhc-CChHHHHHHHhhCchhhhhhhcccc--cCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCC
Q 037875           21 TVHDDTVLHMATYF-KRDDLALKLLDEIPELYIHKMTRQN--KAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNG   97 (204)
Q Consensus        21 ~~~~~~~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~~~--~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   97 (204)
                      ...+.++||.|+.. ++.++++.|++.|++     ++..+  ..|.||||+|+..++ .+++++|++.++ +++..+..|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-----vn~~~~~~~g~TpLh~Aa~~g~-~~iv~~LL~~Ga-dvn~~d~~G  268 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGAD-----VNWVNGGQDNATPLIQATAANS-LLACEFLLQNGA-NVNQADSAG  268 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-----TTCCCTTTTCCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTS
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCC-----CCccccccCCCCHHHHHHHCCC-HHHHHHHHHcCC-CCCCCCCCC
Confidence            34567899999999 999999999997776     77777  889999999999999 999999999998 899999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc---hhhcccCCCCCCH
Q 037875           98 ETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK---YLIGEKDMDGMTA  174 (204)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g---~~~~~~~~~g~t~  174 (204)
                      .||||+|+..|+.+++++|+++|++++.       +|..|.||||+|+..++.+++++|+.. +   .+....+..+.|+
T Consensus       269 ~TpLh~A~~~g~~~~v~~LL~~Gad~~~-------~d~~G~TpL~~A~~~g~~~iv~lLl~~-~~~~~~~~~~~~~~~t~  340 (368)
T 3jue_A          269 RGPLHHATILGHTGLACLFLKRGADLGA-------RDSEGRDPLTIAMETANADIVTLLRLA-KMREAEAAQGQAGDETY  340 (368)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHHH-HC---------------
T ss_pred             CCHHHHHHHcCcHHHHHHHHHCcCCCCC-------cCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCcccccccCCCCCCH
Confidence            9999999999999999999999999887       689999999999999999999999884 4   3444556778888


Q ss_pred             hHHhc
Q 037875          175 LQLLS  179 (204)
Q Consensus       175 l~~a~  179 (204)
                      ++++.
T Consensus       341 l~i~~  345 (368)
T 3jue_A          341 LDIFR  345 (368)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            88775

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=3.4e-24  Score=154.59  Aligned_cols=134  Identities=19%  Similarity=0.191  Sum_probs=111.4

Q ss_pred             hcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhc-ccCCCCCCCCcccc
Q 037875           55 MTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGK-IADYDQPSKQPFLQ  133 (204)
Q Consensus        55 ~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~  133 (204)
                      ++..+..|.||||+|+..|+ .+++++|++.+. +++..+..|.||||+|+..|+.+++++|++. |++++.       +
T Consensus        66 v~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~-------~  136 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGN-LSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-------Q  136 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC-------C
T ss_pred             ccccccccccccccccccCc-HHHHHHHHhCCC-CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc-------c
Confidence            44556788999999999999 999999999997 8999999999999999999999999999998 888776       6


Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchhhhh
Q 037875          134 RNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKKLL  198 (204)
Q Consensus       134 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~~~  198 (204)
                      +..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..  .++++.+...|..+.+.
T Consensus       137 d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          137 NKLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence            8999999999999999999999999 5999999999999999999854  46666677777666543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=8.3e-24  Score=154.81  Aligned_cols=110  Identities=21%  Similarity=0.168  Sum_probs=101.3

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccccc-CCCCcH
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRN-NNGETA  100 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~t~  100 (204)
                      ..|.||||+|+..|+.+++++|++ |.+     ++.++..|.||||+|+..|+ .+++++|++.++ +++..+ ..|.||
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~ga-~~~~~~~~~g~t~  114 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRD-----VDAVDENGRTALLFVAGLGS-DKCVRLLAEAGA-DLDHRDMRGGLTA  114 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCC-----TTCBCTTSCBHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCSSSCCCH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHCCC-HHHHHHHHHcCC-CCCcCCCCCCCCH
Confidence            468999999999999999999999 766     88899999999999999999 899999999998 888887 889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHH
Q 037875          101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVI  146 (204)
Q Consensus       101 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~  146 (204)
                      ||+|+..|+.+++++|+++|++++.       ++..|.||||+|+.
T Consensus       115 L~~A~~~g~~~~v~~Ll~~ga~~~~-------~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          115 LHMAAGYVRPEVVEALVELGADIEV-------EDERGLTALELARE  153 (244)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCC-------CCCCCCcHHHHHHH
Confidence            9999999999999999999999886       57889999888873

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=3.1e-25  Score=171.41  Aligned_cols=154  Identities=11%  Similarity=-0.024  Sum_probs=119.4

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCc---cccccCCCCc
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGL---LGMRNNNGET   99 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~---~~~~~~~~~t   99 (204)
                      ++.||||+|+..|+.+++++|++.|+...  ..+..+..|.||||+|+..|+ .+++++|+++++ +   .+..+.+ .|
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~--~~~~~~~~~~tpL~~Aa~~G~-~eiv~~Ll~~ga-d~~~~~i~~~~-~T  165 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDE--IVKVIQAENYQAFRLAAENGH-LHVLNRLCELAP-TEIMAMIQAEN-YH  165 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCS--SCC--CHHHHHHHHHHHHTTC-HHHHHHHHHSCT-TTHHHHHSHHH-HH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHH--HHHHhccCCCCHHHHHHHcCC-HHHHHHHHhCCC-CccccccCCCC-CC
Confidence            35699999999999999999999776210  012334567789999999999 999999999986 3   2222333 89


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHH-HhCCHHHHHHHHHHhchhhcccCCCCCCHhHHh
Q 037875          100 ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV-ISQHFELALEIAKEYKYLIGEKDMDGMTALQLL  178 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a  178 (204)
                      |||+|+..|+.+++++|+++|++++.     +..+..|.||||+|+ ..|+.+++++|++ .|++       |.||+++|
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~-----~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~-~ga~-------~~taL~~A  232 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTEAT-----AMIQAENYYAFRWAAVGRGHHNVINFLLD-CPVM-------LAYAEIHE  232 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHHH-------HHHHHHCT
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccch-----hccCCCCCCHHHHHHHHCCCHHHHHHHHh-CCCc-------cchHHHHH
Confidence            99999999999999999999887542     013667899999999 9999999999998 5754       78999999


Q ss_pred             ccC--Ccchhhhhhccch
Q 037875          179 SCK--PEAFKLKQERGFF  194 (204)
Q Consensus       179 ~~~--~~~~~~~~~~g~~  194 (204)
                      +.+  .++.+++.+.|..
T Consensus       233 a~~g~~evv~lL~~~ga~  250 (376)
T 2aja_A          233 FEYGEKYVNPFIARHVNR  250 (376)
T ss_dssp             TTTTTTTHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCcc
Confidence            855  4677777777654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=2.6e-22  Score=149.51  Aligned_cols=130  Identities=18%  Similarity=0.106  Sum_probs=114.4

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhh-hcccccCCCcHHHHHHhc---CCCHHHHHHHHhhCCCccccccCCCCc
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHK-MTRQNKAGNTVLHATATS---SRALPVADKLLRKAPGLLGMRNNNGET   99 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~~~~g~~~l~~a~~~---~~~~~~~~~Ll~~~~~~~~~~~~~~~t   99 (204)
                      ..++|+.|+..|+.+.++.+++.|.+..... ++..+..|.||||+|+..   ++ .+++++|++.|+ +++.++..|.|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~-~~~v~~Ll~~ga-~in~~d~~g~T  207 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS-LHIVDFLVQNSG-NLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT-HHHHHHHHHHCS-CTTCCCTTCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccch-HHHHHHHHHCCC-CccccCCCCCC
Confidence            3578999999999999999999887743322 455578899999999999   77 899999999998 89999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchh
Q 037875          100 ALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      |||+|+..|+.+++++|+++|++++.       +|..|.||||+|+..|+.++++.|++ .|++
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~~~-------~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~  263 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASIEI-------ANESGETPLDIAKRLKHEHCEELLTQ-ALSG  263 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-HHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC-------ccCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            99999999999999999999999887       68999999999999999999999988 4764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3.7e-23  Score=144.94  Aligned_cols=111  Identities=26%  Similarity=0.222  Sum_probs=103.7

Q ss_pred             ccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccC-CCC
Q 037875           59 NKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQR-NDQ  137 (204)
Q Consensus        59 ~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~-~~g  137 (204)
                      +..|.||||+|+..|+ .+++++|+. +. +++..+..|.||||+|+..|+.+++++|+++|++++.       ++ ..|
T Consensus        41 ~~~g~t~L~~A~~~g~-~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~~~~~g  110 (183)
T 3deo_A           41 VSEYETPWWTAARKAD-EQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH-------RDMRGG  110 (183)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------CCSSSS
T ss_pred             CCCCCCHHHHHHHcCC-HHHHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-------CCCCCC
Confidence            4578999999999999 999999999 76 8999999999999999999999999999999999876       35 789


Q ss_pred             ccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc
Q 037875          138 STVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC  180 (204)
Q Consensus       138 ~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~  180 (204)
                      +||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+.
T Consensus       111 ~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          111 LTALHMAAGYVRPEVVEALVE-LGADIEVEDERGLTALELARE  152 (183)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHhcCcHHHHHHHHH-cCCCCcCCCCCCCCHHHHHHH
Confidence            999999999999999999999 599999999999999999974

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.9e-22  Score=125.95  Aligned_cols=93  Identities=27%  Similarity=0.352  Sum_probs=79.1

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALF  102 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  102 (204)
                      +|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|++.++ +++.++..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~n~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~ga-~~~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGH-LEVVKLLLEAGA-DVNAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCccCCCCCCHHH
Confidence            478899999999999999999986665     78888889999999999888 889999998887 78888888899999


Q ss_pred             HHHHcCCHHHHHHHHhcccC
Q 037875          103 RSARYGKADIFNFLAGKIAD  122 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~  122 (204)
                      +|+..|+.+++++|+++|++
T Consensus        74 ~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           74 LAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999888763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=2.5e-24  Score=166.32  Aligned_cols=153  Identities=14%  Similarity=0.064  Sum_probs=123.9

Q ss_pred             HHHHHHHhhhcccc-----ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHH
Q 037875            5 VIEVCRKISDHALH-----VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVA   79 (204)
Q Consensus         5 ~~~~~~~l~~~~~~-----~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~   79 (204)
                      ..+++++|+++|..     ..+..+.||||+|+..|+.++|++|++.|++.....++..+   .||||+|+..|+ .+++
T Consensus       104 ~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~-~eiv  179 (376)
T 2aja_A          104 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGH-LHVL  179 (376)
T ss_dssp             CHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTC-HHHH
T ss_pred             CHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCC-HHHH
Confidence            46889999999872     23446789999999999999999999988653222344333   899999999999 9999


Q ss_pred             HHHHhhCCCcccc--ccCCCCcHHHHHH-HcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHH
Q 037875           80 DKLLRKAPGLLGM--RNNNGETALFRSA-RYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEI  156 (204)
Q Consensus        80 ~~Ll~~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  156 (204)
                      ++|+++++ +++.  .+..|.||||+|+ ..|+.+++++|++.|+              .|.||+|+|+..|+.+++++|
T Consensus       180 ~~Ll~~ga-~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------------~~~taL~~Aa~~g~~evv~lL  244 (376)
T 2aja_A          180 NRLCELAP-TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------------MLAYAEIHEFEYGEKYVNPFI  244 (376)
T ss_dssp             HHHHHSCG-GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------------HHHHHHHCTTTTTTTTHHHHH
T ss_pred             HHHHHcCC-ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------------ccchHHHHHHHCCCHHHHHHH
Confidence            99999998 6666  7888999999999 9999999999999754              278999999999999999999


