Citrus Sinensis ID: 037889

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQITKTDHVMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDTAVTCCGVCAVCKSQREQTQHFYSQFCYRKLEIG
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccccccccccccEEEEEccccccccccEEEEEEEEEccccccccccEEEEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEcccccccccccEEEEEEEEEEEccccEEEEEEEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccHcHHHHcEEEcccccccccccccccccccEEEEccccccEEccccHHccHcccEEEccccccHHccccccHHccEEEccccccHccccccccccHEEccccccccEEcccccccHHHHHHcccEEEccccHHHcHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccHHccccccccEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEEEEEcccccccEEEccccccccccccccEEEEEEcccccccccccccccEEEEEEEEccccEEEEcEEEEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
gcrslvtiPASILssglssldrldlrgcgltaipqeigclsslkeldicenNFESLPASIMQLSRLTYLYLSKCNmllslpelslslkwldasnckrlqslpeipsslEEVDASVFEKLSkhshydeneraYVSSSIEFWftnsmklddeannknlaDSQLRIQHMAIASLRLFSElaepcilkgpiivlpgseipewfsnqssgsqitlqlpqhCCQNLAGFALCAVLErsdsewaefdvgcrysfemktlsgrkhvrrCCVMasyqitktdhvmlgfrpcgnvgfpddnlhttvsfnffsnsdtavtccgvcavcksqreQTQHFYSQFCYRKLEIG
Flexible Loop (DISEMBL)
GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLskhshydeneraYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEmktlsgrkhvrRCCVMASYQITKTDHVMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDTAVTCCGVCAVCKSQREQTQHFYSQFcyrkleig
Low Complexity Region (SEG)
GCRSLVTIPASIlssglssldrldlrgCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMllslpelslslkwlDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQITKTDHVMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDtavtccgvcavcKSQREQTQHFYSQFCYRKLEIG
Disordered region (IsUnstruct)
*****VTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRL*******************************RAYVSSSIEFWFTNSMKL********LADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQITKTDHVMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDTAVTCCGVCAVCKSQREQTQHFYSQFCYRKL***
Disordered Region (DISOPRED)
GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQITKTDHVMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDTAVTCCGVCAVCK*********************
Disordered Region (DISEMBL)
GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQITKTDHVMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDTAVTCCGVCAVCKSQREQTQHFYSQFCYRKLEIG
Disordered Region (DISPRO)
GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQITKTDHVMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDTAVTCCGVCAVCKSQ*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQITKTDHVMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDTAVTCCGVCAVCKSQREQTQHFYSQFCYRKLEIG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.560	0.166	0.307	1e-15
Q9Y4C4	1052	Malignant fibrous histioc	yes	no	0.274	0.088	0.394	5e-07
Q1ZXD6	2800	Probable serine/threonine	yes	no	0.174	0.021	0.516	5e-07
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.309	0.080	0.356	2e-06
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.300	0.055	0.383	2e-06
Q3V1N1	1048	Malignant fibrous histioc	yes	no	0.244	0.079	0.402	3e-06
Q80VQ1	524	Leucine-rich repeat-conta	no	no	0.233	0.150	0.426	3e-06
B5DX45	629	Leucine-rich repeat prote	no	no	0.315	0.170	0.365	4e-06
B4LXW1	614	Leucine-rich repeat prote	N/A	no	0.315	0.174	0.365	4e-06
B4N9T4	641	Leucine-rich repeat prote	N/A	no	0.315	0.166	0.365	5e-06

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 44/234 (18%)

Query: 1    GCRSLVTIPASILSSGLSSLDRLDLRGCGLT--AIPQEIGCLSSLKELDICENNFESLPA 58
            G +  V      ++ GL SL+ L+L  C L    +P+EIG LSSLK+LD+  NNFE LP+
Sbjct: 816  GFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPS 875

Query: 59   SIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEK 118
            SI QL                      +L+ LD  +C+RL  LPE+P  L E+       
Sbjct: 876  SIAQLG---------------------ALQSLDLKDCQRLTQLPELPPELNELHVDCHMA 914

Query: 119  LSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELA 178
            L K  HY   +R  +         + +KLDD A+N  + +         I+S+R     +
Sbjct: 915  L-KFIHYLVTKRKKL---------HRVKLDD-AHNDTMYNLFAYTMFQNISSMRHDISAS 963

Query: 179  EPCILKGPIIVLPG----SEIPEWFSNQSSGSQITLQLPQ--HCCQNLAGFALC 226
            +   L     V  G     +IP WF +Q   S +++ LP+  +      GFA+C
Sbjct: 964  DSLSL----TVFTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 11/104 (10%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           L T+PA      L+SL+ L L   GL A+P +  CL  LK L++  N FE  PA+++ L+
Sbjct: 239 LGTLPAGFCE--LASLESLMLDNNGLQALPAQFSCLQRLKMLNLSSNLFEEFPAALLPLA 296

Query: 65  RLTYLYLSKCNMLLSLPELSLSLK-----WLDASNCKRLQSLPE 103
            L  LYLS+ N L S+P L   L      WLD +   R++ LP+
Sbjct: 297 GLEELYLSR-NQLTSVPSLISGLGRLLTLWLDNN---RIRYLPD 336

Homo sapiens (taxid: 9606)

>sp|Q1ZXD6|ROCO5_DICDI Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum GN=roco5 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 22   RLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81
            +LDL  CGL+A+P EIG +SSL ELD+  N  + LP  I +LS L  L LS  N + SLP
Sbjct: 1133 KLDLSDCGLSALPIEIGSISSLIELDLTNNRIKDLPPQIGKLSSLQTLNLSN-NAIESLP 1191

May act as a serine/threonine-protein kinase and guanine-nucleotide releasing factor.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 27/132 (20%)

Query: 2   CRSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDI------------ 48
           C+SLVT+P++I    L  L RL+++ C GL  +P ++  LSSL+ LD+            
Sbjct: 806 CKSLVTLPSTI--GNLHRLVRLEMKECTGLEVLPTDVN-LSSLETLDLSGCSSLRSFPLI 862

Query: 49  --------CENN-FESLPASIMQLSRLTYLYLSKCNMLLSLP-ELSLS-LKWLDASNCKR 97
                    EN   E +P++I  L RL  L + KC  L  LP +++LS L+ LD S C  
Sbjct: 863 STNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSS 922

Query: 98  LQSLPEIPSSLE 109
           L+S P I  S++
Sbjct: 923 LRSFPLISESIK 934

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
           SL T+PA   S  L+ L+ L+LR   L  +P+ I  L+ LK LD+ +N  E LP  +  L
Sbjct: 140 SLTTLPADFGS--LTQLESLELRENLLKHLPETISQLTKLKRLDLGDNEIEDLPPYLGYL 197

Query: 64  SRLTYLYLSKCNMLLSLPELSL--SLKWLDASNCKRLQSLPEIPSSL 108
             L  L+L    +    PEL L   L +LD S   RL+ LP   S L
Sbjct: 198 PGLHELWLDHNQLQRLPPELGLLTKLTYLDVSE-NRLEELPNEISGL 243

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|Q3V1N1|MFHA1_MOUSE Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Mus musculus GN=Mfhas1 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
           L+SL+ L L   GL A+P E   L  LK L++  N FE  PA+++ L+ L  LYLS+ N 
Sbjct: 245 LASLESLMLDNNGLQALPDEFSRLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSR-NQ 303

Query: 77  LLSLPELSLSLK-----WLDASNCKRLQSLPE 103
           L S+P L   L      WLD +   R++ LP+
Sbjct: 304 LTSVPSLIAGLGRLLTLWLDNN---RIRYLPD 332

Mus musculus (taxid: 10090)

>sp|Q80VQ1|LRRC1_MOUSE Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASI 60
           G   +  +P SI    L  L  L L G  L+ +PQEIG L +L  LD+ EN  E LP  I
Sbjct: 182 GNNEIYNLPESI--GALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEI 239

Query: 61  MQLSRLTYLYLSKCNMLLSLPE 82
             L+ LTYL +S+ N+L ++PE
Sbjct: 240 SGLTSLTYLVISQ-NLLETIPE 260

Mus musculus (taxid: 10090)

>sp|B5DX45|SUR8_DROPS Leucine-rich repeat protein soc-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sur-8 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
           L  L RL L+   +T +P+ IG LS+L  L + ENN + LP  I  L  L  LY+++   
Sbjct: 518 LHELQRLILQTNQITMLPRSIGHLSNLTHLSVSENNLQFLPEEIGSLEGLENLYINQNPG 577

Query: 77  LLSLP-ELSL--SLKWLDASNCKRLQSLPEIPSSLEEVDAS-VFEKLSKHSHYDE 127
           L  LP EL+L  +LK+L+   C     L  IP  ++    S V + L  HS Y +
Sbjct: 578 LEKLPFELALCQNLKYLNIDKC----PLSTIPPEIQAGGPSLVLQWLKMHSPYRQ 628

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4LXW1|SUR8_DROVI Leucine-rich repeat protein soc-2 homolog OS=Drosophila virilis GN=Sur-8 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
           L  L RL L+   +T +P+ IG LS+L  L + ENN + LP  I  L  L  LY+++   
Sbjct: 503 LHELQRLILQTNQITMLPRSIGHLSNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPG 562

Query: 77  LLSLP-ELSL--SLKWLDASNCKRLQSLPEIPSSLEEVDAS-VFEKLSKHSHYDE 127
           L  LP EL+L  +LK+L+   C     L  IP  ++    S V + L  HS Y +
Sbjct: 563 LEKLPFELALCQNLKYLNIDKC----PLGTIPPEIQAGGPSLVLQWLKMHSPYRQ 613

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila virilis (taxid: 7244)

>sp|B4N9T4|SUR8_DROWI Leucine-rich repeat protein soc-2 homolog OS=Drosophila willistoni GN=Sur-8 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
           L  L RL L+   +T +P+ IG LS L  L + ENN + LP  I  L  L  LY+++   
Sbjct: 530 LHELQRLILQTNQITMLPRSIGHLSQLTHLSVSENNLQFLPEEIGSLESLENLYINQNPG 589

Query: 77  LLSLP-ELSL--SLKWLDASNCKRLQSLPEIPSSLEEVDAS-VFEKLSKHSHYDE 127
           L  LP EL+L  +LK+L+   C     L  IP  ++    S V + L  HS Y +
Sbjct: 590 LEKLPFELALCQNLKYLNIDKC----PLSTIPPEIQAGGPSLVLQWLKMHSPYRQ 640

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila willistoni (taxid: 7260)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.684	0.161	0.361	6e-26
255563202	1158	leucine-rich repeat containing protein,	0.660	0.193	0.333	7e-25
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.669	0.154	0.338	4e-24
255537139	1137	leucine-rich repeat-containing protein,	0.858	0.255	0.311	9e-24
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.672	0.181	0.342	1e-23
224103133	397	predicted protein [Populus trichocarpa]	0.684	0.584	0.340	2e-23
255544956	1403	leucine-rich repeat containing protein,	0.663	0.160	0.338	8e-23
297794743	1184	predicted protein [Arabidopsis lyrata su	0.778	0.222	0.326	4e-22
147828597	1500	hypothetical protein VITISV_003859 [Viti	0.752	0.17	0.306	7e-22
359493273	1233	PREDICTED: TMV resistance protein N-like	0.834	0.229	0.307	7e-21

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/271 (36%), Positives = 133/271 (49%), Gaps = 39/271 (14%)

Query: 17   LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
            L  L +L+L GC L+ +P  +G LSSL+ LD+  NN  ++P SI +L  L YL L  C  
Sbjct: 993  LDCLRKLNLDGCSLSEVPDSLGLLSSLEVLDLSGNNLRTIPISINKLFELQYLGLRNCKR 1052

Query: 77   LLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSS 136
            L SLPEL   L  LD  NC+ L  L    S++  V+ ++F                    
Sbjct: 1053 LQSLPELPPRLSKLDVDNCQSLNYLVSRSSTV--VEGNIF-------------------- 1090

Query: 137  IEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPI-IVLPGSEI 195
             EF FTN ++L     N+ L  S L+ Q   + + RL+ +L  P + +G     LPG   
Sbjct: 1091 -EFIFTNCLRL--PVVNQILEYSLLKFQ---LYTKRLYHQL--PDVPEGACSFCLPGDVT 1142

Query: 196  PEWFSNQSSGSQITLQLPQHCCQN-LAGFALCAVLE-RSDSEWAEFDVGCRYSFEMKTLS 253
            PEWFS+QS GS  T QL  H   +   GF+LCAV+  RS S      V C Y F  +   
Sbjct: 1143 PEWFSHQSWGSIATFQLSSHWVNSEFLGFSLCAVIAFRSISH--SLQVKCTYHF--RNEH 1198

Query: 254  GRKHVRRCCVMASYQITKTD--HVMLGFRPC 282
            G  H R C +   Y   + D  H+ +GF PC
Sbjct: 1199 GDSHDRYCYLYGWYDEKRIDSAHIFVGFDPC 1229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 133/252 (52%), Gaps = 28/252 (11%)

Query: 2    CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM 61
            C  L  +P ++    L SL  L   GC L+ +P ++  LSS+ EL++  +NF+++PA I 
Sbjct: 825  CSKLGKLPKNM--KNLKSLAELRAGGCNLSTLPADLKYLSSIVELNLSGSNFDTMPAGIN 882

Query: 62   QLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
            QLS+L ++ ++ C  L SLPEL   +++L+A +C+ L S+    S L++    +FE    
Sbjct: 883  QLSKLRWINVTGCKRLQSLPELPPRIRYLNARDCRSLVSI----SGLKQ----LFELGCS 934

Query: 122  HSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPC 181
            +S  DE           F FTN  KLD +     LA +QL+IQH A+       EL +  
Sbjct: 935  NSLDDET----------FVFTNCFKLDQDNWADILASAQLKIQHFAMGRKHYDRELYDET 984

Query: 182  ILKGPIIVLPGSEIPEWFSNQSSGSQITLQL--PQHCCQNLAGFALCAVLERSDS---EW 236
             +       PG+EIPEWF+++S GS +T+Q   P        GF++C V+   D    E+
Sbjct: 985  FI---CFTYPGTEIPEWFADKSIGSSVTIQHLPPDWLNHRFLGFSVCLVVAFDDRFLCEY 1041

Query: 237  AEFDVGCRYSFE 248
                V C+ +F+
Sbjct: 1042 PRGVVACKCNFQ 1053

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 129/275 (46%), Gaps = 48/275 (17%)

Query: 17   LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
            L  L +L+L GC ++ +P  +GCLSSL+ LD+  NNF ++P SI +LS L YL L  C  
Sbjct: 954  LDYLRKLNLDGCHISVVPDSLGCLSSLEVLDLSGNNFSTIPLSINKLSELQYLGLRNCKR 1013

Query: 77   LLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSS 136
            L SLPEL   L  LDA NC+ L  L    S++  V  ++F                    
Sbjct: 1014 LESLPELPPRLSKLDADNCESLNYLGSSSSTV--VKGNIF-------------------- 1051

Query: 137  IEFWFTNSMKLDDEANNKNLADSQLRIQHM---AIASLRLFSELAEPC--ILKGPI-IVL 190
             EF FTN + L              RI  +   A+   RL+++       +L+G     L
Sbjct: 1052 -EFIFTNCLSL-------------CRINQILPYALKKFRLYTKRLHQLTDVLEGACSFFL 1097

Query: 191  PGSEIPEWFSNQSSGSQITLQLPQHCCQN-LAGFALCAVLERSDSEWAEFDVGCRYSFEM 249
            PG   P+W S+QS GS +T QL  H   +   GF+LCAV+    S      V C Y F  
Sbjct: 1098 PGGVSPQWLSHQSWGSTVTCQLSSHWANSKFLGFSLCAVIA-FHSFGHSLQVKCTYHFSN 1156

Query: 250  KTLSGRKHVRRCCVMASYQITKTD--HVMLGFRPC 282
            +   G  H   C +   Y   + D  H+++GF PC
Sbjct: 1157 E--HGDSHDLYCYLHGWYDEKRIDSEHILVGFDPC 1189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 167/344 (48%), Gaps = 53/344 (15%)

Query: 1    GCRSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICENNFESLPAS 59
             CR+L  +P S  +  L +L  L L  C  L  +P+++  L++L++L +   N   LP+ 
Sbjct: 753  NCRNLAHLPESFCN--LKALYWLFLTFCPKLEKLPEKLSNLTTLEDLSVGVCNLLKLPSH 810

Query: 60   IMQLSRLTYLYLSKCNMLLSLPELS--LSLKWLDASNCKRLQSLPEIPSSLEEVDA---- 113
            +  LS ++ L LS  N    LP     L+L+ LD S+C+RL+SLPE+P SL ++DA    
Sbjct: 811  MNHLSCISKLDLSG-NYFDQLPSFKYLLNLRCLDISSCRRLRSLPEVPHSLTDIDAHDCR 869

Query: 114  ---------SVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQ 164
                      +F+    H+ YD+          +  FT+  K+D+ A +  LAD+Q  IQ
Sbjct: 870  SLETISGLKQIFQLKYTHTFYDK----------KIIFTSCFKMDESAWSDFLADAQFWIQ 919

Query: 165  HMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQL-PQHCCQNLAGF 223
             +A   +R   E       +   I  PGS+IP+WF  QS GS I +QL P+    NL GF
Sbjct: 920  KVA---MRAKDE-------ESFSIWYPGSKIPKWFGYQSEGSSIVIQLHPRSHKHNLLGF 969

Query: 224  ALCAVLERSDS-EWAE--FDVGCRYSFEMKTLSGRK------HVRRCCVMASYQITKTDH 274
             LC VL   D  E+    FDV C Y  ++K   G        +  R  V    +   +DH
Sbjct: 970  TLCVVLAFEDEFEYHNSFFDVLCVY--QLKNYRGEYTDCKEVYSSRTHVSGKNKYVGSDH 1027

Query: 275  VMLGFRPCGNVGFPDDNLHTTVSFNFFSNSDTAVTCCGVCAVCK 318
            V+L + P  +    ++  +   SF F+  ++   +CC   ++ K
Sbjct: 1028 VILFYDPNFSSTEANELSYNEASFEFYWQNNE--SCCMQSSMVK 1069

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/269 (34%), Positives = 126/269 (46%), Gaps = 41/269 (15%)

Query: 17   LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
            L  L +L+L GC ++ +P  +GCLSSL+ LD+  NNFE++P +I +L  L YL L  C  
Sbjct: 918  LKYLRKLNLDGCCISKVPDSLGCLSSLEVLDLSGNNFETMPMNIYKLVELQYLGLRSCRK 977

Query: 77   LLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSS 136
            L S+P L   L  LDA +C   QSL ++ SS   V+ ++F                    
Sbjct: 978  LKSIPRLPRRLSKLDAHDC---QSLIKVSSSY-VVEGNIF-------------------- 1013

Query: 137  IEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIP 196
             EF FTN ++L     N+ L  S L+ Q        L++E             LPG   P
Sbjct: 1014 -EFIFTNCLRL--PVINQILLYSLLKFQ--------LYTERLHQVPAGTSSFCLPGDVTP 1062

Query: 197  EWFSNQSSGSQITLQLPQHCCQN-LAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGR 255
            EWFS+QS GS +T  L  H   +   GF+L AV+    S      V C Y F  K   G 
Sbjct: 1063 EWFSHQSWGSTVTFHLSSHWANSEFLGFSLGAVIAFR-SFGHSLQVKCTYHFRNK--HGD 1119

Query: 256  KHVRRCCVMASYQITKTD--HVMLGFRPC 282
             H   C +   Y   + D  H+ +GF PC
Sbjct: 1120 SHDLYCYLHGWYDERRMDSEHIFIGFDPC 1148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103133|ref|XP_002334087.1| predicted protein [Populus trichocarpa] gi|222869543|gb|EEF06674.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 133/270 (49%), Gaps = 38/270 (14%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
           L  L +L+L GC L+ +P  +G LSSL+ LD+  NN  ++P S+ +L  L YL L  C  
Sbjct: 56  LDCLRKLNLDGCSLSKVPGSLGRLSSLEVLDLSGNNLRTIPISMNKLFELQYLGLRNCRR 115

Query: 77  LLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSS 136
           L SLPEL   L  LDA +C++L++   + SS   V+ ++F                    
Sbjct: 116 LESLPELPPRLSKLDAHDCQKLRT---VSSSSTGVEGNIF-------------------- 152

Query: 137 IEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGP-IIVLPGSEI 195
            EF FT   +L +   N+ LA S L+ Q   + + RL  +L  P + +G     LPG   
Sbjct: 153 -EFIFTRCSRLRE--TNQMLAYSLLKFQ---LYTKRLCHQL--PDVPEGACTFCLPGDVT 204

Query: 196 PEWFSNQSSGSQITLQLPQHCCQN-LAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSG 254
           PEWFS+QS GS +T QL  +   N   GF LCAV+           V C Y F  +   G
Sbjct: 205 PEWFSHQSWGSTVTFQLSSYWANNEFLGFCLCAVIAFRSFRHG-LQVKCTYHFSNE--HG 261

Query: 255 RKHVRRCCVMASY--QITKTDHVMLGFRPC 282
             H   C +   Y  +  +++H+ +GF PC
Sbjct: 262 DSHDLYCYLHGWYDEKCIESEHIFVGFDPC 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 124/251 (49%), Gaps = 26/251 (10%)

Query: 2    CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM 61
            C  L  +P+    SG SSL  L L   G+  +P  +G LSSL+ L +  NNF  +PA+I 
Sbjct: 998  CTKLSKLPSL---SGCSSLRDLVLSYSGIVKVPGSLGYLSSLQVLLLKGNNFMRIPATIR 1054

Query: 62   QLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
            QLS L  L +S C  L +LPEL   ++ L A NC          +SL+ V + + +    
Sbjct: 1055 QLSWLEVLDISYCKRLKALPELPQRIRVLVAHNC----------TSLKTVSSPLIQ---- 1100

Query: 122  HSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPC 181
               + E++         F F N + L+  A +  +  + L+ QH+A A L L +   E  
Sbjct: 1101 ---FQESQEQSPDDKYGFTFANCVSLEKNARSNIVESALLKTQHLATAVLELLTSYEE-- 1155

Query: 182  ILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQN-LAGFALCAVLERSDSEWAE-- 238
            IL  P++  PGSEIPE F  Q++G+ +T  LP     N L GF  CAV+E  +  + +  
Sbjct: 1156 ILVSPVVCFPGSEIPECFRYQNTGASVTTLLPSKWHNNKLVGFTFCAVIELENRHYQDGF 1215

Query: 239  -FDVGCRYSFE 248
             F   CR   E
Sbjct: 1216 TFQCDCRIENE 1226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794743|ref|XP_002865256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311091|gb|EFH41515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 143/315 (45%), Gaps = 51/315 (16%)

Query: 15   SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
            SG S L  L L  C L  +P    CLSS+  L +  NN E LP SI  L  L  L L  C
Sbjct: 734  SGCSHLSDLYLTDCNLHKLPNNFSCLSSVHSLCLSRNNLEYLPESIKILHHLKSLDLKHC 793

Query: 75   NMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVS 134
              L SLP L  +L++LDA +C          +SLE V   +       +H    ER   +
Sbjct: 794  RKLNSLPVLPSNLQYLDAHDC----------ASLETVANPM-------THLVLAERVQST 836

Query: 135  SSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSE--LAEPCILKGPIIVLPG 192
                F FT+  KL+ EA    +A +QL+ Q +A A L+   +  + EP       +  PG
Sbjct: 837  ----FLFTDCFKLNREAQENIVAHAQLKSQILANACLKRNHKGLVLEPL----ASVSFPG 888

Query: 193  SEIPEWFSNQSSGSQITLQLPQHCCQN-LAGFALCAVLERSDSE--WAEFDVGCRYSFEM 249
            S++P WF NQ  G+ I   LP H C +   G +LC V+   D E   + F V C+  F+ 
Sbjct: 889  SDLPLWFRNQRMGTSIDTHLPPHWCDSKFRGLSLCVVVSFKDYEDQTSRFSVICKCKFKS 948

Query: 250  K---------TLSGRKHVRRCCVMASYQITK--TDHVMLGFRPCGNV-GFPDDN------ 291
            +         TL G     + C  + +Q  K  +DHV L +  C +V  F +D       
Sbjct: 949  ESGDCIRFICTLGG---WNKLCGSSGHQSRKLGSDHVFLSYNNCFHVKKFREDGNDNNRC 1005

Query: 292  LHTTVSFNFFSNSDT 306
             +T  SF FF   D+
Sbjct: 1006 CNTAASFKFFVTDDS 1020

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828597|emb|CAN68630.1| hypothetical protein VITISV_003859 [Vitis vinifera]

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 147/320 (45%), Gaps = 65/320 (20%)

Query: 23   LDLRGCGLT--AIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSL 80
            LDL  C L   AIP  I  L SLK+LD+ +NNF S+PA I +L+ L  L L +C  L  +
Sbjct: 1156 LDLSDCKLIEGAIPNGICSLISLKKLDLSQNNFLSIPAGISELTNLEDLRLGQCQSLTGI 1215

Query: 81   PELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFW 140
            PEL LSL+ +DA NC  L       S+L+                           ++F 
Sbjct: 1216 PELPLSLRDIDAHNCTALLPGSSSVSTLQ--------------------------GLQFL 1249

Query: 141  FTN-SMKLDDEANNKNLADSQLRIQHMAIASLRLFSEL-AEPCILKGPI------IVLPG 192
            F N S  ++D++++    + QL   H+ ++S    S +   P +++  +      IV PG
Sbjct: 1250 FYNCSKPVEDQSSDDKRTELQL-FPHIYVSSTASDSSVTTSPVMMQKLLENIAFSIVFPG 1308

Query: 193  SEIPEWFSNQSSGSQITLQLPQHC-CQNLAGFALCAVLERSDSEWA------EFDVGCRY 245
            + IPEW  +Q+ GS I +QLP      +  GFALC+VLE              FD G   
Sbjct: 1309 TGIPEWIWHQNVGSSIKIQLPTDWYSDDFLGFALCSVLEHLPERIICHLNSDVFDYG--- 1365

Query: 246  SFEMKTLSGRKHVRRCCVMASYQITKTDHVMLGFRPCGNVGF-----PDDNLHTTVSF-- 298
              ++K      H        +  I  ++HV LG++PC  +       P++  H  +SF  
Sbjct: 1366 --DLKDFGHDFH-------WTGDIVGSEHVWLGYQPCSQLRLFQFNDPNEWNHIEISFEA 1416

Query: 299  --NFFSNSDTAVTCCGVCAV 316
               F S++   V  CGVC +
Sbjct: 1417 AHRFNSSASNVVKKCGVCLI 1436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 147/325 (45%), Gaps = 42/325 (12%)

Query: 15   SGLSSLDRLDLRGCGLT--AIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLS 72
            SGL SL  LD+  C L   A+P +I  LSSL+ L++  NNF SLPA I +LS+L +L L+
Sbjct: 864  SGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSRNNFFSLPAGISKLSKLRFLSLN 923

Query: 73   KCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAY 132
             C  LL +PEL  S+  ++A  C  L ++   PSS+                        
Sbjct: 924  HCKSLLQIPELPSSIIEVNAQYCSSLNTIL-TPSSV-------------------CNNQP 963

Query: 133  VSSSIEFWFTNSMKLDDE---ANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIV 189
            V   + F   N   LD E   +N+  +   +++I    +  L+ F     P    G  I 
Sbjct: 964  VCRWLVFTLPNCFNLDAENPCSNDMAIISPRMQIVTNMLQKLQNFL----PDF--GFSIF 1017

Query: 190  LPGSEIPEWFSNQSSGSQITLQLPQHCCQ-NLAGFALCAVLERSD--SEWAEFDVGCRYS 246
            LPGSEIP+W SNQ+ GS++T++LP H  + N  GFA+C V    D         + C+  
Sbjct: 1018 LPGSEIPDWISNQNLGSEVTIELPPHWFESNFLGFAVCCVFAFEDIAPNGCSSQLLCQLQ 1077

Query: 247  FEMKTLSGRKHVRRC--CVMASYQITKTDHVMLGFRPCGNVGF-----PDDNLHTTVSFN 299
             +     G  H+     C   S    K+ H+ L ++P G +       P+   H   SF 
Sbjct: 1078 SDESHFRGIGHILHSIDCEGNSEDRLKSHHMWLAYKPRGRLRISYGDCPNRWRHAKASFG 1137

Query: 300  FFS-NSDTAVTCCGVCAVCKSQREQ 323
            F S      V  CG+  +     E+
Sbjct: 1138 FISCCPSNMVRKCGIHLIYAQDHEE 1162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.790	0.219	0.301	6.7e-18
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.761	0.618	0.264	1.8e-13
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.684	0.196	0.295	6.3e-13
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.725	0.203	0.281	1.9e-11
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.805	0.228	0.236	1.4e-09
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.734	0.203	0.250	2.4e-09
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.707	0.190	0.296	2.5e-09
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.699	0.194	0.261	1.2e-08
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.587	0.170	0.279	4.2e-08
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.705	0.205	0.258	6.9e-08

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 6.7e-18, P = 6.7e-18
 Identities = 88/292 (30%), Positives = 128/292 (43%)

Query:    33 IPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMXXXXXXXXXXXXXX-- 90
             +P  +GC S L +L +   +   LP +I  LS L  L LS  N+                
Sbjct:   848 MPPTLGC-SRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWF 906

Query:    91 DASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIE--FWFTNSMKLD 148
             D   CK L+SLP +P +L+ +DA   E L   ++        V   I   F F+N  KL+
Sbjct:   907 DLKFCKMLKSLPVLPQNLQYLDAHECESLETLAN--PLTPLTVGERIHSMFIFSNCYKLN 964

Query:   149 DEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQI 208
              +A    +  ++++ Q MA AS + +     P  L G  I  P +EIP WF +Q  G  +
Sbjct:   965 QDAQASLVGHARIKSQLMANASAKRYYRGFVPEPLVG--ICYPATEIPSWFCHQRLGRSL 1022

Query:   209 TLQLPQHCCQ-NLAGFALCAVLERSDSEWA--EFDVGCRYSFEMKTLSGRKHV------R 259
              + LP H C  N  G AL  V+   D E +   F V C  +FE K  S  +         
Sbjct:  1023 EIPLPPHWCDINFVGLALSVVVSFKDYEDSAKRFSVKCCGNFENKDSSFTRFDFTLAGWN 1082

Query:   260 RCCVMASYQITK--TDHVMLGFRPC---GNV-GFPDDNLHTTVSFNFFSNSD 305
               C   S++  K  +DHV +G+  C    NV G  +   +T  SF F+   D
Sbjct:  1083 EPCGSLSHESRKLTSDHVFMGYNSCFLVKNVHGESNSCCYTKASFEFYVTDD 1134

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 75/284 (26%), Positives = 133/284 (46%)

Query:    40 LSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMXXXXXXXXXXXXXXDA--SNCKR 97
             +   +++ + + N    P +   LS L  L LS+ ++                   NCK 
Sbjct:    28 VQDFRDMYLTDCNLYKFPDNFSCLSSLQSLCLSRNSIENLPGSIKKLHHLKSLYLKNCKN 87

Query:    98 LQSLPEIPSSLE-EVDASV-FEKLSKH-SHYDENERAYVSSSIEFWFTNSMKLDDEANNK 154
             L SLP +PS+   +V   +  E +SK  +     E+ + +    F FT+  KL+ +A  K
Sbjct:    88 LISLPVLPSNQYLDVHGCISLETVSKPMTLLVIAEKTHST----FVFTDCYKLNRDAQEK 143

Query:   155 NLADSQLRIQHMAIASLRLFSELAEPCILKGPI--IVLPGSEIPEWFSNQSSGSQITLQL 212
              +A +QL+ Q +A  S +L  ++    ++  P+  +  PG+++P WF +Q  GS +   L
Sbjct:   144 IVAHTQLKSQILANRSFQLNHKVQSLELVLEPLSAVSFPGNDLPLWFRHQRIGSSMETNL 203

Query:   213 PQHCCQN-LAGFALCAVLERSDSE--WAEFDVGCRYSFEMKT---LSGRKHV---RRCCV 263
             P H C +   G +LC V+   D E   + F V C+  F  +    +S   ++   +  C 
Sbjct:   204 PSHWCDDKFIGLSLCTVVSFKDYEDRTSRFSVICKCKFRNEDGDYISFTCNLGGWKEQCG 263

Query:   264 MASYQITK---TDHVMLGFRPCGNVGFPDD-N--LHTTVSFNFF 301
              +S++ ++   +DHV + +  C +    DD N   +TT SF FF
Sbjct:   264 SSSHEESRRLSSDHVFISYSNCYHAKKNDDLNRCCNTTASFKFF 307

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
 Identities = 76/257 (29%), Positives = 112/257 (43%)

Query:    44 KELDICENNFESLPA---SIMQLSRLTYLYLSKCNMXXXXXXXXXXXXXX---DASNCKR 97
             K L    +  E LP     I  LS L  L LS+ NM                 D   CK 
Sbjct:   830 KLLRFNSSRVEDLPELRRGINGLSSLRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKN 889

Query:    98 LQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLA 157
             L S+P +P +LE +DA   EKL   +      +       +F FTN   L+  A N   +
Sbjct:   890 LTSIPLLPPNLEILDAHGCEKLKTVASPMALLKLMEQVQSKFIFTNCNNLEQVAKNSITS 949

Query:   158 DSQLRIQHMAIASLRLFSE--LAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQH 215
              +Q + Q   + + R + E  ++E       I   PGS++P WF+ Q+ GS + L+LP H
Sbjct:   950 YAQRKSQ---LDARRCYKEGGVSEALF----IACFPGSDVPSWFNYQTFGSALRLKLPPH 1002

Query:   216 CCQN-LAGFALCAVLERSDS--EWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQITK- 271
              C N L+  ALCAV+   D+  E   F + C  + E K   G   +R  C +    I   
Sbjct:  1003 WCDNRLSTIALCAVVTFPDTQDEINRFSIEC--TCEFKNELGTC-IRFSCTLGGSWIESR 1059

Query:   272 ---TDHVMLGFRPCGNV 285
                +DHV +G+    ++
Sbjct:  1060 KIDSDHVFIGYTSSSHI 1076

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 78/277 (28%), Positives = 120/277 (43%)

Query:    29 GLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMXXX--XXXXXXX 86
             GL  +P      S L +L +   N + LP     L  L  L LS+ N+            
Sbjct:   834 GLVVLP--FSGNSFLSDLYLTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESIEKLYS 891

Query:    87 XXXXDASNCKRLQSLPEIPSSLEEVDA---SVFEKLSKHSHYD-ENERAYVSSSIEFWFT 142
                 D  +C RL+SLP +PS+L+ +DA      E +SK        ER + +    F FT
Sbjct:   892 LLLLDLKHCCRLKSLPLLPSNLQYLDAHGCGSLENVSKPLTIPLVTERMHTT----FIFT 947

Query:   143 NSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVL--PGSEIPEWFS 200
             +  KL+       +A +QL+ Q +A  S R  +      +L  P++ +  PG +IP WFS
Sbjct:   948 DCFKLNQAEKEDIVAQAQLKSQLLARTS-RHHNHKG---LLLDPLVAVCFPGHDIPSWFS 1003

Query:   201 NQSSGSQITLQLPQHCCQN-LAGFALCAVLERSDSEWAE---FDVGCRYSFEMKT---LS 253
             +Q  GS I   L  H C +   G +LC V+   D E        V C+  F+ +    +S
Sbjct:  1004 HQKMGSLIETDLLPHWCNSKFIGASLCVVVTFKDHEGHHANRLSVRCKSKFKSQNGQFIS 1063

Query:   254 GRKHV---RRCCVMASYQITK--TDHVMLGFRPCGNV 285
                 +      C  + ++  K  +DHV + +  C NV
Sbjct:  1064 FSFCLGGWNESCGSSCHEPRKLGSDHVFISYNNC-NV 1099

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 69/292 (23%), Positives = 122/292 (41%)

Query:     1 GCRSLVTIPASIXXXXXXXXXXXXXXXCG-LTAIPQEIGCLSSLKELDICENNFESLPAS 59
             GC+ L  +P S+               C  L   P+  G +S L+ L + E   + +P  
Sbjct:   782 GCKKLKRLPDSLGQLKALEELILSG--CSKLNEFPETWGNMSRLEILLLDETAIKDMP-K 838

Query:    60 IMQLSRLTYLYLSKCNMXXXXXXXXXXXXXXDASNCKRLQSLPEIPSSLEEVDASVFEKL 119
             I+ + RL      K +                   CK L  +P++P +L+ ++      L
Sbjct:   839 ILSVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYCKNLTHVPQLPPNLQYLNVHGCSSL 898

Query:   120 SKHSH--YDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSEL 177
                +          +V+SS  F FTN  +L+  A  + +  ++ +  H+  ++L+   E 
Sbjct:   899 KTVAKPLVCSIPMKHVNSS--FIFTNCNELEQAAKEEIVVYAERKC-HLLASALKRCDES 955

Query:   178 AEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCCQN-LAGFALCAVLERSDSEW 236
               P IL       PG E+P WFS+ + GS +  +LP H   N L+G ALC V+   + + 
Sbjct:   956 CVPEILF--CTSFPGCEMPSWFSHDAIGSMVEFELPPHWNHNRLSGIALCVVVSFKNCK- 1012

Query:   237 AEFDVGCRYSFEMKTLSGRKH-----VRRCCVMASYQIT-KTDHVMLGFRPC 282
             +  ++  ++S E     G        V       + + T ++DHV +G+  C
Sbjct:  1013 SHANLIVKFSCEQNNGEGSSSSITWKVGSLIEQDNQEETVESDHVFIGYTNC 1064

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 66/263 (25%), Positives = 115/263 (43%)

Query:    36 EIGCLSSLKELDICENN-FESLPASIMQLSRLTYLYLSKCNMXXXXXXXXXXXXXXDASN 94
             EI  +SSL+ L + +N+   SLP +I QLS+L +L L  C                DA  
Sbjct:   805 EIPMISSLQCLCLSKNDHISSLPDNISQLSQLKWLDLKYCKSLTSIPKLPPNLQHLDAHG 864

Query:    95 CKRLQSLPEIPSSLEEVDASVFEK--LSKHSHYDENERAYVSSSIEFWFTNSMKLDDEAN 152
             C  L+++   P +       ++    L+  +  + + +  +SS  +      +      N
Sbjct:   865 CCSLKTVSN-PLACLTTAQQIYSTFILTNCNKLERSAKEEISSFAQRKCQLLLDAQKRCN 923

Query:   153 NKNLADSQLRIQHMAI-ASLRLFSELAEPCILKGPI--IVLPGSEIPEWFSNQSSGSQIT 209
               +L    +      I  S+ +F  ++       P+  I  PGSE+P WF +++ G  + 
Sbjct:   924 VSSLISFSICCYISKIFVSICIFLSISMQNSDSEPLFSICFPGSELPSWFCHEAVGPVLE 983

Query:   210 LQLPQHCCQN-LAGFALCAVLE--RSDSEWAEFDVGCRYSFEMKTLSGRKH---VRRCCV 263
             L++P H  +N LAG ALCAV+   +S  +   F V C +  E+K  S  +    V R   
Sbjct:   984 LRMPPHWHENRLAGVALCAVVTFPKSQEQINCFSVKCTFKLEVKEGSWIEFSFPVGRWSN 1043

Query:   264 MASYQIT-KTDHVMLGFRPCGNV 285
               +      ++HV +G+  C  +
Sbjct:  1044 QGNIVANIASEHVFIGYISCSKI 1066

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 81/273 (29%), Positives = 120/273 (43%)

Query:    38 GCLSSLKELDICENNFESLPASIMQLSRLTYLYLS--KCNMXXXXXXXXXXXXXXDASNC 95
             G  SS     +CE      P  I  LS +  L LS  +  +              D  +C
Sbjct:   850 GLTSSQSNCHLCE-----WPRGIYGLSSVRRLSLSSNEFRILPRSIGYLYHLNWLDLKHC 904

Query:    96 KRLQSLPEIPSSLEEVDAS---VFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEAN 152
             K L S+P +P +L+ +DA      E +S  S     E  ++ S+  F FTN  KL     
Sbjct:   905 KNLVSVPMLPPNLQWLDAHGCISLETISILSDPLLAETEHLHST--FIFTNCTKLYKVEE 962

Query:   153 NKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQL 212
             N   +  + +IQ M+ A  R    LA   +L G  I  PG ++P WF++++ G ++   L
Sbjct:   963 NSIESYPRKKIQLMSNALARYEKGLALD-VLIG--ICFPGWQVPGWFNHRTVGLELKQNL 1019

Query:   213 PQHC-CQNLAGFALCAVLERSD--SEWAEFDVGCRYSF--EMKTLSGRKHVRRCCVMA-- 265
             P+H     LAG ALCAV+   D  S+     V C   F  E KTL      +  C++   
Sbjct:  1020 PRHWNAGGLAGIALCAVVSFKDYISKNNRLLVTCSGEFKKEDKTL-----FQFSCILGGW 1074

Query:   266 ----SYQIT--KTDHVMLGFRPCGNVGFPDDNL 292
                 SY+    K+DHV +G+    N    DD++
Sbjct:  1075 TEHGSYEAREIKSDHVFIGYTSWLNFMKSDDSI 1107

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 68/260 (26%), Positives = 107/260 (41%)

Query:    40 LSSLKELDICENNFESLPAS---IM-QLSRLTYLYLS---KCNMXXXXXXXXXXXXXXDA 92
             L    E+DI   N   L  +   +M QL  + YL LS   K +               D 
Sbjct:   810 LKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDL 869

Query:    93 SNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEAN 152
               C  L S+PE P +L+ +DA     L   S           +   F FTN   L+  A 
Sbjct:   870 KYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAK 929

Query:   153 NKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQL 212
              +  + +Q + Q ++ A  R    L    +        PG E+P WF +++ GS++ ++L
Sbjct:   930 EEITSYAQRKCQLLSYARKRYNGGLVSESLFS---TCFPGCEVPSWFCHETVGSELEVKL 986

Query:   213 PQHCC-QNLAGFALCAVLERSD--SEWAEFDVGCRYSFEMKTLSGRKHVRRCCVMASY-- 267
               H   + LAG ALCAV+   D   + +   V C  +F++K    +  V   C + S+  
Sbjct:   987 LPHWHDKKLAGIALCAVVSCLDPQDQVSRLSVTC--TFKVKD-EDKSWVAYTCPVGSWTR 1043

Query:   268 -----QITKTDHVMLGFRPC 282
                     + DHV +G+  C
Sbjct:  1044 HGGGKDKIELDHVFIGYTSC 1063

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 62/222 (27%), Positives = 94/222 (42%)

Query:    94 NCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERA--YVSSSIE----FWFTNSMKL 147
             NC+ L+ LP +P  LE ++    E+L    +    +R   ++  S E    F FTN   L
Sbjct:   914 NCENLRYLPSLPKCLEYLNVYGCERLESVENPLVADRLTLFLDRSEELRSTFLFTNCHNL 973

Query:   148 DDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPII--VLPGSEIPEWFSNQSSG 205
               +A +     ++ +   +A+       E  E  I+ G       PG  +P WF +Q+ G
Sbjct:   974 FQDAKDSISTYAKWKCHRLAV-------ECYEQDIVSGAFFNTCYPGYIVPSWFDHQAVG 1026

Query:   206 SQITLQLPQHCCQN-LAGFALCAVL---ERSDSEWAEFDVGCRYSFEMKTLSGRKHVRRC 261
             S +  +L  H     L+G ALCAV+   E  D     F V C   FE +  S R      
Sbjct:  1027 SVLEPRLEPHWYNTMLSGIALCAVVSFHENQDPIIGSFSVKCTLQFENEDGSLRFDCDIG 1086

Query:   262 CVMASYQITKTDHVMLGFRPCGNV-GFPDDNLH--TTVSFNF 300
             C+     I + DHV +G+  C  +       +H  TTV   F
Sbjct:  1087 CLNEPGMI-EADHVFIGYVTCSRLKDHHSIPIHHPTTVKMQF 1127

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 67/259 (25%), Positives = 111/259 (42%)

Query:     2 CRSLVTIPASIXXXXXXXXXXXXXXXCG-LTAIPQEIGCLSSLKELDICENNFESLPASI 60
             C+ L TIP  +               C  L   P EI   SSLK L +   + +++P   
Sbjct:   759 CKVLETIPTCVSELKTLQKLVLSG--CSKLKEFP-EIN-KSSLKILLLDGTSIKTMP--- 811

Query:    61 MQLSRLTYLYLSKCNMXX---XXXXXXXXXXXXDASNCKRLQSLPEIPSSLEEVDASVFE 117
              QL  + YL LS+ +                  D   C +L  +PE+P +L+ +DA    
Sbjct:   812 -QLPSVQYLCLSRNDHLIYLPAGINQVSQLTRLDLKYCTKLTYVPELPPTLQYLDAHGCS 870

Query:   118 KLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSEL 177
              L   +       + V +   F FTN   L+  A  +  + +Q + Q ++ A  + ++E 
Sbjct:   871 SLKNVAKPLARIMSTVQNHYTFNFTNCGNLEQAAKEEITSYAQRKCQLLSDAR-KHYNEG 929

Query:   178 AEPCILKGPIIVLPGSEIPEWFSNQSSGSQITLQLPQHCC-QNLAGFALCAVLERSDSE- 235
             +E           PG E+P WF +++ GS +  +L  H   + L+G ALCAV+   DS+ 
Sbjct:   930 SEALFST----CFPGCEVPSWFGHEAVGSLLQRKLLPHWHDKRLSGIALCAVVSFPDSQD 985

Query:   236 -WAEFDVGCRYSFEMKTLS 253
               + F V C +  + +  S
Sbjct:   986 QLSCFSVTCTFKIKAEDKS 1004

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.14310003 annotation not avaliable (560 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	339
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-12
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 54/254 (21%)

Query: 2    CRSLVTIPASILSSGLSSLDRLDLRGCG-LTAIPQEIGCLSSLKELDICENNFESLPASI 60
            C +L T+P  I    L SL+ LDL GC  L   P +I   +++ +L++     E +P  I
Sbjct: 812  CINLETLPTGI---NLESLESLDLSGCSRLRTFP-DIS--TNISDLNLSRTGIEEVPWWI 865

Query: 61   MQLSRLTYLYLSKCNMLLSLPELSLSLKWL---DASNCKRLQSLPEIPSSLEEVDASVFE 117
             + S L++L ++ CN L  +      LK L   D S+C  L       S  E   A+   
Sbjct: 866  EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMAT--- 922

Query: 118  KLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSEL 177
                     +N  + + S++   F N   LD EA  +  +  +                 
Sbjct: 923  ---------DNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQ---------------- 957

Query: 178  AEPCILKGPIIVLPGSEIPEWFSNQSSGSQIT-LQLPQ-HCCQNLAGFALCAVL--ERSD 233
                      ++L G E+P +F+++++G+ +T + L     CQ    F  CAV+  E   
Sbjct: 958  ----------LILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFF 1007

Query: 234  SEWAEFD--VGCRY 245
                 FD  V CR+
Sbjct: 1008 IISVSFDIQVCCRF 1021

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 8e-07
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 19 SLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCN 75
          +L  LDL    LT IP      L +LK LD+  NN  S+   +   L  L  L LS  N
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 5/100 (5%)

Query: 17  LSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICE-NNFESLPASIMQLSRLTYLYLSKC 74
           L+ L  +DLRG   L  IP ++   ++L+ L + + ++   LP+SI  L++L  L +S+C
Sbjct: 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691

Query: 75  NMLLSLPE-LSL-SLKWLDASNCKRLQSLPEIPSSLEEVD 112
             L  LP  ++L SL  L+ S C RL+S P+I +++  +D
Sbjct: 692 ENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLD 731

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
            + ++P+ + +  L +L  LDL    L+ +P+ +  LS+L  LD+  N    LP  I  L
Sbjct: 151 KIESLPSPLRN--LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL 208

Query: 64  SRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEI-----PSSLEEVDAS 114
           S L  L LS  N ++ L     +LK L        +           S+LE +D S
Sbjct: 209 SALEELDLSN-NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCL-SSLKELDICENNFESLPASIMQLSRLTYLYLSKCN 75
           L++L  LDL    +T IP  IG L S+LKELD+ +N  ESLP+ +  L  L  L LS  +
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174

Query: 76  MLLSLPEL---SLSLKWLDASNCK--RLQSLPEIPSSLEEVDAS 114
            L  LP+L     +L  LD S  K   L    E+ S+LEE+D S
Sbjct: 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 21/124 (16%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCL--------------SSLKELDICE 50
           L ++P  +L  GL  L   D +   L A+P E+  L              S L+EL + +
Sbjct: 294 LTSLP--VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD 351

Query: 51  NNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEE 110
           N   SLP    +L +L     +  N L SLP L   LK L  S   RL SLP +PS L+E
Sbjct: 352 NQLASLPTLPSELYKL----WAYNNRLTSLPALPSGLKELIVSG-NRLTSLPVLPSELKE 406

Query: 111 VDAS 114
           +  S
Sbjct: 407 LMVS 410

Length = 788

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 8   IPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLT 67
           +P  I    LS+L+ LDL    +  +   +  L +L  L++  N  E LP SI  LS L 
Sbjct: 201 LPPEI--ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258

Query: 68  YLYLSKCNMLLSLPELS--LSLKWLDASNCKRLQSLPEI 104
            L LS  N + S+  L    +L+ LD S      +LP I
Sbjct: 259 TLDLS-NNQISSISSLGSLTNLRELDLSGNSLSNALPLI 296

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 29/107 (27%)

Query: 2   CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM 61
           C SLV +P+SI    L+ L+ LD+  C                       N E LP  I 
Sbjct: 667 CSSLVELPSSI--QYLNKLEDLDMSRC----------------------ENLEILPTGI- 701

Query: 62  QLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSL 108
            L  L  L LS C+ L S P++S ++ WLD        ++ E PS+L
Sbjct: 702 NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE----TAIEEFPSNL 744

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 11  SILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTY 68
           SI    + +L+ LDL    L+  IP +IG  SSLK LD+  N     +P S+  L+ L +
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 69  LYLSKCNMLLSLP-ELSL--SLKWL 90
           L L+   ++  +P EL    SLKW+
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWI 217

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 33  IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWL 90
           IP EIG L+SL  LD+  NN    +P+S+  L  L YL+L +  +   +P    SL+ L
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 19 SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA 58
          +L+ LDL    +T +P  +  L +L+ LD+  N    L  
Sbjct: 2  NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.17
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.74
PLN03150	623	hypothetical protein; Provisional	98.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.58
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.48
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.46
PLN03150	623	hypothetical protein; Provisional	98.39
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.39
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.31
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.25
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.18
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.09
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.06
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.84
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.68
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.57
PRK15386	426	type III secretion protein GogB; Provisional	97.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.14
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.1
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.03
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.87
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.77
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.63
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.75
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.38
smart00370	26	LRR Leucine-rich repeats, outliers.	94.37
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.27
smart00370	26	LRR Leucine-rich repeats, outliers.	93.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.0
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	89.8
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	88.95
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.68
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	87.09
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.02
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	84.04
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.97

>PLN03210 Resistant to P

Probab=99.94  E-value=7.2e-26  Score=242.35  Aligned_cols=275  Identities=23%  Similarity=0.328  Sum_probs=172.0

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCC-CCccCccccCC---------------------CCCcEEEeecCCCccCchh
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCG-LTAIPQEIGCL---------------------SSLKELDICENNFESLPAS   59 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~-l~~lP~~i~~l---------------------~~L~~L~Ls~n~l~~lP~~   59 (339)
                      |+.+..+|..  ++++++|+.|+|++|. +..+|..+ ++                     ++|+.|+|++|.++.+|.+
T Consensus       788 n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s  864 (1153)
T PLN03210        788 IPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW  864 (1153)
T ss_pred             CCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence            4556666766  6677777777777663 44465543 23                     3556666666677777877


Q ss_pred             hhcCccCcEEEcccCCCCccCCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCCCCCcchhhhcccc
Q 037889           60 IMQLSRLTYLYLSKCNMLLSLPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSS  136 (339)
Q Consensus        60 i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~  136 (339)
                      +..+++|+.|+|++|+.+..+|..+   .+|+.|++.+|.+|+.++...... ...     .+..+.      ....+..
T Consensus       865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~-~~~-----~~~~n~------~~~~p~~  932 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPS-EVA-----MATDNI------HSKLPST  932 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCch-hhh-----hhcccc------cccCCch
Confidence            8888888888888888888777654   456666777887776544311100 000     000000      0011123


Q ss_pred             chhhccCcCCCChHHhhhhhhhhHHHHHHHHHHhHhhhccCCCCCCCCcc-EEEecCCCcccccccCCCCceeE-EecCC
Q 037889          137 IEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGP-IIVLPGSEIPEWFSNQSSGSQIT-LQLPQ  214 (339)
Q Consensus       137 ~~l~~~nc~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~pG~~iP~Wf~~qs~g~si~-i~lp~  214 (339)
                      ..+.|.||.+|++.+....        +                   ... .+.+||.++|+||+||+.|++++ |.+|+
T Consensus       933 ~~l~f~nC~~L~~~a~l~~--------~-------------------~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~  985 (1153)
T PLN03210        933 VCINFINCFNLDQEALLQQ--------Q-------------------SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLH  985 (1153)
T ss_pred             hccccccccCCCchhhhcc--------c-------------------ccceEEECCCccCchhccCCcccceeeeeccCC
Confidence            3456899999987553110        0                   112 67899999999999999999998 99999


Q ss_pred             CCC-CCCCcceEEEEEeecCCC--CCceeeEEEEEEEEeccCCCceeeeeeecccee-ecCCceEEEEEecCCCcCCC--
Q 037889          215 HCC-QNLAGFALCAVLERSDSE--WAEFDVGCRYSFEMKTLSGRKHVRRCCVMASYQ-ITKTDHVMLGFRPCGNVGFP--  288 (339)
Q Consensus       215 ~~~-~~~~gfa~C~v~~~~~~~--~~~~~~~c~~~~~~~~~~g~~~~~~~~~~~~~~-~~~sdHl~l~~~~~~~~~~~--  288 (339)
                      .|. ..+.||++|+|++++...  ...+.+.|.|+|+  +..|...... +..+.+. ...++|+++|..... ....  
T Consensus       986 ~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 1061 (1153)
T PLN03210        986 ISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFI--DRLGNHFDSP-YQPHVFSVTKKGSHLVIFDCCFP-LNEDNA 1061 (1153)
T ss_pred             cccCCCccceEEEEEEecCccccCCCceeEEEEEEEE--CCCCCccccC-CCceeEeeeccccceEEeccccc-cccccc
Confidence            999 789999999999877632  2356788888888  6666432211 1111222 235677776644321 1111  


Q ss_pred             -C-CCCceeEEEEEe--eC-CCccEEeeecEEEEeCCcc
Q 037889          289 -D-DNLHTTVSFNFF--SN-SDTAVTCCGVCAVCKSQRE  322 (339)
Q Consensus       289 -~-~~~~~~~~~~f~--~~-~~~~vk~cGv~liy~~~~~  322 (339)
                       . +-..++++|+|.  .. ...+||+|||+++|+++..
T Consensus      1062 ~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210       1062 PLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred             chhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCc
Confidence             1 112367777773  32 3369999999999966544

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.17  E-value=1.9e-12  Score=106.69  Aligned_cols=119  Identities=21%  Similarity=0.290  Sum_probs=93.4

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCC-ccC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNML-LSL   80 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l-~~l   80 (339)
                      .|+|+.+|+.  +..+.+|+.|++.+|+|+++|.+++.|+.|+.|+++.|++..+|.+|+.++.|+.|||.+|+.. ..+
T Consensus        42 HNKl~~vppn--ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~l  119 (264)
T KOG0617|consen   42 HNKLTVVPPN--IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSL  119 (264)
T ss_pred             cCceeecCCc--HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccC
Confidence            5789999999  7999999999999999999999999999999999999999999999999999999999998765 468


Q ss_pred             CCCCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           81 PELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        81 P~~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      |..+-.++.|.+...... .+...|..++++..+++..+..+.
T Consensus       120 pgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  120 PGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             CcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc
Confidence            876644443333322221 134455666777766666655544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.96  E-value=2.4e-11  Score=100.24  Aligned_cols=79  Identities=30%  Similarity=0.476  Sum_probs=43.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCc--cCchhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFE--SLPASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~--~lP~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+|+.+|.+  ++.|+.|+.|++.-|++..+|..|+.++.|+.|||++|++.  .+|..|..|+.|+.|+|++ +-.+.+
T Consensus        66 nqie~lp~~--issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~l  142 (264)
T KOG0617|consen   66 NQIEELPTS--ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEIL  142 (264)
T ss_pred             chhhhcChh--hhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccC
Confidence            455666666  55666666666666666666666666666666666665554  3455555555555555554 333444


Q ss_pred             CCCC
Q 037889           81 PELS   84 (339)
Q Consensus        81 P~~~   84 (339)
                      |.-.
T Consensus       143 p~dv  146 (264)
T KOG0617|consen  143 PPDV  146 (264)
T ss_pred             Chhh
Confidence            4433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=4e-09  Score=73.42  Aligned_cols=58  Identities=40%  Similarity=0.622  Sum_probs=52.8

Q ss_pred             CCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCC
Q 037889           18 SSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCN   75 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~   75 (339)
                      ++|++|++++|+|+++|. .|.++++|++|++++|.++.+| ..|..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            478999999999999875 6899999999999999999987 578999999999999975

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.76  E-value=7e-09  Score=110.63  Aligned_cols=89  Identities=31%  Similarity=0.433  Sum_probs=61.0

Q ss_pred             ccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC
Q 037889            7 TIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS   84 (339)
Q Consensus         7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~   84 (339)
                      .+|..  ++++++|++|+|++|.+.+ +|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|+..+.+|..+
T Consensus       155 ~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  232 (968)
T PLN00113        155 EIPND--IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI  232 (968)
T ss_pred             cCChH--HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence            45666  6777777777777777764 6777777777777777777766 566777777777777777766666666533


Q ss_pred             ---CCCCEEecccCcC
Q 037889           85 ---LSLKWLDASNCKR   97 (339)
Q Consensus        85 ---~~L~~L~~~~~~~   97 (339)
                         .+|+.|++.+|..
T Consensus       233 ~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        233 GGLTSLNHLDLVYNNL  248 (968)
T ss_pred             hcCCCCCEEECcCcee
Confidence               4566666665543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.74  E-value=7.7e-09  Score=110.28  Aligned_cols=87  Identities=32%  Similarity=0.530  Sum_probs=67.0

Q ss_pred             CCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCEE
Q 037889           16 GLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKWL   90 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L   90 (339)
                      .+++|++|+|++|.+.. +|..++++++|++|+|++|.+. .+|..++++++|++|+|++|...+.+|..+   .+|+.|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            57788888888888875 7888888888888888888876 678888888888888888888877888644   567777


Q ss_pred             ecccCcCCCcCC
Q 037889           91 DASNCKRLQSLP  102 (339)
Q Consensus        91 ~~~~~~~l~~l~  102 (339)
                      ++.++.....++
T Consensus       218 ~L~~n~l~~~~p  229 (968)
T PLN00113        218 YLGYNNLSGEIP  229 (968)
T ss_pred             ECcCCccCCcCC
Confidence            777665433333

>PLN03150 hypothetical protein; Provisional

Probab=98.70  E-value=3e-08  Score=100.51  Aligned_cols=75  Identities=33%  Similarity=0.542  Sum_probs=44.3

Q ss_pred             ccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889            7 TIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPEL   83 (339)
Q Consensus         7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~   83 (339)
                      .+|+.  +..+++|+.|+|++|.+.+ +|..++.+++|+.|+|++|+++ .+|..++.|++|+.|+|++|+..+.+|..
T Consensus       433 ~ip~~--i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        433 FIPND--ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             cCCHH--HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence            34444  4555666666666666654 5656666666666666666655 45555666666666666666555566554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.66  E-value=2.3e-09  Score=99.19  Aligned_cols=112  Identities=37%  Similarity=0.456  Sum_probs=88.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhh-cCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM-QLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~-~l~~L~~L~L~~c~~l~~lP   81 (339)
                      |-|+++|+.  ++.|.+|..|+|..|.|..+| +|++.+.|..|+++.|.++.+|+.+. +|.+|..|||.+ +++++.|
T Consensus       193 N~L~tlP~~--lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~P  268 (565)
T KOG0472|consen  193 NLLETLPPE--LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVP  268 (565)
T ss_pred             hhhhcCChh--hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCc
Confidence            557888888  788888888899988888888 78888888888888888888888777 899999999998 6677888


Q ss_pred             CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           82 ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        82 ~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      ..+   .+|.+|+++++.    +...|.+++++ .+.+..+..++
T Consensus       269 de~clLrsL~rLDlSNN~----is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNND----ISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hHHHHhhhhhhhcccCCc----cccCCcccccc-eeeehhhcCCc
Confidence            754   567778887743    55566777777 66666555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.65  E-value=2.7e-09  Score=103.58  Aligned_cols=88  Identities=26%  Similarity=0.402  Sum_probs=70.5

Q ss_pred             CCCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCC-Ccc
Q 037889            1 GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM-LLS   79 (339)
Q Consensus         1 gCn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~-l~~   79 (339)
                      .||+|..+|+.  +-++.+|+.|+||+|.|+++--..+.+.+|++|+||+|+++.+|+.+.+|++|+.|.+.+|+. ...
T Consensus       230 S~N~Lp~vPec--ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeG  307 (1255)
T KOG0444|consen  230 SENNLPIVPEC--LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEG  307 (1255)
T ss_pred             cccCCCcchHH--HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccC
Confidence            47888888888  778888999999999888887778888888888888888888888888888888888887654 345


Q ss_pred             CCCCCCCCCEE
Q 037889           80 LPELSLSLKWL   90 (339)
Q Consensus        80 lP~~~~~L~~L   90 (339)
                      +|..+++|..|
T Consensus       308 iPSGIGKL~~L  318 (1255)
T KOG0444|consen  308 IPSGIGKLIQL  318 (1255)
T ss_pred             Cccchhhhhhh
Confidence            77766554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.64  E-value=3.9e-09  Score=102.45  Aligned_cols=71  Identities=30%  Similarity=0.326  Sum_probs=42.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCN   75 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~   75 (339)
                      |+|+..|..  +.+-+++-+|+||+|+|..||.+ +-+|+.|-+||||+|+++.+|+.+..|..|++|+|++|.
T Consensus       113 NqL~EvP~~--LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  113 NQLREVPTN--LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             hhhhhcchh--hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence            455555555  55555555666666666666554 345666666666666666666666666666666666654

>PLN03210 Resistant to P

Probab=98.58  E-value=1.8e-07  Score=101.41  Aligned_cols=101  Identities=34%  Similarity=0.543  Sum_probs=72.5

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCC-CCccCccccCCCCCcEEEeecCC-CccCchhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCG-LTAIPQEIGCLSSLKELDICENN-FESLPASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~-l~~lP~~i~~l~~L~~L~Ls~n~-l~~lP~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++|+.+|..  +..+++|+.|+|+++. ++.+|. ++.+++|+.|+|++|. +..+|.+++.+++|+.|++++|+.++.+
T Consensus       621 s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L  697 (1153)
T PLN03210        621 SKLEKLWDG--VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL  697 (1153)
T ss_pred             ccccccccc--cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence            445666666  5667777777777654 555664 6677777788877764 6678888888888888888888888888


Q ss_pred             CCC--CCCCCEEecccCcCCCcCCCCCC
Q 037889           81 PEL--SLSLKWLDASNCKRLQSLPEIPS  106 (339)
Q Consensus        81 P~~--~~~L~~L~~~~~~~l~~l~~~~~  106 (339)
                      |..  +.+|+.|++++|..++.+|..+.
T Consensus       698 p~~i~l~sL~~L~Lsgc~~L~~~p~~~~  725 (1153)
T PLN03210        698 PTGINLKSLYRLNLSGCSRLKSFPDIST  725 (1153)
T ss_pred             CCcCCCCCCCEEeCCCCCCccccccccC
Confidence            864  46788888888877766665443

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.48  E-value=8.3e-08  Score=92.77  Aligned_cols=112  Identities=22%  Similarity=0.320  Sum_probs=67.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |.|.++|... |..=.++++|+|++|.|+.+ -..|..+.+|..|.|++|+++.+| ..|.+|++|+.|+|..|. ++..
T Consensus       159 N~is~i~~~s-fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-iriv  236 (873)
T KOG4194|consen  159 NLISEIPKPS-FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIV  236 (873)
T ss_pred             chhhcccCCC-CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeee
Confidence            4555666654 44445677777777777775 345777777777777777777777 455567778877777743 2221


Q ss_pred             CCCCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           81 PELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        81 P~~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                             +.|.+.++.+++.+....+.+.+|+...|..+.++.
T Consensus       237 -------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  237 -------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             -------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence                   233444555555555555555555555555444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.46  E-value=1.5e-07  Score=60.71  Aligned_cols=40  Identities=28%  Similarity=0.556  Sum_probs=29.7

Q ss_pred             CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc
Q 037889           18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP   57 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP   57 (339)
                      ++|++|++++|+|+++|..+++|++|+.|++++|+|+.+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3677888888888888777888888888888888877665

...

>PLN03150 hypothetical protein; Provisional

Probab=98.39  E-value=4.6e-07  Score=91.95  Aligned_cols=84  Identities=29%  Similarity=0.416  Sum_probs=73.7

Q ss_pred             CccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCEEecc
Q 037889           19 SLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKWLDAS   93 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L~~~   93 (339)
                      .++.|+|++|.+.+ +|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|+..+.+|+.+   .+|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999997 8999999999999999999998 899999999999999999999999999854   678888888


Q ss_pred             cCcCCCcCC
Q 037889           94 NCKRLQSLP  102 (339)
Q Consensus        94 ~~~~l~~l~  102 (339)
                      +|.....+|
T Consensus       499 ~N~l~g~iP  507 (623)
T PLN03150        499 GNSLSGRVP  507 (623)
T ss_pred             CCcccccCC
Confidence            876444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.39  E-value=2e-08  Score=93.09  Aligned_cols=78  Identities=36%  Similarity=0.575  Sum_probs=44.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |++.++|+.  +.++.+|..|++.+|.++++|+..-+|+.|+.||...|.++.+|+.++.|.+|..|+|.+ +.+..+|+
T Consensus       147 N~i~slp~~--~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe  223 (565)
T KOG0472|consen  147 NQISSLPED--MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE  223 (565)
T ss_pred             cccccCchH--HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC
Confidence            455555555  445555555555555555555544445666666666666666666666666666666665 34455554


Q ss_pred             C
Q 037889           83 L   83 (339)
Q Consensus        83 ~   83 (339)
                      .
T Consensus       224 f  224 (565)
T KOG0472|consen  224 F  224 (565)
T ss_pred             C
Confidence            3

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.35  E-value=6.9e-07  Score=75.64  Aligned_cols=111  Identities=28%  Similarity=0.340  Sum_probs=32.6

Q ss_pred             CcccCCcCcCCCCCCccEEEeecCCCCccCcccc-CCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC-
Q 037889            5 LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIG-CLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE-   82 (339)
Q Consensus         5 L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~-~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~-   82 (339)
                      |+..|..   .+...+++|+|++|.|+.|. .++ .+.+|+.|+|++|.++.++ .+..+++|+.|++++|. +..+++ 
T Consensus         9 i~~~~~~---~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~   82 (175)
T PF14580_consen    9 IEQIAQY---NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEG   82 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHH
T ss_pred             ccccccc---cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccc
Confidence            4444443   45567888999999888874 455 5788899999999988886 57788889999998754 444542 


Q ss_pred             ---CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           83 ---LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        83 ---~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                         .+++|+.|++.++. +..+.. ...++.++.+....+..++
T Consensus        83 l~~~lp~L~~L~L~~N~-I~~l~~-l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNK-ISDLNE-LEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             HHHH-TT--EEE-TTS----SCCC-CGGGGG-TT--EEE-TT-G
T ss_pred             hHHhCCcCCEEECcCCc-CCChHH-hHHHHcCCCcceeeccCCc
Confidence               35688888887654 222322 2445556666666666565

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.35  E-value=4.2e-08  Score=99.10  Aligned_cols=94  Identities=37%  Similarity=0.510  Sum_probs=56.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCc-cCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLL-SLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~-~lP   81 (339)
                      |+|.+||+.. +.++..|+.|+||||.++.+|+.+..+..|++|...+|.+..+| .+..++.|+.+||+.|+... .+|
T Consensus       393 NrL~~fpas~-~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~  470 (1081)
T KOG0618|consen  393 NRLNSFPASK-LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLP  470 (1081)
T ss_pred             cccccCCHHH-HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhh
Confidence            4555555554 55555555555555555555555555555555555555565566 56667777777777654432 344


Q ss_pred             CC-C-CCCCEEecccCcCC
Q 037889           82 EL-S-LSLKWLDASNCKRL   98 (339)
Q Consensus        82 ~~-~-~~L~~L~~~~~~~l   98 (339)
                      +. + ++|++|+++++..+
T Consensus       471 ~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  471 EALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhCCCcccceeeccCCccc
Confidence            32 3 57788888777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.31  E-value=5.5e-07  Score=76.25  Aligned_cols=89  Identities=29%  Similarity=0.386  Sum_probs=37.2

Q ss_pred             CCCcccCCcCcCC-CCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhh-cCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSS-GLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM-QLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~-~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~-~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++|+.+..   ++ .+.+|+.|+|++|.|+.++ .+..++.|+.|++++|.++++++.+. .+++|+.|+|++|+ +..+
T Consensus        29 n~I~~Ie~---L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l  103 (175)
T PF14580_consen   29 NQISTIEN---LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDL  103 (175)
T ss_dssp             -------S-----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SC
T ss_pred             cccccccc---hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCCh
Confidence            34555543   44 5789999999999999986 48889999999999999999986664 69999999999854 4444


Q ss_pred             CCC-----CCCCCEEecccCc
Q 037889           81 PEL-----SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~-----~~~L~~L~~~~~~   96 (339)
                      -+.     +++|+.|++.+++
T Consensus       104 ~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen  104 NELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             CCCGGGGG-TT--EEE-TT-G
T ss_pred             HHhHHHHcCCCcceeeccCCc
Confidence            332     4667777777655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.29  E-value=1.5e-06  Score=89.28  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=40.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEccc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK   73 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~   73 (339)
                      ++|+++|+.  +.  .+|+.|++++|+|+.+|..   +++|++|+|++|+|+.+|..+   ++|+.|+|++
T Consensus       211 ~~LtsLP~~--l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp---~sL~~L~Ls~  271 (788)
T PRK15387        211 SGLTTLPDC--LP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLP---PGLLELSIFS  271 (788)
T ss_pred             CCCCcCCcc--hh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcc---cccceeeccC
Confidence            567888887  33  4677888888888877753   467788888888777776422   3444444444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.27  E-value=3.3e-08  Score=91.34  Aligned_cols=62  Identities=27%  Similarity=0.420  Sum_probs=29.3

Q ss_pred             ccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCC
Q 037889           20 LDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus        20 L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      -..+.|..|.|+.||+ +|+.+++|+.||||.|+|+.| |+.|..|.+|..|-+-++++++.+|
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            3344444555555433 244455555555555555444 3444445444444444444444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.25  E-value=2.1e-06  Score=88.21  Aligned_cols=94  Identities=37%  Similarity=0.483  Sum_probs=69.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+|+.+|..     +++|++|+|++|+|+.+|..   .++|+.|++++|.++.+|...   .+|+.|+|++| .+..+|.
T Consensus       232 N~Lt~LP~l-----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~  299 (788)
T PRK15387        232 NNLTSLPAL-----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN-QLTSLPV  299 (788)
T ss_pred             CcCCCCCCC-----CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCC-ccccccc
Confidence            677778764     47888999999998888864   357888888888888887533   56778888885 4567888


Q ss_pred             CCCCCCEEecccCcCCCcCCCCCCCcc
Q 037889           83 LSLSLKWLDASNCKRLQSLPEIPSSLE  109 (339)
Q Consensus        83 ~~~~L~~L~~~~~~~l~~l~~~~~~l~  109 (339)
                      .+++|+.|+++++ .+..++..|..+.
T Consensus       300 ~p~~L~~LdLS~N-~L~~Lp~lp~~L~  325 (788)
T PRK15387        300 LPPGLQELSVSDN-QLASLPALPSELC  325 (788)
T ss_pred             cccccceeECCCC-ccccCCCCccccc
Confidence            7788888888876 4455555544443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.23  E-value=9.4e-07  Score=61.31  Aligned_cols=50  Identities=38%  Similarity=0.595  Sum_probs=45.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNF   53 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l   53 (339)
                      |+|+.+|+.. |.++++|++|++++|.|+.+| ..|.++++|++|++++|+|
T Consensus        11 n~l~~i~~~~-f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   11 NKLTEIPPDS-FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             STESEECTTT-TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCCccCHHH-HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            6899999887 999999999999999999975 5799999999999999975

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.22  E-value=2.2e-06  Score=88.12  Aligned_cols=81  Identities=30%  Similarity=0.415  Sum_probs=39.4

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL   83 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~   83 (339)
                      +|+.+|..+    .++|+.|+|++|.|+.+|..+.  .+|+.|++++|+|+.+|..+.  .+|+.|+|++|+. ..+|..
T Consensus       189 ~LtsLP~~I----p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L-~~LP~~  259 (754)
T PRK15370        189 GLTTIPACI----PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI-TELPER  259 (754)
T ss_pred             CcCcCCccc----ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc-CcCChh
Confidence            455555542    2355566666666666655443  355555555555555554332  2344555554332 233332


Q ss_pred             -CCCCCEEecc
Q 037889           84 -SLSLKWLDAS   93 (339)
Q Consensus        84 -~~~L~~L~~~   93 (339)
                       +.+|+.|+++
T Consensus       260 l~s~L~~L~Ls  270 (754)
T PRK15370        260 LPSALQSLDLF  270 (754)
T ss_pred             HhCCCCEEECc
Confidence             2344444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.18  E-value=6.9e-07  Score=93.26  Aligned_cols=88  Identities=32%  Similarity=0.491  Sum_probs=71.6

Q ss_pred             cccCCcCcCCCCCCccEEEeecC-CCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC-
Q 037889            6 VTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL-   83 (339)
Q Consensus         6 ~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~-   83 (339)
                      ..++... |..|+.|++|||++| .+.++|.+|+.|-+|++|+|+++.+..+|.++++|..|.+|++..+..+..+|.. 
T Consensus       560 ~~is~~f-f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  560 LEISGEF-FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             hhcCHHH-HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchh
Confidence            3444443 677899999999977 4777999999999999999999999999999999999999999988888888764 


Q ss_pred             --CCCCCEEeccc
Q 037889           84 --SLSLKWLDASN   94 (339)
Q Consensus        84 --~~~L~~L~~~~   94 (339)
                        +.+|++|.+..
T Consensus       639 ~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  639 LELQSLRVLRLPR  651 (889)
T ss_pred             hhcccccEEEeec
Confidence              36777776654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.12  E-value=1.4e-06  Score=84.45  Aligned_cols=90  Identities=24%  Similarity=0.306  Sum_probs=56.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      |+|..+-... |.++.+|+.++|.+|.++.||.......+|+.|+|.+|.|.++- +++..++.|+.|||+.|. +..+|
T Consensus        88 Nkl~~id~~~-f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~  165 (873)
T KOG4194|consen   88 NKLSHIDFEF-FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIP  165 (873)
T ss_pred             cccccCcHHH-HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhccc
Confidence            4444443332 66777777888877777777776666666777777777777664 456667777777777743 33344


Q ss_pred             C--CC--CCCCEEeccc
Q 037889           82 E--LS--LSLKWLDASN   94 (339)
Q Consensus        82 ~--~~--~~L~~L~~~~   94 (339)
                      .  .+  .++++|++++
T Consensus       166 ~~sfp~~~ni~~L~La~  182 (873)
T KOG4194|consen  166 KPSFPAKVNIKKLNLAS  182 (873)
T ss_pred             CCCCCCCCCceEEeecc
Confidence            2  12  2455555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.12  E-value=5.1e-07  Score=87.18  Aligned_cols=99  Identities=31%  Similarity=0.442  Sum_probs=47.2

Q ss_pred             ccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCC--CCCCEEecccCcC
Q 037889           20 LDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELS--LSLKWLDASNCKR   97 (339)
Q Consensus        20 L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~--~~L~~L~~~~~~~   97 (339)
                      |+.|.+++|+++.+|..++.+..|..||.+.|.+..+|+.++.+.+|+.|.+..|+ +..+|+..  -.|..|++++++ 
T Consensus       145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfScNk-  222 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCNK-  222 (722)
T ss_pred             ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecccCc-
Confidence            33444444444444444444444444444444444444444444444444444422 22233222  235566766533 


Q ss_pred             CCcCCCCCCCccccccccccccCCCC
Q 037889           98 LQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        98 l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                         +..+|..+.+|+.++...+.+++
T Consensus       223 ---is~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  223 ---ISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             ---eeecchhhhhhhhheeeeeccCC
Confidence               23344556666666666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.09  E-value=8.3e-06  Score=83.97  Aligned_cols=91  Identities=24%  Similarity=0.424  Sum_probs=73.4

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +|+|+.+|..+    .++|+.|+|++|+|+.+|..+.  .+|+.|+|++|+++.+|..+.  .+|+.|+|++| .+..+|
T Consensus       208 ~N~LtsLP~~l----~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP  278 (754)
T PRK15370        208 NNELKSLPENL----QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLP  278 (754)
T ss_pred             CCCCCcCChhh----ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccc
Confidence            57889999883    3589999999999999998764  479999999999999998775  58999999975 556788


Q ss_pred             CC-CCCCCEEecccCcCCCcCC
Q 037889           82 EL-SLSLKWLDASNCKRLQSLP  102 (339)
Q Consensus        82 ~~-~~~L~~L~~~~~~~l~~l~  102 (339)
                      .. +.+|+.|++++| .++.+|
T Consensus       279 ~~l~~sL~~L~Ls~N-~Lt~LP  299 (754)
T PRK15370        279 ENLPEELRYLSVYDN-SIRTLP  299 (754)
T ss_pred             cccCCCCcEEECCCC-ccccCc
Confidence            74 468999999886 344444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.06  E-value=6.2e-07  Score=90.88  Aligned_cols=81  Identities=35%  Similarity=0.468  Sum_probs=72.0

Q ss_pred             CCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCC--CCCCEE
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELS--LSLKWL   90 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~--~~L~~L   90 (339)
                      +.++++|+.|+|++|+|..+|++ +.+|..|+.|+||||+++.||.++..+..|++|.... +.+..+|+..  +.|+.+
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~l  457 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVL  457 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEE
Confidence            56889999999999999999987 7899999999999999999999999999999998886 6777889753  788889


Q ss_pred             ecccC
Q 037889           91 DASNC   95 (339)
Q Consensus        91 ~~~~~   95 (339)
                      |++.+
T Consensus       458 DlS~N  462 (1081)
T KOG0618|consen  458 DLSCN  462 (1081)
T ss_pred             ecccc
Confidence            88754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.02  E-value=1.2e-06  Score=81.15  Aligned_cols=91  Identities=27%  Similarity=0.330  Sum_probs=73.3