Q ss_pred             HHHhchhhcccCCCCCCHhHHhccC
Q 037875          157 AKEYKYLIGEKDMDGMTALQLLSCK  181 (204)
Q Consensus       157 l~~~g~~~~~~~~~g~t~l~~a~~~  181 (204)
                      ++ .|++++..+.    +++.|+.+
T Consensus       245 ~~-~ga~~~~~~~----~l~~A~~~  264 (376)
T 2aja_A          245 AR-HVNRLKEMHD----AFKLSNPD  264 (376)
T ss_dssp             HH-HHHHHHHHHT----TTTTTSSS
T ss_pred             Hh-cCcccccccH----HHHHHHHC
Confidence            98 5999877653    44555433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=1.3e-22  Score=148.53  Aligned_cols=139  Identities=21%  Similarity=0.115  Sum_probs=119.1

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHH
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETAL  101 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  101 (204)
                      ..+.+++.+++..|+.+.+..+...+.+        .+..|.||||+|+..|+ .+++++|+. +. +++.++..|.|||
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~--------~~~~g~t~L~~A~~~g~-~~~v~~Ll~-~~-~~~~~d~~g~t~L   81 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD--------VVSEYETPWWTAARKAD-EQALSQLLE-DR-DVDAVDENGRTAL   81 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHH--------HHHHHHHHHHHHHTTTC-HHHHHHTTT-TC-CTTCBCTTSCBHH
T ss_pred             CCCccHHHHHHHcCCCcccccccccccc--------cccCCCCHHHHHHHcCC-HHHHHHHHc-CC-CCCCcCCCCCCHH
Confidence            3456666777777776665544443322        23578999999999999 899999999 76 8999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCCccccC-CCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQR-NDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      |+|+..|+.+++++|+++|++++.       ++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus        82 ~~A~~~g~~~~v~~Ll~~ga~~~~-------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A           82 LFVAGLGSDKCVRLLAEAGADLDH-------RDMRGGLTALHMAAGYVRPEVVEALVE-LGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-------CCSSSCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCc-------CCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHH
Confidence            999999999999999999999886       35 779999999999999999999999 69999999999999999997

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=7.8e-22  Score=123.11  Aligned_cols=93  Identities=27%  Similarity=0.369  Sum_probs=85.8

Q ss_pred             CCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccH
Q 037875           61 AGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTV  140 (204)
Q Consensus        61 ~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~  140 (204)
                      +|.||||+|+..++ .+++++|++.++ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|+||
T Consensus         1 ~g~t~L~~A~~~~~-~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-------~d~~g~t~   71 (93)
T 1n0q_A            1 NGRTPLHLAARNGH-LEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-------KDKNGRTP   71 (93)
T ss_dssp             --CCHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCH
T ss_pred             CCCcHHHHHHHcCC-HHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-------cCCCCCCH
Confidence            47899999999999 999999999998 8999999999999999999999999999999998886       58899999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhchh
Q 037875          141 LHMAVISQHFELALEIAKEYKYL  163 (204)
Q Consensus       141 l~~a~~~~~~~~~~~Ll~~~g~~  163 (204)
                      ||+|+..|+.+++++|++ .|++
T Consensus        72 l~~A~~~~~~~~~~~Ll~-~ga~   93 (93)
T 1n0q_A           72 LHLAARNGHLEVVKLLLE-AGAY   93 (93)
T ss_dssp             HHHHHHTTCHHHHHHHHH-TTCC
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCC
Confidence            999999999999999998 5764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=151.78  Aligned_cols=125  Identities=20%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             HHHHHHhhhcccccc--------ccCCchHHHHHHhc---CChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCC
Q 037875            6 IEVCRKISDHALHVL--------TVHDDTVLHMATYF---KRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSR   74 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~--------~~~~~~~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~   74 (204)
                      ++.++.+++.|.+++        +..|.||||+|+..   ++.+++++|++.|++     ++.+|..|.||||+|+..++
T Consensus       164 ~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----vn~~d~~G~TpLh~A~~~g~  238 (301)
T 2b0o_E          164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-----LDAKAADGNTALHYAALYNQ  238 (301)
T ss_dssp             HHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-----TTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-----CCCCCCCCCCHHHHHHHcCC
Confidence            456778889988764        56799999999997   899999999997766     88999999999999999999


Q ss_pred             CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCH
Q 037875           75 ALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHF  150 (204)
Q Consensus        75 ~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~  150 (204)
                       .+++++|++.|+ +++.++..|.|||++|+..|+.+++++|+++|++             .|.||||+|+..|+.
T Consensus       239 -~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          239 -PDCLKLLLKGRA-LVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -HHHHHHHHHTTC-CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------------TTSSCCC--------
T ss_pred             -HHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------------CCCChhHHHHhcCCc
Confidence             999999999998 8999999999999999999999999999998774             478999999988764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=1.7e-22  Score=130.95  Aligned_cols=109  Identities=27%  Similarity=0.323  Sum_probs=78.9

Q ss_pred             ccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCC
Q 037875           57 RQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRND  136 (204)
Q Consensus        57 ~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  136 (204)
                      .+|..|.||||+|+..++ .+++++|++.+. +++..+..|.||||+|+..++.+++++|++.|++++.       ++..
T Consensus         4 ~~d~~g~t~L~~A~~~~~-~~~~~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------~d~~   74 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGH-AEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-------RSKD   74 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTC-HHHHHHHTTTTC-CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-------CCTT
T ss_pred             ccCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-------cCCC
Confidence            456677777777777777 677777777766 6667777777777777777777777777777776665       4677


Q ss_pred             CccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHh
Q 037875          137 QSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTAL  175 (204)
Q Consensus       137 g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l  175 (204)
                      |.||||+|+..++.+++++|++ .|++++.++..|.+|-
T Consensus        75 g~tpl~~A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           75 GNTPEHLAKKNGHHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence            7888888888888888877777 5888888777777763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=2.4e-22  Score=130.28  Aligned_cols=110  Identities=25%  Similarity=0.269  Sum_probs=98.3

Q ss_pred             cccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCC
Q 037875           18 HVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNG   97 (204)
Q Consensus        18 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   97 (204)
                      .+.+..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..++ .+++++|++.++ +++.++..|
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~d~~g~t~L~~A~~~~~-~~~~~~Ll~~g~-~~~~~d~~g   75 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGH-AEIVKLLLAKGA-DVNARSKDG   75 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-----SSCCCSSSCCTTHHHHTTTC-HHHHHHHTTTTC-CTTCCCTTC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCc-HHHHHHHHHcCC-CCcccCCCC
Confidence            35788999999999999999999999997765     88899999999999999999 999999999998 899999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHH
Q 037875           98 ETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVL  141 (204)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l  141 (204)
                      .||||+|+..++.+++++|+++|++++.       ++..|.+|-
T Consensus        76 ~tpl~~A~~~~~~~~~~~Ll~~ga~~n~-------~~~~~~~~~  112 (115)
T 2l6b_A           76 NTPEHLAKKNGHHEIVKLLDAKGADVNA-------RSWGSSHHH  112 (115)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTSSSHHH-------HSCCCC---
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCc-------CCccccccc
Confidence            9999999999999999999999998776       567777764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=4.8e-21  Score=142.65  Aligned_cols=169  Identities=18%  Similarity=0.115  Sum_probs=132.5

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhh-------------hhhhc-------------ccccCCCcHHHHHHhcC
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELY-------------IHKMT-------------RQNKAGNTVLHATATSS   73 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~-------------~~~~~g~~~l~~a~~~~   73 (204)
                      .|..+.+.++++...|+....+++....+...             ...+.             .......++|+.|+..+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            35567889999999998877666643221100             00000             00112346899999999


Q ss_pred             CCHHHHHHHHhhCCCc-----cccccCCCCcHHHHHHHc---CCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHH
Q 037875           74 RALPVADKLLRKAPGL-----LGMRNNNGETALFRSARY---GKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV  145 (204)
Q Consensus        74 ~~~~~~~~Ll~~~~~~-----~~~~~~~~~t~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  145 (204)
                      + .+.++.++..+...     ++..+..|.||||+|+..   |+.+++++|+++|++++.       +|..|+||||+|+
T Consensus       142 d-~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~-------~d~~g~TpLh~A~  213 (278)
T 1dcq_A          142 D-IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-------QTGKGSTALHYCC  213 (278)
T ss_dssp             C-HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-------CCTTCCCHHHHHH
T ss_pred             c-cHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc-------cCCCCCCHHHHHH
Confidence            9 89999999988731     344478899999999999   899999999999999887       5889999999999


Q ss_pred             HhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhccchhhh
Q 037875          146 ISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERGFFKKL  197 (204)
Q Consensus       146 ~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~~~~~  197 (204)
                      ..|+.++++.|++ .|++++.+|..|.||||+|+.  +.++.+.+++.|..+.-
T Consensus       214 ~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  266 (278)
T 1dcq_A          214 LTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  266 (278)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             HcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999 799999999999999999985  45788888888876543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=6.6e-21  Score=146.80  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=111.1

Q ss_pred             cCCCcHHHHHHhc-CCCHHHHHHHHhhCCCcccccc--CCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCC
Q 037875           60 KAGNTVLHATATS-SRALPVADKLLRKAPGLLGMRN--NNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRND  136 (204)
Q Consensus        60 ~~g~~~l~~a~~~-~~~~~~~~~Ll~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  136 (204)
                      ..+.++||.|+.. ++ .+++++|+..++ +++..+  ..|.||||+|+..|+.+++++|+++|++++.       ++..
T Consensus       197 ~~~~t~L~~Aa~~~g~-~~~v~~LL~~Ga-dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-------~d~~  267 (368)
T 3jue_A          197 LHPGALLFRASGHPPS-LPTMADALAHGA-DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-------ADSA  267 (368)
T ss_dssp             CCHHHHHHHHTSSSCC-HHHHHHHHHTTC-CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTT
T ss_pred             CCCCcHHHHHHHccCC-HHHHHHHHHcCC-CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-------CCCC
Confidence            4566899999999 88 999999999998 888887  8899999999999999999999999999886       6899


Q ss_pred             CccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccc
Q 037875          137 QSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGF  193 (204)
Q Consensus       137 g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~  193 (204)
                      |+||||+|+..|+.+++++|+. .|++++.+|..|.|||++|+..  .+++++++..+.
T Consensus       268 G~TpLh~A~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          268 GRGPLHHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            9999999999999999999999 6999999999999999999844  467777665553

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=7.7e-19  Score=112.84  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             cccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCC
Q 037875           58 QNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ  137 (204)
Q Consensus        58 ~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g  137 (204)
                      .+.+|.||||+|+..++ .+++++|++.++ +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|
T Consensus        20 ~~~~g~t~L~~A~~~g~-~~~v~~Ll~~g~-~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-------~d~~g   90 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQ-DDEVRILMANGA-DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-------QDKFG   90 (110)
T ss_dssp             --CCHHHHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTS
T ss_pred             cCCccchHHHHHHHcCC-HHHHHHHHHcCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-------cccCC
Confidence            33444455555555544 445555544443 4444444455555555555555555555555444443       34445


Q ss_pred             ccHHHHHHHhCCHHHHHHH
Q 037875          138 STVLHMAVISQHFELALEI  156 (204)
Q Consensus       138 ~t~l~~a~~~~~~~~~~~L  156 (204)
                      +||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            5555555555555554443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=1e-18  Score=112.25  Aligned_cols=90  Identities=24%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCc
Q 037875           20 LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGET   99 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t   99 (204)
                      .+.+|.|+||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|++.++ +++.++..|.|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----i~~~d~~g~tpLh~A~~~~~-~~~v~~Ll~~ga-~~~~~d~~g~t   92 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGAD-----VAAKDKNGSTPLHLAARNGH-LEVVKLLLEAGA-DVXAQDKFGKT   92 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTSCC
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHHHHHcCC-HHHHHHHHHcCC-CccccccCCCc
Confidence            467899999999999999999999997766     88899999999999999999 999999999998 89999999999


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 037875          100 ALFRSARYGKADIFNFL  116 (204)
Q Consensus       100 ~l~~a~~~~~~~~~~~L  116 (204)
                      |||+|+..|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 34/164 (20%), Positives = 51/164 (31%), Gaps = 17/164 (10%)