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeec-CCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICE-NNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~-n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      |+|+.||+.+ |+.+++|+.|||++|+|+.| |+.|.+|.+|..|-+-+ |+|+.+| ..|+.|..|+.|.+.-|+..-.
T Consensus        77 N~I~~iP~~a-F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci  155 (498)
T KOG4237|consen   77 NQISSIPPGA-FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI  155 (498)
T ss_pred             CCcccCChhh-ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence            7899999998 99999999999999999996 88999999988887766 9999999 5688999999999997554333


Q ss_pred             CCCCC---CCCCEEeccc
Q 037889           80 LPELS---LSLKWLDASN   94 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~   94 (339)
                      ..+.+   .++.-|.+.+
T Consensus       156 r~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen  156 RQDALRDLPSLSLLSLYD  173 (498)
T ss_pred             hHHHHHHhhhcchhcccc
Confidence            33333   3444445554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=5.5e-06  Score=53.41  Aligned_cols=40  Identities=30%  Similarity=0.504  Sum_probs=33.2

Q ss_pred             CCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889           41 SSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus        41 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      ++|++|++++|+|+.+|+.+++|++|+.|++++|+ +..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            57999999999999999889999999999999975 44444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.94  E-value=2e-05  Score=74.88  Aligned_cols=102  Identities=26%  Similarity=0.500  Sum_probs=55.8

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecC-CCCccCccccCCCCCcEEEeecC-CCccCchhhhcC--------------ccCc
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICEN-NFESLPASIMQL--------------SRLT   67 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~~i~~l~~L~~L~Ls~n-~l~~lP~~i~~l--------------~~L~   67 (339)
                      .|+++|.-     ..+|+.|.+++| +++.+|..+.  .+|+.|++++| .+..+|.++..|              ++|+
T Consensus        63 ~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~~~L~~LPssLk  135 (426)
T PRK15386         63 DIESLPVL-----PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKGSATDSIKNVPNGLT  135 (426)
T ss_pred             CCcccCCC-----CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCCCCCcccccCcchHh
Confidence            57777732     346778888774 4555776553  57777777777 566666543211              1233


Q ss_pred             EEEcccCCCC--ccCCC-CCCCCCEEecccCcCCCcCCCCCCCccccc
Q 037889           68 YLYLSKCNML--LSLPE-LSLSLKWLDASNCKRLQSLPEIPSSLEEVD  112 (339)
Q Consensus        68 ~L~L~~c~~l--~~lP~-~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~  112 (339)
                      .|.+.+++..  ..+|. +|.+|+.|++.+|......+.+|.++..|.
T Consensus       136 ~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~  183 (426)
T PRK15386        136 SLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSIT  183 (426)
T ss_pred             heeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEE
Confidence            3333222111  11221 345777888888776543334565555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.84  E-value=7.1e-06  Score=78.70  Aligned_cols=90  Identities=33%  Similarity=0.445  Sum_probs=47.7

Q ss_pred             CCCcccCCcCcCCCCC-CccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLS-SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~-~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +.+..+|+.  ...++ +|+.|++++|.+..+|..++.+++|+.|+++.|++..+|...+.++.|+.|++++ +.+..+|
T Consensus       126 n~i~~i~~~--~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~  202 (394)
T COG4886         126 NNITDIPPL--IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLP  202 (394)
T ss_pred             cccccCccc--cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-CccccCc
Confidence            444555554  33342 5556666666665555555556666666666666665555555555566666655 3344444


Q ss_pred             CC---CCCCCEEecccC
Q 037889           82 EL---SLSLKWLDASNC   95 (339)
Q Consensus        82 ~~---~~~L~~L~~~~~   95 (339)
                      ..   +..|+.|.+.++
T Consensus       203 ~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         203 PEIELLSALEELDLSNN  219 (394)
T ss_pred             hhhhhhhhhhhhhhcCC
Confidence            42   233555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.83  E-value=1.8e-06  Score=83.47  Aligned_cols=77  Identities=30%  Similarity=0.481  Sum_probs=43.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCC----------------------CcEEEeecCCCccCchhh
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSS----------------------LKELDICENNFESLPASI   60 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~----------------------L~~L~Ls~n~l~~lP~~i   60 (339)
                      |+++.+|+.  ++.+.+|..||.+.|.|..+|..++.+.+                      |..||+|.|++..||-.|
T Consensus       153 Nkl~~lp~~--ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~f  230 (722)
T KOG0532|consen  153 NKLTSLPEE--IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDF  230 (722)
T ss_pred             CccccCCcc--cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhh
Confidence            455555555  34455555555555555555555554444                      555666666666666666


Q ss_pred             hcCccCcEEEcccCCCCccCCC
Q 037889           61 MQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus        61 ~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      .+|+.|++|-|.+ |.+++-|.
T Consensus       231 r~m~~Lq~l~Len-NPLqSPPA  251 (722)
T KOG0532|consen  231 RKMRHLQVLQLEN-NPLQSPPA  251 (722)
T ss_pred             hhhhhheeeeecc-CCCCCChH
Confidence            6666666666653 55555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.72  E-value=2.4e-05  Score=81.97  Aligned_cols=110  Identities=31%  Similarity=0.377  Sum_probs=82.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCC--CCccCcc-ccCCCCCcEEEeecCC-CccCchhhhcCccCcEEEcccCCCCc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCG--LTAIPQE-IGCLSSLKELDICENN-FESLPASIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~--l~~lP~~-i~~l~~L~~L~Ls~n~-l~~lP~~i~~l~~L~~L~L~~c~~l~   78 (339)
                      +++..++..  . ..+.|++|-+.+|.  +..++.. |..++.|+.|||++|. +..+|.+|+.|-+|++|+|++ ....
T Consensus       533 ~~~~~~~~~--~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~  608 (889)
T KOG4658|consen  533 NKIEHIAGS--S-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGIS  608 (889)
T ss_pred             cchhhccCC--C-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCcc
Confidence            455556665  2 34479999998886  6666654 7789999999999875 789999999999999999998 5566


Q ss_pred             cCCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccc
Q 037889           79 SLPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVF  116 (339)
Q Consensus        79 ~lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~  116 (339)
                      .+|..+   .+|.+|++.....+..++.....+.+|+.+..
T Consensus       609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL  649 (889)
T ss_pred             ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence            889866   45667777777777766555555555555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.71  E-value=1.7e-05  Score=76.11  Aligned_cols=86  Identities=31%  Similarity=0.417  Sum_probs=71.0

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .|+++.+|..  +..++.|+.|++++|++..+|...+.+++|+.|++++|+++.+|..+..+..|+.|.+++|. ....|
T Consensus       149 ~N~i~~l~~~--~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~  225 (394)
T COG4886         149 DNKIESLPSP--LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELL  225 (394)
T ss_pred             ccchhhhhhh--hhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecc
Confidence            4678888766  78999999999999999999999889999999999999999999988888889999999865 33344


Q ss_pred             CCCCCCCEE
Q 037889           82 ELSLSLKWL   90 (339)
Q Consensus        82 ~~~~~L~~L   90 (339)
                      .....+..+
T Consensus       226 ~~~~~~~~l  234 (394)
T COG4886         226 SSLSNLKNL  234 (394)
T ss_pred             hhhhhcccc
Confidence            433333333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.68  E-value=9.1e-06  Score=73.15  Aligned_cols=75  Identities=24%  Similarity=0.282  Sum_probs=58.0

Q ss_pred             CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC---CCCCCCEEeccc
Q 037889           18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE---LSLSLKWLDASN   94 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~---~~~~L~~L~~~~   94 (339)
                      ..|++|||++|.|+.+-++..-++.++.|++|.|++..+- ++..|++|+.|||++|. +..+-.   -+++++.|.+..
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh
Confidence            5788899999999999888888899999999999988776 48888999999999854 433333   245666665554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.59  E-value=5.7e-06  Score=66.29  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             CCCCccEEEeecCCCCccCccccCC-CCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEEeccc
Q 037889           16 GLSSLDRLDLRGCGLTAIPQEIGCL-SSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASN   94 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~lP~~i~~l-~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L~~~~   94 (339)
                      ....|+..+|++|.++.+|..+... +.++.|+|++|.+..+|..+..++.|+.|+++. +.+...|..+..|..|+...
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhc
Confidence            3456667788888888888776543 477888888888888887788888888888886 44555666543355544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.57  E-value=1.7e-05  Score=71.38  Aligned_cols=115  Identities=22%  Similarity=0.242  Sum_probs=79.0

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |.|+.+.++  ..-++.++.|+++.|.|..+-. +..|.+|+.||||+|.++++-..-.+|-+.+.|.|+. +.++.+..
T Consensus       294 N~I~~iDES--vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSG  369 (490)
T KOG1259|consen  294 NLITQIDES--VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLSG  369 (490)
T ss_pred             cchhhhhhh--hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhhh
Confidence            556666666  4556788888999888888755 8888888999999988887776666778888888887 55565554


Q ss_pred             C--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           83 L--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        83 ~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      +  +.+|.+|++.++. .+.+.. -..+++|+.+....+..++
T Consensus       370 L~KLYSLvnLDl~~N~-Ie~lde-V~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  370 LRKLYSLVNLDLSSNQ-IEELDE-VNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hHhhhhheeccccccc-hhhHHH-hcccccccHHHHHhhcCCC
Confidence            3  3567777777643 222222 2456666666666665555

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.0003  Score=67.02  Aligned_cols=87  Identities=26%  Similarity=0.490  Sum_probs=60.4

Q ss_pred             CCCccEEEeecCCCCccCccccCCCCCcEEEeecC-CCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEEecccC
Q 037889           17 LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICEN-NFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNC   95 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n-~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L~~~~~   95 (339)
                      +.+++.|++++|.|+.+|.   -..+|+.|.+++| .++.+|..+  .++|++|++++|..+..+|.   +|+.|++.+ 
T Consensus        51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~-  121 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE---SVRSLEIKG-  121 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc---ccceEEeCC-
Confidence            5778899999999998883   2357999999874 577888655  35899999999877766665   466666543 


Q ss_pred             cCCCcCCCCCCCccccc
Q 037889           96 KRLQSLPEIPSSLEEVD  112 (339)
Q Consensus        96 ~~l~~l~~~~~~l~~l~  112 (339)
                      ..+..++..|.+|..|.
T Consensus       122 n~~~~L~~LPssLk~L~  138 (426)
T PRK15386        122 SATDSIKNVPNGLTSLS  138 (426)
T ss_pred             CCCcccccCcchHhhee
Confidence            33334555555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.14  E-value=0.0002  Score=69.27  Aligned_cols=81  Identities=33%  Similarity=0.384  Sum_probs=63.0

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC--CCCCCEEe
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL--SLSLKWLD   91 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~--~~~L~~L~   91 (339)
                      +..+++|+.|++.+|.|+.+...+..+.+|+.|+|++|.|+.+. .+..++.|+.|++++ +.+..++..  +.+|+.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDISGLESLKSLKLLD  168 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc-CcchhccCCccchhhhccc
Confidence            56678889999999999888777888899999999999988886 577778899999998 445555554  45666666


Q ss_pred             cccCc
Q 037889           92 ASNCK   96 (339)
Q Consensus        92 ~~~~~   96 (339)
                      ++++.
T Consensus       169 l~~n~  173 (414)
T KOG0531|consen  169 LSYNR  173 (414)
T ss_pred             CCcch
Confidence            66654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.10  E-value=0.0003  Score=65.01  Aligned_cols=79  Identities=28%  Similarity=0.307  Sum_probs=57.9

Q ss_pred             CCccEEEeecCCCCc-----cCccccCC-CCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccCCCCc----cCCC
Q 037889           18 SSLDRLDLRGCGLTA-----IPQEIGCL-SSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKCNMLL----SLPE   82 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~-----lP~~i~~l-~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c~~l~----~lP~   82 (339)
                      ++|++|++++|++..     +...+..+ ++|+.|+|++|.++     .++..+..+.+|+.|++++|....    .++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            349999999998873     34556677 88999999999887     345567777889999999877652    2332


Q ss_pred             CC---CCCCEEecccCc
Q 037889           83 LS---LSLKWLDASNCK   96 (339)
Q Consensus        83 ~~---~~L~~L~~~~~~   96 (339)
                      .+   .+|+.|++++|.
T Consensus       188 ~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         188 GLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HHHhCCCCCEEeccCCc
Confidence            22   478888888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.03  E-value=0.00014  Score=67.21  Aligned_cols=88  Identities=23%  Similarity=0.215  Sum_probs=65.6

Q ss_pred             ccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCC---CcEEEeecCCCc-----cCchhhhcC-ccCcEEEcccCCC
Q 037889            7 TIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSS---LKELDICENNFE-----SLPASIMQL-SRLTYLYLSKCNM   76 (339)
Q Consensus         7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~---L~~L~Ls~n~l~-----~lP~~i~~l-~~L~~L~L~~c~~   76 (339)
                      .++..  +..+++|+.|++++|.+.. .+..+..+.+   |+.|++++|.+.     .+...+..+ ++|+.|++++|..
T Consensus        72 ~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  149 (319)
T cd00116          72 SLLQG--LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL  149 (319)
T ss_pred             HHHHH--HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence            34444  6678899999999999985 5555555555   999999999987     244567777 8999999999886


Q ss_pred             Ccc----CCCCC---CCCCEEecccCc
Q 037889           77 LLS----LPELS---LSLKWLDASNCK   96 (339)
Q Consensus        77 l~~----lP~~~---~~L~~L~~~~~~   96 (339)
                      ...    ++..+   .+|+.|++.+|.
T Consensus       150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         150 EGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             CchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            632    22222   479999998865

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.03  E-value=7.1e-05  Score=60.12  Aligned_cols=77  Identities=25%  Similarity=0.362  Sum_probs=53.5

Q ss_pred             CccEEEeecCCCCccCcc---ccCCCCCcEEEeecCCCccCchhhhc-CccCcEEEcccCCCCccCCCC---CCCCCEEe
Q 037889           19 SLDRLDLRGCGLTAIPQE---IGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLPEL---SLSLKWLD   91 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~lP~~---i~~l~~L~~L~Ls~n~l~~lP~~i~~-l~~L~~L~L~~c~~l~~lP~~---~~~L~~L~   91 (339)
                      .+..|+|+.|+|-.+++.   +.....|...+|++|.|...|+.+.. .+.++.|+|++ +.+..+|+.   ++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence            455678888887766654   44445566678888888888877764 45788888886 566677763   36677777


Q ss_pred             cccCc
Q 037889           92 ASNCK   96 (339)
Q Consensus        92 ~~~~~   96 (339)
                      +..++
T Consensus       107 l~~N~  111 (177)
T KOG4579|consen  107 LRFNP  111 (177)
T ss_pred             cccCc
Confidence            77654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.87  E-value=0.00026  Score=68.51  Aligned_cols=90  Identities=26%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .|+|+.+...  +..+.+|++|+|++|.|+.+.. +..++.|+.|++++|.++.++ .+..++.|+.+++++|.....=+
T Consensus       104 ~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  104 DNKIEKIENL--LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             ccchhhcccc--hhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhh
Confidence            3567777664  5679999999999999999744 667778999999999999887 56669999999999976655444


Q ss_pred             ---CCCCCCCEEecccC
Q 037889           82 ---ELSLSLKWLDASNC   95 (339)
Q Consensus        82 ---~~~~~L~~L~~~~~   95 (339)
                         ....+++.+.+.++
T Consensus       180 ~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  180 DELSELISLEELDLGGN  196 (414)
T ss_pred             hhhhhccchHHHhccCC
Confidence               33345555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.79  E-value=0.00042  Score=37.45  Aligned_cols=19  Identities=42%  Similarity=0.672  Sum_probs=10.1

Q ss_pred             CcEEEeecCCCccCchhhh
Q 037889           43 LKELDICENNFESLPASIM   61 (339)
Q Consensus        43 L~~L~Ls~n~l~~lP~~i~   61 (339)
                      |++|||++|+|+.+|++|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.64  E-value=9.4e-05  Score=73.83  Aligned_cols=61  Identities=25%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             ccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889           20 LDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus        20 L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |.+.+.++|++.-+-.++.-++.|+.|+|++|+++..- .+..+++|++|||++ |.++.+|.
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~  226 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQ  226 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccc
Confidence            33444455555544445555555555555555555443 444555555555555 34444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.57  E-value=0.00066  Score=36.68  Aligned_cols=22  Identities=45%  Similarity=0.708  Sum_probs=18.9

Q ss_pred             CccEEEeecCCCCccCccccCC
Q 037889           19 SLDRLDLRGCGLTAIPQEIGCL   40 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~lP~~i~~l   40 (339)
                      +|++|+|++|+|+.+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999987754

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.38  E-value=0.00017  Score=72.03  Aligned_cols=117  Identities=25%  Similarity=0.226  Sum_probs=82.7

Q ss_pred             CCCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCcc
Q 037889            1 GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         1 gCn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      .||.|+.+..+  +.-++.|+.|||+.|.+...- .+..++.|++|||++|.++.+|. +...+. |+.|.+++ |.+++
T Consensus       172 syN~L~~mD~S--Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~t  246 (1096)
T KOG1859|consen  172 SYNRLVLMDES--LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTT  246 (1096)
T ss_pred             chhhHHhHHHH--HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHh
Confidence            37888888777  677889999999999999875 78899999999999999999994 233344 99999997 55665


Q ss_pred             CCC--CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCCC
Q 037889           80 LPE--LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSH  124 (339)
Q Consensus        80 lP~--~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~~  124 (339)
                      +-.  .+.+|+.|+++++-..+...  ...+..|..+....+..++.
T Consensus       247 L~gie~LksL~~LDlsyNll~~hse--L~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  247 LRGIENLKSLYGLDLSYNLLSEHSE--LEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhHHhhhhhhccchhHhhhhcchh--hhHHHHHHHHHHHhhcCCcc
Confidence            553  34677777777643222111  12233445555566666664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.19  E-value=0.008  Score=51.56  Aligned_cols=76  Identities=21%  Similarity=0.323  Sum_probs=52.1

Q ss_pred             CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhc-CccCcEEEcccCCCCccCCCC-----CCCCCEEe
Q 037889           18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLPEL-----SLSLKWLD   91 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~-l~~L~~L~L~~c~~l~~lP~~-----~~~L~~L~   91 (339)
                      .+...+||++|.|..++. +..++.|.+|.|++|+|+.|-+.+.. +++|+.|.|.+|+ ++.+-++     .++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence            356678888888877644 67788888888888888888666664 5678888888743 3333321     24566666


Q ss_pred             cccC
Q 037889           92 ASNC   95 (339)
Q Consensus        92 ~~~~   95 (339)
                      +.++
T Consensus       120 ll~N  123 (233)
T KOG1644|consen  120 LLGN  123 (233)
T ss_pred             ecCC
Confidence            5554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.15  E-value=0.0034  Score=55.71  Aligned_cols=81  Identities=28%  Similarity=0.350  Sum_probs=47.4

Q ss_pred             CCCccEEEeecCCCCccCccccCCCCCcEEEeecCC--Cc-cCchhhhcCccCcEEEcccCCCC--ccCCCC--CCCCCE
Q 037889           17 LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENN--FE-SLPASIMQLSRLTYLYLSKCNML--LSLPEL--SLSLKW   89 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~--l~-~lP~~i~~l~~L~~L~L~~c~~l--~~lP~~--~~~L~~   89 (339)
                      +..|+.|.+.+..++.+ ..+..|++|+.|.+|.|.  +. .++.....+++|++|+|++|+..  .+++..  ..+|..
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            44556666666655543 224456788888888883  33 44444555688888888875542  233322  245666


Q ss_pred             EecccCcCC
Q 037889           90 LDASNCKRL   98 (339)
Q Consensus        90 L~~~~~~~l   98 (339)
                      |++.+|...
T Consensus       121 Ldl~n~~~~  129 (260)
T KOG2739|consen  121 LDLFNCSVT  129 (260)
T ss_pred             hhcccCCcc
Confidence            666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.14  E-value=0.0044  Score=63.61  Aligned_cols=80  Identities=24%  Similarity=0.358  Sum_probs=54.9

Q ss_pred             CCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc--hhhhcCccCcEEEcccCCCCccC---------CCC
Q 037889           15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP--ASIMQLSRLTYLYLSKCNMLLSL---------PEL   83 (339)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~L~~c~~l~~l---------P~~   83 (339)
                      .++++|+.||+|+++++.+ ..+++|++|+.|.+.+=.|+.-.  ..+.+|++|+.||+|.-+....-         +..
T Consensus       170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            4677888888888888877 66788888888887776666443  35678888888988864332221         123


Q ss_pred             CCCCCEEecccC
Q 037889           84 SLSLKWLDASNC   95 (339)
Q Consensus        84 ~~~L~~L~~~~~   95 (339)
                      ++.|+.|+.++.
T Consensus       249 LpeLrfLDcSgT  260 (699)
T KOG3665|consen  249 LPELRFLDCSGT  260 (699)
T ss_pred             CccccEEecCCc
Confidence            456777776654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.77  E-value=0.015  Score=49.97  Aligned_cols=53  Identities=26%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             CCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC---CCCCCEEeccc
Q 037889           41 SSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL---SLSLKWLDASN   94 (339)
Q Consensus        41 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~---~~~L~~L~~~~   94 (339)
                      .+...+||+.|.+..++ .+..+++|.+|.|++|.....-|.+   .++|..|.+.+
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            34566667777666555 4556666777777665554444432   24556665555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.63  E-value=0.0065  Score=30.53  Aligned_cols=14  Identities=43%  Similarity=0.745  Sum_probs=4.9

Q ss_pred             CcEEEeecCCCccC
Q 037889           43 LKELDICENNFESL   56 (339)
Q Consensus        43 L~~L~Ls~n~l~~l   56 (339)
                      |+.|+|++|+|+++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.28  E-value=0.011  Score=29.75  Aligned_cols=17  Identities=41%  Similarity=0.645  Sum_probs=11.7

Q ss_pred             CCccEEEeecCCCCccC
Q 037889           18 SSLDRLDLRGCGLTAIP   34 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~lP   34 (339)
                      ++|+.|+|++|+|+++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999999887

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.75  E-value=0.023  Score=50.53  Aligned_cols=60  Identities=23%  Similarity=0.385  Sum_probs=26.4

Q ss_pred             CCCccEEEeecC--CCCc-cCccccCCCCCcEEEeecCCCccCc--hhhhcCccCcEEEcccCCC
Q 037889           17 LSSLDRLDLRGC--GLTA-IPQEIGCLSSLKELDICENNFESLP--ASIMQLSRLTYLYLSKCNM   76 (339)
Q Consensus        17 l~~L~~L~Ls~n--~l~~-lP~~i~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~L~~c~~   76 (339)
                      |++|+.|.++.|  ++.. ++.....+++|++|+|++|+++.+-  .....+.+|..|++.+|..
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence            445555555555  3332 3333333455555555555544210  0133344445555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.73  E-value=0.013  Score=55.59  Aligned_cols=58  Identities=28%  Similarity=0.520  Sum_probs=27.7

Q ss_pred             CCCccEEEeecCCCCccC--ccccCCCCCcEEEeecCCCccC--chh-----hhcCccCcEEEcccC
Q 037889           17 LSSLDRLDLRGCGLTAIP--QEIGCLSSLKELDICENNFESL--PAS-----IMQLSRLTYLYLSKC   74 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~Ls~n~l~~l--P~~-----i~~l~~L~~L~L~~c   74 (339)
                      +..|+.|||++|++...+  ...+.++.|..|+++.|++.++  |+.     ...+++|++|+++.|
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence            344555555555555444  3344555555555555555432  322     123445555555553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.60  E-value=0.022  Score=58.52  Aligned_cols=81  Identities=27%  Similarity=0.293  Sum_probs=58.3

Q ss_pred             CCCCccEEEeecCCCCc--cCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC-----CCCCCC
Q 037889           16 GLSSLDRLDLRGCGLTA--IPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE-----LSLSLK   88 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~-----~~~~L~   88 (339)
                      -|++|+.|.+++-.+..  +-.-..++++|..||+|+++++.+ .+|++|++|+.|.+.+ -....-+.     .+.+|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCC
Confidence            46788888887766543  334456789999999999999988 6899999999998875 33333232     237888


Q ss_pred             EEecccCcCC
Q 037889           89 WLDASNCKRL   98 (339)
Q Consensus        89 ~L~~~~~~~l   98 (339)
                      .||++.-...
T Consensus       224 vLDIS~~~~~  233 (699)
T KOG3665|consen  224 VLDISRDKNN  233 (699)
T ss_pred             eeeccccccc
Confidence            8888765433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.38  E-value=0.15  Score=40.22  Aligned_cols=81  Identities=19%  Similarity=0.240  Sum_probs=45.7

Q ss_pred             ccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCCCC-
Q 037889            7 TIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLPEL-   83 (339)
Q Consensus         7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP~~-   83 (339)
                      ++++.+ |.+.++|+.+.+.. .++.++. .+.+.++|+.+.+..+ +..++. .+..+.+|+.+.+.+  ....++.. 
T Consensus         2 ~i~~~~-F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~   76 (129)
T PF13306_consen    2 SIGNNA-FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNA   76 (129)
T ss_dssp             EE-TTT-TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTT
T ss_pred             EECHHH-HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccc
Confidence            567776 88888899998874 5777754 4777878999998775 777773 566777889988864  34444432 


Q ss_pred             ---CCCCCEEec
Q 037889           84 ---SLSLKWLDA   92 (339)
Q Consensus        84 ---~~~L~~L~~   92 (339)
                         ..+|+.+.+
T Consensus        77 F~~~~~l~~i~~   88 (129)
T PF13306_consen   77 FSNCTNLKNIDI   88 (129)
T ss_dssp             TTT-TTECEEEE
T ss_pred             cccccccccccc
Confidence               134555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.37  E-value=0.034  Score=31.02  Aligned_cols=20  Identities=45%  Similarity=0.821  Sum_probs=12.3

Q ss_pred             CCCCcEEEeecCCCccCchh
Q 037889           40 LSSLKELDICENNFESLPAS   59 (339)
Q Consensus        40 l~~L~~L~Ls~n~l~~lP~~   59 (339)
                      |++|+.|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            34566666666666666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.37  E-value=0.034  Score=31.02  Aligned_cols=20  Identities=45%  Similarity=0.821  Sum_probs=12.3

Q ss_pred             CCCCcEEEeecCCCccCchh
Q 037889           40 LSSLKELDICENNFESLPAS   59 (339)
Q Consensus        40 l~~L~~L~Ls~n~l~~lP~~   59 (339)
                      |++|+.|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            34566666666666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.35  E-value=0.0054  Score=55.12  Aligned_cols=54  Identities=31%  Similarity=0.527  Sum_probs=24.8

Q ss_pred             CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEccc
Q 037889           18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK   73 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~   73 (339)
                      .+.+.|++-||.|..| ..+..|+.|+.|.||-|+|+++- .+..+++|+.|+|..
T Consensus        19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk   72 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK   72 (388)
T ss_pred             HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh
Confidence            3444455555554443 11334445555555555554443 244444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.00  E-value=0.02  Score=54.44  Aligned_cols=81  Identities=23%  Similarity=0.256  Sum_probs=42.1

Q ss_pred             CCCCccEEEeecCCCCccCc--cccCCCCCcEEEeecCCCccC---chhhhcCccCcEEEcccCCCCccCCC----CCCC
Q 037889           16 GLSSLDRLDLRGCGLTAIPQ--EIGCLSSLKELDICENNFESL---PASIMQLSRLTYLYLSKCNMLLSLPE----LSLS   86 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~lP~--~i~~l~~L~~L~Ls~n~l~~l---P~~i~~l~~L~~L~L~~c~~l~~lP~----~~~~   86 (339)
                      ++++|+...|.++.+...+.  ....+++++.||||+|-|...   -.-...|++|+.|+|+.|+..-..-.    .+..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            44566666666666555442  455566666666666655532   12234566666666665443322211    2344


Q ss_pred             CCEEecccCc
Q 037889           87 LKWLDASNCK   96 (339)
Q Consensus        87 L~~L~~~~~~   96 (339)
                      |+.|.++.|.
T Consensus       199 lK~L~l~~CG  208 (505)
T KOG3207|consen  199 LKQLVLNSCG  208 (505)
T ss_pred             hheEEeccCC
Confidence            5555555553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.27  E-value=0.059  Score=30.03  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=18.5

Q ss_pred             CCCccEEEeecCCCCccCccc
Q 037889           17 LSSLDRLDLRGCGLTAIPQEI   37 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~lP~~i   37 (339)
                      |++|++|+|++|+|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            568999999999999998764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.27  E-value=0.059  Score=30.03  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=18.5

Q ss_pred             CCCccEEEeecCCCCccCccc
Q 037889           17 LSSLDRLDLRGCGLTAIPQEI   37 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~lP~~i   37 (339)
                      |++|++|+|++|+|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            568999999999999998764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.93  E-value=0.015  Score=52.77  Aligned_cols=57  Identities=26%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             hhcCccCcEEEcccCCCCccC--CC--CCCCCCEEecccCcCCCcCCCCCCCccccccccccc
Q 037889           60 IMQLSRLTYLYLSKCNMLLSL--PE--LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEK  118 (339)
Q Consensus        60 i~~l~~L~~L~L~~c~~l~~l--P~--~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~  118 (339)
                      ...+++|..|||++|..+..-  -+  -+..|++|.++.|-.+  .|...-.+...+.+.+.+
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLD  369 (419)
T ss_pred             HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEE
Confidence            346788888888888776640  00  1356788888887643  222223334444444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.00  E-value=0.0033  Score=55.03  Aligned_cols=76  Identities=20%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEE
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWL   90 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L   90 (339)
                      +...+..+.||++.|++..+-..++.++.|..|+++.|.+..+|..++.+..+..+++.. +.+..+|.+...+..+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCc
Confidence            455677788888888887777777888888888888888888888888888888887765 5566677766544443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.24  E-value=0.18  Score=45.99  Aligned_cols=54  Identities=30%  Similarity=0.465  Sum_probs=33.8

Q ss_pred             CCCccEEEeecCCCCc---cCccccCCCCCcEEEeecCCCc----cCchhhhcCccCcEEEccc
Q 037889           17 LSSLDRLDLRGCGLTA---IPQEIGCLSSLKELDICENNFE----SLPASIMQLSRLTYLYLSK   73 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~Ls~n~l~----~lP~~i~~l~~L~~L~L~~   73 (339)
                      .+.++.|||.+|.|+.   +-..+.+|+.|+.|+|+.|.+.    ++|   -.+.+|+.|-|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg  130 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG  130 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC
Confidence            3456777777777765   3344567777777777777654    333   2345666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=89.80  E-value=0.19  Score=46.68  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=47.2

Q ss_pred             CCCCccEEEeecCCCCccC-----ccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccCCCCc-------
Q 037889           16 GLSSLDRLDLRGCGLTAIP-----QEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKCNMLL-------   78 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~lP-----~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c~~l~-------   78 (339)
                      +-..|+++....|++..-+     ..+...+.|+.+.++.|.|.     -+-..+..+++|+.|||.+|....       
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            3456777777777765432     33555567777777777654     123456667777777777765432       


Q ss_pred             -cCCCCCCCCCEEecccCc
Q 037889           79 -SLPELSLSLKWLDASNCK   96 (339)
Q Consensus        79 -~lP~~~~~L~~L~~~~~~   96 (339)
                       .+|.+ +.|+.|++++|.
T Consensus       235 kaL~s~-~~L~El~l~dcl  252 (382)
T KOG1909|consen  235 KALSSW-PHLRELNLGDCL  252 (382)
T ss_pred             HHhccc-chheeecccccc
Confidence             23332 256666666663

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.05  E-value=0.013  Score=51.48  Aligned_cols=62  Identities=21%  Similarity=0.124  Sum_probs=36.7

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCC
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCN   75 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~   75 (339)
                      |+.++.|..|+++.|++..+|..++.+..++.+++..|..+..|.+++.+++++++++.++.
T Consensus        61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            33444555566666666666666666666666666666666666666666666666655543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.95  E-value=0.022  Score=51.27  Aligned_cols=68  Identities=22%  Similarity=0.247  Sum_probs=56.6

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc--hhhhcCccCcEEEcccCCCCccCCC
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP--ASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      ...|+.|++|.|+-|.|+.+- .+..+++|+.|+|..|.|..+-  .-+.++++|+.|+|..|.--+.=+.
T Consensus        37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence            357899999999999999873 3778899999999999998775  3567899999999998876665543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.68  E-value=0.92  Score=35.53  Aligned_cols=74  Identities=16%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .++.+++.+ |.+.++|+.+.+.++ +..++. .+.+..+|+.+.+.. .+..++. .+..+++|+.+++..+  +..++
T Consensus        22 ~~~~I~~~~-F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~   96 (129)
T PF13306_consen   22 TIKKIGENA-FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIG   96 (129)
T ss_dssp             T--EE-TTT-TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEH
T ss_pred             CeeEeChhh-ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEc
Confidence            456677776 888889999999875 888765 477777999999975 6777764 4667999999999752  44444


Q ss_pred             C
Q 037889           82 E   82 (339)
Q Consensus        82 ~   82 (339)
                      .
T Consensus        97 ~   97 (129)
T PF13306_consen   97 S   97 (129)
T ss_dssp             T
T ss_pred             h
Confidence            3

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=87.09  E-value=0.19  Score=46.67  Aligned_cols=83  Identities=22%  Similarity=0.329  Sum_probs=60.8

Q ss_pred             CCCCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCCCCcc----
Q 037889           14 SSGLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCNMLLS----   79 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~~l~~----   79 (339)
                      |...+.|+.+.++.|.|..     +-..+..+++|+.|||..|.|+.     +-..+..+++|+.|++++|.....    
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            4455788999999998764     34567888999999999999873     345567788999999999875432    


Q ss_pred             ----CCCCCCCCCEEecccCc
Q 037889           80 ----LPELSLSLKWLDASNCK   96 (339)
Q Consensus        80 ----lP~~~~~L~~L~~~~~~   96 (339)
                          +-...++|+.|.+.+|.
T Consensus       261 ~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHHhccCCCCceeccCcch
Confidence                22344677888777764

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.02  E-value=0.43  Score=26.75  Aligned_cols=17  Identities=53%  Similarity=0.853  Sum_probs=11.0

Q ss_pred             CCcEEEeecCCCccCch
Q 037889           42 SLKELDICENNFESLPA   58 (339)
Q Consensus        42 ~L~~L~Ls~n~l~~lP~   58 (339)
                      +|+.|+.++|+++++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            46666666666666664

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.78  E-value=0.46  Score=26.61  Aligned_cols=18  Identities=33%  Similarity=0.604  Sum_probs=16.3

Q ss_pred             CCccEEEeecCCCCccCc
Q 037889           18 SSLDRLDLRGCGLTAIPQ   35 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~lP~   35 (339)
                      .+|++|+.++|+|+++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468999999999999997

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.98  E-value=0.051  Score=49.51  Aligned_cols=79  Identities=25%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CccEEEeecCCCCc--cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCC-----CCCCCCEE
Q 037889           19 SLDRLDLRGCGLTA--IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPE-----LSLSLKWL   90 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~-----~~~~L~~L   90 (339)
                      .|++|||++..|+.  +-..+..+..|+.|.|.|+.+. .+-..|.+=.+|+.|+|+.|+-....-.     ...+|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47778887777654  4444556666777777777666 3445566666677777776655443321     22455555


Q ss_pred             ecccCcC
Q 037889           91 DASNCKR   97 (339)
Q Consensus        91 ~~~~~~~   97 (339)
                      +++.|..
T Consensus       266 NlsWc~l  272 (419)
T KOG2120|consen  266 NLSWCFL  272 (419)
T ss_pred             CchHhhc
Confidence            6665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.04  E-value=0.4  Score=43.85  Aligned_cols=76  Identities=30%  Similarity=0.310  Sum_probs=51.0

Q ss_pred             CccEEEeecCCCCccCc--ccc-CCCCCcEEEeecCCCcc---CchhhhcCccCcEEEcccCCCCc---cCCCCCCCCCE
Q 037889           19 SLDRLDLRGCGLTAIPQ--EIG-CLSSLKELDICENNFES---LPASIMQLSRLTYLYLSKCNMLL---SLPELSLSLKW   89 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~lP~--~i~-~l~~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~L~~c~~l~---~lP~~~~~L~~   89 (339)
                      .+..|-+.++.|...-+  .|+ ..+.++.|||.+|.|+.   +-.-..+|+.|++|+|+.|....   .+|.-..+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            34456666776655332  232 45789999999999884   44456789999999999876544   44422257777


Q ss_pred             Eeccc
Q 037889           90 LDASN   94 (339)
Q Consensus        90 L~~~~   94 (339)
                      |-+.+
T Consensus       126 lVLNg  130 (418)
T KOG2982|consen  126 LVLNG  130 (418)
T ss_pred             EEEcC
Confidence            76665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.97  E-value=0.99  Score=25.31  Aligned_cols=17  Identities=35%  Similarity=0.749  Sum_probs=10.6

Q ss_pred             CCCCcEEEeecCCCccC
Q 037889           40 LSSLKELDICENNFESL   56 (339)
Q Consensus        40 l~~L~~L~Ls~n~l~~l   56 (339)
                      +++|+.|+|+.|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            35667777777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	339
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 1e-24
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 12/114 (10%)

Query: 1   GCRSLVTIPASI-------LSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNF 53
            C  L  +P  +          GL +L  L L   G+ ++P  I  L +LK L I  +  
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218

Query: 54  ESLPASIMQLSRLTYLYLSKCNMLLSLPE----LSLSLKWLDASNCKRLQSLPE 103
            +L  +I  L +L  L L  C  L + P      +  LK L   +C  L +LP 
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.9 bits (242), Expect = 4e-23
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 15/112 (13%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
            L   P       LS L  + +   GL  +P  +   + L+ L +  N   +LPASI  L
Sbjct: 92  PLPQFPDQA--FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL 149

Query: 64  SRLTYLYLSKCNMLLSLPE----LSL--------SLKWLDASNCKRLQSLPE 103
           +RL  L +  C  L  LPE               +L+ L       ++SLP 
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPA 200

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.6 bits (241), Expect = 5e-23
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASI 60
             R+L      +  +       L+LR   L   P +   LS L+ + I       LP ++
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM 123

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
            Q + L  L L+  N L +LP  S+     L+ L    C  L  LPE
Sbjct: 124 QQFAGLETLTLA-RNPLRALPA-SIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICE-NNFESLPASIM 61
            L  +  +I    L  L+ LDLRGC  L   P   G  + LK L + + +N  +LP  I 
Sbjct: 217 PLSALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 62  QLSRLTYLYLSKCNMLLSLPE----LSLSLKWLDASNCKRLQSLPEIPSSL 108
           +L++L  L L  C  L  LP     L  +   +      + Q     P + 
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 36/135 (26%), Positives = 50/135 (37%), Gaps = 22/135 (16%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENN-FESLPASI-- 60
            L+ +P ++     + L+ L L    L A+P  I  L+ L+EL I        LP  +  
Sbjct: 115 GLMELPDTM--QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 61  -------MQLSRLTYLYLSKCNMLLSLPE----LSLSLKWLDASNCKRLQSLP-EIP--S 106
                    L  L  L L     + SLP     L  +LK L   N   L +L   I    
Sbjct: 173 TDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQ-NLKSLKIRNSP-LSALGPAIHHLP 229

Query: 107 SLEEVDASVFEKLSK 121
            LEE+D      L  
Sbjct: 230 KLEELDLRGCTALRN 244

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 11/93 (11%), Positives = 21/93 (22%), Gaps = 11/93 (11%)

Query: 17  LSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCN 75
            S  + L  +G   L      +         D    N           +    +      
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNAD---RNRWHSAWRQANSNNPQ-IETRTGR 66

Query: 76  MLLSLPEL-----SLSLKWLDASNCKRLQSLPE 103
            L +  +L           L+  +   L   P+
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVP-LPQFPD 98

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICENNFESLP 57
            C +L+T+P  I    L+ L++LDLRGC  L+ +P  I  L +   + +  +    L 
Sbjct: 262 DCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 5/80 (6%), Positives = 20/80 (25%), Gaps = 3/80 (3%)

Query: 30  LTAIPQEIGCLSSLKELDICE-NNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLK 88
           + +        S  + L              + Q  R      ++ +          +  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN--SNNP 58

Query: 89  WLDASNCKRLQSLPEIPSSL 108
            ++    + L++  ++    
Sbjct: 59  QIETRTGRALKATADLLEDA 78

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.2 bits (213), Expect = 8e-19
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
            V++    L   ++    L L    L+++P  +     +  L+I +N   SLP      +
Sbjct: 49  AVSLLKECL---INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELP---A 100

Query: 65  RLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
            L YL     N L +LPEL  SLK LD  N  +L  LPE+P+ LE ++A 
Sbjct: 101 SLEYLDAC-DNRLSTLPELPASLKHLDVDNN-QLTMLPELPALLEYINAD 148

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.9 bits (207), Expect = 6e-18
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 12/111 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
           +L ++P ++       +  L++    L ++P+      SL+ LD C+N   +LP      
Sbjct: 70  NLSSLPDNLPPQ----ITVLEITQNALISLPELPA---SLEYLDACDNRLSTLPELP--- 119

Query: 64  SRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
           + L +L +   N L  LPEL   L++++A N  +L  LPE+P+SLE +   
Sbjct: 120 ASLKHLDVDN-NQLTMLPELPALLEYINADNN-QLTMLPELPTSLEVLSVR 168

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.7 bits (204), Expect = 1e-17
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
           +L+++P        +SL+ LD     L+ +P+      SLK LD+  N    LP      
Sbjct: 91  ALISLPELP-----ASLEYLDACDNRLSTLPELPA---SLKHLDVDNNQLTMLPELP--- 139

Query: 64  SRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
           + L Y+     N L  LPEL  SL+ L   N  +L  LPE+P SLE +D S
Sbjct: 140 ALLEYINADN-NQLTMLPELPTSLEVLSVRNN-QLTFLPELPESLEALDVS 188

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 16/167 (9%)

Query: 13  LSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKE----LDICENNFESLPASIMQLSRLTY 68
           L     SL+ LD+    L ++P         +E        EN    +P +I+ L     
Sbjct: 175 LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCT 234

Query: 69  LYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDEN 128
           + L   N L S    SLS +                      +   + +  +  + + EN
Sbjct: 235 IILED-NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD--AVTAWFPEN 291

Query: 129 ERAYVSSSIEFW---------FTNSMKLDDEANNKNLADSQLRIQHM 166
           +++ VS     +              +L D  + +N +  + ++   
Sbjct: 292 KQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAW 338

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 3/109 (2%)

Query: 5   LVTIPASI--LSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ 62
           L ++PA          +      R   +T IP+ I  L     + + +N   S     + 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 63  LSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEV 111
                  Y     +  S+ +   +      ++           S + ++
Sbjct: 252 QQTAQPDYHG-PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 10/114 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNF-------ESLP 57
           L ++     ++ L  L  +D+     ++ P +    S LK   I               P
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 58  ASIMQLSRLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQ-SLPEIPSSLE 109
             I     L  L +   N +  + E     L  LD ++   +   +  +   +E
Sbjct: 800 TGITTCPSLIQLQIG-SNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIE 852

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ- 62
           +L   PAS     +  L  LD     +  +    G    L +L +  N  E +P      
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAF 617

Query: 63  LSRLTYLYLSKCNMLLSLPELS-----LSLKWLDASNCKRLQSLP-EIPSSLE 109
             ++  L  S  N L  +P +        +  +D S   ++ S    I  S++
Sbjct: 618 TDQVEGLGFS-HNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMD 668

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 22/131 (16%)

Query: 2   CRSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICENNFES----- 55
            +       S   S L  L  ++L  C  +T +P  +  L  L+ L+I  N   S     
Sbjct: 477 AKQYENEELSW--SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 56  -----LPASIMQLSRLTYLYLSKCNMLLSLPELSL-----SLKWLDASNCKRLQSLPEI- 104
                L        ++   Y+   N L   P  +       L  LD  + K ++ L    
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFG 592

Query: 105 -PSSLEEVDAS 114
               L ++   
Sbjct: 593 TNVKLTDLKLD 603

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 6e-13
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGC------LSSLKELDICENNFESLP 57
            L  IP    +  +  +  +D     + +  + I C        +   + +  N  +  P
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 58  ASIM-QLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSL 101
             +    S ++ + LS  N++ S+PE SL  K  +  N   L ++
Sbjct: 690 TELFATGSPISTIILS-NNLMTSIPENSLKPKDGNYKNTYLLTTI 733

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 7e-13
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQE--------IGCLSSLKELDICENNFESL 56
           +   P  + ++  S +  + L    +T+IP+               L  +D+  N   SL
Sbjct: 685 IQKFPTELFAT-GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 57  PASIM--QLSRLTYLYLSKCNMLLSLPE--LSLS-LKWLDASNCKRLQS---LPEIPSSL 108
                   L  L+ + +S  N   S P   L+ S LK     + +  +    L + P+ +
Sbjct: 744 SDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 28/126 (22%)

Query: 11  SILSSGLSSLDRLDLRGC--GLTAIPQEIGCLSSLKELDICENNF--------------- 53
            I      SL    +      +T I + I  L+ L+ +    + F               
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 54  -----ESLPASIMQLSRLTYLYLSKCNMLLSLPE----LSLSLKWLDASNCKRLQSLPEI 104
                E+   S   L  LT + L  C  +  LP+    L   L+ L+ +   R  S  ++
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACN-RGISAAQL 533

Query: 105 PSSLEE 110
            +    
Sbjct: 534 KADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 28/121 (23%)

Query: 11  SILSSGLSSLDRLDLRGCGLTAIPQ------EIGCLSSLKELDICENNFESLPASIMQLS 64
            +       L+  DL    +   P+      +        ++    N    +  +I +L+
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 65  RLTYLYLSKC------------------NMLLSLPELSL----SLKWLDASNCKRLQSLP 102
           +L  +Y +                           ELS      L  ++  NC  +  LP
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 103 E 103
           +
Sbjct: 509 D 509

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 15  SGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFESLPASI-MQLSRLTYLYLS 72
                +  L L G G    +P  IG L+ LK L    ++          +          
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 73  KCNMLLSLPELSL----SLKWLDASNCKRLQSLPEI 104
           K  + +   ++ L     L   D      +   PE+
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDA-INRNPEM 414

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 36  EIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASN 94
           ++     +  L +     +  +P +I QL+ L  L     +  +S           D S 
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 95  CKRLQSLPEIPS 106
            ++ +       
Sbjct: 378 ERKHRIRMHYKK 389

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 7e-16
 Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
            L ++P        S L  L +    L ++P     L  L   +   N   SLPA     
Sbjct: 172 QLTSLPMLP-----SGLQELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLPALP--- 220

Query: 64  SRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
           S L  L +S  N L SLP L   LK L  S   RL SLP +PS L  +   
Sbjct: 221 SGLKELIVS-GNRLTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVY 269

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.2 bits (190), Expect = 8e-16
 Identities = 35/102 (34%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 13  LSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLS 72
           L      L  L +    L ++P        L +L    N   SLP      S L  L +S
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPMLP---SGLQELSVS 189

Query: 73  KCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
             N L SLP L   L  L A N  RL SLP +PS L+E+  S
Sbjct: 190 D-NQLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVS 229

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.1 bits (187), Expect = 2e-15
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
           +L ++PA         L  L++ G  LT++P     L  L        +  +LP+     
Sbjct: 72  NLTSLPALP-----PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG---- 122

Query: 64  SRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
             L  L++   N L SLP L   L+ L  S+  +L SLP +PS L ++ A 
Sbjct: 123 --LCKLWIF-GNQLTSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAY 169

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.2 bits (182), Expect = 9e-15
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ 62
           R    +   + +   +    L++   GLT +P  +   + +  L I +NN  SLPA    
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALP-- 80

Query: 63  LSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
              L  L +S  N L SLP L   L  L   +   L  LP +PS L ++   
Sbjct: 81  -PELRTLEVS-GNQLTSLPVLPPGLLELSIFSN-PLTHLPALPSGLCKLWIF 129

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           L ++P        S L +L      LT++P        LKEL +  N   SLP      S
Sbjct: 193 LASLPTLP-----SELYKLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLP---S 241

Query: 65  RLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPE 103
            L  L +S  N L SLP L   L  L      +L  LPE
Sbjct: 242 ELKELMVSG-NRLTSLPMLPSGLLSLSVYRN-QLTRLPE 278

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 14/121 (11%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           L ++P        S L  L +    LT +P+ +  LSS   +++  N         ++  
Sbjct: 253 LTSLPMLP-----SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307

Query: 65  RLTYLY----LSKCNMLLSLPELSLSLK-----WLDASNCKRLQSLPEIPSSLEEVDASV 115
                Y    +       S P  + +L      WL  +               +E +A  
Sbjct: 308 TSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADA 367

Query: 116 F 116
           F
Sbjct: 368 F 368

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICE------NNF-ESL 56
            L  +     ++ L  L  +DL     +  P +    S+LK   I        N      
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 57  PASIMQLSRLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPEIPSSL 108
           P  I     LT L +   N +  + E    ++  LD  +     S+    S +
Sbjct: 559 PEGITLCPSLTQLQIG-SNDIRKVNEKITPNISVLDIKDNP-NISID--LSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 6   VTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LS 64
             +  S+    +  L  L+     L       G    L  L++  N    +PA+      
Sbjct: 320 FPVETSL--QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 65  RLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSL 101
           ++  L  +  N L  +P         DA +   + ++
Sbjct: 378 QVENLSFAH-NKLKYIPN------IFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 18/121 (14%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIP--------QEIGCLSSLKELDICENNFES 55
            +   P  + S+  S L  ++L G  LT IP        +       L  +D+  N    
Sbjct: 444 QISKFPKELFST-GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 56  LPASIM--QLSRLTYLYLSKCNMLLSLPE--LSL-SLKWLDASNCKRLQS---LPEIPSS 107
           L        L  L  + LS  N     P   L+  +LK     N +  Q    L E P  
Sbjct: 503 LSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 108 L 108
           +
Sbjct: 562 I 562

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRG--------CGLTAIPQEIGCLSSLKELDICENNFES 55
            L  IP    +  +S +  +D                +        ++  +++  N    
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 56  LPASI-MQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSL 101
            P  +    S L+ + L   NML  +P+ SL  +  +  N   L S+
Sbjct: 448 FPKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 19/117 (16%)

Query: 2   CRSLVTIPASILSSGLSSLDRLDLRGCG-LTAIPQEIGCLSSLKELDICENNFESLP--- 57
            +   T         L  L  +++  C  LT +P  +  L  ++ +++  N   S     
Sbjct: 235 AQQYKTEDLKW--DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 58  ------ASIMQLSRLTYLYLSKCNMLLSLP-ELSL----SLKWLDASNCKRLQSLPE 103
                 A      ++  +Y+   N L + P E SL     L  L+    + L+    
Sbjct: 293 DDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 23/120 (19%)

Query: 7   TIPASILSSGLSSLDRLDLRGC-GLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSR 65
           T          S L +  +       +I +         ++    NN   +  ++M+L++
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK 207

Query: 66  LTYLYLSKCN----------MLLSLPELSL------------SLKWLDASNCKRLQSLPE 103
           L   Y+                 +                   L  ++  NC  L  LP 
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 8/102 (7%)

Query: 15  SGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTY 68
           +    +  L L G G +  +P  IG L+ L+ L +  +  +       P  I        
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 69  LYLSKCNMLLSLPELSLSLKWLDASNCK--RLQSLPEIPSSL 108
               + +   +  +      + D              I  S 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 5/78 (6%)

Query: 36  EIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLS----KCNMLLSLPELSLSLKWL 90
            +     +  L +        +P +I QL+ L  L L     K N  L  P+   +    
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 91  DASNCKRLQSLPEIPSSL 108
           +     R+          
Sbjct: 136 EQKQKMRMHYQKTFVDYD 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           +  +   ++    + L  LDL    L  +  E    + +  + +  N    +  ++    
Sbjct: 181 IYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 65  RLTYLYLS----KCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEE 110
            L +  L      C  L      +  ++ +     K+L    E   ++  
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           + T+  + L++   +L+ L+L+   +  +  ++   + LK LD+  N    +       +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 65  RLTYLYLSKCNMLLSLPE----LSLSLKWLDASN----CKRLQSLPEIPSSLEEVDASVF 116
            +T++ L   N L+ + +       +L+  D       C  L+        ++ V     
Sbjct: 215 GVTWISLRN-NKLVLIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 117 EKLSKH 122
           +KL+  
Sbjct: 273 KKLTGQ 278

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQ 62
           SL    AS+      ++  LDL G  L+ I   ++   + L+ L++  N        +  
Sbjct: 21  SLKQALASLRQ-SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLES 78

Query: 63  LSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLP-EIPSSLEEVDAS 114
           LS L  L L+  N +  L     S++ L A+N   +  +        + +  +
Sbjct: 79  LSTLRTLDLNN-NYVQELLVGP-SIETLHAANN-NISRVSCSRGQGKKNIYLA 128

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 13  LSSGLSSLDRLDLRGCGLTAIPQEIG-CLSSLKELDICENNFESLPA-SIMQLSRLTYLY 70
           +    +      +    L      +     ++KELD+  N    + A  +   ++L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 71  LSKCNMLLSLPELSL--SLKWLDASNCKRLQSLPEIPS---------SLEEVDASVFEKL 119
           LS  N+L    +L    +L+ LD +N   +Q L   PS         ++  V  S  +  
Sbjct: 65  LS-SNVLYETLDLESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGK 122

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             LS+L  LDL    +  +        S++ L    NN   +  S  Q      +YL+  
Sbjct: 77  ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQG--KKNIYLAN- 129

Query: 75  NMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           N +  L +L       +++LD      + ++  
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNF 161

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 32  AIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLPELSL----S 86
           AI +     +  K   + +++ +   AS+ Q    +  L LS  N L  +    L     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTK 59

Query: 87  LKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           L+ L+ S+   L    ++   S+L  +D +
Sbjct: 60  LELLNLSSNV-LYETLDLESLSTLRTLDLN 88

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 2/82 (2%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
            LV I  ++      +L+  DLRG G            + +   + +   + L     + 
Sbjct: 225 KLVLIEKAL--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 64  SRLTYLYLSKCNMLLSLPELSL 85
             +  L          LP    
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFA 304

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIG---CLSSLKELDICENNFESLPASI 60
               +  S       SL  L L    L ++ +       L +L  LDI  N F  +P S 
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
               ++ +L LS    +  +      +L+ LD SN   L S       L+E+  S
Sbjct: 407 QWPEKMRFLNLSS-TGIRVVKTCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYIS 459

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             L +L  LD+       +P        ++ L++       +   I     L  L +S  
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSN- 440

Query: 75  NMLLSLPELSLSLKWLDASNCKRLQSLPEI--PSSLEEVD 112
           N L S       L+ L  S   +L++LP+      L  + 
Sbjct: 441 NNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMK 479

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS--IM 61
           + TI        L SL+ LDL    L+++     G LSSLK L++  N +++L  +    
Sbjct: 62  INTIEGDAFY-SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
            L+ L  L +        +  +      SL  L+      L++   
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQS 165

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 14  SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLS 72
           S    +    D R    T+IP  +   +++K LD+  N    +    +   + L  L L 
Sbjct: 1   SLSCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 73  KCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVDAS 114
             + + ++   +     SL+ LD S+   L SL        SSL+ ++  
Sbjct: 59  S-SRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLM 106

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 11  SILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLY 70
            + +    +L+ LD+    L +       L  L+EL I  N  ++LP +      L  + 
Sbjct: 424 VVKTCIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLPDA-SLFPVLLVMK 479

Query: 71  LSKCNMLLSLPELSL----SLKWLDASN 94
           +S+ N L S+P+       SL+ +    
Sbjct: 480 ISR-NQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIG-CLSSLKELDICENNFESL----PA 58
            L    +++ S  L  + R+ +    +  +P      L SL+ LD+ EN          A
Sbjct: 297 YLFYDLSTVYS-LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 59  SIMQLSRLTYLYLSKCNMLLSLPELSL------SLKWLDASNCKRLQSLPE---IPSSLE 109
                  L  L LS+ N L S+ +         +L  LD S       +P+    P  + 
Sbjct: 356 CKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMR 413

Query: 110 EVDAS 114
            ++ S
Sbjct: 414 FLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 11/181 (6%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQE-IGCLSSLKELDICENNFESLPA-SI 60
              T+  + L   L++L  L +      + I +     L+SL EL+I   +  +  + S+
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVF 116
             +  + +L L   +    L E+      S+++L+  +   L      P  ++EV + + 
Sbjct: 169 KSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMK 226

Query: 117 E-KLSKHSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMA-IASLRLF 174
           +         DE+    +         + ++ DD   N     +      ++ +  +   
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 175 S 175
           +
Sbjct: 287 T 287

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 15/113 (13%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
            L ++P          L+ L      LT +P+    L SL   +        LP      
Sbjct: 82  GLSSLPELP-----PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL---- 132

Query: 64  SRLTYLYLSKCNMLLSLPELSL--SLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
             L YL +S  N L  LPEL     LK +D  N   L+ LP++P SLE + A 
Sbjct: 133 --LEYLGVS-NNQLEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAG 181

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 12  ILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYL 71
           +          L+L   GL+++P+       L+ L    N+   LP     L  L     
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNN 121

Query: 72  SKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           +    L  LP     L++L  SN + L+ LPE+   S L+ +D  
Sbjct: 122 N-LKALSDLPP---LLEYLGVSNNQ-LEKLPELQNSSFLKIIDVD 161

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 22/123 (17%)

Query: 11  SILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL------- 63
             L     SL+ +      L  +P E+  L  L  +    N+ + LP   + L       
Sbjct: 166 KKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224

Query: 64  ------------SRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEV 111
                         LT +Y    N+L +LP+L  SL+ L+  +   L  LPE+P SL  +
Sbjct: 225 NILEELPELQNLPFLTTIYAD-NNLLKTLPDLPPSLEALNVRDN-YLTDLPELPQSLTFL 282

Query: 112 DAS 114
           D S
Sbjct: 283 DVS 285

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 13  LSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLS 72
           L     SL+ +      L  +P E+  L  L  +    N  ++LP     L  L      
Sbjct: 210 LPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD-- 266

Query: 73  KCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
             N L  LPEL  SL +LD S       L E+P +L  ++AS
Sbjct: 267 --NYLTDLPELPQSLTFLDVSEN-IFSGLSELPPNLYYLNAS 305

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 13  LSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL--------- 63
           L     SL+ L++R   LT +P+    L+ L   +   +    LP ++  L         
Sbjct: 252 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 311

Query: 64  -----SRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
                  L  L +S  N L+ LP L   L+ L AS    L  +PE+P +L+++   
Sbjct: 312 LCDLPPSLEELNVSN-NKLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVE 365

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             L  L  +      L  +P       SL+ L++ +N    LP     L+ L        
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSE---- 286

Query: 75  NMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
           N+   L EL  +L +L+AS+ + ++SL ++P SLEE++ S
Sbjct: 287 NIFSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVS 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 25/129 (19%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL- 63
           L+ +PA         L+RL      L  +P+      +LK+L +  N     P     + 
Sbjct: 329 LIELPALP-----PRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVE 380

Query: 64  ---------------SRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSL 108
                            L  L++   N L   P++  S++ L  ++ + +        + 
Sbjct: 381 DLRMNSHLAEVPELPQNLKQLHVE-TNPLREFPDIPESVEDLRMNSERVVDPYEFAHETT 439

Query: 109 EEVDASVFE 117
           ++++  VFE
Sbjct: 440 DKLEDDVFE 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 16  GLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKC 74
             + L         LT +P E   + S  E     + +E + P    +   +    L  C
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 75  NMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
                   L      L+ +N   L SLPE+P  LE + AS
Sbjct: 69  --------LDRQAHELELNNLG-LSSLPELPPHLESLVAS 99

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 8e-14
 Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
            +  +   ++    + L  LDL    L  +  E    + +  + +  N    +  ++   
Sbjct: 180 FIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236

Query: 64  SRLTYLYLS----KCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSL 108
             L +  L      C  L      +  ++ +     K+L    E   ++
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 11/127 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           + T+  + L++   +L+ L+L+   +  +  ++   + LK LD+  N    +       +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 65  RLTYLYLSKCNMLLSLPE----LSLSLKWLDASN----CKRLQSLPEIPSSLEEVDASVF 116
            +T++ L   N L+ + +       +L+  D       C  L+        ++ V     
Sbjct: 215 GVTWISLRN-NKLVLIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 117 EKLSKHS 123
           +KL+  +
Sbjct: 273 KKLTGQN 279

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQ 62
           SL    AS+      ++  LDL G  L+ I   ++   + L+ L++  N        +  
Sbjct: 21  SLKQALASLRQ-SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES 78

Query: 63  LSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLP-EIPSSLEEVD 112
           LS L  L L+  N +  L     S++ L A+N   +  +        + + 
Sbjct: 79  LSTLRTLDLNN-NYVQELLVGP-SIETLHAANN-NISRVSCSRGQGKKNIY 126

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 13  LSSGLSSLDRLDLRGCGLTAIPQEIG-CLSSLKELDICENNFESLPA-SIMQLSRLTYLY 70
           +    +      +    L      +     ++KELD+  N    + A  +   ++L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 71  LSKCNMLLSLPELSL--SLKWLDASNCKRLQSLPEIPS---------SLEEVDASVFEKL 119
           LS  N+L    +L    +L+ LD +N   +Q L   PS         ++  V  S  +  
Sbjct: 65  LSS-NVLYETLDLESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGK 122

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 6e-11
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP--ASI 60
           ++  +  S           + L    +T +   + GC S ++ LD+  N  +++      
Sbjct: 110 NISRVSCSRGQG----KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL--SLKWLDASNCKRLQSLPE 103
                L +L L   N +  +    +   LK LD S+  +L  +  
Sbjct: 166 ASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSN-KLAFMGP 208

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             LS+L  LDL    +  +        S++ L    NN   +  S  Q      +YL+  
Sbjct: 77  ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQG--KKNIYLAN- 129

Query: 75  NMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           N +  L +L       +++LD      + ++  
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNF 161

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 32  AIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLPELSL----S 86
           AI +     +  K   + +++ +   AS+ Q    +  L LS  N L  +    L     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTK 59

Query: 87  LKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           L+ L+ S+   L    ++   S+L  +D +
Sbjct: 60  LELLNLSSN-VLYETLDLESLSTLRTLDLN 88

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 7   TIPASILSSGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-SLPA-SIMQL 63
            IP  +  +   +L  LDL G     A+P   G  S L+ L +  NNF   LP  +++++
Sbjct: 284 EIPDFLSGA-CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 64  SRLTYLYLSKCNMLLSLPE----LSLSLKWLDASNCKRLQSLPEIPSSL 108
             L  L LS       LPE    LS SL  LD S+         I  +L
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSG--PILPNL 388

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 11  SILSSGLSSLDRLDLRGCGLT-AIPQEI-GCLSSLKELDICENNFE-SLPASIMQLSRLT 67
            I    L SL  L L     T  IP  + G   +L  LD+  N+F  ++P      S L 
Sbjct: 262 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 68  YLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQ-----SLPEIPSSLEEVDAS 114
            L LS  N    LP  +L     LK LD S  +        SL  + +SL  +D S
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLS 376

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 22/115 (19%)

Query: 7   TIPASILSSGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-SLPASIMQLS 64
            I  ++  +  ++L  L L+  G T  IP  +   S L  L +  N    ++P+S+  LS
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 65  RLTYLYLSKCNML-----LSLPELSLSLKWLDAS-------------NCKRLQSL 101
           +L  L L   NML       L  +  +L+ L                NC  L  +
Sbjct: 443 KLRDLKLWL-NMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWI 495

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 7e-11
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 7   TIPASILSSG-LSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-SLPASIMQL 63
                 + S     L  L + G  ++  +   +    +L+ LD+  NNF   +P  +   
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 64  SRLTYLYLSKCNMLLSLPE----LSLSLKWLDASNCKRLQ-SLPEIP-SSLEEVDAS 114
           S L +L +S   +           +  LK L+ S+ +     +P +P  SL+ +  +
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQ-FVGPIPPLPLKSLQYLSLA 277

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 9e-11
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 7   TIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFE-SLPA--SIMQL 63
            + +S+LS  L+ L+ L L    +        C +SL  LD+  N+    +    S+   
Sbjct: 68  AVSSSLLS--LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 64  SRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSL 108
           S L +L +S   +             SL+ LD S    +          
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISG--ANVVGW 171

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 9e-09
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 18  SSLDRLDLRGCGLT----AIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK 73
             +  +DL    L     A+   +  L+ L+ L +  ++     +     + LT L LS+
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 74  CNMLLSLPEL----SLS-LKWLDASNCKRLQSLPEIP-----SSLEEVDAS 114
            ++   +  L    S S LK+L+ S+   L    ++      +SLE +D S
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLS 159

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 16/112 (14%)

Query: 7   TIPASILSSGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-SLPASIMQLS 64
                +    LS+ +  ++                 S+  LD+  N     +P  I  + 
Sbjct: 599 IRSEQLNR--LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 65  RLTYLYLSKCNML-----LSLPELSLSLKWLDAS-NCKRLQSLPEIPSSLEE 110
            L  L L   N +       + +L   L  LD S N  +L     IP ++  
Sbjct: 657 YLFILNLG-HNDISGSIPDEVGDLR-GLNILDLSSN--KLDG--RIPQAMSA 702

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 7   TIPASILSSGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-SLPASIMQLS 64
            IP  I    L +L  L L     +  IP E+G   SL  LD+  N F  ++PA++ + S
Sbjct: 505 EIPKWI--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

Query: 65  RLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLS 120
                        + +    +  +   A N    Q        L  +       ++
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG--IRSEQLNRLSTRNPCNIT 616

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 8   IPASILSSGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-SLPASIMQLSR 65
           IP  I    +  L  L+L    ++ +IP E+G L  L  LD+  N  +  +P ++  L+ 
Sbjct: 648 IPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 66  LTYLYLS 72
           LT + LS
Sbjct: 706 LTEIDLS 712

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           L  I        +  L+RL +    L A+      + +LK LD+  N+   +  +  Q  
Sbjct: 266 LEKIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324

Query: 65  RLTYLYLSKCNMLLSLPELSL-SLKWLDASN 94
           RL  LYL   N +++L   +  +LK L  S+
Sbjct: 325 RLENLYLDH-NSIVTLKLSTHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ 62
           ++  +PA++L      ++ L+L    +  I         ++++L +  N    LP  + Q
Sbjct: 62  TMRKLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 63  -LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
            +  LT L L + N L SLP         L  L  SN   L+ + +
Sbjct: 121 NVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIED 164

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 22/130 (16%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           L  I         +SL  L L    LT +   +  + SL   ++  N   +L        
Sbjct: 159 LERIEDDTFQ-ATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAI----PI 211

Query: 65  RLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPEIPS------------SLEEV 111
            +  L  S  N +  +       L  L   +   L     + +             LE++
Sbjct: 212 AVEELDASH-NSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKI 269

Query: 112 DASVFEKLSK 121
               F K+ +
Sbjct: 270 MYHPFVKMQR 279

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 13/125 (10%), Positives = 43/125 (34%), Gaps = 18/125 (14%)

Query: 2   CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM 61
                 I +++    +     +D++   +    ++I  L++ K +    +    LPA+++
Sbjct: 13  QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALL 71

Query: 62  Q-LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVF 116
               ++  L L+    +  +   +     +++ L                 +  +   VF
Sbjct: 72  DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNA-----------IRYLPPHVF 119

Query: 117 EKLSK 121
           + +  
Sbjct: 120 QNVPL 124

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 11/172 (6%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFE--SLPASIMQ 62
           L+ +  +        L+ L L    +  +   +    +LK L +  N+++  SL A    
Sbjct: 313 LLHVERNQ--PQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRN 368

Query: 63  LSRLTYLYLSK-CNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
           ++R       + C +   L       +       + LQ +    +S+ E       + S 
Sbjct: 369 VARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL--TSVVEKVQRAQGRCSA 426

Query: 122 HSHYDE--NERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASL 171
               +   +   Y++         + +L+ E N       QL  + +    L
Sbjct: 427 TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQL 478

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           L  I        +  L+RL +    L A+      + +LK LD+  N+   +  +  Q  
Sbjct: 260 LEKIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318

Query: 65  RLTYLYLSKCNMLLSLPELSL-SLKWLDASN 94
           RL  LYL   N +++L   +  +LK L  S+
Sbjct: 319 RLENLYLDH-NSIVTLKLSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 19/124 (15%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ 62
           ++  +PA++L      ++ L+L    +  I         ++++L +  N    LP  + Q
Sbjct: 56  TMRKLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114

Query: 63  -LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFE 117
            +  LT L L + N L SLP         L  L  SN             LE ++   F+
Sbjct: 115 NVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNN-----------LERIEDDTFQ 162

Query: 118 KLSK 121
             + 
Sbjct: 163 ATTS 166

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 22/130 (16%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           L  I         +SL  L L    LT +   +  + SL   ++  N   +L        
Sbjct: 153 LERIEDDTFQ-ATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAI----PI 205

Query: 65  RLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPEIPS------------SLEEV 111
            +  L  S  N +  +       L  L   +   L     + +             LE++
Sbjct: 206 AVEELDASH-NSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKI 263

Query: 112 DASVFEKLSK 121
               F K+ +
Sbjct: 264 MYHPFVKMQR 273

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 13/123 (10%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ- 62
               I +++    +     +D++   +    ++I  L++ K +    +    LPA+++  
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDS 67

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEK 118
             ++  L L+    +  +   +     +++ L                 +  +   VF+ 
Sbjct: 68  FRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNA-----------IRYLPPHVFQN 115

Query: 119 LSK 121
           +  
Sbjct: 116 VPL 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 23/132 (17%)

Query: 11  SILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM--QLSRLTY 68
           S    G +SL  LDL   G+  +      L  L+ LD   +N + +    +   L  L Y
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 69  LYLSKCNMLLSLPELSL----SLKWLDASNCKRLQS--LPEIPSSL-------------E 109
           L +S                 SL+ L  +     Q   LP+I + L             E
Sbjct: 426 LDISH-THTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 110 EVDASVFEKLSK 121
           ++  + F  LS 
Sbjct: 484 QLSPTAFNSLSS 495

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFES--LPASIM 61
           L  +    +   L +L  LD+           I   LSSL+ L +  N+F+   LP    
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE----IPSSLEEVD 112
           +L  LT+L LS+   L  L   +     SL+ L+ ++  +L+S+P+      +SL+++ 
Sbjct: 468 ELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 15  SGLSSLDRLDLRGCGLTAI---PQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYL 71
             L SL+ LDL   GL+      Q     +SLK LD+  N   ++ ++ + L +L +L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 72  SKCNMLLSLPELSL-----SLKWLDASNCKRLQSLPE 103
              + L  + E S+     +L +LD S+    +    
Sbjct: 404 QH-SNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN 438

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 22/127 (17%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESL--PASI 60
            + ++     S GLSSL +L      L ++    IG L +LKEL++  N  +S   P   
Sbjct: 87  PIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 61  MQLSRLTYLYLS-------KCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDA 113
             L+ L +L LS        C  L  L ++ L    LD S              +  +  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-----------MNFIQP 194

Query: 114 SVFEKLS 120
             F+++ 
Sbjct: 195 GAFKEIR 201

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 24  DLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLPE 82
                    IP  +    S K LD+  N    L + S      L  L LS+   + ++ +
Sbjct: 13  QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIED 69

Query: 83  LSL----SLKWLDASNCKRLQSLPE----IPSSLEEVDAS 114
            +      L  L  +    +QSL        SSL+++ A 
Sbjct: 70  GAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAV 108

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLK----ELDICENNFESLPA 58
            + +       S L++L+ LDL    + +I    +  L  +      LD+  N    +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 59  SIMQLSRLTYLYLSKCNMLLSLPEL------SLSLKWLDASNCKRLQSLPEIPSSL 108
              +  RL  L L      L++ +        L +  L     +   +L +   S 
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
           ++  +     + G   L+ ++ +      +      L SLK L    N   +  + +  L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLK-----LKSLKRLTFTSNKGGNAFSEV-DL 346

Query: 64  SRLTYLYLSKCNM-LLSLPELSL----SLKWLDASNCKRLQSLPEIPSSL 108
             L +L LS+  +        S     SLK+LD S    + ++      L
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGL 395

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 7   TIPASILSSGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-SLPASIMQLS 64
            IP +I  + L+ L  L +    ++ AIP  +  + +L  LD   N    +LP SI  L 
Sbjct: 92  PIPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 65  RLTYLYLSKCNML-----LSLPELSLSLKWLDASNCKRLQSLPEIPSSL 108
            L  +     N +      S    S     +  S   RL    +IP + 
Sbjct: 150 NLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRN-RLTG--KIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 13/95 (13%)

Query: 7   TIPASILSSGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFE-SLPASIMQLS 64
            IP +       +L  +DL    L        G   + +++ + +N+    L   +    
Sbjct: 189 KIPPTF---ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244

Query: 65  RLTYLYLSKCNML-----LSLPELSLSLKWLDASN 94
            L  L L   N +       L +L   L  L+ S 
Sbjct: 245 NLNGLDLRN-NRIYGTLPQGLTQLK-FLHSLNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 33/137 (24%)

Query: 4   SLVTIPASILS-SGLSS-LDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFE---SLP 57
           +L+ I   + + + LSS L   D        +          +  LD+   N      +P
Sbjct: 10  ALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69

Query: 58  ASIMQLSRLTYLYLSKCNML-----LSLPELSLSLKWLDAS-------------NCKRLQ 99
           +S+  L  L +LY+   N L      ++ +L+  L +L  +               K L 
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV 128

Query: 100 SLP--------EIPSSL 108
           +L          +P S+
Sbjct: 129 TLDFSYNALSGTLPPSI 145

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 33/124 (26%), Positives = 43/124 (34%), Gaps = 22/124 (17%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM-Q 62
            L  +        L  L  LDL    L ++P     L +L  LD+  N   SLP   +  
Sbjct: 66  ELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 63  LSRLTYLYLSKCNMLLSLPE-----LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFE 117
           L  L  LYL   N L +LP          L+ L  +N   L  LP          A +  
Sbjct: 123 LGELQELYLKG-NELKTLPPGLLTPTP-KLEKLSLANNN-LTELP----------AGLLN 169

Query: 118 KLSK 121
            L  
Sbjct: 170 GLEN 173

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 14  SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASI-MQLSRLTYLYLS 72
            S ++S   ++     LTA+P ++        L + EN   +   +  M  +RLT L L 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 73  KCNMLLSLPELS--LSLKWLDASNCKRLQSLPEIPSSL 108
           +   L  L        L  LD S+  +LQSLP +  +L
Sbjct: 64  R-AELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTL 99

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQL 63
           L T+P  +L+     L++L L    LT +P  +   L +L  L + EN+  ++P      
Sbjct: 136 LKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194

Query: 64  SRLTYLYLSK------CNML 77
             L + +L        C +L
Sbjct: 195 HLLPFAFLHGNPWLCNCEIL 214

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           +GL++L  L+L    L  I   I  L +L  L +  NN   +   +  L++L  L+    
Sbjct: 284 AGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN- 340

Query: 75  NMLLSLPELSL--SLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N +  +  L+   ++ WL A + + +  L  +   + + ++  +
Sbjct: 341 NKVSDVSSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             L++LD L L G  L  I   +  L++L +LD+  N   +L   +  L++LT L L   
Sbjct: 218 GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA- 274

Query: 75  NMLLSLPELSL--SLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N + ++  L+   +L  L+ +  + L+ +  I    +L  +   
Sbjct: 275 NQISNISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLY 317

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L++L+RLD+    ++ I   +  L++L+ L    N    +   +  L+ L  L L+  
Sbjct: 174 ANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNG- 230

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N L  +  L+   +L  LD +N + + +L  +   + L E+   
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLG 273

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 16/104 (15%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L  +  L     G+ +I   +  L++L +++   N    +   +  L++L  + ++  
Sbjct: 43  TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN- 99

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N +  +  L+   +L  L   N + +  +  +   ++L  ++ S
Sbjct: 100 NQIADITPLANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELS 142

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L++L  L L    +T I   +  L++L  L++  N    +  ++  L+ L  L     
Sbjct: 109 ANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-- 164

Query: 75  NMLLSLPELSL--SLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N +  L  L+   +L+ LD S+ K +  +  +   ++LE + A+
Sbjct: 165 NQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIAT 207

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           SGL+SL +L          P  +  L++L+ LDI  N    +   + +L+ L  L  +  
Sbjct: 153 SGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN- 208

Query: 75  NMLLSLPELSL--SLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N +  +  L +  +L  L  +  + L+ +  +   ++L ++D +
Sbjct: 209 NQISDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLA 251

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 10/98 (10%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L++++ L      ++ +   +  L+ + +L + +  + + P +      +     +  
Sbjct: 350 ANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIPSSLEE 110
             L++   +S   S    D +         E+  +  +
Sbjct: 409 GALIAPATISDGGSYTEPDITW-NLPSYTNEVSYTFSQ 445

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 37  IGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSL--SLKWLDASN 94
              L+   +  + + N      S   L ++T L   +   + S+  +    +L  ++ SN
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSN 77

Query: 95  CKRLQSLPEIP--SSLEEVDAS 114
            + L  +  +   + L ++  +
Sbjct: 78  NQ-LTDITPLKNLTKLVDILMN 98

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 17/104 (16%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             L++L  L L    ++ I   +  L+ +  L++  N+  S  + +  ++ L YL +++ 
Sbjct: 107 QNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE- 164

Query: 75  NMLLSLPELSL--SLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           + +  +  ++    L  L  +   +++ +  +   +SL    A 
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNYN-QIEDISPLASLTSLHYFTAY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           S L  L  L +    +T I   +  L++L+EL + E+N   +   +  L+++  L L   
Sbjct: 85  SNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGAN 142

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           + L  L  LS    L +L  +  K ++ +  I   + L  +  +
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 16/109 (14%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + ++ L+ L +    +T +   +  LS L  L+I  N    + A +  L++L  L +   
Sbjct: 218 ANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGS- 274

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
           N +  +  L+    L  L  +N +           L   D  V   L+ 
Sbjct: 275 NQISDISVLNNLSQLNSLFLNNNQ-----------LGNEDMEVIGGLTN 312

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 1   GCRSLVTIPASILS----SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESL 56
           G  +L T+PA I      + L+   R  L+   +T +      L S+ +L +      S+
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASI 59

Query: 57  PASIMQLSRLTYLYLSKCNMLLSLPELSL--SLKWLDASNCKRLQSLPEIP--SSLEEVD 112
              I  L+ L YL L+    +  +  LS    L  L     K +  +  +   ++L E+ 
Sbjct: 60  QG-IEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELY 116

Query: 113 AS 114
            +
Sbjct: 117 LN 118

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L+SL         +T I   +  ++ L  L I  N    L   +  LS+LT+L +   
Sbjct: 196 ASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT- 252

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEI--PSSLEEVDAS 114
           N +  +  +     LK L+  + + +  +  +   S L  +  +
Sbjct: 253 NQISDINAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLN 295