Query: 23  HDDTVLHMATYFKRDDLALKLLDEIPEL-----YIHKMTRQNKAGNTVLHATATSSRALP 77
           +  T    A  + +      L      +           R  K G T L   A     + 
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD-AAEKGHVE 162

Query: 78  VADKLLRKAPGLLGMRNNNGETALFRSARYGK----ADIFNFLAGKIADYDQPSKQPFLQ 133
           V   LL +    +   +N G  AL  +           I + L    AD +         
Sbjct: 163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG------ 216

Query: 134 RNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL 177
                T L +AV  +H  L   + ++    I + D DG TAL L
Sbjct: 217 -ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 58  QNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLA 117
           + + G T L   A   + L +  +LL +    +   +++G+TAL  +       I   L 
Sbjct: 215 RGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 118 GKIADYD 124
            + A  D
Sbjct: 274 KRGASTD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 8/145 (5%)

Query: 9   CRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHA 68
            R+ +      L     T L  A      ++   LLDE+    ++      +        
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG-ADVNACDNMGRNALIHALL 191

Query: 69  TATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSK 128
           ++  S    +   LL     +  +R   G+T L  +       +   L       +Q   
Sbjct: 192 SSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRL------LEQEHI 244

Query: 129 QPFLQRNDQSTVLHMAVISQHFELA 153
           +     +D  T L +AV  +  ++A
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIA 269

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 16/155 (10%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T LH+        +A  L+     +             T LH  +       V  K L +
Sbjct: 266 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-----YTPLHVASHYGNIKLV--KFLLQ 318

Query: 86  APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV 145
               +  +   G + L ++A+ G  DI   L    A  +          +D +T L +A 
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-------EVSSDGTTPLAIAK 371

Query: 146 ISQHFELA--LEIAKEYKYLIGEKDMDGMTALQLL 178
              +  +   L++  +    +   D   M+  + +
Sbjct: 372 RLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 406

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 36/195 (18%)

Query: 26  TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRK 85
           T LH+A++     +   LL       +      N    T LH  A  +    VA K L +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNV-----SNVKVETPLHM-AARAGHTEVA-KYLLQ 54

Query: 86  APGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPF-------------- 131
               +  +  + +T L  +AR G  ++   L    A+ +  +                  
Sbjct: 55  NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 114

Query: 132 ------------LQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQL-- 177
                              T LH+A       +A E+  E          +G+T L +  
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA-ELLLERDAHPNAAGKNGLTPLHVAV 173

Query: 178 LSCKPEAFKLKQERG 192
                +  KL   RG
Sbjct: 174 HHNNLDIVKLLLPRG 188

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 6   IEVCRKISDHALHVLTVHDD--TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGN 63
           + V   +  H + V        T LH+A+++    L      +    +   +  + K G 
Sbjct: 277 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV-----KFLLQHQADVNAKTKLGY 331

Query: 64  TVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFL 116
           + LH  A       +   LL K        +++G T L  + R G   + + L
Sbjct: 332 SPLHQ-AAQQGHTDIV-TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 89  LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQ 148
           + G    +G+TAL  +  +      +FL G  A ++        Q +   T LH+A I  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL----QNDLGQTALHLAAILG 56

Query: 149 HF 150
             
Sbjct: 57  EA 58

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 93  RNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFEL 152
              +G TAL  +A  G  ++   L     D +        +  D  T LH A      E 
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-------KDYDGWTPLHAAAHWGKEEA 247

Query: 153 ALEIAKEYKYLIGEKDMDGMTALQL 177
              I  E    +   +  G TA  +
Sbjct: 248 C-RILVENLCDMEAVNKVGQTAFDV 271

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 16/153 (10%)

Query: 2   EKKVIEVCRKISDHALHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKA 61
           +    E         L +    + T+LH                   ++ +  + ++   
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

Query: 62  --------GNTVLHATATSSRALPVADKLLRKAPG-LLGMRNNNGETALFRSARYGKADI 112
                     +  +      +   + +  L+     +L  +++NG+T L  +AR G   I
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 113 FNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV 145
            + L    AD       PF+        +    
Sbjct: 275 VDALLDYGAD-------PFIANKSGLRPVDFGA 300

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 51  YIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKA 110
              +   +   G T LH  A  S    V   +  K       ++ +G+T +  +A+ G+ 
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRI 234

Query: 111 DIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELA 153
           ++  +L  + A                 T   +A  + H  + 
Sbjct: 235 EVVMYLIQQGAS-------VEAVDATDHTARQLAQANNHHNIV 270

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 55  MTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFN 114
           +   N+ G T LH  A+ +R   +A  LL         +++   TA+ R+A  G   + +
Sbjct: 96  VNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIH 153

Query: 115 FLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTA 174
            L               +Q  + +T LH+A   +  E A ++       I  ++ +  T 
Sbjct: 154 IL-------LYYKASTNIQDTEGNTPLHLACDEERVEEA-KLLVSQGASIYIENKEEKTP 205

Query: 175 LQL 177
           LQ+
Sbjct: 206 LQV 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.85
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.76

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-32  Score=199.57  Aligned_cols=177  Identities=21%  Similarity=0.162  Sum_probs=153.3

Q ss_pred             HHHHHHHhhhcccc-----ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHH
Q 037875            5 VIEVCRKISDHALH-----VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVA   79 (204)
Q Consensus         5 ~~~~~~~l~~~~~~-----~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~   79 (204)
                      ..+++++|+++|++     ..+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++
T Consensus        21 ~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-----i~~~d~~g~tpL~~A~~~~~-~~~~   94 (255)
T d1oy3d_          21 HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-----VLVAERGGHTALHLACRVRA-HTCA   94 (255)
T ss_dssp             CHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SSCCCTTSCCHHHHHTTTTC-HHHH
T ss_pred             CHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc-----ccccccccchhhhhhhccCc-hHHH
Confidence            46789999999865     3567899999999999999999999997766     88999999999999999998 8999


Q ss_pred             HHHHhhCC----------------------------------------------CccccccCCCCcHHHHHHHcCCHHHH
Q 037875           80 DKLLRKAP----------------------------------------------GLLGMRNNNGETALFRSARYGKADIF  113 (204)
Q Consensus        80 ~~Ll~~~~----------------------------------------------~~~~~~~~~~~t~l~~a~~~~~~~~~  113 (204)
                      ++|++...                                              ..++.++..|.||||+|+..++.+++
T Consensus        95 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v  174 (255)
T d1oy3d_          95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV  174 (255)
T ss_dssp             HHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccc
Confidence            98875432                                              11233456789999999999999999


Q ss_pred             HHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhc
Q 037875          114 NFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQER  191 (204)
Q Consensus       114 ~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~  191 (204)
                      ++|++.+++.+..      .+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.  +.++++.+++.
T Consensus       175 ~~Ll~~~~~~~~~------~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~  247 (255)
T d1oy3d_         175 RLLRDAGADLNKP------EPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAH  247 (255)
T ss_dssp             HHHHHHTCCTTCC------CTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred             cchhccccccccc------ccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999999887753      46789999999999999999999998 699999999999999999984  45888999999


Q ss_pred             cch
Q 037875          192 GFF  194 (204)
Q Consensus       192 g~~  194 (204)
                      |+.
T Consensus       248 Ga~  250 (255)
T d1oy3d_         248 GAP  250 (255)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-31  Score=192.16  Aligned_cols=172  Identities=22%  Similarity=0.144  Sum_probs=129.6

Q ss_pred             HHHHHhhhcccc--ccccCCchHHHHHHhcCChHHHHHHHhhCchhh----------------------------hhhhc
Q 037875            7 EVCRKISDHALH--VLTVHDDTVLHMATYFKRDDLALKLLDEIPELY----------------------------IHKMT   56 (204)
Q Consensus         7 ~~~~~l~~~~~~--~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~----------------------------~~~~~   56 (204)
                      .+.+.+..++..  ..|..|+||||+|+..|+.+++++|+..+....                            +.+++
T Consensus        18 ~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~   97 (223)
T d1uoha_          18 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN   97 (223)
T ss_dssp             HHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeE
Confidence            334455555544  568889999999999999999999887654421                            23455


Q ss_pred             ccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCC
Q 037875           57 RQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRND  136 (204)
Q Consensus        57 ~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  136 (204)
                      ..+..|.||||+|+..++ .+++++|++.|. +++.++..|.||+|+|+..++.+++++|.+.+.+++.       ++..
T Consensus        98 ~~d~~g~tpL~~A~~~~~-~e~~~~Ll~~g~-d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~-------~d~~  168 (223)
T d1uoha_          98 AVNQNGCTPLHYAASKNR-HEIAVMLLEGGA-NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI-------QDTE  168 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTC-HHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-------CCTT
T ss_pred             eeCCCCCchhhHHHHcCC-HHHHHHHHHCCC-CCCCcCCCCCccchhhhhcCCcchhhhhccccceeee-------ccCC
Confidence            667777777777777777 777777777776 6777777777777777777777777777777776665       5888


Q ss_pred             CccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC-Ccchhhh
Q 037875          137 QSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK-PEAFKLK  188 (204)
Q Consensus       137 g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~-~~~~~~~  188 (204)
                      |+||||+|+..|+.+++++||+ .|++++.+|..|+||||+|... .++.+.+
T Consensus       169 g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A~~~~~~i~~~L  220 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKGGLGLILKRM  220 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHCCTTHHHHHHHH
T ss_pred             CCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHCCCHHHHhcc
Confidence            9999999999999999999988 5999999999999999988532 2444433

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=9.9e-30  Score=188.66  Aligned_cols=177  Identities=20%  Similarity=0.189  Sum_probs=149.8

Q ss_pred             HHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      -++++++|+++|++++  +.+|.||||+|+..|+.+++++|++.|.+     ....+..+.+||+.++..++ .++++.|
T Consensus        52 ~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-----~~~~~~~~~~~L~~a~~~~~-~~~~~~l  125 (291)
T d1s70b_          52 DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-----INQPDNEGWIPLHAAASCGY-LDIAEYL  125 (291)
T ss_dssp             CHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-----cccccccccccccccccccc-cchhhcc
Confidence            3678999999998764  77899999999999999999999997765     66777888999999999988 8888888


Q ss_pred             HhhCCCcc------------------------------------------------------------ccccCCCCcHHH
Q 037875           83 LRKAPGLL------------------------------------------------------------GMRNNNGETALF  102 (204)
Q Consensus        83 l~~~~~~~------------------------------------------------------------~~~~~~~~t~l~  102 (204)
                      ++.+. ..                                                            ...+..|.||||
T Consensus       126 ~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  204 (291)
T d1s70b_         126 ISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH  204 (291)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred             cccCc-ccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhh
Confidence            87654 11                                                            112346789999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC
Q 037875          103 RSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP  182 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~  182 (204)
                      +|+..|+.++++.|++.|++++.       ++..|+||||+|+..|+.++++.|++ .|+|++.+|..|.||||+|++  
T Consensus       205 ~a~~~~~~~~~~~Ll~~g~din~-------~~~~g~TpL~~A~~~g~~~iv~lLl~-~Gadv~~~d~~G~TaL~~A~e--  274 (291)
T d1s70b_         205 VAAAKGYTEVLKLLIQARYDVNI-------KDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE--  274 (291)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTC-------CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS--
T ss_pred             HHHHcCChhhhcccccceecccc-------cccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH--
Confidence            99999999999999999998876       58899999999999999999999998 699999999999999999986  


Q ss_pred             cchhhhhhccchhhhh
Q 037875          183 EAFKLKQERGFFKKLL  198 (204)
Q Consensus       183 ~~~~~~~~~g~~~~~~  198 (204)
                      ++.+.+.+......++
T Consensus       275 ~~~~~L~~~~~~~~~~  290 (291)
T d1s70b_         275 DILGYLEELQKKQNLL  290 (291)
T ss_dssp             GGGHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhhhccCC
Confidence            5777776666555544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-29  Score=180.46  Aligned_cols=179  Identities=16%  Similarity=0.187  Sum_probs=144.2