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSK 73
             L+ L  L++    ++ I   +  LS L  L +  N   +     I  L+ LT L+LS+
Sbjct: 262 KDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 74  CNMLLSLPELS--LSLKWLDASNCK 96
            N +  +  L+    +   D +N  
Sbjct: 321 -NHITDIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L+ L  L L    +  I   +  L+SL       N    +   +  ++RL  L +   
Sbjct: 174 ANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGN- 230

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N +  L  L+    L WL+    + +  +  +   + L+ ++  
Sbjct: 231 NKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVG 273

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 21/124 (16%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASI-MQ 62
           L T+PA I    L +L+ L +    L A+P  +   L +L EL +  N  +SLP  +   
Sbjct: 73  LQTLPAGIFK-ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131

Query: 63  LSRLTYLYLSKCNMLLSLPE-----LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFE 117
           L++LTYL L   N L SLP+     L+ SLK L   N + L+ +P             F+
Sbjct: 132 LTKLTYLSLGY-NELQSLPKGVFDKLT-SLKELRLYNNQ-LKRVP----------EGAFD 178

Query: 118 KLSK 121
           KL++
Sbjct: 179 KLTE 182

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 21/125 (16%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM- 61
            L ++P+      L+ L  L L    L  +P  I   L +L+ L + +N  ++LP  +  
Sbjct: 48  KLSSLPSKAFH-RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106

Query: 62  QLSRLTYLYLSKCNMLLSLPE-----LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVF 116
           QL  L  L L   N L SLP      L+  L +L     + LQSLP            VF
Sbjct: 107 QLVNLAELRLD-RNQLKSLPPRVFDSLT-KLTYLSLGYNE-LQSLP----------KGVF 153

Query: 117 EKLSK 121
           +KL+ 
Sbjct: 154 DKLTS 158

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 3e-11
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 2   CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM 61
            RS   +  S+L    + +  L L    LT +   +  L  +  LD+  N   +LP ++ 
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALA 483

Query: 62  QLSRLTYLYLSKCNMLLSLPELS--LSLKWLDASNCKRLQSLPEIP-----SSLEEVD 112
            L  L  L  S  N L ++  ++    L+ L   N + LQ    I        L  ++
Sbjct: 484 ALRCLEVLQAS-DNALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLN 539

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 19  SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNML 77
           S +  D     LT +P ++   +++  L++  N    L  A+  + S+LT L +   N +
Sbjct: 5   SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-FNTI 61

Query: 78  LSLPELSL----SLKWLDASNCKRLQSLPEI----PSSLEEVDAS 114
             L          LK L+  + + L  L +      ++L E+   
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLM 105

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 15/123 (12%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESL-PASIM 61
           ++  +   +    L  L  L+L+   L+ +  +     ++L EL +  N+ + +     +
Sbjct: 60  TISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEI------PSSLEEV 111
           +   L  L LS  N L S    +     +L+ L  SN K +Q+L          SSL+++
Sbjct: 119 KQKNLITLDLSH-NGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKL 176

Query: 112 DAS 114
           + S
Sbjct: 177 ELS 179

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA---S 59
           S+  I  +       +L  LDL   GL++        L +L+EL +  N  ++L +    
Sbjct: 108 SIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 60  IMQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP------SSLE 109
           I   S L  L LS  N +             L  L  +N +   SL E        +S+ 
Sbjct: 167 IFANSSLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 110 EVDAS 114
            +  S
Sbjct: 226 NLSLS 230

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA-SIM 61
            L  +PA+  +   S L  LD+    ++ + P+    L  LK L++  N    L   +  
Sbjct: 36  QLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVD 112
             + LT L+L   N +  +         +L  LD S+   L S          +L+E+ 
Sbjct: 95  FCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELL 151

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 16/120 (13%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASI 60
             L  +P  + ++    +  L+L    L  +        S L  LD+  N    L P   
Sbjct: 14  LKLTQVPDDLPTN----ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVD 112
            +L  L  L L     L  L + +     +L  L   +   +Q +   P     +L  +D
Sbjct: 70  QKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLD 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPASI-MQLSRLTYLYLS 72
            GLS L  L+L   G   IP E    L  LK +D+  NN  +LPAS+      L  L L 
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 73  KCNMLLSLPELSL-----SLKWLDASN 94
           K N++ S+ +        +L  LD   
Sbjct: 593 K-NLITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 4   SLVTIPASILSS-GLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESL--PAS 59
           SL T+      S   S L  L+L    ++ I  +    L  L+ LD+  N          
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 60  IMQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSL 108
              L  +  +YLS  N  L L   S     SL+ L       L+++   PS  
Sbjct: 426 WRGLENIFEIYLSY-NKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPF 476

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 23/130 (17%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGC---GLTAIPQEIGCLSSLKELDICENNFESLPASIM 61
            + +  +  +  + SL RL LR      + + P     L +L  LD+  NN  ++   ++
Sbjct: 442 YLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 62  Q-LSRLTYLYLSKCNMLLSLPELSL------------SLKWLDASNCKRLQSLPEIP--- 105
           + L +L  L L   N L  L + +              L  L+  +      +P      
Sbjct: 501 EGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKD 558

Query: 106 -SSLEEVDAS 114
              L+ +D  
Sbjct: 559 LFELKIIDLG 568

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 4   SLVTIPASILSS-GLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASI 60
            L T   +       ++L  LDL    L  +       L  L+   +  NN + L   S+
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIP---SSLEEVDASVFE 117
             L  + YL L +     S+   SL    +D  + + L+ L  +    + +  + +++F 
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 118 KLSK 121
            L  
Sbjct: 351 GLIN 354

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 24/129 (18%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGC----LSSLKELDICENNFESLPAS 59
            +           +  L  L L    L     E  C     +S++ L +  +   +   +
Sbjct: 182 QIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 60  I---MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVD 112
               ++ + LT L LS  N L  +   S      L++                  ++ + 
Sbjct: 241 TFLGLKWTNLTMLDLSY-NNLNVVGNDSFAWLPQLEYFFLEYNN-----------IQHLF 288

Query: 113 ASVFEKLSK 121
           +     L  
Sbjct: 289 SHSLHGLFN 297

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 22/128 (17%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIG-----CLSSLKELDICENNFESLPA 58
            +  I +++ + GL +L  L L     +              S L  L++ +N    + +
Sbjct: 340 DIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 59  -SIMQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDA 113
            +   L  L  L L    +   L         ++  +  S  K             ++  
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-----------YLQLTR 447

Query: 114 SVFEKLSK 121
           + F  +  
Sbjct: 448 NSFALVPS 455

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 39  CLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLS----LKWLDASN 94
           C  S +  D        +P  +   + +T L L+  N L  LP  + +    L  LD   
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDL--PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 95  CKRLQSLPE 103
              +  L  
Sbjct: 59  NT-ISKLEP 66

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGC---LSSLKELDICENNFESLPASIM 61
           L ++P  +    L+ L +L L   GL+            +SLK LD+  N   ++ ++ +
Sbjct: 40  LQSLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL-----SLKWLDASNCKRLQSLPE 103
            L +L +L     + L  + E S+     +L +LD S+    +    
Sbjct: 99  GLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN 143

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNF-ESLPASIMQ 62
           L  +    +   L +L  LD+           I   LSSL+ L +  N+F E+    I  
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 63  -LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
            L  LT+L LS+   L  L   +     SL+ L+ S+     SL  
Sbjct: 173 ELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT 216

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 19  SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNM- 76
           S   +     GLT++P  I   SS   L++  N  +SLP  +   L++LT L LS   + 
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 77  LLSLPELSL----SLKWLDASNCKRLQSLPE 103
                  S     SLK+LD S    + ++  
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNG-VITMSS 95

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ 62
            L  +  +  +  LSSL  L++      ++      CL+SL+ LD   N+  +     +Q
Sbjct: 186 QLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 63  --LSRLTYLYLSK------CNML 77
              S L +L L++      C   
Sbjct: 245 HFPSSLAFLNLTQNDFACTCEHQ 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 9e-11
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 10/116 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASI-MQ 62
           + TI     + GL++L+ L+L    LT IP      LS LKEL +  N  ES+P+    +
Sbjct: 100 IRTIEIGAFN-GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP--SSLEEVD 112
           +  L  L L +   L  + E +     +L++L+ + C  L+ +P +     L+E+D
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELD 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           +  I  +     L  L+ L L    +  I       L++L  L++ +N   ++P      
Sbjct: 76  IQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           LS+L  L+L   N + S+P  +     SL+ LD    KRL  + E
Sbjct: 135 LSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPASIMQ 62
            L  I       GL  L +L +    +  I +     L SL E+++  NN   LP  +  
Sbjct: 218 HLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 63  -LSRLTYLYLSK------CNML 77
            L  L  ++L        C++L
Sbjct: 277 PLHHLERIHLHHNPWNCNCDIL 298

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLS 72
           + L  LD LDL G  L+AI       L  L++L + ++  + +   +   L  L  + L+
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 73  KCNMLLSLPELSL----SLKWLDASN 94
             N L  LP         L+ +   +
Sbjct: 264 H-NNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 18  SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNM 76
           +   ++      L  +P  I   ++ + L++ EN  + +  +  + L  L  L LS+ N 
Sbjct: 43  NQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NH 99

Query: 77  LLSLPELSL----SLKWLDASNCKRLQSLPE 103
           + ++   +     +L  L+  +  RL ++P 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDN-RLTTIPN 129

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 7   TIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLS 64
                I +  L +L  LDL  C L  + P     LSSL+ L++  NNF SL       L+
Sbjct: 460 NFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 65  RLTYLYLSKCNMLLSLPELSL-----SLKWLDASN 94
            L  L  S  N +++  +  L     SL +L+ + 
Sbjct: 519 SLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 15  SGLSSLDRLDLRGCGLTA---IPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYL 71
             L SL+ LDL   GL+      Q     +SLK LD+  N   ++ ++ + L +L +L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 72  SKCNMLLSLPELSL-----SLKWLDASNCKRLQSLP 102
              + L  + E S+     +L +LD S+    +   
Sbjct: 404 QH-SNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASI 60
            +   IP ++  S       LDL    L  +          L+ LD+     +++   + 
Sbjct: 17  LNFYKIPDNLPFS----TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVD 112
             LS L+ L L+  N + SL   +     SL+ L A     L SL   P     +L+E++
Sbjct: 73  QSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELN 130

Query: 113 AS 114
            +
Sbjct: 131 VA 132

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 14/118 (11%)

Query: 8   IPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFES--LPASIMQLS 64
              S+    L +L  LD+               LSSL+ L +  N+F+   LP    +L 
Sbjct: 412 SEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 65  RLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVDAS 114
            LT+L LS+   L  L   +     SL+ L+ S+     SL   P    +SL+ +D S
Sbjct: 471 NLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYS 526

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA-SIM 61
            L  + +         L  LDL  C +  I       LS L  L +  N  +SL   +  
Sbjct: 39  PLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSL 108
            LS L  L   + N L SL    +    +LK L+ ++   +QS   +P   
Sbjct: 98  GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFK-LPEYF 145

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFESL--PASI 60
            + ++     S GLSSL +L      L +     IG L +LKEL++  N  +S   P   
Sbjct: 87  PIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 61  MQLSRLTYLYLSKCN-------MLLSLPELSLSLKWLDASNCK 96
             L+ L +L LS           L  L ++ L    LD S   
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 24  DLRGCGLTAIPQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLPE 82
                    IP  +    S K LD+  N    L   S      L  L LS+C  + ++ +
Sbjct: 13  QCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED 69

Query: 83  LSL----SLKWLDASNCKRLQSLPEIP----SSLEEVDAS 114
            +      L  L  +    +QSL        SSL+++ A 
Sbjct: 70  GAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV 108

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLK----ELDICENNFESLPA 58
            + +       S L++L+ LDL    + +I   ++  L  +      LD+  N    +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 59  SIMQLSRLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPEIPSSLEEVDASVFE 117
              +  RL  L L      L++ +  +  L  L+       +   E   +LE+ D S  E
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--GNLEKFDKSALE 252

Query: 118 KLSK 121
            L  
Sbjct: 253 GLCN 256

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTA----IPQEIGCLSSLKELDICENNFESL 56
              +L     S L  GL +L   + R   L      I     CL+++    +     E +
Sbjct: 239 NEGNLEKFDKSALE-GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 57  PASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIP-SSLEEVDAS 114
                      +L L  C           SLK L  ++ K   +  E+   SLE +D S
Sbjct: 298 K-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           S       L+L  C     P     L SLK L    N   +   S + L  L +L LS+ 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSR- 356

Query: 75  NMLLSLPELSL------SLKWLDASNCKRLQSLPEIPSSL 108
           N L      S       SLK+LD S    + ++      L
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGL 395

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASI-M 61
           +L  + A    + L++L  L L    L  I  E    + +L+ LD+  N+  +L   +  
Sbjct: 50  NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
            L  L  L L   N ++ +   +      L+ L  S   ++   P 
Sbjct: 110 DLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 19  SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM--QLSRLTYLYLSKCNM 76
           + + L      L  +PQ +   S    LD+  NN   L A     +L+ L  L LS  + 
Sbjct: 19  ASNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH- 75

Query: 77  LLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
           L  +   +     +L++LD S+   L +L             +F  L  
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNH-LHTLD----------EFLFSDLQA 113

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI----GCLSSLKELDICENNFESLPASI 60
           +V +  +     ++ L +L L    ++  P E+      L  L  LD+  N  + LP + 
Sbjct: 124 IVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 61  MQ-LSRLTYLYLS 72
           +Q L       L 
Sbjct: 183 LQKLPAWVKNGLY 195

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPAS-IM 61
           S      S + +  ++L  LDL  C L  I   +   L  L+ L++  NN   L +S   
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASN 94
           QL  L+ L  S  N + +   +      SL + + +N
Sbjct: 519 QLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA-SIM 61
            L  + +   S   S L  LDL  C +  I  +    L  L  L +  N  +S    S  
Sbjct: 43  PLKILKSYSFS-NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP-----SSLEEVD 112
            L+ L  L   +   L SL    +    +LK L+ ++   + S          ++L  VD
Sbjct: 102 GLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVD 159

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 4   SLVTIPASILSS-GLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA--SI 60
           +L        S  G +SL  LDL   G   +      L  L+ LD   +  + +    + 
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE----IPSSLEEVD 112
           + L +L YL +S         +       SL  L  +      +         ++L  +D
Sbjct: 421 LSLEKLLYLDISY-TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 113 AS 114
            S
Sbjct: 480 LS 481

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 23  LDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP 81
                  L+ +P +I   SS K +D+  N  + L + S    S L +L LS+C  + ++ 
Sbjct: 16  YQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIE 72

Query: 82  ELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVDAS 114
           + +      L  L  +    +QS         +SLE + A 
Sbjct: 73  DKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAV 112

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 16/122 (13%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPA-SI 60
           + L  +P  I SS       +DL    L  +        S L+ LD+     E++   + 
Sbjct: 21  QKLSKVPDDIPSS----TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVD 112
             L  L+ L L+  N + S    S     SL+ L A    +L SL   P     +L++++
Sbjct: 77  HGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLN 134

Query: 113 AS 114
            +
Sbjct: 135 VA 136

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPA-SIM 61
            + TI       GL  L  L L G  + +        L+SL+ L   E    SL +  I 
Sbjct: 67  EIETIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL-----SLKWLDASNCKRLQSLPE 103
           QL  L  L ++  N + S    +      +L  +D S    +Q++  
Sbjct: 126 QLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITV 170

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 14/127 (11%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-----GCLSSLKELDICENNFESLPA 58
            + +       S L++L  +DL    +  I                 LD+  N  + +  
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 59  SIMQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
              Q  +L  L L       ++ +  L     L        +          +LE  + S
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE-----RNLEIFEPS 253

Query: 115 VFEKLSK 121
           + E L  
Sbjct: 254 IMEGLCD 260

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGL---TAIPQEIGCLSSLKELDICENNFESLP 57
             R+L     SI+  GL  +   + R       +    +  CL+++  + +   + + L 
Sbjct: 243 DERNLEIFEPSIME-GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301

Query: 58  ASIMQLSRLTYLYLSKCNMLLSLPELSLS-LKWLDASNCKRLQSLPEIP-SSLEEVD 112
             + +  +   L + +C  L   P L L  LK L  +  K   S  ++   SL  +D
Sbjct: 302 -DVPKHFKWQSLSIIRCQ-LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 11  SILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA---SIMQLSRLT 67
              +  L  L  L L     + I  +   L SL  LD+  N          S +  + L 
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 68  YLYLSKCNMLLSLPEL---SLSLKWLDASNCKRLQSLPEI 104
           +L LS  N  + +         L+ LD  +   L+ + E 
Sbjct: 380 HLDLS-FNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEF 417

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           LV I     S GL+SL++L L  C LT+IP E    L  L  L +   N  ++     + 
Sbjct: 140 LVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 63  LSRLTYLYLSKCNMLLSLPELS---LSLKWLDASNCKRLQSLPE 103
           L RL  L +S    L ++       L+L  L  ++C  L ++P 
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           +  +     +  L +L  L LR   L  IP  +   LS+L +LDI EN    L   + Q 
Sbjct: 68  VSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           L  L  L +   N L+ +   +     SL+ L    C  L S+P 
Sbjct: 127 LYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPT 169

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS 59
               L T+  + L     +L  L +  C LTA+P   +  L  L+ L++  N   ++  S
Sbjct: 209 HWPYLDTMTPNCLY--GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 60  IMQ-LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           ++  L RL  + L     L  +   +      L+ L+ S  + L +L E
Sbjct: 267 MLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM 61
           +  V +P  I +        LDL    +  + Q+       L+EL++ EN   ++     
Sbjct: 21  KRFVAVPEGIPTE----TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 62  Q-LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
             L  L  L L   N L  +P        +L  LD S   ++  L +
Sbjct: 77  NNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISEN-KIVILLD 121

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           + TI  S+L   L  L  + L G  L  +       L+ L+ L++  N   +L  S+   
Sbjct: 260 ISTIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 63  LSRLTYLYLSK------CNML 77
           +  L  L L        C +L
Sbjct: 319 VGNLETLILDSNPLACDCRLL 339

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 23  LDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLP 81
           +        A+P+ I   +  + LD+ +N  ++L          L  L L++ N++ ++ 
Sbjct: 16  VLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVE 72

Query: 82  ELSL----SLKWLDASNCKRLQSLPE 103
             +     +L+ L   +  RL+ +P 
Sbjct: 73  PGAFNNLFNLRTLGLRSN-RLKLIPL 97

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 23/135 (17%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-L 63
           +  I     +  L  L+RL L    L  +P+      +L+EL + EN    +  S+   L
Sbjct: 88  ISKISPGAFA-PLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGL 144

Query: 64  SRLTYLYLSKCNMLLS--LPELSL----SLKWLDASNCKRLQSLPE-IPSSLEE------ 110
           +++  + L   N L S  +   +      L ++  ++   + ++P+ +P SL E      
Sbjct: 145 NQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGN 202

Query: 111 ----VDASVFEKLSK 121
               VDA+  + L+ 
Sbjct: 203 KITKVDAASLKGLNN 217

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ- 62
               I       G+  L  + +    +T IPQ  G   SL EL +  N    + A+ ++ 
Sbjct: 158 KSSGIENGAFQ-GMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKG 214

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           L+ L  L LS  N + ++   SL     L+ L  +N K L  +P 
Sbjct: 215 LNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNK-LVKVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 19  SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNML 77
            L  +     GL  +P+++        LD+  N    +     + L  L  L L   N +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKI 88

Query: 78  LSLPELSL----SLKWLD-ASNCKRLQSLP-EIPSSLEEVD 112
             +   +      L+ L  + N  +L+ LP ++P +L+E+ 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKN--QLKELPEKMPKTLQELR 127

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM-- 61
           S+  +    L+     L  L L    L  +P  +     ++ + +  NN  ++ ++    
Sbjct: 227 SISAVDNGSLA-NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 62  -----QLSRLTYLYLS 72
                + +  + + L 
Sbjct: 286 PGYNTKKASYSGVSLF 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           +  I     + GL+SL+ L+L    LT IP      LS L+EL +  N  ES+P+     
Sbjct: 111 IRQIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP--SSLEEVD 112
           +  L  L L +   L  + E +     +LK+L+   C  ++ +P +     LEE++
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELE 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-S 59
             + L  I       GL +L  L+L  C +  +P  +  L  L+EL++  N+F  +   S
Sbjct: 180 ELKKLEYISEGAFE-GLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGS 237

Query: 60  IMQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
              LS L  L++   + +  +   +     SL  L+ ++   L SLP 
Sbjct: 238 FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           +  I A      L  L+ L L    +  I       L+SL  L++ +N    +P+   + 
Sbjct: 87  IQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           LS+L  L+L   N + S+P  +     SL  LD    K+L+ + E
Sbjct: 146 LSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPASIMQ- 62
              I       GLSSL +L +    ++ I +     L+SL EL++  NN  SLP  +   
Sbjct: 230 FPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 63  LSRLTYLYLSK------CNML 77
           L  L  L+L        C++L
Sbjct: 289 LRYLVELHLHHNPWNCDCDIL 309

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 18  SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNM 76
           +   ++     GL+ +PQ I   S+ + L++ ENN + + A   + L  L  L L + N 
Sbjct: 54  NQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NS 110

Query: 77  LLSLPELSL----SLKWLDASNCKRLQSLPE 103
           +  +   +     SL  L+  +   L  +P 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDN-WLTVIPS 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 11  SILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLY 70
           +I    L++L  LD     +T +   I  L+ L +L    NN  +L  S  Q + LTYL 
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLDLS--QNTNLTYLA 91

Query: 71  LSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPE-IPSSLEEVDAS 114
               N L +L    L  L +L+    K L  L       L  ++ +
Sbjct: 92  CDS-NKLTNLDVTPLTKLTYLNCDTNK-LTKLDVSQNPLLTYLNCA 135

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           +    L  LD     LT I   +  L+ L   D   N    L  S   LS+LT L+  + 
Sbjct: 209 NQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQ- 263

Query: 75  NMLLSLPELSL-SLKWLDASNCKRLQSLP-EIPSSLEEVDAS 114
             LL +       L +  A  C++++ L     + L  +D  
Sbjct: 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 8/112 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           +  + L  LD +  G+T +   +     L  L +       L  S    ++L  L     
Sbjct: 294 THNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELDVS--HNTKLKSLSCVN- 348

Query: 75  NMLLSLPELSL--SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSH 124
             +     +    +L     +  +   ++P+   +   +  +V   L     
Sbjct: 349 AHIQDFSSVGKIPALNNNFEAEGQ-TITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           +  + L  LD     +T +   +     L  L+   NN   L  +  Q  +LT+L  S  
Sbjct: 167 TPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLN--QNIQLTFLDCSS- 221

Query: 75  NMLLSLPELSL-SLKWLDASNCKRLQSLPE-IPSSLEEVDAS 114
           N L  +    L  L + D S    L  L     S L  +   
Sbjct: 222 NKLTEIDVTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCI 262

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L+ L  L+     LT +   +     L  L+   N    +  S    ++LT L     
Sbjct: 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVS--HNTQLTELDCHLN 158

Query: 75  NMLLSLPELSL-SLKWLDASNCKRLQSLP-EIPSSLEEVDAS 114
             +  L       L  LD S  K +  L       L  ++  
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCD 199

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           +  + L      GC       ++   + L  LD        L  S  Q  +L YLYL+  
Sbjct: 272 THNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLDCQAAGITELDLS--QNPKLVYLYLNN- 327

Query: 75  NMLLSLPELSL-SLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
             L  L       LK L   N   +Q    +    +L     +
Sbjct: 328 TELTELDVSHNTKLKSLSCVNAH-IQDFSSVGKIPALNNNFEA 369

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           S  + L  LD           ++   + L  LD   N    L  S  Q   L  L     
Sbjct: 145 SHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVS--QNKLLNRLNCDT- 200

Query: 75  NMLLSLPELSL-SLKWLDASNCKRLQSLPEIP-SSLEEVDAS 114
           N +  L       L +LD S+ K L  +   P + L   D S
Sbjct: 201 NNITKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCS 241

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLS 64
           L  +  S      + L  L      +      +G + +L      E    ++P   +  +
Sbjct: 330 LTELDVS----HNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNN 384

Query: 65  RLTYLYLSK 73
            LT      
Sbjct: 385 SLTIAVSPD 393

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 22/134 (16%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-L 63
           +  I     S  L  L +L +    L  IP  +   SSL EL I +N    +P  +   L
Sbjct: 90  ISKIHEKAFS-PLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGL 146

Query: 64  SRLTYLYLSKCNML--LSLPE---LSLSLKWLDASNCKRLQSLP-EIPSSLEE------- 110
             +  + +   N L            L L +L  S   +L  +P ++P +L E       
Sbjct: 147 RNMNCIEMGG-NPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLPETLNELHLDHNK 204

Query: 111 ---VDASVFEKLSK 121
              ++     + SK
Sbjct: 205 IQAIELEDLLRYSK 218

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ 62
            +  I    L    S L RL L    +  I       L +L+EL +  N    +PA +  
Sbjct: 204 KIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262

Query: 63  LSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQ--SLPEIPSSLEEVDASVFEKLS 120
           L  L  +YL   N +  +                     SL   P    EV  + F  ++
Sbjct: 263 LKLLQVVYLHT-NNITKVGVNDFCPV-GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 121 K 121
            
Sbjct: 321 D 321

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 19  SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNML 77
            L  +     GL A+P+EI        LD+  N+   L       L  L  L L   N +
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLV-NNKI 90

Query: 78  LSLPELSL----SLKWLDASNCKRLQSLP-EIPSSLEEVD 112
             + E +      L+ L  S    L  +P  +PSSL E+ 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPSSLVELR 129

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ 62
            +  I  S L     +L  L L   G+  I ++    L SL+ LD+  N   +L +S  +
Sbjct: 63  RITYISNSDLQ-RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121

Query: 63  -LSRLTYLYLSKCNMLLSLPELSL-----SLKWLDASNCKRLQSLPE 103
            LS LT+L L   N   +L E SL      L+ L   N      +  
Sbjct: 122 PLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPAS 59
              +   I     + GL+ L+ L++    L +   +    + ++  L +       L   
Sbjct: 158 NMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 60  IMQ-LSRLTYLYLSKCNMLLSLPELSLS 86
            +   S +  L L     L +     LS
Sbjct: 217 FVDVTSSVECLELR-DTDLDTFHFSELS 243

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 26/177 (14%)

Query: 4   SLVTIPASILSS-GLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ 62
           SL    +S  +S               L +IP  +    ++K LD+  N    +  S +Q
Sbjct: 16  SLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQ 73

Query: 63  -LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFE 117
               L  L L+  N + ++ E S     SL+ LD S    L +L           +S F+
Sbjct: 74  RCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYN-YLSNLS----------SSWFK 121

Query: 118 KLSK--HSHYDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLR 172
            LS     +   N    +  +  F     +++    N         +IQ    A L 
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----KIQRKDFAGLT 174

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSK 73
               +   + +    L  + + +  +S L EL+   N  +S+P  I   L+ L  ++L  
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 74  ------CNMLLSLPELSLSLKWLDASNCKRLQS 100
                 C  +  L        WL+ ++ K   S
Sbjct: 311 NPWDCSCPRIDYLSR------WLNKNSQKEQGS 337

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 2   CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCL-SSLKELDICENNFESLPASI 60
             SL +       +   S+  L+L    LT       CL   +K LD+  N   S+P  +
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIMSIPKDV 469

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASN 94
             L  L  L ++  N L S+P+       SL+++   +
Sbjct: 470 THLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASI- 60
           R+L  +P  +          L L    ++ +   +I  LS L+ L +  N   SL   + 
Sbjct: 41  RNLTHVPKDLPPR----TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPEIP-----SSLEE---- 110
           +    L YL +S  N L ++    + SL+ LD S       LP        + L      
Sbjct: 97  LFNQDLEYLDVS-HNRLQNISCCPMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 111 ------VDASVFEKLSKHSHYDENERAYVSSSIE--FWFTNSMKLDDEANNKNLADSQLR 162
                 +D      L       +    ++           N+  L    +  +L   Q+ 
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 163 IQHMAIASLRLFS 175
           +   A+  L+L +
Sbjct: 215 MSVNALGHLQLSN 227

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 31/128 (24%)

Query: 6   VTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQLS 64
                 +     SS   L+      T    Q    L  L+ L +  N  ++     +   
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 65  RLTYLYL--------------SKCNMLLSLPELSLS---------------LKWLDASNC 95
            ++ L                  C    S+  L+LS               +K LD  N 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460

Query: 96  KRLQSLPE 103
           + + S+P+
Sbjct: 461 R-IMSIPK 467

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 6e-10
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCL-SSLKELDICENNFESLPASIMQ 62
           S+         S   SL  L++    LT       CL   +K LD+  N  +S+P  +++
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNKIKSIPKQVVK 442

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASN 94
           L  L  L ++  N L S+P+       SL+ +    
Sbjct: 443 LEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASI- 60
             L+ +P  +          L++    ++ +   +I  LS L+ L I  N  + L  S+ 
Sbjct: 10  NGLIHVPKDLSQK----TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF 65

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKL 119
                L YL LS  N L+ +      +LK LD S      +LP             F  +
Sbjct: 66  KFNQELEYLDLSH-NKLVKISCHPTVNLKHLDLSFNA-FDALPI---------CKEFGNM 114

Query: 120 SK 121
           S+
Sbjct: 115 SQ 116

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 31/119 (26%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASI---MQLSRLTYLY 70
           S +S    LD     LT    E  G L+ L+ L +  N  + L        Q+  L  L 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 71  LSK-----------CNMLLSLPELSLS---------------LKWLDASNCKRLQSLPE 103
           +S+           C+   SL  L++S               +K LD  + K ++S+P+
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPK 438

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP--ASIMQ 62
           +  +  S+       L+ LDL    L  I        +LK LD+  N F++LP       
Sbjct: 57  IQYLDISVFKF-NQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGN 113

Query: 63  LSRLTYLYLSKCNM----LLSLPELSLSLKWLDASNCKRLQSLPEIPSSL 108
           +S+L +L LS  ++    +L +  L++S   L        +  PE     
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK 73
             L  L+ L L  C L++I Q     L  +  +D+  N   S     +   +  YL L+ 
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532

Query: 74  CNMLLSLPELSL----SLKWLDASN 94
            N +  +    L      + ++   
Sbjct: 533 -NHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 4   SLVTIPASILSS-GLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM 61
               I  ++       S++ ++L+      I      C S L+ELD+   +   LP+ ++
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
            LS L  L LS  N   +L ++S     SL  L      +   L  
Sbjct: 299 GLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESL----PA 58
            L    A      L  L  L+L    L    +++   L +L+ L++  N+F         
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 59  SIMQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           S+  L RL  L LS C+ L S+ + +      +  +D S+  RL S   
Sbjct: 471 SLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 16/120 (13%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESL-PASI 60
             L  IP ++ +S     + L+     L  I       L +L  LD+       +   + 
Sbjct: 22  LGLNEIPGTLPNS----TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVD 112
               RL  L L+  N L+ + E +L    +LK L       + S+  IP     +LE + 
Sbjct: 78  QSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLY 135

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPASIMQ- 62
           L TI  +  S  L +L  LDL  C +  I ++       L  L +  N    +  + +  
Sbjct: 45  LPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP----SSLEEVD 112
              L +L+  +   + S+  + L    +L+ L   +   + S+          L+ +D
Sbjct: 104 PKALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLD 159

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 23  LDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP 81
            +    GL  IP  +   +S + L+   N   ++   +  +L  LT+L L++   +  + 
Sbjct: 17  YNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR-CQIYWIH 73

Query: 82  ELSL----SLKWLDASNCKRLQSLPEI----PSSLEEVDAS 114
           E +      L  L  +    L  + E     P +L+ +   
Sbjct: 74  EDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFI 113

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI---GCLSSLKELDICENNFESLP 57
           G ++L+ I   + +S + SL            I   +    C  S++ +++ ++ F ++ 
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 58  ASIMQ-LSRLTYLYLSKCNMLLSLPE----LSLSLKWLDASNCKRLQSLPE 103
           ++     S L  L L+    L  LP     LS +LK L  S   + ++L +
Sbjct: 271 SNTFHCFSGLQELDLTA-THLSELPSGLVGLS-TLKKLVLSAN-KFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 10/123 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLK--ELDICENNFESLPASI 60
            + +I           L  LD +   +  +  +++  L       L++  N+   +    
Sbjct: 140 HISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLS 120
              +    L       LL + +       L  S  + L          E++  +VFE L 
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFK------GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 121 KHS 123
           + S
Sbjct: 253 EMS 255

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTA--IPQEIGCLSSLKELDICENNFESLPASIM 61
               +     S    SL  L ++G           +  L +L+ELD+  ++ E+     +
Sbjct: 312 KFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 62  Q---LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLP 102
           Q   LS L  L LS  N  LSL   +      L+ LD +   RL+   
Sbjct: 371 QLRNLSHLQSLNLSY-NEPLSLKTEAFKECPQLELLDLAFT-RLKVKD 416

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCL----SSLKELDICENNFESLPAS 59
               + +++      +L  L LR  G+         L      L+ LD+  N+      +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 60  IMQ--LSRLTYLYLSKCNMLLSLPE-LSLSLKWLDASNCKRLQSLPEI 104
                 S+L  L LS    L  +P+ L   L  LD S   RL   P  
Sbjct: 247 PSCDWPSQLNSLNLS-FTGLKQVPKGLPAKLSVLDLSYN-RLDRNPSP 292

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
           SL     +      S L+ L+L   GL  +P+ +   + L  LD+  N  +  P S  +L
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNP-SPDEL 295

Query: 64  SRLTYLYLS 72
            ++  L L 
Sbjct: 296 PQVGNLSLK 304

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE------IGCLSSLKELDICENNFESLP 57
              +       S   SL++L L    L    +          LS L+ L +  N   SLP
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496

Query: 58  ASIMQ-LSRLTYLYLSKCNMLLSLPELSL--SLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
             +   L+ L  L L+  N L  L    L  +L+ LD S  + L   P++  SL  +D +
Sbjct: 497 PGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ 62
            +  I       GL +L  L+L    L  +       L  +  +D+ +N+   +     +
Sbjct: 301 KINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 63  -LSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
            L +L  L L   N L ++  +  S+  +  S  K L +LP+I  +   +  S
Sbjct: 360 FLEKLQTLDLRD-NALTTIHFIP-SIPDIFLSGNK-LVTLPKINLTANLIHLS 409

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK 73
            GLS L  L L    L ++P  +   L++L+ L +  N    L  + +  + L  L +S+
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISR 535

Query: 74  CNMLLSLPELSL-SLKWLDASN 94
            N LL+       SL  LD ++
Sbjct: 536 -NQLLAPNPDVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 23  LDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLP 81
              R C LT +PQ    L++ + L +  N   ++ AS    L +L  L L      L++ 
Sbjct: 9   AFYRFCNLTQVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 82  ELSL----SLKWLDASNCKRLQSLPE 103
           + +     +L+ LD  +  ++  L  
Sbjct: 66  KEAFRNLPNLRILDLGSS-KIYFLHP 90

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 14/113 (12%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESL--PAS 59
            +L  +P       L++ +RL L    +  +       L  L+ L++            +
Sbjct: 14  CNLTQVP-----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 60  IMQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSL 108
              L  L  L L   + +  L   +      L  L    C  L          
Sbjct: 69  FRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYF 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE---IGCLSSLKELDICENNFESLP--A 58
            +  +       GL  L  L L  CGL+    +      L +L  LD+ +N   SL    
Sbjct: 84  KIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 59  SIMQLSRLTYLYLSKCNMLLSLPELSL------SLKWLDASNCKRLQSLPE 103
           S  +L+ L  +  S  N +  + E  L      +L +   +    L S   
Sbjct: 143 SFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLAAN-SLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQL 63
            +  I        L  L  LDLR   LT I      + S+ ++ +  N   +LP   +  
Sbjct: 349 HIAIIQDQTFK-FLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLT- 402

Query: 64  SRLTYLYLSKCNMLLSLPELSL-----SLKWLDASNCKRLQSLPEI-----PSSLEEVDA 113
                ++LS+ N L +L  L        L+ L  +   R  S           SLE++  
Sbjct: 403 --ANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFL 458

Query: 114 S 114
            
Sbjct: 459 G 459

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 15/134 (11%), Positives = 42/134 (31%), Gaps = 14/134 (10%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI---GCLSSLKELDICENNFESLPA-- 58
            + ++        L+SL  +D     +  + +         +L    +  N+  S  +  
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 59  -----SIMQLSRLTYLYLSKCNMLLSLPELSL-SLKWLDASNCKRLQSLPEIPSS---LE 109
                +  +   L  L +S     + +      ++    A +      +         ++
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 110 EVDASVFEKLSKHS 123
           + D + F  L++ S
Sbjct: 254 DPDQNTFAGLARSS 267

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 20/115 (17%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEI---GCLSSLKELDICENNFESLPASIMQ-LSRLTYLY 70
                +         +    Q        SS++ LD+      SL + + + L  L  L 
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 71  LSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
           L+  N +  + + +     +L+ L+ S              L E+ +S F  L K
Sbjct: 297 LAY-NKINKIADEAFYGLDNLQVLNLSYNL-----------LGELYSSNFYGLPK 339

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 35/134 (26%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGC--LSSLKELDICENN-------- 52
           R+L  I    L   L  L  L +   GL   P             L+I +N         
Sbjct: 91  RNLTYIDPDALK-ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 53  ------------------FESLPASIMQLSRLTYLYLSKCNMLLSLPE-----LSLSLKW 89
                             F S+       ++L  +YL+K   L  + +     +      
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 90  LDASNCKRLQSLPE 103
           LD S    + +LP 
Sbjct: 210 LDVSQT-SVTALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 2   CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENN-FESLPAS 59
           C+ +  IP     S   S   L L    L  IP      L ++  + +  +   + L + 
Sbjct: 20  CKDIQRIP-----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH 74

Query: 60  I-MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
               LS++T++ +     L  +   +L     LK+L   N   L+  P+
Sbjct: 75  SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD 122

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 18/109 (16%)

Query: 18  SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNM 76
              +   +    +  IP       S + L + E +  ++P+     L  ++ +Y+S    
Sbjct: 11  HQEEDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 77  LLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
           L  L   S      +  ++  N + L  +               ++L  
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYID----------PDALKELPL 106

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           +GLS+L  L L    +T I   +  L++L+ L I       L   +  LS+LT L     
Sbjct: 126 AGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD- 182

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N +  +  L+   +L  +   N + +  +  +   S+L  V  +
Sbjct: 183 NKISDISPLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L  +  L   G G+T I   +  L++L  L++ +N    L   +  L+++T L LS  
Sbjct: 38  ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG- 94

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N L ++  ++   S+K LD ++ + +  +  +   S+L+ +   
Sbjct: 95  NPLKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLD 137

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             L+ +  L+L G  L  +   I  L S+K LD+       +   +  LS L  LYL   
Sbjct: 82  KNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL- 138

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIP--SSLEEVDAS 114
           N + ++  L+   +L++L   N + +  L  +   S L  + A 
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKAD 181

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             L++  ++      +T        L  +  L        ++   +  L+ L  L L   
Sbjct: 16  PALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKD- 72

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIPS--SLEEVDAS 114
           N +  L  L     +  L+ S    L+++  I    S++ +D +
Sbjct: 73  NQITDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLT 115

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + LS L  L      ++ I   +  L +L E+ +  N    +   +   S L  + L+  
Sbjct: 170 ANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN- 226

Query: 75  NMLLSLPELSLS 86
             + + P    +
Sbjct: 227 QTITNQPVFYNN 238

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 18/127 (14%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ 62
               + A+ +   L  L +++     +T I +      S + E+ +  N  E++   + +
Sbjct: 43  EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK 102

Query: 63  -LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFE 117
            L  L  L L   N +  +   S     S++ L   +  ++ ++              F+
Sbjct: 103 GLESLKTLMLR-SNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAP----------GAFD 150