Q ss_pred             HHHHHHhhhcc---ccccccCCchHHHHHHhcCChHHHHHHHhhCchhhhh-----------------------------
Q 037875            6 IEVCRKISDHA---LHVLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIH-----------------------------   53 (204)
Q Consensus         6 ~~~~~~l~~~~---~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------------------   53 (204)
                      +++++.|++..   .+..+.+|.||||+|+..|+.+++++|++.|++++..                             
T Consensus        13 ~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (229)
T d1ixva_          13 FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR   92 (229)
T ss_dssp             HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccc
Confidence            56777777643   3456788999999999999999999999988764310                             


Q ss_pred             ----hhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhccc-CCCCCCC
Q 037875           54 ----KMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA-DYDQPSK  128 (204)
Q Consensus        54 ----~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~-~~~~~~~  128 (204)
                          .....+..+.++++.++..++ .+++++|+..+. .....+..|.||||+|+..|+.++++.|++.+. +++.   
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~---  167 (229)
T d1ixva_          93 PLKPDLNKITNQGVTCLHLAVGKKW-FEVSQFLIENGA-SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW---  167 (229)
T ss_dssp             SSCCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCC---
T ss_pred             cccccccccccccccccccccccch-hhhhhhhhhhcc-cccccCCCCCCccchhhhcccccccccccccccccccc---
Confidence                111223456666666676666 778888888776 677788899999999999999999999998863 4444   


Q ss_pred             CccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCcchhhhhhccch
Q 037875          129 QPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPEAFKLKQERGFF  194 (204)
Q Consensus       129 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~~  194 (204)
                          ++..|+||||+|+..|+.+++++|+++.|++++.+|.+|.|||++|+. .++.+.+++.|++
T Consensus       168 ----~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-~~~~~~Ll~~g~d  228 (229)
T d1ixva_         168 ----QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-EQVKKFFLNNVVD  228 (229)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC-HHHHHHHHHHCCC
T ss_pred             ----cccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh-HHHHHHHHHcCCC
Confidence                689999999999999999999999987799999999999999999884 4678888888764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4e-29  Score=182.05  Aligned_cols=172  Identities=22%  Similarity=0.169  Sum_probs=144.3

Q ss_pred             ccccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCC
Q 037875           19 VLTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGE   98 (204)
Q Consensus        19 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   98 (204)
                      .-+++|.||||+||..|+.+++++|++.|+++.  .++.++..|.||||+|+..|+ .+++++|++.|+ +++.++..|.
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~--~i~~~~~~g~TpL~~A~~~g~-~~iv~~Ll~~ga-~i~~~d~~g~   79 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--YLDLQNDLGQTALHLAAILGE-ASTVEKLYAAGA-GVLVAERGGH   79 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG--GGGCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTC-CSSCCCTTSC
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCcCCCCCCccchHHhhcc-cccccccccccc-cccccccccc
Confidence            346889999999999999999999999765432  377888999999999999999 999999999998 8999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcccCCCCC----------------------------------------CCCccccCCCCc
Q 037875           99 TALFRSARYGKADIFNFLAGKIADYDQP----------------------------------------SKQPFLQRNDQS  138 (204)
Q Consensus        99 t~l~~a~~~~~~~~~~~L~~~~~~~~~~----------------------------------------~~~~~~~~~~g~  138 (204)
                      ||||+|+..++.++++.|++.+......                                        ....+.++..|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            9999999999999999998764432110                                        111356788999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHHhchhhcc-cCCCCCCHhHHhc--cCCcchhhhhhccchh
Q 037875          139 TVLHMAVISQHFELALEIAKEYKYLIGE-KDMDGMTALQLLS--CKPEAFKLKQERGFFK  195 (204)
Q Consensus       139 t~l~~a~~~~~~~~~~~Ll~~~g~~~~~-~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~  195 (204)
                      ||||+|+..++.+++++|++ .+++.+. .+..|.||||+|+  .+.++++.+++.|..-
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi  218 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP  218 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccccccccccccccchhc-ccccccccccccccccccccccccHHHHHHHHHHCCCCC
Confidence            99999999999999999999 5888876 4678999999998  4457888888877543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.2e-29  Score=168.01  Aligned_cols=152  Identities=23%  Similarity=0.253  Sum_probs=137.8

Q ss_pred             hHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 037875           26 TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSA  105 (204)
Q Consensus        26 ~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  105 (204)
                      ++||+||..|+.++|++|++.|++     ++.+|..|.||||+|+ .++ .+++++|++.++ +++..+..+.++++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-----~n~~d~~g~TpL~~A~-~~~-~ei~~~Ll~~~a-~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-----VNAQNGFGRTALQVMK-LGN-PEIARRLLLRGA-NPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-----TTCCCTTSCCHHHHCC-SSC-HHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-----cCccCCcccccccccc-ccc-cccccccccccc-ccccccccCcccccccc
Confidence            799999999999999999997776     8899999999999875 678 899999999998 89999999999999999


Q ss_pred             HcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCc
Q 037875          106 RYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPE  183 (204)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~  183 (204)
                      ..+....++.|+..+.+++.       .+..|.+|+|+|+..++.++++.|+++.+.+.+.+|..|.||||+|+.  +.+
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~  147 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQADVNI-------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  147 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH
Confidence            99999999999999888776       588999999999999999999999997556899999999999999984  457


Q ss_pred             chhhhhhcc
Q 037875          184 AFKLKQERG  192 (204)
Q Consensus       184 ~~~~~~~~g  192 (204)
                      +.+++++.|
T Consensus       148 iv~~Ll~~G  156 (156)
T d1ihba_         148 VVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            777777665

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=7.2e-29  Score=175.58  Aligned_cols=163  Identities=22%  Similarity=0.246  Sum_probs=139.6

Q ss_pred             HHHHHHhhhcccccc---ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcC---------
Q 037875            6 IEVCRKISDHALHVL---TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSS---------   73 (204)
Q Consensus         6 ~~~~~~l~~~~~~~~---~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~---------   73 (204)
                      -++++.|+++|++++   |.+|.||||+||..|+.+++++|++.|++     ++.++..+.++++.++..+         
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-----~n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-----ANSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-----cccccccccccccccccccccccccccc
Confidence            378999999999874   56799999999999999999999997766     5666666666666654443         


Q ss_pred             -------------------------CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCC
Q 037875           74 -------------------------RALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSK  128 (204)
Q Consensus        74 -------------------------~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~  128 (204)
                                               . ....+.|...+. +++.++..|.||+++++..+..++++.+++.+.+++.   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~-~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~---  151 (209)
T d1ot8a_          77 RNRATNLNARMHDGTTPLILAARLAI-EGMVEDLITADA-DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA---  151 (209)
T ss_dssp             TCTTCCTTCCCTTCCCHHHHHHHTTC-TTHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC---
T ss_pred             cccccccccccccccccccccccccc-hhhhhhhhhhcc-cccccCCCCCCcchhhcccCcceeeeeeccccccccc---
Confidence                                     3 455666666665 7788889999999999999999999999999988776   


Q ss_pred             CccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCc
Q 037875          129 QPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPE  183 (204)
Q Consensus       129 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~  183 (204)
                          ++..|.||||+|+..|+.++++.|++ .|+|++.+|..|.||||+|+.++.
T Consensus       152 ----~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         152 ----QDDKDETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             ----CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ----cccccccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCC
Confidence                58899999999999999999999999 699999999999999999997654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=2e-30  Score=190.89  Aligned_cols=179  Identities=15%  Similarity=0.164  Sum_probs=141.5

Q ss_pred             HHHHhhhccccccc-cCCchHHHHHHhcCChHHHHHHHhhCchh---hhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            8 VCRKISDHALHVLT-VHDDTVLHMATYFKRDDLALKLLDEIPEL---YIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         8 ~~~~l~~~~~~~~~-~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      +.+.|.+.+++..+ .+|.||||+||..|+.++++.|+......   .|+++|.+|..|.||||+|+..|+ .+++++|+
T Consensus        16 ~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~-~~iv~~Ll   94 (277)
T d2fo1e1          16 ITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR-RRLVAYLM   94 (277)
T ss_dssp             CCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHH
T ss_pred             HHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccc-cccccccc
Confidence            34556667777665 46999999999999999998876532211   234589999999999999999999 89999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhccc---CCCC-----------------------------------
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA---DYDQ-----------------------------------  125 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~---~~~~-----------------------------------  125 (204)
                      ++|+ +++.++..|.||+++|+..++.++.+.+...+.   .++.                                   
T Consensus        95 ~~Ga-d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (277)
T d2fo1e1          95 KAGA-DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD  173 (277)
T ss_dssp             HTTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS
T ss_pred             cccc-ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccc
Confidence            9998 889999999999999999999888777765421   1000                                   


Q ss_pred             ------------------------------------CCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCC
Q 037875          126 ------------------------------------PSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDM  169 (204)
Q Consensus       126 ------------------------------------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~  169 (204)
                                                          .+.+.+.++..|+||||+|+..|+.+++++|++ .|++++.+|.
T Consensus       174 ~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-~gadin~~d~  252 (277)
T d2fo1e1         174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDA  252 (277)
T ss_dssp             CCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCS
T ss_pred             ccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCcCC
Confidence                                                011135578899999999999999999999998 6999999999


Q ss_pred             CCCCHhHHhccCC--cchhhhh
Q 037875          170 DGMTALQLLSCKP--EAFKLKQ  189 (204)
Q Consensus       170 ~g~t~l~~a~~~~--~~~~~~~  189 (204)
                      +|.||||+|+.++  ++.+.++
T Consensus       253 ~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         253 TDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             SSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999998654  5555543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.1e-29  Score=177.36  Aligned_cols=174  Identities=22%  Similarity=0.218  Sum_probs=142.9

Q ss_pred             HHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHh
Q 037875            7 EVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR   84 (204)
Q Consensus         7 ~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~   84 (204)
                      ++++.+...+.++  .+..|.||||+|+..|+.+++++|++.|++     ++.++..|.+||++++..++ .++++.|+.
T Consensus        20 ~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-----~~~~d~~g~t~l~~~~~~~~-~~~~~~l~~   93 (221)
T d1iknd_          20 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-----PELRDFRGNTPLHLACEQGC-LASVGVLTQ   93 (221)
T ss_dssp             CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-----SCCCCTTCCCHHHHHHHHTC-HHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc-----cccccccccccccccccccc-ccccchhhh
Confidence            3456666677554  578899999999999999999999997776     88899999999999999999 899999988


Q ss_pred             hCCC-----ccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHH
Q 037875           85 KAPG-----LLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE  159 (204)
Q Consensus        85 ~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  159 (204)
                      .+..     ........+.||+|.|+..++.+++++|+..|..++..      .+..|.||||+|++.|+.+++++|++ 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~------~~~~G~T~L~~A~~~g~~~~v~~Ll~-  166 (221)
T d1iknd_          94 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ------EPCNGRTALHLAVDLQNPDLVSLLLK-  166 (221)
T ss_dssp             STTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC------CTTTCCCHHHHHHHTTCHHHHHHHHT-
T ss_pred             hcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc------cccCCCCccccccccccHHHHHHHHh-
Confidence            6541     22233456889999999999999999999999987763      35679999999999999999999998 


Q ss_pred             hchhhcccCCCCCCHhHHhccC--Ccchhhhhhccc
Q 037875          160 YKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGF  193 (204)
Q Consensus       160 ~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~  193 (204)
                      .|+|++.+|.+|.||||+|+..  .++.+.+.+.+.
T Consensus       167 ~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         167 CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             cCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            6999999999999999999854  456666655543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=169.69  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHh
Q 037875           96 NGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTAL  175 (204)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l  175 (204)
                      .+.++++.|+..+...+.+.+++.|...+.       ++..|.||||+|+..|+.+++++|++ .|+|++.+|.+|.|||
T Consensus       143 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-------~d~~g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL  214 (228)
T d1k1aa_         143 SGRSPLIHAVENNSLSMVQLLLQHGANVNA-------QMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPL  214 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------BCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTT
T ss_pred             chhhHHHHHHHhhhhhhhhhhhhhcccccc-------ccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHH
Confidence            456777777777777777777776665554       68899999999999999999999998 6999999999999999


Q ss_pred             HHhccCC
Q 037875          176 QLLSCKP  182 (204)
Q Consensus       176 ~~a~~~~  182 (204)
                      |+|+.++
T Consensus       215 ~~A~~~~  221 (228)
T d1k1aa_         215 MVARSRR  221 (228)
T ss_dssp             TTCSSHH
T ss_pred             HHHHhCC
Confidence            9998654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.6e-27  Score=157.72  Aligned_cols=143  Identities=23%  Similarity=0.186  Sum_probs=128.9

Q ss_pred             chHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 037875           25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRS  104 (204)
Q Consensus        25 ~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  104 (204)
                      .|||+.||+.|+.+++++|++.|++     ++ .+..|.||||+|+..++ .++++.+..... ........+.++++.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~-----~~-~~~~g~t~L~~a~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP-----FT-TDWLGTSPLHLAAQYGH-FSTTEVLLRAGV-SRDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-----CC-CCTTCCCHHHHHHHHTC-HHHHHHHHTTTC-CTTCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC-----cc-cccCCCccccccccccc-cccccccccccc-cccccccccccccccc
Confidence            4899999999999999999998775     44 68899999999999999 899999888776 5566677888999999


Q ss_pred             HHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCCc
Q 037875          105 ARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKPE  183 (204)
Q Consensus       105 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~~  183 (204)
                      +...+.+.++++...+++.+.       ++..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+.++.
T Consensus        75 ~~~~~~~~~~~l~~~~~~~~~-------~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGADVNA-------KDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccceeeecccccCCcccc-------ccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCC
Confidence            999999999999999988776       68999999999999999999999998 699999999999999999996653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-26  Score=171.13  Aligned_cols=189  Identities=21%  Similarity=0.235  Sum_probs=128.3

Q ss_pred             HHHHHHHhhhcccccc---ccCCchHHHHHHhcCChHHHHHHHhhCchhhh----------------------------h
Q 037875            5 VIEVCRKISDHALHVL---TVHDDTVLHMATYFKRDDLALKLLDEIPELYI----------------------------H   53 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~~---~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~----------------------------~   53 (204)
                      -++++++|+++|++++   +..|.||||+|+..|+.+++++|++.+.....                            .
T Consensus        17 ~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (285)
T d1wdya_          17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA   96 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcc
Confidence            4689999999999875   34689999999999999999999987654310                            1


Q ss_pred             hhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccc----------ccCCCCcHHHHHHHcCCHHHHHHHHhc-ccC
Q 037875           54 KMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGM----------RNNNGETALFRSARYGKADIFNFLAGK-IAD  122 (204)
Q Consensus        54 ~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~t~l~~a~~~~~~~~~~~L~~~-~~~  122 (204)
                      .....+..+.++++.++..++ ...+..++.... .++.          ....|.||||+|++.|+.+++++|++. |++
T Consensus        97 ~~~~~~~~~~~~l~~a~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  174 (285)
T d1wdya_          97 DVNECDFYGFTAFMEAAVYGK-VKALKFLYKRGA-NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD  174 (285)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC
T ss_pred             cccccccCCCchhHHHHHhcc-hhhhhhhhhhcc-cccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCC
Confidence            111222344455555555554 444444443322 1111          122355555555555555555555543 333


Q ss_pred             CCCC------------------------------CCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCC
Q 037875          123 YDQP------------------------------SKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGM  172 (204)
Q Consensus       123 ~~~~------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~  172 (204)
                      ++..                              +.+++.++..|.||||+|+..|+.+++++||+..|++++.+|.+|.
T Consensus       175 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~  254 (285)
T d1wdya_         175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK  254 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC
T ss_pred             cccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCC
Confidence            3211                              1122346889999999999999999999999877999999999999


Q ss_pred             CHhHHhccC--Ccchhhhhhccchh
Q 037875          173 TALQLLSCK--PEAFKLKQERGFFK  195 (204)
Q Consensus       173 t~l~~a~~~--~~~~~~~~~~g~~~  195 (204)
                      ||||+|+..  .++++.+++.|+..
T Consensus       255 TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         255 TALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999854  58888999999864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.3e-27  Score=158.88  Aligned_cols=148  Identities=20%  Similarity=0.224  Sum_probs=129.8

Q ss_pred             hHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 037875           26 TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSA  105 (204)
Q Consensus        26 ~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  105 (204)
                      ..|+.||..|+.++|+.|++.+    +.+++..|..|.||||+|+. ++ .+++++|+..+. +++..+..+.+|++.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~----~~~~n~~d~~g~t~L~~A~~-~~-~~~v~~Ll~~~~-~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE----LVHPDALNRFGKTALQVMMF-GS-TAIALELLKQGA-SPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT----CCCTTCCCTTSCCHHHHSCT-TC-HHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC----CCCCCccCCCCCcccccccc-cc-cccccccccccc-ccccccccccccccccc
Confidence            4699999999999999999853    23488999999999999874 77 799999999987 78889999999999999


Q ss_pred             HcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC--c
Q 037875          106 RYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP--E  183 (204)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~--~  183 (204)
                      ..++.+++++++++|++++.       ++..|.||||+|+..|+.+++++|+  .|++++.+|..|+||||+|+..+  +
T Consensus        77 ~~~~~~~~~~~l~~~~~~n~-------~~~~~~t~L~~A~~~~~~~i~~~L~--~~~~~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADVNV-------PDGTGALPIHLAVQEGHTAVVSFLA--AESDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCC-------CCTTSCCHHHHHHHHTCHHHHHHHH--TTSCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             cccccccccccccccccccc-------ccCCCCeeecccccccccccccccc--ccccccccCCCCCCHHHHHHHcCCHH
Confidence            99999999999999998776       5889999999999999999998665  38999999999999999998654  5


Q ss_pred             chhhhh
Q 037875          184 AFKLKQ  189 (204)
Q Consensus       184 ~~~~~~  189 (204)
                      +.+.++
T Consensus       148 iv~~Ll  153 (156)
T d1bd8a_         148 LVDILQ  153 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.3e-27  Score=173.97  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=119.2

Q ss_pred             hcccccc---ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCC------HHHHHHHHh
Q 037875           14 DHALHVL---TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRA------LPVADKLLR   84 (204)
Q Consensus        14 ~~~~~~~---~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~------~~~~~~Ll~   84 (204)
                      ..+++++   |.+|.||||+||..|+.++|+.|++.|++     ++.+|..|.||||.|+..++.      .++++++..
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-----~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~  168 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP  168 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh
Confidence            3455554   78899999999999999999999997776     889999999999999987641      133444432


Q ss_pred             hCCCccccccCCCCcHHHHHHHcCC----HH--------HHHHHHhcccCCCCC--------------------------
Q 037875           85 KAPGLLGMRNNNGETALFRSARYGK----AD--------IFNFLAGKIADYDQP--------------------------  126 (204)
Q Consensus        85 ~~~~~~~~~~~~~~t~l~~a~~~~~----~~--------~~~~L~~~~~~~~~~--------------------------  126 (204)
                          .+...+..|+||||.++..+.    ..        ++.++...+......                          
T Consensus       169 ----~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
T d1sw6a_         169 ----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL  244 (301)
T ss_dssp             ----GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred             ----hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhh
Confidence                456678899999998876543    22        233444433321100                          


Q ss_pred             ----CCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          127 ----SKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       127 ----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                          ...++.+|..|+||||+|++.|+.+++++|++ .|++++.+|..|.|||++|+
T Consensus       245 ~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence                00146689999999999999999999999999 69999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=9.2e-26  Score=167.05  Aligned_cols=168  Identities=22%  Similarity=0.252  Sum_probs=146.0

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALF  102 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  102 (204)
                      .+.|+|+.||..|+.++|++|++.|++     ++.+|..|.||||+|+..|+ .+++++|++++. +....+..+.+|++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gad-----vn~~d~~G~T~L~~A~~~g~-~eiv~~Ll~~~~-~~~~~~~~~~~~L~  111 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGAD-----INYANVDGLTALHQACIDDN-VDMVKFLVENGA-NINQPDNEGWIPLH  111 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCC-----TTCBCTTCCBHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCC-----CCccCCCCCcHHHHHHhcCC-ceeeeeeccccc-cccccccccccccc
Confidence            356999999999999999999997776     88999999999999999999 999999999987 67778888999999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCCCCC-----------------------------------------------------
Q 037875          103 RSARYGKADIFNFLAGKIADYDQPSKQ-----------------------------------------------------  129 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~-----------------------------------------------------  129 (204)
                      .++..++.++++.|+++|...+.....                                                     
T Consensus       112 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (291)
T d1s70b_         112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN  191 (291)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence            999999999999999988765432211                                                     


Q ss_pred             ccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhcc--CCcchhhhhhccchhhhh
Q 037875          130 PFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSC--KPEAFKLKQERGFFKKLL  198 (204)
Q Consensus       130 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~~~g~~~~~~  198 (204)
                      ....+..|.||||.|+..|+.++++.|+. .|++++.++..|.||||+|+.  +.++.+++++.|+.....
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cccccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            12355778999999999999999999998 699999999999999999984  568888899998765443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.3e-26  Score=162.19  Aligned_cols=161  Identities=20%  Similarity=0.201  Sum_probs=130.0

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHh-------------------
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLR-------------------   84 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~-------------------   84 (204)
                      +.+.|+.+|..|+.+.++.++..+..    .++.+|..|.||||+|+..|+ .+++++|+.                   
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~----~~~~~D~~G~TpLh~Aa~~g~-~e~~~~l~~~~~~~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKS----LATRTDQDSRTALHWACSAGH-TEIVEFLLQLGVPVNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGG----GGGCCCTTSCCHHHHHHHHTC-HHHHHHHHHHTCCSCCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCC----cCcCcCCCCCCHHHHHHHhhh-hccccccccccccccccccccccccccc
Confidence            46778889999999999888876443    488999999999999999886 565555554                   


Q ss_pred             --------------hCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCH
Q 037875           85 --------------KAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHF  150 (204)
Q Consensus        85 --------------~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~  150 (204)
                                    ++. +++.++..|.||||+|+..|+.+++++|+++|++++.       ++..|.||||+|+..++.
T Consensus        78 ~~~~~~~i~~~Ll~~~~-d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~-------~~~~~~t~L~~a~~~~~~  149 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-------KDHYEATAMHRAAAKGNL  149 (223)
T ss_dssp             HHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCH
T ss_pred             ccccccchhHHHhccCc-eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC-------cCCCCCccchhhhhcCCc
Confidence                          443 5566777888899999888988999999888887765       578888999999999999


Q ss_pred             HHHHHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhhccchhhhh
Q 037875          151 ELALEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQERGFFKKLL  198 (204)
Q Consensus       151 ~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~g~~~~~~  198 (204)
                      ++++.|+. .+.+++.+|..|.||||+|+..  .++.+.+++.|+.....
T Consensus       150 ~~~~~L~~-~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~  198 (223)
T d1uoha_         150 KMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE  198 (223)
T ss_dssp             HHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             chhhhhcc-ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCC
Confidence            88888777 6899999999999999999854  47778888888765443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=151.37  Aligned_cols=120  Identities=18%  Similarity=0.071  Sum_probs=109.3

Q ss_pred             CchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCC-cHHH
Q 037875           24 DDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGE-TALF  102 (204)
Q Consensus        24 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-t~l~  102 (204)
                      +.++||+|+..|+.+++++|++.|++     ++.++..|.||+|+|+ .++ .+++++|++.++ +++..+..+. ||||
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad-----~n~~~~~g~t~l~~a~-~g~-~~~v~~Ll~~ga-~~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN-----PNAPNSYGRRPIQVMM-MGS-ARVAELLLLHGA-EPNCADPATLTRPVH   74 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCSSSCCTTTSSC-TTC-HHHHHHHHTTTC-CCCCCCTTTCCCHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc-----cccccccccccccccc-ccc-cccccccccccc-ccccccccccccccc
Confidence            56899999999999999999997766     8899999999999775 688 899999999998 7888888776 6999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875          103 RSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      +|++.|+.+++++|+++|++++.       +|..|+||||+|+..|+.+++++|+.
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~~~~-------~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGARLDV-------RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSC-------CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccc-------ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999887       68999999999999999999998865