Query: 118 KLSKHSH 124
            L   S 
Sbjct: 151 TLHSLST 157

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 19/123 (15%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           L ++  +    GL  L  L L  CGL  +   +   L++L+ L + +N  ++LP    + 
Sbjct: 93  LRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 63  LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEK 118
           L  LT+L+L   N + S+PE +     SL  L     +           +  V    F  
Sbjct: 152 LGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNR-----------VAHVHPHAFRD 199

Query: 119 LSK 121
           L +
Sbjct: 200 LGR 202

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASI- 60
           + L  +P  I ++      R+ L G  ++ +P        +L  L +  N    + A+  
Sbjct: 21  QGLQAVPVGIPAA----SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
             L+ L  L LS    L S+   +      L  L    C  LQ L  
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGP 122

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           + ++P      GL SLDRL L    +  +       L  L  L +  NN  +LP   +  
Sbjct: 165 ISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 63  LSRLTYLYLSK------CNML 77
           L  L YL L+       C   
Sbjct: 224 LRALQYLRLNDNPWVCDCRAR 244

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENN-FESLPASIMQ 62
           +  +PA+       +L  L L    L  I       L+ L++LD+ +N    S+  +   
Sbjct: 44  ISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 63  -LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
            L RL  L+L +   L  L         +L++L   +   LQ+LP+
Sbjct: 103 GLGRLHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDN-ALQALPD 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 18/104 (17%)

Query: 23  LDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLSLP 81
                 GL A+P  I   ++ + + +  N    +PA+  +    LT L+L   N+L  + 
Sbjct: 16  TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARID 72

Query: 82  ELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
             +      L+ LD S+  +L+S+            + F  L +
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVD----------PATFHGLGR 106

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 8e-09
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             L  L+ L L    +T I   +  L+ L  L + +N    +   +  L++L  LYLSK 
Sbjct: 128 VHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSK- 184

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPE------IPSSLEEVDASVFE--KLSKHSH 124
           N +  L  L+   +L  L+  + + L           +P++++  D S+     +S    
Sbjct: 185 NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244

Query: 125 YDENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQ 160
           Y++    +         +                  
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L +L  L L    +  +   +  L  LK L +  N    +   ++ L +L  LYL   
Sbjct: 84  TNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN- 140

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIPS--SLEEVDAS 114
           N +  +  LS    L  L   + + +  +  +     L+ +  S
Sbjct: 141 NKITDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLS 183

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 7e-08
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             +   + +L+   +T        L+S+ ++    ++ +S+   I  L  +T L+L+  
Sbjct: 18 DAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNG- 74

Query: 75 NMLLSLPELS--LSLKWLDASNCK 96
          N L  +  L+   +L WL     K
Sbjct: 75 NKLTDIKPLTNLKNLGWLFLDENK 98

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 25/169 (14%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASI-MQLSRLTYLYLS 72
                L  LDL  C +  I       LS L  L +  N  +SL       LS L  L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 73  KCNMLLSLPELSL----SLKWLD-ASNCKRLQSLPEIPSSLEEVDASVFEKLS--KHSHY 125
           + N L SL    +    +LK L+ A N   +QS               F  L+  +H   
Sbjct: 109 ETN-LASLENFPIGHLKTLKELNVAHN--LIQSFKL---------PEYFSNLTNLEHLDL 156

Query: 126 DENERAYVSSSIEFWFTNSMKLDDEANNKNLADSQLR-IQHMAIASLRL 173
             N+   +  +         ++     + +L+ + +  IQ  A   +RL
Sbjct: 157 SSNKIQSIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 22/126 (17%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM-- 61
           + ++     S GLSSL +L      L ++     G L +LKEL++  N  +S        
Sbjct: 88  IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 62  QLSRLTYLYLSKC-------NMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
            L+ L +L LS           L  L ++ L    LD S    +  +             
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQ----------PG 195

Query: 115 VFEKLS 120
            F+++ 
Sbjct: 196 AFKEIR 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEI-GCLSSLK----ELDICENNFESLPASIMQLSRLTYL 69
           S L++L+ LDL    + +I       L  +      LD+  N    +     +  RL  L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205

Query: 70  YLSKCNMLLSLPELSL----SLKWLDASN 94
            L   N L S+P+       SL+ +    
Sbjct: 206 ALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 20/113 (17%)

Query: 16  GLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM-QLSRLTYLYLSK 73
            L++L  L L G  L ++P  +   L++LKEL + EN  +SLP  +  +L+ LTYL L+ 
Sbjct: 83  ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

Query: 74  CNMLLSLPE-----LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
            N L SLP+     L+ +L  LD S  + LQSLP            VF+KL++
Sbjct: 143 -NQLQSLPKGVFDKLT-NLTELDLSYNQ-LQSLP----------EGVFDKLTQ 182

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM 61
             L ++P  +    L++L  L+L    L ++P+ +   L++L ELD+  N  +SLP  + 
Sbjct: 119 NQLQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177

Query: 62  -QLSRLTYLYLSKCNMLLSLPE 82
            +L++L  L L + N L S+P+
Sbjct: 178 DKLTQLKDLRLYQ-NQLKSVPD 198

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM 61
             +  +  S+ S   + L++L L    +  I       L+ L +L++ +N   S+ + + 
Sbjct: 285 SKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 62  Q-LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
           + L +L  L LS  N + +L + S     +LK L     + L+S+P+
Sbjct: 344 ENLDKLEVLDLS-YNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 18  SSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASI-MQLSRLTYLYLSKCN 75
           S +   DL    + A+ + +    + L++L + +N    +  +    L+ L  L LS+ N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-N 333

Query: 76  MLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
            L S+          L+ LD S    +++L              F  L  
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNH-IRALG----------DQSFLGLPN 372

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ- 62
           L +I + +    L  L+ LDL    + A+  +    L +LKEL +  N  +S+P  I   
Sbjct: 335 LGSIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

Query: 63  LSRLTYLYLSK------CNMLLSLPE 82
           L+ L  ++L        C  +  L  
Sbjct: 394 LTSLQKIWLHTNPWDCSCPRIDYLSR 419

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 19/106 (17%)

Query: 21  DRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNMLLS 79
                   GL  +P E+   + +  +D+  N+   L  +    L  L +L + +    L 
Sbjct: 13  YNAICINRGLHQVP-EL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV 69

Query: 80  LPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
           +   +     SL  L     +    L              F  L+ 
Sbjct: 70  IRNNTFRGLSSLIILKLDYNQ-FLQLE----------TGAFNGLAN 104

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 19/126 (15%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGC--LSSLKELDICENNFESLPASIM 61
           S+  +  +  S  L  L  L +       + +      LSSL  L +  N F  L     
Sbjct: 41  SIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99

Query: 62  Q-LSRLTYLYLSKCNM-LLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASV 115
             L+ L  L L++CN+    L         SL+ L   +   ++ +           AS 
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQ---------PASF 149

Query: 116 FEKLSK 121
           F  + +
Sbjct: 150 FLNMRR 155

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 6   VTIPASILSSGLSSLDRLDLRGCGLTAIPQEI--GCLSSLKELDICENNFESLPASI--- 60
             +  +     L+SL+ L LR   +  I        +     LD+  N  +S+       
Sbjct: 118 AVLSGNFFK-PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176

Query: 61  MQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEI 104
            Q    T L L     L  + E  L   W    N  +  S+  +
Sbjct: 177 FQGKHFTLLRL-SSITLQDMNEYWLG--WEKCGNPFKNTSITTL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 45/253 (17%), Positives = 89/253 (35%), Gaps = 49/253 (19%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNF-ESLPASI 60
             +  IP+ +  +       L      L  I +        L++++I +N+  E + A +
Sbjct: 19  SKVTEIPSDLPRN----AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 61  -MQLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIP---------- 105
              L +L  + + K N LL +   +     +L++L  SN   ++ LP++           
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLL 133

Query: 106 -----SSLEEVDASVFEKLSKHSHY---DENERAYVSSSIEFWFTNSMKLDDEANNK--- 154
                 ++  ++ + F  LS  S     ++N    + +S  F  T   +L+   NN    
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEE 192

Query: 155 -------NLADSQ-LRIQHMAIASL--RLFSELAEPCILKGPIIVLPGSEIPEWFSNQSS 204
                    +    L I    I SL       L +        +     ++P       +
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKLP-TLEKLVA 247

Query: 205 GSQITLQLPQHCC 217
             + +L  P HCC
Sbjct: 248 LMEASLTYPSHCC 260

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 17/108 (15%)

Query: 19  SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQ-LSRLTYLYLSKCNML 77
           S      +   +T IP ++    +  EL         +          L  + +S+ ++L
Sbjct: 10  SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 78  LSLPELSLS----LKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
             +     S    L  +       L  +              F+ L  
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYIN----------PEAFQNLPN 105

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 26/134 (19%), Positives = 39/134 (29%), Gaps = 33/134 (24%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI----------------------- 37
              +L+ I        L +L  L +   G+  +P                          
Sbjct: 88  KANNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 38  ----GCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLS----LKW 89
               G       L + +N  + +  S    ++L  L LS  N L  LP            
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 90  LDASNCKRLQSLPE 103
           LD S   R+ SLP 
Sbjct: 207 LDISRT-RIHSLPS 219

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQ 62
           ++  IP    S     L R+DL    ++ +  +    L SL  L +  N    LP S+ +
Sbjct: 43  TIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101

Query: 63  -LSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPE 103
            L  L  L L+  N +  L   +     +L  L   +  +LQ++ +
Sbjct: 102 GLFSLQLLLLN-ANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAK 145

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 21/127 (16%)

Query: 3   RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIM- 61
           + L  +P  I       +  L L G   T +P+E+     L  +D+  N   +L      
Sbjct: 20  KGLKVLPKGIPRD----VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 62  QLSRLTYLYLSKCNMLLSLPELSL----SLKWLDASNCKRLQSLPEIPSSLEEVDASVFE 117
            +++L  L LS  N L  +P  +     SL+ L       +  +PE            F 
Sbjct: 76  NMTQLLTLILS-YNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPE----------GAFN 123

Query: 118 KLSKHSH 124
            LS  SH
Sbjct: 124 DLSALSH 130

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
             L  L+ L L    +T I   +  L+ L  L + +N    +   +  L++L  LYLSK 
Sbjct: 131 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSK- 187

Query: 75  NMLLSLPELS--LSLKWLDASNCK------RLQSLPEIPSSLEEVDASV--FEKLSKHSH 124
           N +  L  L+   +L  L+  + +        QS   +P++++  D S+   E +S    
Sbjct: 188 NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 247

Query: 125 YDENE 129
           Y++  
Sbjct: 248 YEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 5   LVTIPASILS----SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASI 60
            +T+P  I         +   + +L+   +T        L+S+ ++    ++ +S+   I
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-I 64

Query: 61  MQLSRLTYLYLSKCNMLLSLPELS--LSLKWLDASNCK 96
             L  +T L+L+  N L  +  L+   +L WL     K
Sbjct: 65  QYLPNVTKLFLNG-NKLTDIKPLANLKNLGWLFLDENK 101

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           + L +L  L L    +  +   +  L  LK L +  N    +   ++ L +L  LYL   
Sbjct: 87  ANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN- 143

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIPS--SLEEVDAS 114
           N +  +  LS    L  L   + + +  +  +     L+ +  S
Sbjct: 144 NKITDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLS 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 15  SGLSSLDRLDLRGCGLT-AIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK 73
           SGL+SL  LD+       +I  +I  L  +  +D+  N   +    +  L  L  L +  
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

Query: 74  CNM--LLSLPELSLSLKWLDASNCK 96
             +     + +    L  L A +  
Sbjct: 169 DGVHDYRGIEDFP-KLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSK 73
               ++  L +     T     I  LS+L+ L I   +  S     +  L+ LT L +S 
Sbjct: 63  EYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 74  CNM-LLSLPELS--LSLKWLDASNCKRLQSLPEIPS--SLEEVDAS 114
                  L +++    +  +D S    +  +  + +   L+ ++  
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ 167

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 16  GLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM-QLSRLTYLYLSK 73
            L+SL +L L G  L ++P  +   L+SL  L++  N  +SLP  +  +L++L  L L+ 
Sbjct: 50  ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN- 108

Query: 74  CNMLLSLPE-----LSLSLKWLDASNCKRLQSLPE 103
            N L SLP+     L+  LK L      +L+S+P+
Sbjct: 109 TNQLQSLPDGVFDKLT-QLKDLRLYQ-NQLKSVPD 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
            GL++  + +L    +T +      LS ++  +   +N +SL   +   + L  L+LS  
Sbjct: 16  PGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSH- 72

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEIPS-SLEEVDAS 114
           N +  L  L     L+ L  +  + L++L  IPS  L  +   
Sbjct: 73  NQISDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLD 114

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
            + L RL L    L      +  L +L+ L I  N  +S+   +  LS+L  L L   N 
Sbjct: 105 SACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NE 161

Query: 77  LLSLPELS--LSLKWLDASNCK 96
           + +   L+    + W+D +  K
Sbjct: 162 ITNTGGLTRLKKVNWIDLTGQK 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 38/206 (18%), Positives = 80/206 (38%), Gaps = 56/206 (27%)

Query: 1   GCRSLVT-----IPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKEL--DICENNF 53
            C+ L+T     +    LS+  ++   LD     LT  P E      +K L     +   
Sbjct: 265 SCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLT--PDE------VKSLLLKYLDCRP 315

Query: 54  ESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLK--------WLDASNCKRLQSLPEIP 105
           + LP  ++  +             LS+  ++ S++        W    NC +L ++  I 
Sbjct: 316 QDLPREVLTTNPR----------RLSI--IAESIRDGLATWDNWKH-VNCDKLTTI--IE 360

Query: 106 SSLEEVDASVFEKLSKHSHYDE----NERAYVSSSI--EFW----FTNSMKLDDEANNKN 155
           SSL  ++ + + K+     +D        A++ + +    W     ++ M + ++ +  +
Sbjct: 361 SSLNVLEPAEYRKM-----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 156 LADSQLRIQHMAIASLRLFSELAEPC 181
           L + Q +   ++I S+ L  EL    
Sbjct: 416 LVEKQPKESTISIPSIYL--ELKVKL 439

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 8e-06
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 1   GCRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPAS 59
             + L  +    L  GL  L  L +   GL  +  +       L  L++  N  ESL   
Sbjct: 40  NQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98

Query: 60  IMQLSRLTYLYLS 72
            +Q   L  L LS
Sbjct: 99  TVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 29  GLTAIPQEIGCLSSLKELDICENN-FESLPASIMQ-LSRLTYLYLSKCNMLLSLPELSL- 85
           G       +    +L EL I      + L    ++ L  L  L + K + L  +   +  
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFH 77

Query: 86  ---SLKWLDASNCKRLQSLPE 103
               L  L+ S    L+SL  
Sbjct: 78  FTPRLSRLNLSFN-ALESLSW 97

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 16  GLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM-QLSRLTYLYLSK 73
            L +L  L L    L A+P  +   L+ L  LD+  N    LP+++  +L  L  L++  
Sbjct: 62  SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC- 120

Query: 74  CNMLLSLPE---LSLSLKWLDASNCKRLQSLPE 103
           CN L  LP        L  L     + L+S+P 
Sbjct: 121 CNKLTELPRGIERLTHLTHLALDQNQ-LKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 5   LVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIMQL 63
           L  +P  +  S L+ L  LDL    LT +P  +   L  LKEL +C N    LP  I +L
Sbjct: 76  LGALPVGVFDS-LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL 134

Query: 64  SRLTYLYLSKCNMLLSLPE 82
           + LT+L L + N L S+P 
Sbjct: 135 THLTHLALDQ-NQLKSIPH 152

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
                 LDLRG  +  I      L     +D  +N    L      L RL  L ++  N 
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVN-NNR 75

Query: 77  LLSLPELSL----SLKWLDASNCKRLQSLPEI 104
           +  + E        L  L  +N   L  L ++
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNS-LVELGDL 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           S L +   L L    +  I   +  + +L+ L +  N  + +         L  L++S  
Sbjct: 45  STLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS-Y 102

Query: 75  NMLLSLPELS--LSLKWLDASNCKRLQSLPEI 104
           N + SL  +   ++L+ L  SN K + +  EI
Sbjct: 103 NQIASLSGIEKLVNLRVLYMSNNK-ITNWGEI 133

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           SG+ +L  L L    +  I        +L+EL I  N   SL + I +L  L  LY+S  
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSN- 124

Query: 75  NMLLSLPELSLSLKWLDASNCKRLQSL 101
           N + +  E+   L         +L+ L
Sbjct: 125 NKITNWGEID-KLA-----ALDKLEDL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 22  RLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLS-- 79
            L      +  +   +  L + K L +  NN E + +S+  +  L  L L   N++    
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLG-RNLIKKIE 86

Query: 80  -LPELSLSLKWLDASNCK--RLQSLPEIPSSLEEVDAS 114
            L  ++ +L+ L  S  +   L  + ++  +L  +  S
Sbjct: 87  NLDAVADTLEELWISYNQIASLSGIEKLV-NLRVLYMS 123

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEI-GCLSSLKELDICENNFESLPASIM- 61
            L  I +  L   L  L +L+L+   LT I        S ++EL + EN  + +   +  
Sbjct: 40  ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99

Query: 62  QLSRLTYLYLSKCNMLLSLPE 82
            L +L  L L   N +  +  
Sbjct: 100 GLHQLKTLNLYD-NQISCVMP 119

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 21/99 (21%)

Query: 29  GLTAIPQEIGCLSSLKELDICENNFESLPASIM-QLSRLTYLYLSKCNMLLSLPE----- 82
           GLT++P  I   SS   L++  N  +SLP  +  +L++LT L LS+ N + SLP+     
Sbjct: 18  GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDK 74

Query: 83  LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK 121
           L+  L  L     K LQSLP            VF+KL++
Sbjct: 75  LT-KLTILYLHENK-LQSLPN----------GVFDKLTQ 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 17  LSSLDRLDLRGCGLTAIPQE--IGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK- 73
            S +  L L          E        L+ L        S+ A++ +L++L  L LS  
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74

Query: 74  --CNMLLSLPELSLSLKWLDASNCKRLQSLPEI 104
                L  L E   +L  L+ S  K ++ L  I
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTI 106

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 10  ASILSSGLSSLDRLDLRGC--GLT--AIPQEIGCLSSLKELDICENNF---ESLPASIMQ 62
              ++    ++ +L+L G    L    +   +    +L  LD+ ++     +       Q
Sbjct: 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQ 245

Query: 63  LSRLTYLYLSKCNM-----LLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
           L+ L +L LS+C       LL L E+  +LK L         +L  +  +L  +  +
Sbjct: 246 LNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIVPDGTLQLLKEALPHLQIN 301

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 23  LDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSK---CNMLLS 79
           LD        I        +L+ L +      S+ +++ +L +L  L LS+      L  
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM 89

Query: 80  LPELSLSLKWLDASNCKRLQSLPEI 104
           L E   +L  L+ S  K L+ +  +
Sbjct: 90  LAEKLPNLTHLNLSGNK-LKDISTL 113

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 11/96 (11%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 13  LSSGLSSLDRLDLRGCGLT--AIPQEIGCLSSLKELDICENNF--ESLPASIMQLSRLTY 68
           +     ++  + L   G +   + +      +L++L++    F   ++ A++ +L  L Y
Sbjct: 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517

Query: 69  LYLSKCNM------LLSLPELSLSLKWLDASNCKRL 98
           L++           L+ +     +++ + +     +
Sbjct: 518 LWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.24
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.2
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.14
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.1
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.1
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.07
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.06
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.02
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.02
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.01
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.01
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.01
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.0
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.99
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.99
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.99
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.98
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.98
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.97
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.94
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.93
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.92
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.9
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.88
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.76
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.72
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.02
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.52
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.31
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.18
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.1
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.81
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.46
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.81
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.43
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.45

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.39  E-value=8.8e-13  Score=122.03  Aligned_cols=115  Identities=28%  Similarity=0.440  Sum_probs=96.3

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      +.++.+|+.  +.++++|++|+|++|.++.+|..++.+++|++|+|++|.++.+|..++.+++|++|+|++|+.++.+|.
T Consensus        91 n~l~~lp~~--l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A           91 VPLPQFPDQ--AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             SCCSSCCSC--GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             CCchhcChh--hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccCh
Confidence            678899998  778999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C------------CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           83 L------------SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        83 ~------------~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .            +.+|+.|++++|. ++.+   |..+..++.+....++.+.
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l---p~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWTG-IRSL---PASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEEC-CCCC---CGGGGGCTTCCEEEEESSC
T ss_pred             hHhhccchhhhccCCCCCEEECcCCC-cCcc---hHhhcCCCCCCEEEccCCC
Confidence            4            5689999998864 3333   3445555555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.39  E-value=1.7e-12  Score=120.09  Aligned_cols=83  Identities=31%  Similarity=0.483  Sum_probs=40.7

Q ss_pred             CCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCEEecc
Q 037889           17 LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKWLDAS   93 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L~~~   93 (339)
                      +++|++|+|++|.|+.+|..++.+++|+.|+|++|.++.+|..++.+++|++|+|++|+..+.+|..+   .+|+.|+++
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence            44444444444444444544555555555555555555555445555555555555555555554432   344445554


Q ss_pred             cCcCCC
Q 037889           94 NCKRLQ   99 (339)
Q Consensus        94 ~~~~l~   99 (339)
                      +|..+.
T Consensus       262 ~n~~~~  267 (328)
T 4fcg_A          262 DCSNLL  267 (328)
T ss_dssp             TCTTCC
T ss_pred             CCCchh
Confidence            444433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.24  E-value=3.3e-11  Score=104.98  Aligned_cols=89  Identities=25%  Similarity=0.421  Sum_probs=57.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      +.++.+|..+    .++|+.|+|++|.|+.+|. .+..+++|+.|+|++|.++.+ |..|..+++|++|+|++|... .+
T Consensus        21 ~~l~~iP~~l----~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l   95 (220)
T 2v9t_B           21 KGLTEIPTNL----PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL   95 (220)
T ss_dssp             SCCSSCCSSC----CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CC
T ss_pred             CCcCcCCCcc----CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-cc
Confidence            4566777662    2567777777777777544 567777777777777777755 566777777777777764433 44


Q ss_pred             CC-C---CCCCCEEecccCc
Q 037889           81 PE-L---SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~-~---~~~L~~L~~~~~~   96 (339)
                      |. .   +.+|+.|+++++.
T Consensus        96 ~~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSC
T ss_pred             CHhHccCCCCCCEEECCCCC
Confidence            43 2   2566677766654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.20  E-value=5.2e-11  Score=103.68  Aligned_cols=90  Identities=18%  Similarity=0.198  Sum_probs=55.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC--ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP--QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      +.++.+|..+    ...+++|+|++|.|+.++  ..+..+++|+.|+|++|.++.+|. .|..+++|++|+|++|...+.
T Consensus        21 n~l~~iP~~~----~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~   96 (220)
T 2v70_A           21 QKLNKIPEHI----PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV   96 (220)
T ss_dssp             SCCSSCCSCC----CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcccCccCC----CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence            4566777662    234567777777777753  236677777777777777776653 566777777777776555444


Q ss_pred             CCCC---CCCCCEEecccCc
Q 037889           80 LPEL---SLSLKWLDASNCK   96 (339)
Q Consensus        80 lP~~---~~~L~~L~~~~~~   96 (339)
                      .|..   +.+|+.|+++++.
T Consensus        97 ~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           97 QHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             CGGGGTTCSSCCEEECTTSC
T ss_pred             CHhHhcCCcCCCEEECCCCc
Confidence            4432   2566666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.19  E-value=7.3e-11  Score=100.72  Aligned_cols=114  Identities=22%  Similarity=0.351  Sum_probs=87.5

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +.|+.+|..+    .++|++|+|++|+|+.+|..+..+++|+.|+|++|.++.+| ..|..+++|++|+|++|......|
T Consensus        20 ~~l~~ip~~~----~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   95 (193)
T 2wfh_A           20 KGLKVLPKGI----PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP   95 (193)
T ss_dssp             SCCSSCCSCC----CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCCCcCCCCC----CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence            5789999883    36899999999999999999999999999999999999887 569999999999999977665555


Q ss_pred             CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           82 ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        82 ~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      ..+   .+|+.|+++++. ++.++.  ..+..++.+....+..++
T Consensus        96 ~~f~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           96 RTFDGLKSLRLLSLHGND-ISVVPE--GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCBCCT--TTTTTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCEEECCCCC-CCeeCh--hhhhcCccccEEEeCCCC
Confidence            443   678899998864 333332  234444444444444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.18  E-value=1.6e-10  Score=101.19  Aligned_cols=113  Identities=26%  Similarity=0.331  Sum_probs=85.5

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++++.+|..+    .++|++|+|++|.|+++ |..+..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|+.....
T Consensus        29 ~~l~~ip~~~----~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  104 (229)
T 3e6j_A           29 KRHASVPAGI----PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP  104 (229)
T ss_dssp             SCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCccCCCC----CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence            5688899873    38899999999999995 77789999999999999999988854 688999999999997655444


Q ss_pred             CCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           81 PEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      |..   +.+|+.|+++++. ++.+   |..+..++.+....++.+.
T Consensus       105 ~~~~~~l~~L~~L~Ls~N~-l~~l---p~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A          105 SAVFDRLVHLKELFMCCNK-LTEL---PRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCSC---CTTGGGCTTCSEEECCSSC
T ss_pred             hhHhCcchhhCeEeccCCc-cccc---CcccccCCCCCEEECCCCc
Confidence            433   4688899998864 3333   4455566666666665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.16  E-value=8.9e-11  Score=99.97  Aligned_cols=114  Identities=22%  Similarity=0.274  Sum_probs=88.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc--ccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE--IGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~--i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      ++|+.+|..+  .  .+|++|+|++|.|+++|..  ++.+++|+.|+|++|.|+.+ |..|..+++|++|+|++|+..+.
T Consensus        18 ~~l~~ip~~~--~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~   93 (192)
T 1w8a_A           18 RGLKEIPRDI--P--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI   93 (192)
T ss_dssp             SCCSSCCSCC--C--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred             CCcCcCccCC--C--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc
Confidence            5789999983  3  3899999999999998764  89999999999999999977 67899999999999999877766


Q ss_pred             CCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .|..+   .+|+.|+++++..-...   +..+..++.+....++.++
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           94 SNKMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCCC
Confidence            66543   78899999887543333   3344555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.14  E-value=2.9e-10  Score=97.67  Aligned_cols=90  Identities=28%  Similarity=0.371  Sum_probs=58.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      +.++.+|..+    .++|++|+|++|.++++|.. +..+++|+.|+|++|+++.+|.. +..+++|++|+|++|+..+..
T Consensus        17 ~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   92 (208)
T 2o6s_A           17 QGRTSVPTGI----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP   92 (208)
T ss_dssp             SCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCCCCCC----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence            4566677652    45777777777777776543 56777777777777777777643 567777777777775544333


Q ss_pred             CCC---CCCCCEEecccCc
Q 037889           81 PEL---SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~   96 (339)
                      +..   +.+|+.|+++++.
T Consensus        93 ~~~~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           93 NGVFDKLTQLKELALNTNQ  111 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HhHhcCccCCCEEEcCCCc
Confidence            322   3567777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.14  E-value=1.4e-10  Score=100.89  Aligned_cols=118  Identities=22%  Similarity=0.273  Sum_probs=91.8

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~   79 (339)
                      -|+|+.+|+.. |..+++|++|+|++|.|+.+ |..+.++++|++|+|++|.|+.+|.. +..+++|++|+|++|+....
T Consensus        41 ~n~i~~i~~~~-~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~  119 (220)
T 2v9t_B           41 QNTIKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL  119 (220)
T ss_dssp             SSCCCEECTTS-STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCCcCHhH-hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence            36788898865 89999999999999999995 88899999999999999999999865 68899999999999877766


Q ss_pred             CCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .|..+   .+|+.|+++++.. +.++  +..+..++.+....+..++
T Consensus       120 ~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          120 RVDAFQDLHNLNLLSLYDNKL-QTIA--KGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCC-SCCC--TTTTTTCTTCCEEECCSSC
T ss_pred             CHHHcCCCCCCCEEECCCCcC-CEEC--HHHHhCCCCCCEEEeCCCC
Confidence            66654   6789999988653 3222  2234444444444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.14  E-value=7.7e-11  Score=120.30  Aligned_cols=116  Identities=24%  Similarity=0.225  Sum_probs=81.8

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      |+++...|..  +..+..|+.|+|++|.|..+|..+..+++|+.|+|++|.|+.+|..|+.|++|++|+|++|+.. .+|
T Consensus       210 ~n~~~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp  286 (727)
T 4b8c_D          210 ENRMVMPKDS--KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLP  286 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred             ccceecChhh--hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence            3445544554  7888999999999999988998888999999999999999999988999999999999986654 788


Q ss_pred             CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCCC
Q 037889           82 ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSH  124 (339)
Q Consensus        82 ~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~~  124 (339)
                      ..+   .+|+.|++++|. +..+   |..+..+..+....++.+..
T Consensus       287 ~~~~~l~~L~~L~L~~N~-l~~l---p~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNM-VTTL---PWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SSGGGGTTCSEEECCSSC-CCCC---CSSTTSCTTCCCEECTTSCC
T ss_pred             hhhcCCCCCCEEECCCCC-CCcc---ChhhhcCCCccEEeCCCCcc
Confidence            755   678888888763 3444   44466666666666665553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.13  E-value=1.8e-10  Score=102.03  Aligned_cols=82  Identities=26%  Similarity=0.300  Sum_probs=39.4

Q ss_pred             CCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCCCC---CCCCC
Q 037889           14 SSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLPEL---SLSLK   88 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP~~---~~~L~   88 (339)
                      |.++++|++|+|++|.|++++ ..+..+++|+.|+|++|+++.+| ..+..+++|++|+|++|+..+..|..   +.+|+
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  134 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK  134 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence            445555555555555555532 23455555555555555555444 23445555555555554333222221   24455


Q ss_pred             EEecccC
Q 037889           89 WLDASNC   95 (339)
Q Consensus        89 ~L~~~~~   95 (339)
                      .|+++++
T Consensus       135 ~L~Ls~N  141 (251)
T 3m19_A          135 ELRLNTN  141 (251)
T ss_dssp             EEECCSS
T ss_pred             EEECcCC
Confidence            5555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=2.4e-10  Score=95.82  Aligned_cols=89  Identities=27%  Similarity=0.352  Sum_probs=69.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++|+.+|..+    .++|++|+|++|.|+++ |..+.++++|+.|+|++|+|+.+|.. +..+++|++|+|++|+.. .+
T Consensus        22 n~l~~iP~~~----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l   96 (174)
T 2r9u_A           22 IRLASVPAGI----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SI   96 (174)
T ss_dssp             SCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCCCccCCCc----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-ee
Confidence            5688888873    37889999999999986 66788999999999999999988865 578999999999986544 45


Q ss_pred             CCC----CCCCCEEecccCc
Q 037889           81 PEL----SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~----~~~L~~L~~~~~~   96 (339)
                      |..    +.+|+.|++.++.
T Consensus        97 ~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           97 PRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CTTTTTTCTTCSEEECCSSC
T ss_pred             CHHHhccccCCCEEEeCCCC
Confidence            542    3567777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.11  E-value=2.6e-10  Score=99.82  Aligned_cols=117  Identities=22%  Similarity=0.337  Sum_probs=89.4

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~   79 (339)
                      -|+|+.+++.. |.++++|++|+|++|.|+.+|.. +..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|+ +..
T Consensus        49 ~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~  126 (229)
T 3e6j_A           49 DNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTE  126 (229)
T ss_dssp             SSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCS
T ss_pred             CCccCccCHHH-hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccc
Confidence            36677885554 89999999999999999998755 68999999999999999999855 6899999999999865 558


Q ss_pred             CCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      +|..+   .+|+.|+++++. ++.++.  ..+..++.+....+..++
T Consensus       127 lp~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          127 LPRGIERLTHLTHLALDQNQ-LKSIPH--GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCTTGGGCTTCSEEECCSSC-CCCCCT--TTTTTCTTCCEEECTTSC
T ss_pred             cCcccccCCCCCEEECCCCc-CCccCH--HHHhCCCCCCEEEeeCCC
Confidence            88644   688999998864 333332  334445555554554444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.11  E-value=1.7e-10  Score=98.19  Aligned_cols=95  Identities=25%  Similarity=0.293  Sum_probs=81.1

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      -|+|+.+|+...+..+++|++|+|++|.|+++ |..+..+++|+.|+|++|+|+.+|. .+..+++|++|+|++|+..+.
T Consensus        38 ~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence            36788887641278999999999999999996 7889999999999999999998864 588999999999999888887


Q ss_pred             CCCCC---CCCCEEecccCc
Q 037889           80 LPELS---LSLKWLDASNCK   96 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~   96 (339)
                      .|..+   .+|+.|++.++.
T Consensus       118 ~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          118 MPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CTTSSTTCTTCCEEECTTCC
T ss_pred             CHHHhhcCCCCCEEEeCCCC
Confidence            78754   578888888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=3.3e-10  Score=94.53  Aligned_cols=90  Identities=27%  Similarity=0.303  Sum_probs=69.0

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++|+.+|..+    .++|++|+|++|.|+++ |..+..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|+..+..
T Consensus        19 n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~   94 (170)
T 3g39_A           19 KSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP   94 (170)
T ss_dssp             SCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence            5788888873    37888999999999886 66788899999999999999988765 578899999999986554433


Q ss_pred             CCCC---CCCCEEecccCc
Q 037889           81 PELS---LSLKWLDASNCK   96 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~   96 (339)
                      |..+   .+|+.|++.++.
T Consensus        95 ~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           95 RGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCCCCEEEeCCCC
Confidence            3333   567777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=1.3e-10  Score=115.39  Aligned_cols=59  Identities=29%  Similarity=0.431  Sum_probs=28.4

Q ss_pred             CCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccC
Q 037889           15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC   74 (339)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c   74 (339)
                      +++++|+.|+|++|.|+.+|..++.+++|+.|+|++|.|+.+| .++.+++|+.|+|++|
T Consensus       460 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             cccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            4444444444444444444444444444444444444444444 4444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.10  E-value=2.1e-10  Score=100.75  Aligned_cols=90  Identities=20%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             CcccCCcCcCCCCCCccEEEeec-CCCCccC-ccccCCCCCcEEEeecCCCccCchhhhcCccCc---EEEcccCCCCcc
Q 037889            5 LVTIPASILSSGLSSLDRLDLRG-CGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQLSRLT---YLYLSKCNMLLS   79 (339)
Q Consensus         5 L~~lP~~~~~~~l~~L~~L~Ls~-n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~---~L~L~~c~~l~~   79 (339)
                      ++.+|+.. |.++++|++|+|++ |.++.+| ..+.++++|+.|++++|.++.+|. +..+++|+   +|++++|..+..
T Consensus        68 l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~  145 (239)
T 2xwt_C           68 LQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS  145 (239)
T ss_dssp             CCEECTTT-EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred             cceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh
Confidence            67777654 67777788888877 7777765 457777777777777777777775 66666666   777777634555


Q ss_pred             CCCC-C---CCCC-EEecccCc
Q 037889           80 LPEL-S---LSLK-WLDASNCK   96 (339)
Q Consensus        80 lP~~-~---~~L~-~L~~~~~~   96 (339)
                      +|.. +   .+|+ .|+++++.
T Consensus       146 i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          146 IPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             ECTTTTTTTBSSEEEEECCSCC
T ss_pred             cCcccccchhcceeEEEcCCCC
Confidence            5542 2   4566 66666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.10  E-value=2.2e-10  Score=99.74  Aligned_cols=118  Identities=14%  Similarity=0.180  Sum_probs=90.2

Q ss_pred             CCCCcccC-CcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889            2 CRSLVTIP-ASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         2 Cn~L~~lP-~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~   78 (339)
                      .|+|+.++ ..+ |..+++|++|+|++|.|+.+|. .+..+++|+.|+|++|.++.+|. .+..+++|++|+|++|+..+
T Consensus        41 ~N~l~~~~~~~~-~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  119 (220)
T 2v70_A           41 NNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC  119 (220)
T ss_dssp             SSCCCEECCCCC-GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC
T ss_pred             CCcCCccCchhh-hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe
Confidence            36788884 444 7899999999999999999765 79999999999999999998875 58899999999999988777


Q ss_pred             cCCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           79 SLPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        79 ~lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      ..|..+   .+|+.|+++++..-...   +..+..++.+....++.++
T Consensus       120 ~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          120 VGNDSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             BCTTSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCC
T ss_pred             ECHhHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcC
Confidence            667654   67889999886532222   3344445555444555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.08  E-value=3.8e-10  Score=96.24  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=78.2

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      .|+|+.+|..  |.++++|++|+|++|.|+.++ ..|.++++|+.|+|++|.++.+| ..|..+++|++|+|++|+.. .
T Consensus        40 ~n~i~~ip~~--~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~  116 (193)
T 2wfh_A           40 GNQFTLVPKE--LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-V  116 (193)
T ss_dssp             SSCCCSCCGG--GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-B
T ss_pred             CCcCchhHHH--hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-e
Confidence            4678899977  899999999999999999975 56999999999999999999887 46999999999999996655 5


Q ss_pred             CCC-C---CCCCCEEecccCc
Q 037889           80 LPE-L---SLSLKWLDASNCK   96 (339)
Q Consensus        80 lP~-~---~~~L~~L~~~~~~   96 (339)
                      +|. .   +.+|+.|++.++.
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          117 VPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             eChhhhhcCccccEEEeCCCC
Confidence            554 3   3678888888754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.08  E-value=5.6e-10  Score=98.86  Aligned_cols=117  Identities=23%  Similarity=0.289  Sum_probs=88.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+|+.+++.. |.++++|++|+|++|.|+++| ..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+..+..
T Consensus        69 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           69 NQLQTLSAGV-FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             SCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCccCHhH-hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            5677787775 899999999999999999976 4579999999999999999999865 689999999999997655444


Q ss_pred             CCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           81 PELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      |..+   .+|+.|+++++.. +.++  +..+..++.+....+..++
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQL-QSVP--HGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCC-SCCC--TTTTTTCTTCCEEECCSCC
T ss_pred             HHHcCcCcCCCEEECCCCcC-CccC--HHHHhCCCCCCEEEeeCCc
Confidence            4333   6889999988653 3222  2334445555555555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.08  E-value=5.7e-10  Score=99.89  Aligned_cols=90  Identities=23%  Similarity=0.396  Sum_probs=57.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++|+.+|..+    .++|+.|+|++|.|+.+|. .+..+++|++|+|++|.++.+|.. +..+++|++|+|++|......
T Consensus        26 ~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~  101 (270)
T 2o6q_A           26 KKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP  101 (270)
T ss_dssp             SCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred             CCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence            4566777662    2567777777777777654 577777777777777777777654 356777777777775443322


Q ss_pred             CCC---CCCCCEEecccCc
Q 037889           81 PEL---SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~   96 (339)
                      +..   +.+|+.|+++++.
T Consensus       102 ~~~~~~l~~L~~L~l~~n~  120 (270)
T 2o6q_A          102 IGVFDQLVNLAELRLDRNQ  120 (270)
T ss_dssp             TTTTTTCSSCCEEECCSSC
T ss_pred             HhHcccccCCCEEECCCCc
Confidence            222   2566777776644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.07  E-value=3.5e-11  Score=110.42  Aligned_cols=89  Identities=27%  Similarity=0.313  Sum_probs=71.7