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.1e-26  Score=150.09  Aligned_cols=106  Identities=22%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             cHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHH
Q 037875           64 TVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHM  143 (204)
Q Consensus        64 ~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~  143 (204)
                      |||++|+..|+ .+++++|++.|+ +++.++..|.||||+|+..|+.+++++|++.|++++.       ++..|+||||+
T Consensus         4 tpL~~A~~~g~-~~~v~~Ll~~g~-d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~-------~d~~g~tpLh~   74 (118)
T d1myoa_           4 KEFMWALKNGD-LDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-------PDKHHITPLLS   74 (118)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHTTTC-CCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC-------CSSSCSCHHHH
T ss_pred             hHHHHHHHCCC-HHHHHHHHHhhh-ccccccccccccccccccccccccccccccccceeee-------cccccccchhh
Confidence            68888888887 788888888876 7777888888888888888888888888888887776       57788888888


Q ss_pred             HHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhc
Q 037875          144 AVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLS  179 (204)
Q Consensus       144 a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~  179 (204)
                      |+..|+.+++++|++ .|++++.+|.+|.|||++|.
T Consensus        75 A~~~~~~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          75 AVYEGHVSCVKLLLS-KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHTTTCCHHHHHHHT-TCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhcCchhhhhhhhc-ccccceeeCCCCCCHHHHHh
Confidence            888888888888888 58888888888999988874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.5e-25  Score=159.26  Aligned_cols=167  Identities=19%  Similarity=0.134  Sum_probs=133.2

Q ss_pred             chHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccc---cccCCCCcHH
Q 037875           25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLG---MRNNNGETAL  101 (204)
Q Consensus        25 ~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~---~~~~~~~t~l  101 (204)
                      ++|||+||..|+.++++.|++....    .++.+|.+|.||||+|+..|+ .+++++|++.++ +++   ..+..|.+|+
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~----~~~~~d~~G~TpL~~A~~~g~-~~iv~~Ll~~ga-~~~~~~~~~~~~~~~~   74 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS----LLLQKDQDGRIPLHWSVSFQA-HEITSFLLSKME-NVNLDDYPDDSGWTPF   74 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG----GTTCCCTTSCCHHHHHHHTTC-HHHHHHHHTTCT-TCCGGGCCCTTSCCHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC----cccccCCCCCCHHHHHHHcCC-ccccchhhhhhc-cccccccccccccccc
Confidence            4899999999999999999986543    488999999999999999999 999999999987 554   3456677888


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCC----------------------------CCCccccCCCCccHHHHHHHhCCHHHH
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQP----------------------------SKQPFLQRNDQSTVLHMAVISQHFELA  153 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~----------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~  153 (204)
                      ++++..+..++++.++..+...+..                            +...+.++..|+||||+|+..|+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          75 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccc
Confidence            8887777777777776665543221                            111344678899999999999999999


Q ss_pred             HHHHHHhchhhcccCCCCCCHhHHhccC--Ccchhhhhh-ccchhhh
Q 037875          154 LEIAKEYKYLIGEKDMDGMTALQLLSCK--PEAFKLKQE-RGFFKKL  197 (204)
Q Consensus       154 ~~Ll~~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~-~g~~~~~  197 (204)
                      +.|+...+.+++.+|.+|.||||+|+..  .++.+.+++ .|.....
T Consensus       155 ~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~  201 (229)
T d1ixva_         155 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL  201 (229)
T ss_dssp             HHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred             ccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCC
Confidence            9999964578999999999999999854  467777765 4765443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-25  Score=170.19  Aligned_cols=146  Identities=26%  Similarity=0.311  Sum_probs=126.5

Q ss_pred             cCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHH
Q 037875           22 VHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETAL  101 (204)
Q Consensus        22 ~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  101 (204)
                      ..+.|||++|+..++.++++++++.+..     .+..+..|.+|++.++..++ .+++++|++.+. +++..+..+.|||
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~l~~a~~~~~-~~i~~~Ll~~g~-~~~~~~~~~~t~L  301 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLLSKQAN-----GNLGNKSGLTPLHLVAQEGH-VPVADVLIKHGV-MVDATTRMGYTPL  301 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCC-----TTCCCTTCCCHHHHHHHHTC-HHHHHHHHHHTC-CTTCCCSSCCCHH
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhhccccc-----cccccCCCCChhhhhhhcCc-HHHHHHHHHCCC-ccccccccccccc
Confidence            3456777777777777777777775444     66778888999999999998 899999999887 7888888889999


Q ss_pred             HHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccC
Q 037875          102 FRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCK  181 (204)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~  181 (204)
                      +.++..++.++++.+++.|++++.       ++..|+||||+|++.|+.+++++|++ .|++++.+|.+|.||||+|+.+
T Consensus       302 ~~~~~~~~~~~~~~ll~~g~~in~-------~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         302 HVASHYGNIKLVKFLLQHQADVNA-------KTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             HHHHHSSCSHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHT
T ss_pred             hhhcccCcceeeeeeccccccccc-------cCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHc
Confidence            999999999999999999888876       68899999999999999999999999 6999999999999999999866


Q ss_pred             C
Q 037875          182 P  182 (204)
Q Consensus       182 ~  182 (204)
                      +
T Consensus       374 ~  374 (408)
T d1n11a_         374 G  374 (408)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.9e-25  Score=147.59  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=126.9

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHH
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKL   82 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~L   82 (204)
                      -+++++.|+++|+++  .+..|.||||+|+ .++.+++++|++.|++     ++.++..|.++++.++..+. .+.++.|
T Consensus        13 ~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-----~~~~~~~~~~~l~~~~~~~~-~~~~~~l   85 (156)
T d1ihba_          13 DLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-----PDLKDRTGFAVIHDAARAGF-LDTLQTL   85 (156)
T ss_dssp             CHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTC-HHHHHHH
T ss_pred             CHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccc-----cccccccCcccccccccccc-ccccccc
Confidence            468999999999876  4778999999886 7899999999997766     78899999999999999999 8999999


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhccc-CCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhc
Q 037875           83 LRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIA-DYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYK  161 (204)
Q Consensus        83 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g  161 (204)
                      +..+. .++..+..+.+|+++|+..++.+++++|+++++ +.+.       ++..|.||||+|+..++.+++++|++ .|
T Consensus        86 ~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-------~d~~g~TpL~~A~~~~~~~iv~~Ll~-~G  156 (156)
T d1ihba_          86 LEFQA-DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-------RNHKGDTACDLARLYGRNEVVSLMQA-NG  156 (156)
T ss_dssp             HHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-TC
T ss_pred             ccccc-cccccccccccccccccccccccccccccccccccccc-------cCCCCCCHHHHHHHcCCHHHHHHHHh-cC
Confidence            99987 788889999999999999999999999999976 4444       68899999999999999999999988 34

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-26  Score=163.19  Aligned_cols=170  Identities=19%  Similarity=0.207  Sum_probs=138.4

Q ss_pred             CCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 037875           23 HDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALF  102 (204)
Q Consensus        23 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  102 (204)
                      +|.||||+|+..|+.++++.|++.... .+..+|.+|..|.||||+|+..++ .+++++|++.++ +++..+..|.||++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~-~~~~in~~d~~g~TpLh~A~~~~~-~~iv~~L~~~g~-d~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQ-PEIAEALLGAGC-DPELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTC-HHHHHCCCSCCC-CSCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHh-CCCCcccCCCCCCccccccccccc-cccccccccccc-cccccccccccccc
Confidence            589999999999997666555543222 444589999999999999999999 899999999998 89999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccC-CCCCCHhHHhccC
Q 037875          103 RSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKD-MDGMTALQLLSCK  181 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~-~~g~t~l~~a~~~  181 (204)
                      .++..+..++++.|+..+....... ........|.||+|.|+..++.+.+.+|+. .|+.++..+ ..|.||||+|+..
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHS-ILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSC-GGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             cccccccccccchhhhhcccccccc-cccccccccchhhhHHhhcCChhheeeecc-cCcccccccccCCCCcccccccc
Confidence            9999999999999999877654322 233345678999999999999999999988 588888765 6799999999844


Q ss_pred             --Ccchhhhhhccchhhh
Q 037875          182 --PEAFKLKQERGFFKKL  197 (204)
Q Consensus       182 --~~~~~~~~~~g~~~~~  197 (204)
                        .++++.+++.|.+-..
T Consensus       156 g~~~~v~~Ll~~gad~~~  173 (221)
T d1iknd_         156 QNPDLVSLLLKCGADVNR  173 (221)
T ss_dssp             TCHHHHHHHHTTTCCSCC
T ss_pred             ccHHHHHHHHhcCCcccc
Confidence              5777888888865433

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=147.43  Aligned_cols=138  Identities=18%  Similarity=0.277  Sum_probs=121.4

Q ss_pred             HHHHHHHhhhc-cccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHH
Q 037875            5 VIEVCRKISDH-ALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADK   81 (204)
Q Consensus         5 ~~~~~~~l~~~-~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~   81 (204)
                      -+++++.|++. +.++  .+..|.||||+|+. ++.+++++|++.+.+     ++..+..|.+|++.++..++ .+++++
T Consensus        14 ~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~-----~~~~~~~~~~~l~~~~~~~~-~~~~~~   86 (156)
T d1bd8a_          14 DVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS-----PNVQDTSGTSPVHDAARTGF-LDTLKV   86 (156)
T ss_dssp             CHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTC-HHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccc-----cccccccccccccccccccc-cccccc
Confidence            35778888775 5554  57889999999874 889999999997766     78888999999999999999 899999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           82 LLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        82 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      +++.+. +++.++..|.||||+|++.|+.+++++|+ .|++++.       ++..|+||||+|+..|+.+++++|++
T Consensus        87 ~l~~~~-~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~-------~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          87 LVEHGA-DVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR-------RDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHTTC-CSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC-------CCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccc-ccccccCCCCeeecccccccccccccccc-ccccccc-------cCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999997 88999999999999999999999999887 5777665       68999999999999999999998876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=167.26  Aligned_cols=162  Identities=21%  Similarity=0.213  Sum_probs=124.0

Q ss_pred             chHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 037875           25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRS  104 (204)
Q Consensus        25 ~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  104 (204)
                      .||||+||..|+.++|++|++.|++     ++..|..|.||||+|+..|+ .+++++|+++|+ +++..+..|.||||+|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~-----in~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~ga-di~~~~~~g~t~L~~A   73 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS-----PNVSNVKVETPLHMAARAGH-TEVAKYLLQNKA-KVNAKAKDDQTPLHCA   73 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-----SCCSSSCCCCHHHHHHHHTC-HHHHHHHHHHTC-CSSCCCTTSCCHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCC-HHHHHHHHHCcC-CCCCCCCCCCCHHHHH
Confidence            3788888888888889888886665     78888888889988888888 888888888887 7888888888898888


Q ss_pred             HHcCCHHHHHHHHhcccCCCCCC--------------------------CCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875          105 ARYGKADIFNFLAGKIADYDQPS--------------------------KQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus       105 ~~~~~~~~~~~L~~~~~~~~~~~--------------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      +..|+.+++++|+..+.+.....                          ......+..+.++++.++..++.++++.|+.
T Consensus        74 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~  153 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE  153 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH
Confidence            88888888888887765533211                          1123355677788888888888888888877


Q ss_pred             HhchhhcccCCCCCCHhHHhccCC--cchhhhhhccch
Q 037875          159 EYKYLIGEKDMDGMTALQLLSCKP--EAFKLKQERGFF  194 (204)
Q Consensus       159 ~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~~~g~~  194 (204)
                       .|++++..+..|.+||++|+..+  ++.+.++..|..
T Consensus       154 -~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~  190 (408)
T d1n11a_         154 -RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS  190 (408)
T ss_dssp             -TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             -cCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc
Confidence             58888888888888888887443  455555555543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.1e-25  Score=144.98  Aligned_cols=120  Identities=16%  Similarity=0.135  Sum_probs=107.5