Q ss_pred             ccCCcCcCCCCCCccEEEeec-CCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889            7 TIPASILSSGLSSLDRLDLRG-CGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPEL   83 (339)
Q Consensus         7 ~lP~~~~~~~l~~L~~L~Ls~-n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~   83 (339)
                      .+|+.  +.++++|++|+|++ |.+.+ +|..++++++|++|+|++|.++ .+|..+..+++|++|+|++|...+.+|..
T Consensus        67 ~~~~~--l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           67 PIPSS--LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             ECCGG--GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             ccChh--HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence            57777  78888888888884 77775 7888888888888888888887 77888888888888888887777777764


Q ss_pred             C---CCCCEEecccCcC
Q 037889           84 S---LSLKWLDASNCKR   97 (339)
Q Consensus        84 ~---~~L~~L~~~~~~~   97 (339)
                      +   .+|+.|+++++..
T Consensus       145 ~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             GGGCTTCCEEECCSSCC
T ss_pred             HhcCCCCCeEECcCCcc
Confidence            3   6778888877653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.07  E-value=9.7e-10  Score=98.55  Aligned_cols=91  Identities=32%  Similarity=0.401  Sum_probs=65.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+++.++ .  +..+++|++|+|++|.++++|.. ++.+++|++|+|++|+++.+|.. ++.+++|++|+|++|+..+..
T Consensus        73 n~l~~~~-~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  149 (272)
T 3rfs_A           73 NKLHDIS-A--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP  149 (272)
T ss_dssp             SCCCCCG-G--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCCCch-h--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC
Confidence            4555554 3  67788888888888888886544 67888888888888888877644 678888888888886555443


Q ss_pred             CCC---CCCCCEEecccCc
Q 037889           81 PEL---SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~   96 (339)
                      |..   +.+|+.|++++|.
T Consensus       150 ~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A          150 KGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHhccCccCCEEECCCCC
Confidence            432   3677888887764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.07  E-value=3.2e-10  Score=112.80  Aligned_cols=91  Identities=26%  Similarity=0.287  Sum_probs=48.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+|+.+|+.. |.++++|++|+|++|.|+++|+ .|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|+.. .+
T Consensus        62 N~i~~l~~~~-f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l  139 (635)
T 4g8a_A           62 NPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SL  139 (635)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CS
T ss_pred             CCCCCCCHHH-HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CC
Confidence            4455555443 5556666666666666665433 35556666666666666665553 3555666666666654333 23


Q ss_pred             CC-C---CCCCCEEecccC
Q 037889           81 PE-L---SLSLKWLDASNC   95 (339)
Q Consensus        81 P~-~---~~~L~~L~~~~~   95 (339)
                      |. .   +.+|+.|+++++
T Consensus       140 ~~~~~~~L~~L~~L~Ls~N  158 (635)
T 4g8a_A          140 ENFPIGHLKTLKELNVAHN  158 (635)
T ss_dssp             TTCCCTTCTTCCEEECCSS
T ss_pred             ChhhhhcCcccCeeccccC
Confidence            32 2   245555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.06  E-value=6.7e-10  Score=99.44  Aligned_cols=93  Identities=24%  Similarity=0.326  Sum_probs=70.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++++.+|+.. |.++++|++|+|++|.|+++|.. +..+++|++|+|++|.++.+|. .+..+++|++|+|++|......
T Consensus        47 n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  125 (270)
T 2o6q_A           47 NKLSSLPSKA-FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP  125 (270)
T ss_dssp             SCCSCCCTTS-SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             CCCCeeCHHH-hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC
Confidence            5677787754 78888888888888888887765 4778888888888888888774 4578888888888886655544


Q ss_pred             CCC---CCCCCEEecccCc
Q 037889           81 PEL---SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~   96 (339)
                      |..   +.+|+.|+++++.
T Consensus       126 ~~~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A          126 PRVFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHhCcCcCCCEEECCCCc
Confidence            433   3677888887764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=4.3e-10  Score=95.95  Aligned_cols=112  Identities=16%  Similarity=0.116  Sum_probs=77.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCcc-CchhhhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +.++.+| .  +..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..++.+++|++|+|++|......|
T Consensus        54 n~i~~l~-~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  129 (197)
T 4ezg_A           54 INVTDLT-G--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL  129 (197)
T ss_dssp             SCCSCCT-T--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH
T ss_pred             CCccChH-H--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH
Confidence            4566677 4  677888888888888776654 67778888888888888874 56778888888888888877666555


Q ss_pred             C---CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889           82 E---LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH  122 (339)
Q Consensus        82 ~---~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~  122 (339)
                      .   .+++|+.|++++|..+..++    .+..++.+....++.+
T Consensus       130 ~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          130 TKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFD  169 (197)
T ss_dssp             HHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTB
T ss_pred             HHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCC
Confidence            4   23678888888776444443    3444454444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.06  E-value=5.1e-10  Score=100.86  Aligned_cols=91  Identities=24%  Similarity=0.307  Sum_probs=62.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      +.++.+|..+    .++|++|+|++|.++.+| ..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|..++.+
T Consensus        21 ~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~   96 (285)
T 1ozn_A           21 QGLQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (285)
T ss_dssp             SCCSSCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             CCcccCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence            3467777652    457778888888887765 4577778888888888877766 566777788888888876645555


Q ss_pred             -CCCC---CCCCEEecccCcC
Q 037889           81 -PELS---LSLKWLDASNCKR   97 (339)
Q Consensus        81 -P~~~---~~L~~L~~~~~~~   97 (339)
                       |..+   .+|+.|++.++..
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~l  117 (285)
T 1ozn_A           97 DPATFHGLGRLHTLHLDRCGL  117 (285)
T ss_dssp             CTTTTTTCTTCCEEECTTSCC
T ss_pred             CHHHhcCCcCCCEEECCCCcC
Confidence             4332   5677777777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.06  E-value=8.8e-10  Score=92.18  Aligned_cols=114  Identities=26%  Similarity=0.406  Sum_probs=86.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++++.+|..+    .++|+.|++++|.++++|. .++.+++|++|+|++|.++.+|.. +..+++|++|+|++|+..+..
T Consensus        17 ~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   92 (177)
T 2o6r_A           17 KGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP   92 (177)
T ss_dssp             SCCSSCCTTC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCccCCCCC----CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC
Confidence            5688899773    4789999999999999765 478999999999999999998855 689999999999997666544


Q ss_pred             CCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           81 PEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      |..   +.+|+.|+++++. ++.++.  ..+..++.+....++.++
T Consensus        93 ~~~~~~l~~L~~L~l~~N~-l~~~~~--~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           93 NGVFDKLTQLKELALDTNQ-LKSVPD--GIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             HHHhhCCcccCEEECcCCc-ceEeCH--HHhcCCcccCEEEecCCC
Confidence            433   3689999998864 343332  223455555556666555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.06  E-value=6.8e-10  Score=110.36  Aligned_cols=111  Identities=22%  Similarity=0.198  Sum_probs=84.4

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +|+++|+.  +  -+++++|+|++|+|+++| .+|.++++|++|+|++|+|+.+|+ .|.+|++|++|+|++|+ +..+|
T Consensus        42 ~l~~vP~~--l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~  116 (635)
T 4g8a_A           42 NFYKIPDN--L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA  116 (635)
T ss_dssp             CCSSCCSS--S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred             CcCccCCC--C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCC
Confidence            68899998  3  358999999999999986 579999999999999999999975 68999999999999975 55565


Q ss_pred             C-C---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889           82 E-L---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH  122 (339)
Q Consensus        82 ~-~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~  122 (339)
                      . .   +.+|+.|++++|. ++.++.  ..++.++.+....++.+
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~--~~~~~L~~L~~L~Ls~N  158 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETN-LASLEN--FPIGHLKTLKELNVAHN  158 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSC-CCCSTT--CCCTTCTTCCEEECCSS
T ss_pred             HHHhcCCCCCCEEECCCCc-CCCCCh--hhhhcCcccCeeccccC
Confidence            3 3   4789999999874 333332  22444444444444433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.05  E-value=3e-10  Score=103.08  Aligned_cols=87  Identities=26%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      ++|+.+|..+    .++|+.|+|++|.|+.+ |..+..+++|+.|+|++|.++.+|.. +.+++|++|+|++| .+..+|
T Consensus        20 ~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~   93 (290)
T 1p9a_G           20 RNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLP   93 (290)
T ss_dssp             SCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCC
T ss_pred             CCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCc
Confidence            4566666652    24566666666666663 44566666666666666666655533 55556666666653 333455


Q ss_pred             CCC---CCCCEEecccC
Q 037889           82 ELS---LSLKWLDASNC   95 (339)
Q Consensus        82 ~~~---~~L~~L~~~~~   95 (339)
                      ..+   .+|+.|+++++
T Consensus        94 ~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           94 LLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             CCTTTCTTCCEEECCSS
T ss_pred             hhhccCCCCCEEECCCC
Confidence            432   34555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.05  E-value=8e-10  Score=106.33  Aligned_cols=98  Identities=27%  Similarity=0.360  Sum_probs=54.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+|+.+++.. |.++++|++|+|++|.|+.+ |..+.++++|++|+|++|.++.+|.. +..+++|++|+|++|+.. .+
T Consensus        85 n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  162 (452)
T 3zyi_A           85 NNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SI  162 (452)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EE
T ss_pred             CcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-ee
Confidence            3444443333 55666666666666666664 34566666666666666666665533 555666666666664433 33


Q ss_pred             CC-C---CCCCCEEecccCcCCCcCC
Q 037889           81 PE-L---SLSLKWLDASNCKRLQSLP  102 (339)
Q Consensus        81 P~-~---~~~L~~L~~~~~~~l~~l~  102 (339)
                      |. .   +.+|+.|++.+|..++.++
T Consensus       163 ~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          163 PSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             CTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CHhHHhcCCcccEEeCCCCCCccccC
Confidence            32 2   2456666666555544443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.05  E-value=1.2e-09  Score=99.00  Aligned_cols=91  Identities=29%  Similarity=0.361  Sum_probs=69.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      |+|+.+|..   ..+++|++|+|++|.|+.+|..+..+++|+.|+|++|+++.+| ..|..+++|++|+|++|+.....|
T Consensus        65 n~l~~~~~~---~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  141 (290)
T 1p9a_G           65 AELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (290)
T ss_dssp             SCCCEEECC---SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CccCcccCC---CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence            556666653   5788888888888888888888888888888888888888887 567888888888888865554333


Q ss_pred             CC---CCCCCEEecccCc
Q 037889           82 EL---SLSLKWLDASNCK   96 (339)
Q Consensus        82 ~~---~~~L~~L~~~~~~   96 (339)
                      ..   +.+|+.|+++++.
T Consensus       142 ~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G          142 GLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             TTTTTCTTCCEEECTTSC
T ss_pred             hhcccccCCCEEECCCCc
Confidence            33   3578888888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.05  E-value=1.3e-09  Score=93.64  Aligned_cols=118  Identities=25%  Similarity=0.364  Sum_probs=89.9

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~   79 (339)
                      .++++.+|+.+ +.++++|++|+|++|.++.+|.. +..+++|++|+|++|+++.+|.. +..+++|++|+|++|+..+.
T Consensus        37 ~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  115 (208)
T 2o6s_A           37 TNSLKSLPNGV-FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL  115 (208)
T ss_dssp             SSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccCcCChhh-hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCccc
Confidence            35788888876 88999999999999999998765 68999999999999999998855 68999999999999765544


Q ss_pred             CCCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .|..   +.+|+.|+++++. ++.++.  ..+..++.+....++.+.
T Consensus       116 ~~~~~~~l~~L~~L~l~~N~-l~~~~~--~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          116 PDGVFDKLTQLKDLRLYQNQ-LKSVPD--GVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCSCC
T ss_pred             CHhHhccCCcCCEEECCCCc-cceeCH--HHhccCCCccEEEecCCC
Confidence            4433   3689999998864 333322  234455555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.05  E-value=2.5e-10  Score=92.74  Aligned_cols=60  Identities=28%  Similarity=0.366  Sum_probs=28.8

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCcc-CchhhhcCccCcEEEcccC
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTYLYLSKC   74 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~L~~c   74 (339)
                      +..+++|++|++++|.++.+ ..++.+++|+.|+|++|.++. +|..+..+++|++|++++|
T Consensus        38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N   98 (149)
T 2je0_A           38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN   98 (149)
T ss_dssp             CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred             HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence            44444455555555544444 344444455555555555443 4444444445555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.05  E-value=1.4e-10  Score=116.68  Aligned_cols=93  Identities=10%  Similarity=0.150  Sum_probs=77.3

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCc------------------cCcccc--CCCCCcEEEeecCCCc-cCchhh
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTA------------------IPQEIG--CLSSLKELDICENNFE-SLPASI   60 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~------------------lP~~i~--~l~~L~~L~Ls~n~l~-~lP~~i   60 (339)
                      +|+++.+|+.  ++++++|++|+|++|.+++                  +|..++  ++++|++|+|++|.+. .+|..+
T Consensus       192 ~n~l~~ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITFVSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEEECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCccCCHH--HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence            4677778888  8889999999999999998                  899988  9999999999999866 788889


Q ss_pred             hcCccCcEEEcccCC-CCc-cCCCCC---------CCCCEEecccCc
Q 037889           61 MQLSRLTYLYLSKCN-MLL-SLPELS---------LSLKWLDASNCK   96 (339)
Q Consensus        61 ~~l~~L~~L~L~~c~-~l~-~lP~~~---------~~L~~L~~~~~~   96 (339)
                      +++++|++|+|++|+ ..+ .+|..+         .+|+.|++++|.
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence            999999999999887 555 677533         678888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.04  E-value=7.6e-10  Score=103.49  Aligned_cols=68  Identities=26%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCcc-cc-CCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IG-CLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCN   75 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~-~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~   75 (339)
                      +|+.+|..+    ...++.|+|++|+|+++|.. +. .+++|+.|+|++|+|+.+| ..|..+++|++|+|++|+
T Consensus        29 ~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           29 QLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             CCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcCccCccC----CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            455555542    12344555555555543332 32 4455555555555555443 234445555555555433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.04  E-value=6.4e-10  Score=92.17  Aligned_cols=78  Identities=22%  Similarity=0.238  Sum_probs=49.5

Q ss_pred             CCCccEEEeecCCCC--ccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC---CCCCCEEe
Q 037889           17 LSSLDRLDLRGCGLT--AIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL---SLSLKWLD   91 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~--~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~---~~~L~~L~   91 (339)
                      .++|+.|+|++|.++  .+|..+..+++|+.|+|++|.++.+ ..+..+++|++|+|++|.....+|..   +++|+.|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            456666666666666  4666666666666666666666666 45666666666666665555545543   35666666


Q ss_pred             cccC
Q 037889           92 ASNC   95 (339)
Q Consensus        92 ~~~~   95 (339)
                      +++|
T Consensus       102 Ls~N  105 (168)
T 2ell_A          102 LSGN  105 (168)
T ss_dssp             CBSS
T ss_pred             ccCC
Confidence            6665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.02  E-value=5.5e-10  Score=103.85  Aligned_cols=96  Identities=28%  Similarity=0.330  Sum_probs=60.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+++.+|... +.++++|++|+|++|.++++ |..+.++++|++|+|++|+++.+|.. ++.+++|++|+|++|+ +..+
T Consensus        62 n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l  139 (353)
T 2z80_A           62 NRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTL  139 (353)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSS
T ss_pred             CcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-Cccc
Confidence            4455665543 66677777777777777764 44577777777777777777777654 6677777777777643 3345


Q ss_pred             CC--C---CCCCCEEecccCcCCCc
Q 037889           81 PE--L---SLSLKWLDASNCKRLQS  100 (339)
Q Consensus        81 P~--~---~~~L~~L~~~~~~~l~~  100 (339)
                      |.  .   +.+|+.|+++++..++.
T Consensus       140 ~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A          140 GETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             CSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             CchhhhccCCCCcEEECCCCccccc
Confidence            54  2   35667777766644433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.02  E-value=1.9e-10  Score=117.33  Aligned_cols=94  Identities=31%  Similarity=0.392  Sum_probs=82.1

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .|++..+|..  +.++++|++|+|++|.|+.+|..|++|++|+.|+|++|.|+.+|..|+.|++|++|+|++|. ++.+|
T Consensus       233 ~n~l~~l~~~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp  309 (727)
T 4b8c_D          233 NLQIFNISAN--IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLP  309 (727)
T ss_dssp             TSCCSCCCGG--GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCC
T ss_pred             CCCCCCCChh--hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccC
Confidence            4678889988  56899999999999999999999999999999999999999999999999999999999864 56888


Q ss_pred             CCC---CCCCEEecccCcCC
Q 037889           82 ELS---LSLKWLDASNCKRL   98 (339)
Q Consensus        82 ~~~---~~L~~L~~~~~~~l   98 (339)
                      ..+   .+|+.|+++++...
T Consensus       310 ~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          310 WEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SSTTSCTTCCCEECTTSCCC
T ss_pred             hhhhcCCCccEEeCCCCccC
Confidence            765   57788888876543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.01  E-value=3.5e-10  Score=103.67  Aligned_cols=79  Identities=33%  Similarity=0.502  Sum_probs=46.0

Q ss_pred             CCccEEEeecCCCCc---cCccccCCCCCcEEEeec-CCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCE
Q 037889           18 SSLDRLDLRGCGLTA---IPQEIGCLSSLKELDICE-NNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKW   89 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~Ls~-n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~   89 (339)
                      .+++.|+|++|.+++   +|..++++++|++|+|++ |.+. .+|..++.+++|++|+|++|+..+.+|..+   .+|+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            355666666666653   566666666666666663 5555 456666666666666666655555555432   45555


Q ss_pred             EecccCc
Q 037889           90 LDASNCK   96 (339)
Q Consensus        90 L~~~~~~   96 (339)
                      |+++++.
T Consensus       130 L~Ls~N~  136 (313)
T 1ogq_A          130 LDFSYNA  136 (313)
T ss_dssp             EECCSSE
T ss_pred             EeCCCCc
Confidence            5555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.01  E-value=1e-09  Score=106.02  Aligned_cols=92  Identities=23%  Similarity=0.339  Sum_probs=50.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+|+.+++.. |.++++|++|+|++|.|+.+ |..+.++++|++|+|++|.++.+|.. +..+++|++|+|++|+.....
T Consensus        42 n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~  120 (477)
T 2id5_A           42 NRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL  120 (477)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred             CccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC
Confidence            3444444333 55566666666666666653 55566666666666666666655532 455666666666665554444


Q ss_pred             CCCC---CCCCEEecccC
Q 037889           81 PELS---LSLKWLDASNC   95 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~   95 (339)
                      |..+   .+|+.|++.++
T Consensus       121 ~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A          121 DYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             TTTTTTCTTCCEEEECCT
T ss_pred             hhHccccccCCEEECCCC
Confidence            4332   45555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.01  E-value=8.5e-10  Score=99.37  Aligned_cols=93  Identities=26%  Similarity=0.352  Sum_probs=68.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCC-CCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCG-LTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~-l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      |+++.+++.. +.++++|++|+|++|. +..+ |..+..+++|+.|+|++|.++.+ |..+..+++|++|++++|...+.
T Consensus        66 n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  144 (285)
T 1ozn_A           66 NVLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL  144 (285)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CccceeCHhh-cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence            4566664443 7888888888888886 7776 66788888888888888888876 45678888888888888665544


Q ss_pred             CCCC---CCCCCEEecccCc
Q 037889           80 LPEL---SLSLKWLDASNCK   96 (339)
Q Consensus        80 lP~~---~~~L~~L~~~~~~   96 (339)
                      .+..   +.+|+.|+++++.
T Consensus       145 ~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A          145 PDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSC
T ss_pred             CHhHhccCCCccEEECCCCc
Confidence            4332   3577888887763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.00  E-value=1.6e-09  Score=103.95  Aligned_cols=97  Identities=26%  Similarity=0.393  Sum_probs=54.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+++.++... |.++++|++|+|++|.|+.++ ..+.++++|+.|+|++|+++.+|. .+..+++|++|+|++|... .+
T Consensus        74 n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~  151 (440)
T 3zyj_A           74 NQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SI  151 (440)
T ss_dssp             CCCCEECTTT-TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EE
T ss_pred             CcCCeeCHHH-hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-cc
Confidence            3444554433 566666666666666666643 456666666666666666666653 4566666666666664433 33


Q ss_pred             CC-C---CCCCCEEecccCcCCCcC
Q 037889           81 PE-L---SLSLKWLDASNCKRLQSL  101 (339)
Q Consensus        81 P~-~---~~~L~~L~~~~~~~l~~l  101 (339)
                      |. .   +.+|+.|++.++..+..+
T Consensus       152 ~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          152 PSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             CTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CHHHhhhCcccCEeCCCCCCCccee
Confidence            32 2   245566666555444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.99  E-value=2.1e-09  Score=89.88  Aligned_cols=70  Identities=27%  Similarity=0.436  Sum_probs=34.4

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKC   74 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c   74 (339)
                      +++.+|+.. +..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|.++.+|.. +..+++|++|+|++|
T Consensus        39 ~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           39 KLQSLPHGV-FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             CCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccEeCHHH-hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            344444443 44555555555555555554332 34555555555555555544432 344555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.99  E-value=1.6e-09  Score=92.34  Aligned_cols=90  Identities=26%  Similarity=0.286  Sum_probs=77.8

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCcc-CchhhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .++.++ .  +..+++|++|++++|.++. .|..++.+++|+.|+|++|.++. .|..++.+++|++|+|++|+.++.+|
T Consensus        77 ~~~~~~-~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A           77 HATNYN-P--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             CCSCCG-G--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             CCCcch-h--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence            455554 3  7889999999999999998 78899999999999999999995 67889999999999999988678787


Q ss_pred             CC--CCCCCEEecccCc
Q 037889           82 EL--SLSLKWLDASNCK   96 (339)
Q Consensus        82 ~~--~~~L~~L~~~~~~   96 (339)
                      ..  +++|+.|++++|.
T Consensus       154 ~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          154 PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             GGGGCSSCCEEECTTBC
T ss_pred             hhcCCCCCCEEECCCCC
Confidence            43  4789999998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.99  E-value=7.9e-10  Score=113.48  Aligned_cols=94  Identities=28%  Similarity=0.329  Sum_probs=84.4

Q ss_pred             cCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC-
Q 037889            8 IPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS-   84 (339)
Q Consensus         8 lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~-   84 (339)
                      +|..  +.++++|++|+|++|++++ +|..++++++|+.|+|++|+++ .+|..++.+++|+.|||++|+..+.+|..+ 
T Consensus       624 ~~~~--~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          624 TSPT--FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             CCCS--CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             Cchh--hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence            4666  7889999999999999997 9999999999999999999999 899999999999999999999999999865 


Q ss_pred             --CCCCEEecccCcCCCcCCC
Q 037889           85 --LSLKWLDASNCKRLQSLPE  103 (339)
Q Consensus        85 --~~L~~L~~~~~~~l~~l~~  103 (339)
                        .+|+.|++++|.....+|.
T Consensus       702 ~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GCCCCSEEECCSSEEEEECCS
T ss_pred             CCCCCCEEECcCCcccccCCC
Confidence              6788999998876556654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=3.5e-10  Score=117.30  Aligned_cols=93  Identities=14%  Similarity=0.150  Sum_probs=74.2

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCc------------------cCcccc--CCCCCcEEEeecCCCc-cCchhh
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTA------------------IPQEIG--CLSSLKELDICENNFE-SLPASI   60 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~------------------lP~~i~--~l~~L~~L~Ls~n~l~-~lP~~i   60 (339)
                      +|+++.+|+.  ++++++|++|+|++|+|++                  +|..++  ++++|+.|+|++|++. .+|..+
T Consensus       434 ~N~L~~IP~~--l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l  511 (876)
T 4ecn_A          434 TNRITFISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL  511 (876)
T ss_dssp             SCEEEEECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred             cCcccchhHH--HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence            3566668887  7889999999999999988                  888887  8999999999998865 788888


Q ss_pred             hcCccCcEEEcccCC-CCc-cCCCCC----------CCCCEEecccCc
Q 037889           61 MQLSRLTYLYLSKCN-MLL-SLPELS----------LSLKWLDASNCK   96 (339)
Q Consensus        61 ~~l~~L~~L~L~~c~-~l~-~lP~~~----------~~L~~L~~~~~~   96 (339)
                      +++++|+.|+|++|+ ..+ .+|..+          ++|+.|++++|.
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            889999999999887 544 566432          378888887765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.98  E-value=4.8e-10  Score=98.41  Aligned_cols=97  Identities=20%  Similarity=0.282  Sum_probs=58.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCC-CCccCc-cccCCCCCcEEEeec-CCCccCc-hhhhcCccCcEEEcccCCCCc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCG-LTAIPQ-EIGCLSSLKELDICE-NNFESLP-ASIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~-l~~lP~-~i~~l~~L~~L~Ls~-n~l~~lP-~~i~~l~~L~~L~L~~c~~l~   78 (339)
                      |+++.+|+.. |.++++|++|++++|. ++.+|. .+.++++|+.|+|++ |+++.+| ..+..+++|++|++++|.. .
T Consensus        41 n~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~  118 (239)
T 2xwt_C           41 THLRTIPSHA-FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-K  118 (239)
T ss_dssp             CCCSEECTTT-TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-C
T ss_pred             CcceEECHHH-ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-c
Confidence            4556666544 6666777777777775 666554 566677777777776 6676665 3456667777777776543 3


Q ss_pred             cCCC--CCCCCC---EEecccCcCCCcC
Q 037889           79 SLPE--LSLSLK---WLDASNCKRLQSL  101 (339)
Q Consensus        79 ~lP~--~~~~L~---~L~~~~~~~l~~l  101 (339)
                      .+|.  .+.+|+   .|+++++..++.+
T Consensus       119 ~lp~~~~l~~L~~L~~L~l~~N~~l~~i  146 (239)
T 2xwt_C          119 MFPDLTKVYSTDIFFILEITDNPYMTSI  146 (239)
T ss_dssp             SCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred             cccccccccccccccEEECCCCcchhhc
Confidence            3554  224454   6666665344443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.97  E-value=1.7e-09  Score=96.87  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=64.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +.++.++.   +..+++|++|+|++|.++.++ .+..+++|++|+|++|.++.+|.. ++.+++|++|+|++|+..+..|
T Consensus        51 ~~i~~~~~---l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  126 (272)
T 3rfs_A           51 SDIKSVQG---IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD  126 (272)
T ss_dssp             SCCCCCTT---GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCcccccc---cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence            34555553   567788888888888888764 677888888888888888877644 6788888888888866555444


Q ss_pred             CC---CCCCCEEecccCc
Q 037889           82 EL---SLSLKWLDASNCK   96 (339)
Q Consensus        82 ~~---~~~L~~L~~~~~~   96 (339)
                      ..   +.+|+.|++++|.
T Consensus       127 ~~~~~l~~L~~L~L~~n~  144 (272)
T 3rfs_A          127 GVFDKLTNLTYLNLAHNQ  144 (272)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             HHhccCCCCCEEECCCCc
Confidence            33   3577888887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.96  E-value=1.8e-09  Score=89.39  Aligned_cols=90  Identities=29%  Similarity=0.341  Sum_probs=76.8

Q ss_pred             CCCc--ccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCcc-CchhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLV--TIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFES-LPASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~--~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      +.++  .+|..  +..+++|++|+|++|.|+.+ ..+..+++|+.|+|++|.++. +|..+..+++|++|+|++|+. ..
T Consensus        34 n~l~~~~i~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~  109 (168)
T 2ell_A           34 CKSNDGKIEGL--TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL-KD  109 (168)
T ss_dssp             CBCBTTBCSSC--CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC-CS
T ss_pred             CCCChhhHHHH--HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc-Cc
Confidence            4566  88887  78999999999999999999 789999999999999999997 788888899999999999754 55


Q ss_pred             CC--C---CCCCCCEEecccCc
Q 037889           80 LP--E---LSLSLKWLDASNCK   96 (339)
Q Consensus        80 lP--~---~~~~L~~L~~~~~~   96 (339)
                      +|  .   .+++|+.|++++|.
T Consensus       110 ~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          110 ISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             SGGGGGGSSCSCCCEEECCSSG
T ss_pred             chhHHHHhcCCCCCEEEeeCCc
Confidence            54  2   24689999998875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=1.8e-09  Score=99.96  Aligned_cols=90  Identities=23%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeec-CCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRG-CGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~-n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      |+|+.+|.   +..+++|+.|+|++ |.|+.+| ..|++|++|+.|+|++|+|+.+| ..|..|++|++|+|++|+.. .
T Consensus        19 n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~   94 (347)
T 2ifg_A           19 GALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S   94 (347)
T ss_dssp             CCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-C
T ss_pred             CCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-e
Confidence            37899998   47889999999996 9999977 57999999999999999999876 56899999999999996554 5


Q ss_pred             CCC-CC--CCCCEEecccCc
Q 037889           80 LPE-LS--LSLKWLDASNCK   96 (339)
Q Consensus        80 lP~-~~--~~L~~L~~~~~~   96 (339)
                      +|. .+  .+|+.|++.++.
T Consensus        95 ~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           95 LSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CCSTTTCSCCCCEEECCSSC
T ss_pred             eCHHHcccCCceEEEeeCCC
Confidence            554 33  238888887754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.96  E-value=9.1e-10  Score=92.14  Aligned_cols=105  Identities=20%  Similarity=0.275  Sum_probs=62.0

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCC-CCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC-C---CCCCC
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLS-SLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE-L---SLSLK   88 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~-~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~-~---~~~L~   88 (339)
                      +.++.+|+.|+|++|.++.+|. +..+. +|+.|+|++|.++.+ ..+..+++|++|+|++|... .+|. .   +++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence            3456677777777777777754 33333 777777777777766 46777777777777775543 4443 2   36677


Q ss_pred             EEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           89 WLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        89 ~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .|+++++.- ..++. ...+..++.+....++.+.
T Consensus        92 ~L~L~~N~i-~~~~~-~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           92 ELILTNNSL-VELGD-LDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             EEECCSCCC-CCGGG-GGGGGGCTTCCEEECCSSG
T ss_pred             EEECCCCcC-Ccchh-hHhhhcCCCCCEEEecCCC
Confidence            777776542 33322 0134444444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.95  E-value=2.1e-09  Score=108.06  Aligned_cols=119  Identities=21%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCC--------CCCcEEEeecCCCccCchhhh--cCccCcEEEcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCL--------SSLKELDICENNFESLPASIM--QLSRLTYLYLS   72 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l--------~~L~~L~Ls~n~l~~lP~~i~--~l~~L~~L~L~   72 (339)
                      |+++.+|..+ +..+++|++|+|++|.++.+|..+...        ++|+.|+|++|+++.+|..+.  .+++|+.|+|+
T Consensus       443 N~l~~lp~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls  521 (636)
T 4eco_A          443 NQISKFPKEL-FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS  521 (636)
T ss_dssp             SCCCSCCTHH-HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECC
T ss_pred             CccCcCCHHH-HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECC
Confidence            4455566553 445666666666666666666543322        267777777777777776665  67777777777


Q ss_pred             cCCCCccCCCCC---CCCCEEecccCc---CCCcCCCCCCCccccccccccccCCCC
Q 037889           73 KCNMLLSLPELS---LSLKWLDASNCK---RLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        73 ~c~~l~~lP~~~---~~L~~L~~~~~~---~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      +|+..+ +|..+   .+|+.|+++++.   ........|..+..++.+....++.+.
T Consensus       522 ~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             SSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             CCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence            655544 66533   456666665433   112223344455555555555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.94  E-value=2.1e-09  Score=106.89  Aligned_cols=93  Identities=24%  Similarity=0.260  Sum_probs=59.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+++.+|+.. |.++++|++|+|++|.++++ |..|+++++|++|+|++|.++.+ |..|+++++|++|+|++|...+..
T Consensus        42 n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  120 (606)
T 3vq2_A           42 NPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE  120 (606)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred             CCcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence            4555665543 66777777777777777774 55667777777777777777765 566777777777777775544433


Q ss_pred             CCCC---CCCCEEecccCc
Q 037889           81 PELS---LSLKWLDASNCK   96 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~   96 (339)
                      |..+   .+|+.|++++|.
T Consensus       121 ~~~~~~l~~L~~L~L~~n~  139 (606)
T 3vq2_A          121 SFPIGQLITLKKLNVAHNF  139 (606)
T ss_dssp             SSCCTTCTTCCEEECCSSC
T ss_pred             ccccCCCCCCCEEeCCCCc
Confidence            3322   456666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.94  E-value=2.1e-09  Score=102.99  Aligned_cols=92  Identities=26%  Similarity=0.324  Sum_probs=64.5

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecC-CCCccCc-cccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQ-EIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+|+.+|... |.++++|++|+|++| .+..+|. .+.++++|+.|+|++|+++.+| .+..+++|+.|+|++|+..+..
T Consensus       146 N~i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          146 NPIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             CCCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEEC
T ss_pred             CcccccCHHH-hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccC
Confidence            5667777765 777788888888774 4555554 5777788888888888887777 4777778888888877655555


Q ss_pred             CCCC---CCCCEEecccCc
Q 037889           81 PELS---LSLKWLDASNCK   96 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~   96 (339)
                      |..+   .+|+.|++.++.
T Consensus       224 ~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCC
T ss_pred             hhhhccCccCCEEECCCCc
Confidence            5543   566777776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.93  E-value=2.1e-09  Score=90.03  Aligned_cols=75  Identities=27%  Similarity=0.403  Sum_probs=66.6

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNML   77 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l   77 (339)
                      .|+|+.+++.. |.++++|++|+|++|+|+.+|.. +..+++|+.|+|++|+|+.+|.. +..+++|++|+|++|...
T Consensus        42 ~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           42 NNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCccccCHHH-hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            47788886665 89999999999999999998876 68999999999999999999875 899999999999996543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.7e-09  Score=100.42  Aligned_cols=116  Identities=22%  Similarity=0.233  Sum_probs=88.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCch--hhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPA--SIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~--~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      |+++.+++.. |.++++|++|+|++|.++++|.. ++++++|++|+|++|+++.+|.  .+..+++|++|++++|+.++.
T Consensus        86 n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A           86 NGINTIEEDS-FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             CccCccCHhh-cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence            5677886654 89999999999999999998876 8999999999999999999987  688999999999999876666


Q ss_pred             CC-CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889           80 LP-ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH  122 (339)
Q Consensus        80 lP-~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~  122 (339)
                      +| ..+   .+|+.|+++++......+   ..+..++.+....++.+
T Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          165 IQRKDFAGLTFLEELEIDASDLQSYEP---KSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECT---TTTTTCSEEEEEEEECS
T ss_pred             cCHHHccCCCCCCEEECCCCCcCccCH---HHHhccccCCeecCCCC
Confidence            64 333   567788888765333223   33444444444444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.93  E-value=2.6e-09  Score=102.74  Aligned_cols=91  Identities=29%  Similarity=0.264  Sum_probs=47.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecC-CCCccCc-cccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQ-EIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+|+.+|... |.++++|+.|+|++| .+..+|. .+.++++|+.|+|++|+++.+| .+..+++|+.|+|++|...+..
T Consensus       157 N~l~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~  234 (452)
T 3zyi_A          157 NPIESIPSYA-FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIR  234 (452)
T ss_dssp             CCCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEEC
T ss_pred             CCcceeCHhH-HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccC
Confidence            4455555544 555566666666553 3444443 3555555555655555555555 3555555555555555444444


Q ss_pred             CCCC---CCCCEEecccC
Q 037889           81 PELS---LSLKWLDASNC   95 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~   95 (339)
                      |..+   .+|+.|++.++
T Consensus       235 ~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          235 PGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             GGGGTTCTTCCEEECTTS
T ss_pred             cccccCccCCCEEEeCCC
Confidence            4322   34555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=1.8e-09  Score=112.04  Aligned_cols=91  Identities=21%  Similarity=0.243  Sum_probs=49.2

Q ss_pred             CCCcccCC--cCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCcc-CcEEEcccCCCCcc
Q 037889            3 RSLVTIPA--SILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSR-LTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~--~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~-L~~L~L~~c~~l~~   79 (339)
                      |+++.+|.  .  +.++++|+.|+|++|.++.+| .++.+++|+.|+|++|.++.+|..+..+++ |+.|+|++|+.. .
T Consensus       558 N~L~~ip~~~~--l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          558 NNLEEFPASAS--LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             SCCCBCCCHHH--HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             CcCCccCChhh--hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-c
Confidence            34445555  4  455555555555555555555 555555555555555555555555555555 555655554433 5


Q ss_pred             CCCCCC-----CCCEEecccCcC
Q 037889           80 LPELSL-----SLKWLDASNCKR   97 (339)
Q Consensus        80 lP~~~~-----~L~~L~~~~~~~   97 (339)
                      +|..+.     +|+.|++++|..
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCT
T ss_pred             CchhhhccccCCCCEEECcCCcC
Confidence            554331     255555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.93  E-value=1.8e-09  Score=107.12  Aligned_cols=87  Identities=20%  Similarity=0.255  Sum_probs=75.1

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccC--chhhhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESL--PASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~l--P~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      -|+|+.+|..  ++++++|+.|+|++|.|+++| .++.+++|+.|+|++|.|+.+  |..++.+++|+.|+|++|+..+.
T Consensus       472 ~N~l~~lp~~--~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          472 HNRLRALPPA--LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             SSCCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cccccccchh--hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            4788899998  899999999999999999999 899999999999999999988  89999999999999999766555


Q ss_pred             CCCC------CCCCCEEe
Q 037889           80 LPEL------SLSLKWLD   91 (339)
Q Consensus        80 lP~~------~~~L~~L~   91 (339)
                      .|..      +++|+.|+
T Consensus       549 ~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          549 EGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCTTHHHHHCTTCSEEE
T ss_pred             ccHHHHHHHHCcccCccC
Confidence            4432      34566553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.92  E-value=3.3e-09  Score=94.75  Aligned_cols=110  Identities=18%  Similarity=0.292  Sum_probs=83.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      ++++.++ .  +..+++|++|++++|.|+.+| .+..+++|+.|+|++|.++.+|. +..+++|++|+|++|+. ..+|.
T Consensus        29 ~~i~~~~-~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~  102 (263)
T 1xeu_A           29 QSVTDLV-S--QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL-KNLNG  102 (263)
T ss_dssp             SCTTSEE-C--HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC-SCCTT
T ss_pred             CCccccc-c--hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc-CCcCc
Confidence            4566666 3  567899999999999999998 68899999999999999999987 99999999999998654 44554


Q ss_pred             CC-CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           83 LS-LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        83 ~~-~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .. .+|+.|++++|. ++.++    .+..++.+....++.+.
T Consensus       103 ~~~~~L~~L~L~~N~-l~~~~----~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A          103 IPSACLSRLFLDNNE-LRDTD----SLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             CCCSSCCEEECCSSC-CSBSG----GGTTCTTCCEEECTTSC
T ss_pred             cccCcccEEEccCCc-cCCCh----hhcCcccccEEECCCCc
Confidence            33 789999998874 33332    35555566665565554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.91  E-value=1.1e-09  Score=88.95  Aligned_cols=87  Identities=23%  Similarity=0.368  Sum_probs=72.0

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCccCc--hhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFESLP--ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~lP--~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      |+++.+ +.  +..+++|++|+|++|.++. +|..+..+++|+.|++++|.++.+|  ..++.+++|++|++++|... .
T Consensus        52 n~l~~~-~~--~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~  127 (149)
T 2je0_A           52 VGLTSI-AN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-N  127 (149)
T ss_dssp             SCCCCC-TT--CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-G
T ss_pred             CCCCCc-hh--hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-c
Confidence            456666 44  7899999999999999999 8888888999999999999999876  78999999999999997554 4