Q ss_pred             hHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 037875           26 TVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSA  105 (204)
Q Consensus        26 ~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  105 (204)
                      ++|+.||..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|++.++ +++.++.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-----~n~~d~~g~t~Lh~A~~~~~-~~~~~~ll~~g~-~~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-----PSLPNDEGITALHNAVCAGH-TEIVKFLVQFGV-NVNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-----CCCCCTTSCCHHHHHHHHTC-HHHHHHHHHHTC-CTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-----cccccccccccccccccccc-cccccccccccc-ccccccccCcccccccc
Confidence            678999999999999999997766     88999999999999999999 899999999998 89999999999999999


Q ss_pred             HcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHH--HHhCCHHHHHHHHH
Q 037875          106 RYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMA--VISQHFELALEIAK  158 (204)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~  158 (204)
                      .+|+.+++++|+++|++++..      ....+.||++.+  +..|+.+++++|+.
T Consensus        76 ~~g~~~~v~~Ll~~ga~v~~~------~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAVFAM------TYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC------CSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCCcccc------cCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            999999999999999998863      134577876654  57788999999987

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=8.7e-26  Score=145.77  Aligned_cols=107  Identities=21%  Similarity=0.174  Sum_probs=100.3

Q ss_pred             chHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 037875           25 DTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRS  104 (204)
Q Consensus        25 ~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  104 (204)
                      .|||++|+..|+.+++++|++.|++     ++.++..|.||||+|+..++ .+++++|+..++ +++.++..|.||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-----~n~~~~~g~t~lh~A~~~~~-~~~~~~ll~~g~-din~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-----VNRTLEGGRKPLHYAADCGQ-LEILEFLLLKGA-DINAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-----CCCCSSSSCCTTHHHHHHST-TTHHHHHHHSSC-TTTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-----cccccccccccccccccccc-cccccccccccc-eeeecccccccchhhh
Confidence            5899999999999999999997766     88999999999999999999 899999999998 8999999999999999


Q ss_pred             HHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHH
Q 037875          105 ARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAV  145 (204)
Q Consensus       105 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  145 (204)
                      +..|+.+++++|+++|++++.       +|..|.||||+|.
T Consensus        76 ~~~~~~~~v~~Ll~~Gad~~~-------~d~~G~t~l~~a~  109 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGADKTV-------KGPDGLTALEATD  109 (118)
T ss_dssp             HTTTCCHHHHHHHTTCCCSSS-------SSSSTCCCCCTCS
T ss_pred             hhcCchhhhhhhhccccccee-------eCCCCCCHHHHHh
Confidence            999999999999999998876       6899999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.1e-24  Score=142.98  Aligned_cols=138  Identities=17%  Similarity=0.142  Sum_probs=124.2

Q ss_pred             HHHHHHHhhhccccc-cccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHH
Q 037875            5 VIEVCRKISDHALHV-LTVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLL   83 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~-~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll   83 (204)
                      ..+++++|+++|+++ .+..|.||||+|+..++.++++.++.....     ....+..+.++++.++...+ .++++++.
T Consensus        14 ~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~l~   87 (153)
T d1awcb_          14 QDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-----RDARTKVDRTPLHMAASEGH-ANIVEVLL   87 (153)
T ss_dssp             CHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCTTCCCHHHHHHHHTC-HHHHHHHH
T ss_pred             CHHHHHHHHHcCCCcccccCCCcccccccccccccccccccccccc-----cccccccccccccccccccc-ceeeeccc
Confidence            478999999999876 467899999999999999999999986544     55667778899999999998 89999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHH
Q 037875           84 RKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEI  156 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  156 (204)
                      ..+. +.+.++..|.||||+|+..|+.+++++|++.|++++.       +|..|.||||+|+..|+.++++.|
T Consensus        88 ~~~~-~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~-------~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          88 KHGA-DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-------QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCC-ccccccccCchHHHhhhhcchhheeeeccccccCCcc-------cCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9987 8888999999999999999999999999999999886       689999999999999999999754

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=1.9e-23  Score=153.23  Aligned_cols=142  Identities=18%  Similarity=0.263  Sum_probs=114.5

Q ss_pred             HHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhh----------------------------------
Q 037875            9 CRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYI----------------------------------   52 (204)
Q Consensus         9 ~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~----------------------------------   52 (204)
                      .+.+++.|++++  +.+|.||||+|+..|+.+++++|++.|++++.                                  
T Consensus        57 ~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  136 (277)
T d2fo1e1          57 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI  136 (277)
T ss_dssp             HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred             hhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccc
Confidence            456677887764  67899999999999999999999998876420                                  


Q ss_pred             -----------------------------------------hhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccc
Q 037875           53 -----------------------------------------HKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLG   91 (204)
Q Consensus        53 -----------------------------------------~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~   91 (204)
                                                               ...+..+..|.||||+++..++ .+.+++++.....+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~-~~~~~~~l~~~~~~~~  215 (277)
T d2fo1e1         137 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN-MPIVKYLVGEKGSNKD  215 (277)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC-HHHHHHHHHHSCCCTT
T ss_pred             cccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccc-cccccccccccccccc
Confidence                                                     0011112456777777777777 7777776655555777


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHH
Q 037875           92 MRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAK  158 (204)
Q Consensus        92 ~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  158 (204)
                      .++..|.||||+|+..|+.+++++|+++|++++.       +|..|+||||+|++.|+.++++.|++
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~-------~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA-------VDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC-------CCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            7889999999999999999999999999999887       68999999999999999999987764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-24  Score=139.18  Aligned_cols=116  Identities=14%  Similarity=0.098  Sum_probs=102.4

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCC-ccH
Q 037875           62 GNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQ-STV  140 (204)
Q Consensus        62 g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g-~t~  140 (204)
                      +.++||+|+..|+ .+++++|+++|+ +++.++..|.||+|.|+ .|+.+++++|+++|++++.       ++..+ .||
T Consensus         3 ~~~~L~~Aa~~G~-~~~v~~Ll~~ga-d~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~-------~~~~~~~~~   72 (125)
T d1bi7b_           3 SADWLATAAARGR-VEEVRALLEAGA-NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-------ADPATLTRP   72 (125)
T ss_dssp             STTHHHHHHHHTC-HHHHHHHHTTTC-CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-------CCTTTCCCH
T ss_pred             ChhHHHHHHHCCC-HHHHHHHHHcCC-ccccccccccccccccc-ccccccccccccccccccc-------ccccccccc
Confidence            4689999999999 999999999997 89999999999999774 7999999999999999886       35555 479


Q ss_pred             HHHHHHhCCHHHHHHHHHHhchhhcccCCCCCCHhHHhccCC--cchhhh
Q 037875          141 LHMAVISQHFELALEIAKEYKYLIGEKDMDGMTALQLLSCKP--EAFKLK  188 (204)
Q Consensus       141 l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~  188 (204)
                      ||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.++  ++.+++
T Consensus        73 L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          73 VHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccc-cccccccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999 59999999999999999998543  555544

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.5e-23  Score=135.60  Aligned_cols=117  Identities=15%  Similarity=0.154  Sum_probs=104.1

Q ss_pred             cHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHH
Q 037875           64 TVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHM  143 (204)
Q Consensus        64 ~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~  143 (204)
                      ++|+.|+..|+ .+++++|++.|+ +++.++..|+||||+|+..++.+++++|++.|++++.       +|..|+||||+
T Consensus         3 ~lL~~A~~~G~-~~~v~~Ll~~g~-d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~-------~d~~g~tpLh~   73 (130)
T d1ycsb1           3 ALLLDSSLEGE-FDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-------ADSDGWTPLHC   73 (130)
T ss_dssp             HHHHHHHHHTC-HHHHHHHTSTTS-SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-------CCTTCCCHHHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHcCC-Ccccccccccccccccccccccccccccccccccccc-------ccccCcccccc
Confidence            67899999999 999999999998 8999999999999999999999999999999998876       58999999999


Q ss_pred             HHHhCCHHHHHHHHHHhchhhcccC-CCCCCHhHHhc--cC--Ccchhhhhh
Q 037875          144 AVISQHFELALEIAKEYKYLIGEKD-MDGMTALQLLS--CK--PEAFKLKQE  190 (204)
Q Consensus       144 a~~~~~~~~~~~Ll~~~g~~~~~~~-~~g~t~l~~a~--~~--~~~~~~~~~  190 (204)
                      |+..|+.+++++|++ .|++++..+ ..|+||++++.  .+  .++.+++..
T Consensus        74 A~~~g~~~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          74 AASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             cchhhHHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            999999999999999 699999876 46899988874  33  466666544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.1e-22  Score=134.48  Aligned_cols=124  Identities=19%  Similarity=0.154  Sum_probs=106.3

Q ss_pred             HHHHHHhcCChHHHHHHHhhCchhhhh-hhcccccCCCcHHHHHHhc---CCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 037875           27 VLHMATYFKRDDLALKLLDEIPELYIH-KMTRQNKAGNTVLHATATS---SRALPVADKLLRKAPGLLGMRNNNGETALF  102 (204)
Q Consensus        27 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~~~~g~~~l~~a~~~---~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  102 (204)
                      .|..|+..++...+..++..|.+.... .....+..|.||||+|+..   +. .+++++|++.|+ +++.++..|.||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~-~~iv~~Ll~~ga-din~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS-LHIVDFLVQNSG-NLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT-HHHHHHHHHHCS-CTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCC-HHHHHHHHHcCC-Chhhhhhhhccccc
Confidence            456788899999999999987764321 1222366799999999975   44 789999999998 89999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHH
Q 037875          103 RSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKE  159 (204)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  159 (204)
                      +|+..|+.+++++|+++|++++.       +|..|.||||+|++.|+.++++.|++.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~-------~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEI-------ANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccccCccccc-------cCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999887       689999999999999999999988884

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=3.3e-25  Score=168.18  Aligned_cols=181  Identities=12%  Similarity=-0.008  Sum_probs=132.6

Q ss_pred             HHHHHHHHhhhcccccc--ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccc--cCCCcHHHHHHhcCCCHHHH
Q 037875            4 KVIEVCRKISDHALHVL--TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQN--KAGNTVLHATATSSRALPVA   79 (204)
Q Consensus         4 ~~~~~~~~l~~~~~~~~--~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--~~g~~~l~~a~~~~~~~~~~   79 (204)
                      +++++++.|++.|++++  +..|.||||+||..|+.++|++|++.|++     ++..+  ..|.||||+|+..|+ .++|
T Consensus       104 ~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-----~~~~~~~~~g~t~L~~Aa~~g~-~~iv  177 (346)
T d2ajaa1         104 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT-----EIMAMIQAENYHAFRLAAENGH-LHVL  177 (346)
T ss_dssp             HHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-----THHHHHSHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----ccccccccCCCChhHHHHHHhh-HHHH
Confidence            45667777899998765  66799999999999999999999998876     44443  468999999999999 9999


Q ss_pred             HHHHhhCCCc--cccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCC-------CC----------------------
Q 037875           80 DKLLRKAPGL--LGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQP-------SK----------------------  128 (204)
Q Consensus        80 ~~Ll~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~-------~~----------------------  128 (204)
                      ++|++.++..  .+..+.++.||++.|++.|+.+++++|++.|++++..       +.                      
T Consensus       178 ~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (346)
T d2ajaa1         178 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK  257 (346)
T ss_dssp             HHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHH
Confidence            9999988621  2333456678888899999999999999887643210       00                      


Q ss_pred             ------CccccC-------CCCccHHHHHHHhCCHHHHHHHHHHhchh-----hcccCCCCCCHhHHhcc--CCcchhhh
Q 037875          129 ------QPFLQR-------NDQSTVLHMAVISQHFELALEIAKEYKYL-----IGEKDMDGMTALQLLSC--KPEAFKLK  188 (204)
Q Consensus       129 ------~~~~~~-------~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~-----~~~~~~~g~t~l~~a~~--~~~~~~~~  188 (204)
                            ..+..+       ..+.++++.++..+..+++++|+. .+..     .+..+.+|.||||+|++  +.++.+++
T Consensus       258 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~-~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lL  336 (346)
T d2ajaa1         258 LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKALAPTATIPGDANELLRLALRLGNQGACALL  336 (346)
T ss_dssp             TTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT-STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred             HhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHh-CcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHH
Confidence                  000011       112467788888889999999988 3443     23445679999999984  55777777


Q ss_pred             hhc
Q 037875          189 QER  191 (204)
Q Consensus       189 ~~~  191 (204)
                      +..
T Consensus       337 L~~  339 (346)
T d2ajaa1         337 LSI  339 (346)
T ss_dssp             TTS
T ss_pred             hCC
Confidence            664

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-22  Score=146.44  Aligned_cols=136  Identities=19%  Similarity=0.147  Sum_probs=117.2

Q ss_pred             ccCCchHHHHHHhcCChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcC---CCHHHHHHHHhhCCCccccccCCC
Q 037875           21 TVHDDTVLHMATYFKRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSS---RALPVADKLLRKAPGLLGMRNNNG   97 (204)
Q Consensus        21 ~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~---~~~~~~~~Ll~~~~~~~~~~~~~~   97 (204)
                      ...|.||||+|+..|+.+++++|++.    .+++++..+..|.++...+...+   ...+++++|+++++ +++.++..|
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga-~~n~~~~~g  219 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDE----MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERG  219 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHT----SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTS
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhc----cCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCC-CCCccCCCC
Confidence            34689999999999999999999974    23348888889988877654443   32568999999998 789999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc-ccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCC
Q 037875           98 ETALFRSARYGKADIFNFLAGK-IADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDM  169 (204)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~  169 (204)
                      .||||.|++.|+.+++++|++. |++++.       +|..|.||||+|++.|+.+++++||+ .|+++|.+|.
T Consensus       220 ~t~L~~a~~~~~~~~v~~lL~~~g~din~-------~d~~G~TpL~~A~~~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         220 KTPLILAVEKKHLGLVQRLLEQEHIEIND-------TDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHSSSCCTTC-------CCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             CCccchhhhcCcHHHHHHHHHcCCCCCcC-------CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccC
Confidence            9999999999999999999985 777776       68999999999999999999999999 6999999874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=9.5e-25  Score=165.65  Aligned_cols=138  Identities=14%  Similarity=0.096  Sum_probs=110.9

Q ss_pred             cccCCchHHHHHHhcCChHHHHH---HHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCcccccc--
Q 037875           20 LTVHDDTVLHMATYFKRDDLALK---LLDEIPELYIHKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRN--   94 (204)
Q Consensus        20 ~~~~~~~~L~~A~~~~~~~~v~~---Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~--   94 (204)
                      ++..|.|||++||+.|+.+++++   |++.|++     ++.++..|.||||+|+..|+ .++|++|++.|+ +++..+  
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-----in~~~~~g~taL~~Aa~~G~-~~~v~~Ll~~g~-~~~~~~~~  158 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-----VKVIQAENYQAFRLAAENGH-LHVLNRLCELAP-TEIMAMIQ  158 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-----CC--CHHHHHHHHHHHHTTC-HHHHHHHHHSCT-TTHHHHHS
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-----ccccCCCCCCHHHHHHHCCC-HHHHHHHHHcCC-Cccccccc
Confidence            35578999999999999988776   6775655     88999999999999999999 999999999998 676654  


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHHHHHHHhchhhcccCC
Q 037875           95 NNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELALEIAKEYKYLIGEKDM  169 (204)
Q Consensus        95 ~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~g~~~~~~~~  169 (204)
                      ..|.||||+|+..|+.+++++|++.|++...    .+..+..+.||++.|+..|+.+++++|++ .|++++..+.
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~----~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~-~ga~~~~~~~  228 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTEAT----AMIQAENYYAFRWAAVGRGHHNVINFLLD-CPVMLAYAEI  228 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHHHHHHHHH
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCcccc----cccccCCCcchhhHHhhcCHHHHHHHHHh-CCCCcchHHH
Confidence            4689999999999999999999998775321    11123456788888999999999999998 6988875543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-21  Score=137.99  Aligned_cols=137  Identities=15%  Similarity=0.124  Sum_probs=113.7

Q ss_pred             HHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchhhh----------------------------------
Q 037875            9 CRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPELYI----------------------------------   52 (204)
Q Consensus         9 ~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~----------------------------------   52 (204)
                      ++.+.+.|+++  .+..|.||||+|+..|+.+++++|++.|++...                                  
T Consensus        23 l~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  102 (228)
T d1k1aa_          23 VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD  102 (228)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC
T ss_pred             HHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccc
Confidence            34444567654  577899999999999999999999998866420                                  


Q ss_pred             --------------------------------hhhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcH
Q 037875           53 --------------------------------HKMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETA  100 (204)
Q Consensus        53 --------------------------------~~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  100 (204)
                                                      .........+.++++.|+..+. ..+++.++..+. ..+.++..|.||
T Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~~~~~~~-~~~~~d~~g~t~  180 (228)
T d1k1aa_         103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS-LSMVQLLLQHGA-NVNAQMYSGSSA  180 (228)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC-HHHHHHHHHTTC-CTTCBCTTSCBH
T ss_pred             ccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh-hhhhhhhhhhcc-ccccccccCcch
Confidence                                            0001112568899999999998 899999999887 788899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcccCCCCCCCCccccCCCCccHHHHHHHhCCHHHHH
Q 037875          101 LFRSARYGKADIFNFLAGKIADYDQPSKQPFLQRNDQSTVLHMAVISQHFELAL  154 (204)
Q Consensus       101 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  154 (204)
                      ||+|+..|+.+++++|+++|++++.       +|..|+||||+|++.|+.++++
T Consensus       181 L~~A~~~g~~~~v~~Ll~~Gad~n~-------~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         181 LHSASGRGLLPLVRTLVRSGADSSL-------KNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-------CCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCC-------CCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999999886       6899999999999999988874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=4.5e-21  Score=128.78  Aligned_cols=107  Identities=20%  Similarity=0.231  Sum_probs=93.4

Q ss_pred             HHHhhhcccccc--------ccCCchHHHHHHhc---CChHHHHHHHhhCchhhhhhhcccccCCCcHHHHHHhcCCCHH
Q 037875            9 CRKISDHALHVL--------TVHDDTVLHMATYF---KRDDLALKLLDEIPELYIHKMTRQNKAGNTVLHATATSSRALP   77 (204)
Q Consensus         9 ~~~l~~~~~~~~--------~~~~~~~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~   77 (204)
                      +..++..|.++.        +..|.||||+|+..   +..+++++|++.|++     ++.++..|.||||+|+..++ .+
T Consensus        22 l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----in~~d~~g~TpLh~A~~~~~-~~   95 (154)
T d1dcqa1          22 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-----LDKQTGKGSTALHYCCLTDN-AE   95 (154)
T ss_dssp             HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-----TTCCCTTCCCHHHHHHHTTC-HH
T ss_pred             HHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-----hhhhhhhhcccccccccccc-cc
Confidence            444556665532        45689999999974   678999999997766     89999999999999999999 99


Q ss_pred             HHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccC
Q 037875           78 VADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIAD  122 (204)
Q Consensus        78 ~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~  122 (204)
                      ++++|+++|+ +++.++..|.||||+|++.|+.+++++|++.+..
T Consensus        96 ~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          96 CLKLLLRGKA-SIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccCc-cccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999998 8999999999999999999999999999998764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=3.1e-20  Score=130.65  Aligned_cols=143  Identities=17%  Similarity=0.162  Sum_probs=116.0

Q ss_pred             HHHHHHHhhhccccc--cccCCchHHHHHHhcCChHHHHHHHhhCchh-----------------------------hhh
Q 037875            5 VIEVCRKISDHALHV--LTVHDDTVLHMATYFKRDDLALKLLDEIPEL-----------------------------YIH   53 (204)
Q Consensus         5 ~~~~~~~l~~~~~~~--~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~-----------------------------~~~   53 (204)
                      ..+++++|+..|.++  .+..+.++++.++..++..............                             .+.
T Consensus        35 ~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  114 (209)
T d1ot8a_          35 RADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA  114 (209)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTC
T ss_pred             CHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence            467889999988754  4566777777777766665444433211100                             123


Q ss_pred             hhcccccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCHHHHHHHHhcccCCCCCCCCcccc
Q 037875           54 KMTRQNKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKADIFNFLAGKIADYDQPSKQPFLQ  133 (204)
Q Consensus        54 ~~~~~~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  133 (204)
                      .++..+..|.||+++++..+. ..+++.++..+. +++..+..|.||||+|+..|+.+++++|+++|++++.       +
T Consensus       115 ~~~~~~~~~~t~l~~~~~~~~-~~~~~~l~~~~~-~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~-------~  185 (209)
T d1ot8a_         115 DINAADNSGKTALHWAAAVNN-TEAVNILLMHHA-NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI-------T  185 (209)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTC-HHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------C
T ss_pred             cccccCCCCCCcchhhcccCc-ceeeeeeccccc-cccccccccccccchhccccHHHHHHHHHHCCCCCCC-------c
Confidence            467788999999999999998 899999999987 7899999999999999999999999999999999886       5


Q ss_pred             CCCCccHHHHHHHhCCHHHHHHH
Q 037875          134 RNDQSTVLHMAVISQHFELALEI  156 (204)
Q Consensus       134 ~~~g~t~l~~a~~~~~~~~~~~L  156 (204)
                      |..|+||||+|++.|+.+++++|
T Consensus       186 d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         186 DHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHhhc
Confidence            89999999999999999999764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.9e-18  Score=128.19  Aligned_cols=137  Identities=18%  Similarity=0.221  Sum_probs=101.2

Q ss_pred             hhhhccc-ccCCCcHHHHHHhcCCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCH-------HHHHHHHhcccCC
Q 037875           52 IHKMTRQ-NKAGNTVLHATATSSRALPVADKLLRKAPGLLGMRNNNGETALFRSARYGKA-------DIFNFLAGKIADY  123 (204)
Q Consensus        52 ~~~~~~~-~~~g~~~l~~a~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~-------~~~~~L~~~~~~~  123 (204)
                      +.++|.. |..|.||||+|+..|+ .++|++|++.|+ +++.++..|+||||.|+..++.       ++++++.+.    
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~-~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----  169 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIAN-LELVKHLVKHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----  169 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTC-HHHHHHHHHTTC-CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCC-HHHHHHHHHCCC-CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----
Confidence            3346655 8899999999999999 999999999998 8999999999999999987652       334444332    


Q ss_pred             CCCCCCccccCCCCccHHHHHHHhCC----HHHHH--------HHHHHh-------------------------------
Q 037875          124 DQPSKQPFLQRNDQSTVLHMAVISQH----FELAL--------EIAKEY-------------------------------  160 (204)
Q Consensus       124 ~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~--------~Ll~~~-------------------------------  160 (204)
                            ...++..|+||||+++..+.    ...++        +++...                               
T Consensus       170 ------~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
T d1sw6a_         170 ------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  243 (301)
T ss_dssp             ------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             ------hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh
Confidence                  12257889999998886443    22222        222211                               


Q ss_pred             -----chhhcccCCCCCCHhHHhc--cCCcchhhhhhccchhhhhcc
Q 037875          161 -----KYLIGEKDMDGMTALQLLS--CKPEAFKLKQERGFFKKLLHF  200 (204)
Q Consensus       161 -----g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~g~~~~~~~~  200 (204)
                           +..+|.+|..|+||||+|+  .+.++++.+++.|+...+-..
T Consensus       244 ~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~  290 (301)
T d1sw6a_         244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  290 (301)
T ss_dssp             HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             hHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence                 1126888999999999998  456888999999988766543