Q ss_pred             CCC----C---CCCCCEEecc
Q 037889           80 LPE----L---SLSLKWLDAS   93 (339)
Q Consensus        80 lP~----~---~~~L~~L~~~   93 (339)
                      +|.    .   +++|+.|+++
T Consensus       128 ~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          128 LNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             STTHHHHHHHHCTTCCEETTB
T ss_pred             hHHHHHHHHHHCCCcccccCC
Confidence            443    2   3567777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.91  E-value=2.3e-09  Score=106.59  Aligned_cols=94  Identities=28%  Similarity=0.268  Sum_probs=80.5

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCc-c
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLL-S   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~-~   79 (339)
                      |+++.+++.. |.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+| ..++++++|++|++++|...+ .
T Consensus        66 n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           66 CEIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             CCCCEECTTT-TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CcccccCHHH-hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence            5677886655 89999999999999999996 888999999999999999999887 779999999999999987765 6


Q ss_pred             CCCCC---CCCCEEecccCcC
Q 037889           80 LPELS---LSLKWLDASNCKR   97 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~~   97 (339)
                      +|..+   .+|+.|+++++..
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCC
T ss_pred             chHhHhhcCCCCEEEccCCcc
Confidence            78754   6788888888653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.91  E-value=4e-09  Score=103.54  Aligned_cols=98  Identities=24%  Similarity=0.302  Sum_probs=60.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCc-c
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLL-S   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~-~   79 (339)
                      |+++.+++.. |.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. |+.+++|++|+|++|...+ .
T Consensus        36 n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  114 (549)
T 2z81_A           36 NKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG  114 (549)
T ss_dssp             SCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred             CccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence            3455554333 66677777777777777764 35577777777777777777766543 6777777777777765443 2


Q ss_pred             CCCC---CCCCCEEecccCcCCCcC
Q 037889           80 LPEL---SLSLKWLDASNCKRLQSL  101 (339)
Q Consensus        80 lP~~---~~~L~~L~~~~~~~l~~l  101 (339)
                      .|..   ..+|+.|++.++..+..+
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~~~~~~  139 (549)
T 2z81_A          115 VTSLFPNLTNLQTLRIGNVETFSEI  139 (549)
T ss_dssp             SSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             hhhhhhccCCccEEECCCCcccccc
Confidence            3332   246666777666544433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.91  E-value=3.8e-09  Score=105.00  Aligned_cols=117  Identities=26%  Similarity=0.227  Sum_probs=88.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      ++++.+|+.. |.++++|++|++++|.++++|..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+.+|
T Consensus       264 n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          264 HYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             CCCSSCCTTT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             CccCccCHHH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence            4677777776 8899999999999999999999999999999999999999977 5688999999999999988877777


Q ss_pred             CC----CCCCCEEecccCcCCCcCCCCCCCccccccccccccCC
Q 037889           82 EL----SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK  121 (339)
Q Consensus        82 ~~----~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~  121 (339)
                      ..    +.+|+.|+++++... .+...+..+..++.+....++.
T Consensus       343 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~  385 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSY  385 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCS
T ss_pred             hhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCC
Confidence            53    367888888876532 2221233344444444444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.90  E-value=4.3e-09  Score=94.26  Aligned_cols=112  Identities=18%  Similarity=0.135  Sum_probs=75.3

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      ++..+|..  +  .++|++|+|++|.++++|. .+.++++|++|+|++|.++.+|. .+..+++|++|+|++|...+..|
T Consensus        18 ~l~~ip~~--l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           18 NFYKIPDN--L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             CCSSCCSS--S--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CccccCCC--C--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence            35667877  3  2578888888888888655 78888888888888888887764 67888888888888876655554


Q ss_pred             CCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889           82 ELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH  122 (339)
Q Consensus        82 ~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~  122 (339)
                      ..+   .+|+.|++.++.... ++.  ..+..++.+....++.+
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~-~~~--~~~~~l~~L~~L~l~~n  134 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLAS-LEN--FPIGHLKTLKELNVAHN  134 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCC-STT--CCCTTCTTCCEEECCSS
T ss_pred             hhhcCCccccEEECCCCCccc-cCc--hhcccCCCCCEEECcCC
Confidence            433   577888887764322 221  12444444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.90  E-value=3.4e-09  Score=88.31  Aligned_cols=76  Identities=25%  Similarity=0.394  Sum_probs=66.9

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~   78 (339)
                      .|+|+.+++.. |.++++|++|+|++|+|+.+|.. +..+++|+.|+|++|+|+.+|. .+..+++|++|+|++|....
T Consensus        39 ~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           39 DNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCcCCccChhh-hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            47888886665 89999999999999999998765 6899999999999999999986 48899999999999976543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.89  E-value=2e-09  Score=97.86  Aligned_cols=87  Identities=26%  Similarity=0.376  Sum_probs=53.1

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccC---chhhhcCccCcEEEcccCCCCcc
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESL---PASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~l---P~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      .++.+|..+    .++|++|+|++|.++++|.. +.++++|+.|+|++|.++.+   |..+..+++|++|+|++|.. ..
T Consensus        18 ~l~~ip~~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~   92 (306)
T 2z66_A           18 GLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-IT   92 (306)
T ss_dssp             CCSSCCSCC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EE
T ss_pred             CcccCCCCC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-cc
Confidence            466666652    25667777777777776654 56677777777777776644   45566666677777766443 33


Q ss_pred             CCCC---CCCCCEEecccC
Q 037889           80 LPEL---SLSLKWLDASNC   95 (339)
Q Consensus        80 lP~~---~~~L~~L~~~~~   95 (339)
                      +|..   ..+|+.|+++++
T Consensus        93 l~~~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           93 MSSNFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             EEEEEETCTTCCEEECTTS
T ss_pred             ChhhcCCCCCCCEEECCCC
Confidence            4432   245666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.89  E-value=8e-09  Score=94.96  Aligned_cols=90  Identities=22%  Similarity=0.307  Sum_probs=75.2

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      .++++.+|..+    .++|++|+|++|.++++ |..+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|+ +..
T Consensus       180 ~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~  254 (330)
T 1xku_A          180 DTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVK  254 (330)
T ss_dssp             SSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSS
T ss_pred             CCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-Ccc
Confidence            35677888873    37899999999999995 778999999999999999999776 478999999999999965 557


Q ss_pred             CCCCC---CCCCEEecccCc
Q 037889           80 LPELS---LSLKWLDASNCK   96 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~   96 (339)
                      +|..+   .+|+.|++.++.
T Consensus       255 lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          255 VPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CCTTTTTCSSCCEEECCSSC
T ss_pred             CChhhccCCCcCEEECCCCc
Confidence            88754   678889998865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.89  E-value=3.5e-09  Score=103.39  Aligned_cols=81  Identities=23%  Similarity=0.227  Sum_probs=44.0

Q ss_pred             CCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCcc---CchhhhcCccCcEEEcccCCCCccCCCC----CCC
Q 037889           15 SGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFES---LPASIMQLSRLTYLYLSKCNMLLSLPEL----SLS   86 (339)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~L~~c~~l~~lP~~----~~~   86 (339)
                      ..+++|++|+|++|.+++ +|..++.+++|+.|+|++|+++.   +|..++.+++|++|+|++|+..+.+|..    +.+
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            345556666666666655 55555666666666666666553   3344555566666666655544434432    244


Q ss_pred             CCEEecccC
Q 037889           87 LKWLDASNC   95 (339)
Q Consensus        87 L~~L~~~~~   95 (339)
                      |+.|++++|
T Consensus       401 L~~L~Ls~N  409 (520)
T 2z7x_B          401 LLSLNMSSN  409 (520)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECcCC
Confidence            555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.89  E-value=3.5e-09  Score=94.89  Aligned_cols=119  Identities=22%  Similarity=0.210  Sum_probs=89.9

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      .|+++.+|... +.++++|++|+|++|.++++|. .+..+++|++|+|++|.++.+| ..+..+++|++|++++|+....
T Consensus        37 ~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  115 (276)
T 2z62_A           37 FNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL  115 (276)
T ss_dssp             TCCCCEECTTT-TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred             CCcccccCHhH-hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcccc
Confidence            36788888754 8899999999999999999654 7999999999999999999776 6789999999999999766554


Q ss_pred             CCCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .+..   +.+|+.|+++++..- .+ ..+..+..++.+....++.+.
T Consensus       116 ~~~~~~~l~~L~~L~l~~n~l~-~~-~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          116 ENFPIGHLKTLKELNVAHNLIQ-SF-KLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TTCCCTTCTTCCEEECCSSCCC-CC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             CchhcccCCCCCEEECcCCccc-ee-cCchhhccCCCCCEEECCCCC
Confidence            4433   367889999886532 21 124455556666555665554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.88  E-value=5.1e-09  Score=100.35  Aligned_cols=83  Identities=22%  Similarity=0.195  Sum_probs=55.9

Q ss_pred             CCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCCCCC---CCCC
Q 037889           14 SSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLPELS---LSLK   88 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~   88 (339)
                      +..+++|++|+|++|.++++ |..+..+++|+.|+|++|.++.+ |..++.+++|++|+|++|+..+..|..+   ++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            66777777777777777774 55677777777777777777755 4556677777777777766655555433   5666


Q ss_pred             EEecccCc
Q 037889           89 WLDASNCK   96 (339)
Q Consensus        89 ~L~~~~~~   96 (339)
                      .|+++++.
T Consensus       375 ~L~L~~N~  382 (455)
T 3v47_A          375 ELALDTNQ  382 (455)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            77776643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.88  E-value=3.5e-09  Score=98.95  Aligned_cols=120  Identities=19%  Similarity=0.220  Sum_probs=90.6

Q ss_pred             CCCCcccCCcCcCC-CCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889            2 CRSLVTIPASILSS-GLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         2 Cn~L~~lP~~~~~~-~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~   78 (339)
                      -|+|+.+|... +. ++++|++|+|++|+|+++| ..+..+++|+.|+|++|+|+.+|. .|..+++|+.|+|++|+...
T Consensus        48 ~N~l~~l~~~~-~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A           48 HNNLSRLRAEW-TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             SSCCCEECTTS-SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCCccChhh-hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence            46788898886 66 8999999999999999976 569999999999999999998875 58899999999999987766


Q ss_pred             cCCCCC---CCCCEEecccCcCCCcCCC-CCCCccccccccccccCCCC
Q 037889           79 SLPELS---LSLKWLDASNCKRLQSLPE-IPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        79 ~lP~~~---~~L~~L~~~~~~~l~~l~~-~~~~l~~l~~~~~~~l~~~~  123 (339)
                      ..|..+   .+|+.|+++++. ++.++. ....+..++.+...+++.+.
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          127 VDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             ECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            666544   688899998864 333332 12112445555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.88  E-value=3.3e-09  Score=88.68  Aligned_cols=91  Identities=20%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhh-hcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASI-MQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i-~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      |+++.+|..  ....++|++|+|++|.|+++ ..++.+++|+.|+|++|.++.+|+.+ ..+++|++|+|++|.. +.+|
T Consensus        29 n~l~~i~~~--~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~  104 (176)
T 1a9n_A           29 YKIPVIENL--GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELG  104 (176)
T ss_dssp             SCCCSCCCG--GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGG
T ss_pred             CCCchhHHh--hhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-Ccch
Confidence            567777653  33334999999999999999 67999999999999999999998665 8999999999999654 6677


Q ss_pred             C--C---CCCCCEEecccCcC
Q 037889           82 E--L---SLSLKWLDASNCKR   97 (339)
Q Consensus        82 ~--~---~~~L~~L~~~~~~~   97 (339)
                      .  .   +++|+.|++.++..
T Consensus       105 ~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A          105 DLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             GGGGGGGCTTCCEEECCSSGG
T ss_pred             hhHhhhcCCCCCEEEecCCCC
Confidence            5  2   36889999988753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.87  E-value=7.6e-09  Score=95.26  Aligned_cols=89  Identities=22%  Similarity=0.249  Sum_probs=68.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+++.+|..+    .++|++|+|++|.++.++ ..+..+++|+.|+|++|.++.+| ..+..+++|+.|+|++|+ +..+
T Consensus       182 n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l  256 (332)
T 2ft3_A          182 AKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRV  256 (332)
T ss_dssp             SBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBC
T ss_pred             CCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-Ceec
Confidence            5677788773    268888889998888854 67888888999999999888776 468888889999998864 4477


Q ss_pred             CCCC---CCCCEEecccCc
Q 037889           81 PELS---LSLKWLDASNCK   96 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~   96 (339)
                      |..+   .+|+.|+++++.
T Consensus       257 p~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          257 PAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CTTGGGCTTCCEEECCSSC
T ss_pred             ChhhhcCccCCEEECCCCC
Confidence            7644   578888888754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.87  E-value=9.7e-09  Score=94.40  Aligned_cols=88  Identities=28%  Similarity=0.405  Sum_probs=67.8

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .++.+|..  +  .++|++|+|++|.|+++|. .++++++|++|+|++|.++.+ |..+..+++|++|+|++|. +..+|
T Consensus        42 ~l~~lp~~--~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~  116 (330)
T 1xku_A           42 GLEKVPKD--L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELP  116 (330)
T ss_dssp             CCCSCCCS--C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCC
T ss_pred             CccccCcc--C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccC
Confidence            57778876  3  3678888888888888765 688888888888888888876 6788888888888888855 44566


Q ss_pred             CC-CCCCCEEecccCc
Q 037889           82 EL-SLSLKWLDASNCK   96 (339)
Q Consensus        82 ~~-~~~L~~L~~~~~~   96 (339)
                      .. +.+|+.|+++++.
T Consensus       117 ~~~~~~L~~L~l~~n~  132 (330)
T 1xku_A          117 EKMPKTLQELRVHENE  132 (330)
T ss_dssp             SSCCTTCCEEECCSSC
T ss_pred             hhhcccccEEECCCCc
Confidence            53 4678888887754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.86  E-value=1.5e-08  Score=92.63  Aligned_cols=88  Identities=19%  Similarity=0.260  Sum_probs=68.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      +.++.+| .  +..+++|++|+|++|.++.+|. +..+++|+.|+|++|.++.+| .+..+++|++|+|++|.. ..+|.
T Consensus        51 ~~i~~l~-~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~  124 (308)
T 1h6u_A           51 TGVTTIE-G--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI-TDVTP  124 (308)
T ss_dssp             SCCCCCT-T--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC-CCCGG
T ss_pred             CCccCch-h--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC-CCchh
Confidence            4567776 3  6788899999999999988877 888899999999999988887 688888899999988654 34553


Q ss_pred             --CCCCCCEEecccCc
Q 037889           83 --LSLSLKWLDASNCK   96 (339)
Q Consensus        83 --~~~~L~~L~~~~~~   96 (339)
                        .+.+|+.|++++|.
T Consensus       125 l~~l~~L~~L~l~~n~  140 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQ  140 (308)
T ss_dssp             GTTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCc
Confidence              23678888887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.86  E-value=7e-09  Score=100.20  Aligned_cols=95  Identities=26%  Similarity=0.345  Sum_probs=78.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++++.+|..+    .++|+.|+|++|+|+++ |..|.++++|+.|+|++|.++.+ |..|.++++|++|+|++|+ +..+
T Consensus        21 ~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~   95 (477)
T 2id5_A           21 KRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLI   95 (477)
T ss_dssp             CCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSC
T ss_pred             CCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCcc
Confidence            4688999883    46899999999999996 67899999999999999999977 7889999999999999965 4556


Q ss_pred             CC-C---CCCCCEEecccCcCCCcCC
Q 037889           81 PE-L---SLSLKWLDASNCKRLQSLP  102 (339)
Q Consensus        81 P~-~---~~~L~~L~~~~~~~l~~l~  102 (339)
                      |. .   +.+|+.|+++++......+
T Consensus        96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~  121 (477)
T 2id5_A           96 PLGVFTGLSNLTKLDISENKIVILLD  121 (477)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred             CcccccCCCCCCEEECCCCccccCCh
Confidence            54 3   3789999999876443333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.85  E-value=6.1e-09  Score=101.64  Aligned_cols=90  Identities=24%  Similarity=0.264  Sum_probs=70.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++|+.+|..  +.  ++|++|+|++|.++++| ..+.++++|++|+|++|+++.+ |..|+.+++|++|+|++|+.. .+
T Consensus        10 n~l~~ip~~--~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l   84 (520)
T 2z7x_B           10 NGLIHVPKD--LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI   84 (520)
T ss_dssp             SCCSSCCCS--CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EE
T ss_pred             CCccccccc--cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ec
Confidence            678888887  33  78888999999888865 5788888899999999888876 678888888999999886544 56


Q ss_pred             CC-CCCCCCEEecccCcC
Q 037889           81 PE-LSLSLKWLDASNCKR   97 (339)
Q Consensus        81 P~-~~~~L~~L~~~~~~~   97 (339)
                      |. ...+|+.|++++|..
T Consensus        85 p~~~l~~L~~L~L~~N~l  102 (520)
T 2z7x_B           85 SCHPTVNLKHLDLSFNAF  102 (520)
T ss_dssp             ECCCCCCCSEEECCSSCC
T ss_pred             CccccCCccEEeccCCcc
Confidence            65 356788888887653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.85  E-value=5.8e-09  Score=105.19  Aligned_cols=92  Identities=24%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +++.+|+.. |.++++|++|+|++|.++++ |..++++++|++|+|++|.++.+|. .|+.+++|++|+|++|+..+..|
T Consensus        36 ~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  114 (680)
T 1ziw_A           36 QLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN  114 (680)
T ss_dssp             CCCCCCGGG-GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred             CCCCcCHHH-HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence            344444432 44555555555555555553 4445555555555555555555553 35555666666666544433222


Q ss_pred             CCC---CCCCEEecccCc
Q 037889           82 ELS---LSLKWLDASNCK   96 (339)
Q Consensus        82 ~~~---~~L~~L~~~~~~   96 (339)
                      ..+   .+|+.|++++|.
T Consensus       115 ~~~~~l~~L~~L~Ls~n~  132 (680)
T 1ziw_A          115 NPFVKQKNLITLDLSHNG  132 (680)
T ss_dssp             CTTTTCTTCCEEECCSSC
T ss_pred             hHccccCCCCEEECCCCc
Confidence            322   455555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.85  E-value=3e-09  Score=100.10  Aligned_cols=91  Identities=22%  Similarity=0.321  Sum_probs=61.2

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .++.+|+.+ +..+++|++|+|++|.++.+| ..+..+++|++|+|++|.++.+| ..++.+++|++|+|++|.. ..+|
T Consensus        56 ~l~~l~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~  133 (390)
T 3o6n_A           56 TMRKLPAAL-LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP  133 (390)
T ss_dssp             EESEECTHH-HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCC
T ss_pred             chhhCChhH-hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCC
Confidence            455666664 566777777777777777754 36777777777777777777664 4467777777777777543 3455


Q ss_pred             CC----CCCCCEEecccCc
Q 037889           82 EL----SLSLKWLDASNCK   96 (339)
Q Consensus        82 ~~----~~~L~~L~~~~~~   96 (339)
                      ..    +.+|+.|+++++.
T Consensus       134 ~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A          134 RGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCCCcEEECCCCc
Confidence            32    3567777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.84  E-value=1.1e-08  Score=101.05  Aligned_cols=114  Identities=24%  Similarity=0.308  Sum_probs=86.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++|+.+|..+    .++|++|+|++|.|+++| ..+.++++|++|+|++|.++.+ |..|..+++|++|+|++|+. ..+
T Consensus        41 ~~L~~ip~~~----~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l  115 (562)
T 3a79_B           41 RNLTHVPKDL----PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNI  115 (562)
T ss_dssp             SCCCSCCTTS----CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-CEE
T ss_pred             CCCccCCCCC----CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-Ccc
Confidence            5688899873    278999999999999976 5799999999999999999977 57799999999999999664 467


Q ss_pred             CC-CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           81 PE-LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        81 P~-~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      |. .+.+|+.|+++++.. +.++ .+..+..++.+....++.+.
T Consensus       116 p~~~l~~L~~L~Ls~N~l-~~l~-~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          116 SCCPMASLRHLDLSFNDF-DVLP-VCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             CSCCCTTCSEEECCSSCC-SBCC-CCGGGGGCTTCCEEEEECSB
T ss_pred             CccccccCCEEECCCCCc-cccC-chHhhcccCcccEEecCCCc
Confidence            75 457899999988753 3222 22445555555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.84  E-value=1.6e-08  Score=92.35  Aligned_cols=78  Identities=27%  Similarity=0.397  Sum_probs=57.8

Q ss_pred             CCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC--CCCCCEEecc
Q 037889           16 GLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL--SLSLKWLDAS   93 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~--~~~L~~L~~~   93 (339)
                      .+++|++|++++|.++.+| .+..+++|+.|+|++|.++.+|. +..+++|++|+|++|+ +..+|..  +.+|+.|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECC
Confidence            4677888888888888776 57778888888888888887776 7788888888888755 4445542  3577788777


Q ss_pred             cCc
Q 037889           94 NCK   96 (339)
Q Consensus        94 ~~~   96 (339)
                      +|.
T Consensus       116 ~n~  118 (308)
T 1h6u_A          116 STQ  118 (308)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.84  E-value=1.3e-08  Score=95.71  Aligned_cols=93  Identities=19%  Similarity=0.179  Sum_probs=78.5

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++++.+|+.. |..+++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|.. ++.+++|++|++++|...+..
T Consensus        79 n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A           79 LQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CcccccChhh-ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            5677887755 89999999999999999996 45689999999999999999999976 589999999999998776665


Q ss_pred             CCCC---CCCCEEecccCc
Q 037889           81 PELS---LSLKWLDASNCK   96 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~   96 (339)
                      |..+   .+|+.|+++++.
T Consensus       158 ~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSC
T ss_pred             hhhccCCCCCCEEECCCCc
Confidence            6543   678899888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.84  E-value=4.3e-09  Score=103.32  Aligned_cols=102  Identities=23%  Similarity=0.265  Sum_probs=82.9

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCcc--CchhhhcCccCcEEEcccCCCCc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFES--LPASIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~L~~c~~l~   78 (339)
                      .|+++.+|+.. |.++++|++|+|++|.++++|.. ++++++|++|+|++|.++.  +|..++.+++|++|++++|...+
T Consensus        59 ~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~  137 (549)
T 2z81_A           59 SSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS  137 (549)
T ss_dssp             TSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             CCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc
Confidence            35677887655 89999999999999999997765 9999999999999999995  46789999999999999988788


Q ss_pred             cCCC-CC---CCCCEEecccCcCCCcCCCC
Q 037889           79 SLPE-LS---LSLKWLDASNCKRLQSLPEI  104 (339)
Q Consensus        79 ~lP~-~~---~~L~~L~~~~~~~l~~l~~~  104 (339)
                      .+|. .+   .+|+.|++.++......+..
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A          138 EIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ccCHhhhhcccccCeeeccCCcccccChhh
Confidence            8874 33   56778888876644434433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.83  E-value=1.9e-08  Score=91.21  Aligned_cols=110  Identities=22%  Similarity=0.234  Sum_probs=77.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      +.++.+|.   +..+++|++|+|++|.++.++. +..+++|+.|+|++|.++.+|. +..+++|++|+|++|.. ..+|.
T Consensus        56 ~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i-~~~~~  129 (291)
T 1h6t_A           56 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGI-SDING  129 (291)
T ss_dssp             SCCCCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCC-CCCGG
T ss_pred             CCcccChh---HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcC-CCChh
Confidence            45666653   5678888888888888888776 8888888888888888888774 88888888888888654 44554


Q ss_pred             C--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           83 L--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        83 ~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .  +.+|+.|++++|.. +.+    ..+..++.+....++.+.
T Consensus       130 l~~l~~L~~L~l~~n~l-~~~----~~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKI-TDI----TVLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             GGGCTTCCEEECCSSCC-CCC----GGGGGCTTCSEEECCSSC
T ss_pred             hcCCCCCCEEEccCCcC-Ccc----hhhccCCCCCEEEccCCc
Confidence            2  36788888887642 222    234455555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.83  E-value=9e-09  Score=102.33  Aligned_cols=93  Identities=19%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+|+.+++.. |.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..++.+++|++|+|++|...+..
T Consensus        43 n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~  121 (606)
T 3t6q_A           43 NVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID  121 (606)
T ss_dssp             CCCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred             CccCcCChhH-hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence            3444453332 55555666666666655553 45555566666666666655543 445555666666666654433322


Q ss_pred             CCC---CCCCCEEecccCc
Q 037889           81 PEL---SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~   96 (339)
                      |..   ..+|+.|+++++.
T Consensus       122 ~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A          122 FIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             GSCCTTCTTCCEEECCSSC
T ss_pred             cchhccCCcccEEECCCCc
Confidence            222   2445555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.83  E-value=1.5e-08  Score=93.22  Aligned_cols=89  Identities=22%  Similarity=0.356  Sum_probs=70.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      +.++.+|..+    .++|++|+|++|.++++ |..+.++++|++|+|++|.++.+ |..++.+++|++|+|++|.. ..+
T Consensus        43 ~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l  117 (332)
T 2ft3_A           43 LGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEI  117 (332)
T ss_dssp             SCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSC
T ss_pred             CCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-Ccc
Confidence            4577888773    36888999999999886 45789999999999999999876 67888999999999998654 466


Q ss_pred             CCC-CCCCCEEecccCc
Q 037889           81 PEL-SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~-~~~L~~L~~~~~~   96 (339)
                      |.. +.+|+.|++.++.
T Consensus       118 ~~~~~~~L~~L~l~~n~  134 (332)
T 2ft3_A          118 PPNLPSSLVELRIHDNR  134 (332)
T ss_dssp             CSSCCTTCCEEECCSSC
T ss_pred             CccccccCCEEECCCCc
Confidence            653 4788888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.83  E-value=1.3e-08  Score=100.60  Aligned_cols=82  Identities=27%  Similarity=0.176  Sum_probs=38.5

Q ss_pred             CCCCCCccEEEeecCCCCccC---ccccCCCCCcEEEeecCCCcc-Cchh-hhcCccCcEEEcccCCCCccCCCCC-CCC
Q 037889           14 SSGLSSLDRLDLRGCGLTAIP---QEIGCLSSLKELDICENNFES-LPAS-IMQLSRLTYLYLSKCNMLLSLPELS-LSL   87 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP---~~i~~l~~L~~L~Ls~n~l~~-lP~~-i~~l~~L~~L~L~~c~~l~~lP~~~-~~L   87 (339)
                      +.++++|++|+|++|.++.+|   ..++.+++|+.|+|++|.++. +|.. +..+++|+.|+|++|+..+.+|..+ .+|
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L  452 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV  452 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTC
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcC
Confidence            444444445555444444332   234444445555555554443 4432 3444455555555544444444433 355


Q ss_pred             CEEecccC
Q 037889           88 KWLDASNC   95 (339)
Q Consensus        88 ~~L~~~~~   95 (339)
                      +.|++++|
T Consensus       453 ~~L~L~~N  460 (562)
T 3a79_B          453 KVLDLHNN  460 (562)
T ss_dssp             SEEECCSS
T ss_pred             CEEECCCC
Confidence            55555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.83  E-value=2.2e-09  Score=110.20  Aligned_cols=83  Identities=30%  Similarity=0.431  Sum_probs=43.0

Q ss_pred             CCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCC
Q 037889           14 SSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLK   88 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~   88 (339)
                      +.++++|++|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..++.+++|++|+|++|+..+.+|..+   .+|+
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            4455555555555555543 4555555555555555555555 445555555555555555555554555432   3455


Q ss_pred             EEecccCc
Q 037889           89 WLDASNCK   96 (339)
Q Consensus        89 ~L~~~~~~   96 (339)
                      .|++++|.
T Consensus       494 ~L~L~~N~  501 (768)
T 3rgz_A          494 WISLSNNR  501 (768)
T ss_dssp             EEECCSSC
T ss_pred             EEEccCCc
Confidence            55555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.82  E-value=6.8e-09  Score=94.33  Aligned_cols=117  Identities=26%  Similarity=0.278  Sum_probs=84.1

Q ss_pred             CCCcccCC-cCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCcc--CchhhhcCccCcEEEcccCCCCc
Q 037889            3 RSLVTIPA-SILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFES--LPASIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         3 n~L~~lP~-~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~L~~c~~l~   78 (339)
                      |+++.+|. .. +..+++|++|++++|.+.. .|..+..+++|+.|+|++|.++.  +|..+..+++|++|+|++|+..+
T Consensus       111 n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  189 (306)
T 2z66_A          111 SNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  189 (306)
T ss_dssp             SEEESSTTTTT-TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             Ccccccccchh-hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence            45566665 22 7888999999999999887 56678889999999999999875  78888899999999999877766


Q ss_pred             cCCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           79 SLPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        79 ~lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      ..|..+   ++|+.|+++++.. ..++.  ..+..++.+...+++.+.
T Consensus       190 ~~~~~~~~l~~L~~L~L~~N~l-~~~~~--~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          190 LSPTAFNSLSSLQVLNMSHNNF-FSLDT--FPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCC-SBCCS--GGGTTCTTCCEEECTTSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcc-CccCh--hhccCcccCCEeECCCCC
Confidence            656544   5788888887653 22221  234444555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.82  E-value=3.9e-09  Score=105.19  Aligned_cols=91  Identities=22%  Similarity=0.351  Sum_probs=58.8

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .++.+|+.+ +.++++|++|+|++|.|+.+| ..++.+++|+.|+|++|.++.+|+ .|+.+++|++|+|++|... .+|
T Consensus        62 ~l~~lp~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~  139 (597)
T 3oja_B           62 TMRKLPAAL-LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP  139 (597)
T ss_dssp             EESEECTHH-HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             CCCCcCHHH-HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCC
Confidence            355566654 566777777777777777754 367777777777777777776653 4567777777777775444 444


Q ss_pred             C-C---CCCCCEEecccCc
Q 037889           82 E-L---SLSLKWLDASNCK   96 (339)
Q Consensus        82 ~-~---~~~L~~L~~~~~~   96 (339)
                      . .   +.+|+.|++++|.
T Consensus       140 ~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B          140 RGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHhccCCCCCEEEeeCCc
Confidence            3 2   3566777776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.82  E-value=1.8e-08  Score=97.15  Aligned_cols=91  Identities=31%  Similarity=0.444  Sum_probs=65.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+++.+| .  ++++++|++|++++|.++++|..+   .+|++|++++|.++.+| .++.+++|++|++++|.. ..+|.
T Consensus       141 n~l~~lp-~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~  212 (454)
T 1jl5_A          141 NQLEKLP-E--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPD  212 (454)
T ss_dssp             SCCSSCC-C--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCC
T ss_pred             CCCCCCc-c--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCC
Confidence            4566666 3  667777777777777777776644   46777777777777777 578888888888888654 45777


Q ss_pred             CCCCCCEEecccCcCCCcCC
Q 037889           83 LSLSLKWLDASNCKRLQSLP  102 (339)
Q Consensus        83 ~~~~L~~L~~~~~~~l~~l~  102 (339)
                      .+.+|+.|++++|. ++.++
T Consensus       213 ~~~~L~~L~l~~n~-l~~lp  231 (454)
T 1jl5_A          213 LPLSLESIVAGNNI-LEELP  231 (454)
T ss_dssp             CCTTCCEEECCSSC-CSSCC
T ss_pred             CcCcccEEECcCCc-CCccc
Confidence            77788888888764 33444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.81  E-value=1.3e-08  Score=90.83  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=84.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      +.++.+| .  +..+++|++|+|++|.|+++|. +..+++|+.|+|++|+++.+|....  ++|++|+|++|.. ..+|.
T Consensus        51 n~i~~l~-~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~~~  123 (263)
T 1xeu_A           51 SNIQSLA-G--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNEL-RDTDS  123 (263)
T ss_dssp             SCCCCCT-T--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCC-SBSGG
T ss_pred             CCcccch-H--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCcc-CCChh
Confidence            5678888 4  7889999999999999999888 9999999999999999999985433  8999999999654 44664


Q ss_pred             --CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           83 --LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        83 --~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                        .+.+|+.|+++++. ++.++    .+..++.+....++.+.
T Consensus       124 l~~l~~L~~L~Ls~N~-i~~~~----~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNK-LKSIV----MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             GTTCTTCCEEECTTSC-CCBCG----GGGGCTTCCEEECTTSC
T ss_pred             hcCcccccEEECCCCc-CCCCh----HHccCCCCCEEECCCCc
Confidence              24789999998865 33332    45556666666665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.81  E-value=1.6e-09  Score=99.02  Aligned_cols=81  Identities=23%  Similarity=0.268  Sum_probs=53.6

Q ss_pred             CCCCccEEEeecCCCCc-cCccc--cCCCCCcEEEeecCCCccCchhhhcC-----ccCcEEEcccCCCCccCCCCC---
Q 037889           16 GLSSLDRLDLRGCGLTA-IPQEI--GCLSSLKELDICENNFESLPASIMQL-----SRLTYLYLSKCNMLLSLPELS---   84 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~-lP~~i--~~l~~L~~L~Ls~n~l~~lP~~i~~l-----~~L~~L~L~~c~~l~~lP~~~---   84 (339)
                      ++++|++|+|++|.+++ +|..+  ..+++|++|+|++|+++.+|..++.+     ++|++|+|++|+..+..|..+   
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            46677777777777764 66665  67777777777777777666666665     677777777765554444433   


Q ss_pred             CCCCEEecccCc
Q 037889           85 LSLKWLDASNCK   96 (339)
Q Consensus        85 ~~L~~L~~~~~~   96 (339)
                      .+|+.|+++++.
T Consensus       173 ~~L~~L~Ls~N~  184 (312)
T 1wwl_A          173 PALSTLDLSDNP  184 (312)
T ss_dssp             SSCCEEECCSCT
T ss_pred             CCCCEEECCCCC
Confidence            566667776655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.81  E-value=1.8e-08  Score=100.47  Aligned_cols=93  Identities=19%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCchh-hhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      +.|+.+|+.. |..+++|++|+|++|.|+.+|. .++++++|++|+|++|.++.+|.. ++.+++|++|+|++|...+..
T Consensus        85 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  163 (597)
T 3oja_B           85 LQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  163 (597)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence            5677887754 8999999999999999999654 579999999999999999999876 589999999999998777766


Q ss_pred             CCCC---CCCCEEecccCc
Q 037889           81 PELS---LSLKWLDASNCK   96 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~   96 (339)
                      |..+   .+|+.|+++++.
T Consensus       164 ~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          164 DDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             TTTTTTCTTCCEEECTTSC
T ss_pred             hhhhhcCCcCcEEECcCCC
Confidence            6544   678888888764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.78  E-value=3.5e-08  Score=91.06  Aligned_cols=94  Identities=23%  Similarity=0.342  Sum_probs=69.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      +.++.+|.   +..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+..+++|++|++++|... .+|.
T Consensus        54 ~~i~~~~~---~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~  127 (347)
T 4fmz_A           54 EKVASIQG---IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DISP  127 (347)
T ss_dssp             SCCCCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCGG
T ss_pred             Cccccchh---hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-Cchh
Confidence            34556654   5678888888888888888777 888888888888888888876 5888888888888886543 4443


Q ss_pred             --CCCCCCEEecccCcCCCcCC
Q 037889           83 --LSLSLKWLDASNCKRLQSLP  102 (339)
Q Consensus        83 --~~~~L~~L~~~~~~~l~~l~  102 (339)
                        ...+|+.|++.+|..+..++
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~  149 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLS  149 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCG
T ss_pred             hccCCceeEEECCCCCCccccc
Confidence              23678888888876555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.78  E-value=1.3e-08  Score=92.82  Aligned_cols=93  Identities=13%  Similarity=0.059  Sum_probs=58.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCc---cC--ccccCCCCCcEEEeecCCCccCchh----hhcCccCcEEEccc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTA---IP--QEIGCLSSLKELDICENNFESLPAS----IMQLSRLTYLYLSK   73 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~---lP--~~i~~l~~L~~L~Ls~n~l~~lP~~----i~~l~~L~~L~L~~   73 (339)
                      |++..+|... +..+++|++|+|++|++.+   +|  ..++.+++|++|+|++|+++.+|..    ++.+++|++|+|++
T Consensus       155 n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          155 AHSPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             CSSCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred             CCcchhhHHH-hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence            4455555443 6667777777777777654   32  2235667777777777777665542    45667777777777


Q ss_pred             CCCCccCCCCC------CCCCEEecccCc
Q 037889           74 CNMLLSLPELS------LSLKWLDASNCK   96 (339)
Q Consensus        74 c~~l~~lP~~~------~~L~~L~~~~~~   96 (339)
                      |...+..|..+      ++|+.|++++|.
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCCCC
Confidence            66665555432      467777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.77  E-value=1.9e-08  Score=93.42  Aligned_cols=99  Identities=30%  Similarity=0.286  Sum_probs=62.6

Q ss_pred             CCCCcccCCcCcCCCCC-CccEEEeecCCCCccCccccCCCCCcEEEeec-CCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889            2 CRSLVTIPASILSSGLS-SLDRLDLRGCGLTAIPQEIGCLSSLKELDICE-NNFESLPA-SIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~-~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~-n~l~~lP~-~i~~l~~L~~L~L~~c~~l~   78 (339)
                      +++++.+|... |..+. .++.|+|++|+|+++|..+....+|+.|++++ |.++.+|. .|..+++|+.|+|++| .+.
T Consensus       138 ~~~i~~l~~~~-f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~  215 (350)
T 4ay9_X          138 NINIHTIERNS-FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIH  215 (350)
T ss_dssp             CTTCCEECTTS-STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCC
T ss_pred             ccccccccccc-hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcC
Confidence            45566666654 44443 46667777777777766666666677777753 55667764 3566777777777764 344


Q ss_pred             cCCC-CCCCCCEEecccCcCCCcCC
Q 037889           79 SLPE-LSLSLKWLDASNCKRLQSLP  102 (339)
Q Consensus        79 ~lP~-~~~~L~~L~~~~~~~l~~l~  102 (339)
                      .+|. .+.+|+.|.+.++..++.+|
T Consensus       216 ~lp~~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          216 SLPSYGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             CCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred             ccChhhhccchHhhhccCCCcCcCC
Confidence            5554 45667777776666666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.77  E-value=3.3e-08  Score=98.96  Aligned_cols=83  Identities=25%  Similarity=0.302  Sum_probs=56.1

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      .+.|+.+|..+  .  ++|++|+|++|.|+.+|.   .+++|+.|+|++|+|+.+|.   .+++|++|+|++| .+..+|
T Consensus        49 ~n~L~~lp~~l--~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~  117 (622)
T 3g06_A           49 ESGLTTLPDCL--P--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLP  117 (622)
T ss_dssp             SSCCSCCCSCC--C--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCC
T ss_pred             CCCcCccChhh--C--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCC
Confidence            46778888873  2  678888888888887777   46777777887777777775   5566777777664 334455


Q ss_pred             CCCCCCCEEecccC
Q 037889           82 ELSLSLKWLDASNC   95 (339)
Q Consensus        82 ~~~~~L~~L~~~~~   95 (339)
                      ..+.+|+.|++++|
T Consensus       118 ~~l~~L~~L~L~~N  131 (622)
T 3g06_A          118 ALPSGLCKLWIFGN  131 (622)
T ss_dssp             CCCTTCCEEECCSS
T ss_pred             CCCCCcCEEECCCC
Confidence            55555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.77  E-value=2.7e-08  Score=90.12  Aligned_cols=110  Identities=20%  Similarity=0.253  Sum_probs=84.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+++.+++   +.++++|++|+|++|.++.+|. +..+++|+.|+|++|.++.+| .+..+++|+.|++++|+.. .++.
T Consensus        78 n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~  151 (291)
T 1h6t_A           78 NKLTDIKP---LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DITV  151 (291)
T ss_dssp             SCCCCCGG---GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CCGG
T ss_pred             CccCCCcc---cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCC-cchh
Confidence            56666665   5789999999999999999876 999999999999999999986 6899999999999997554 4453


Q ss_pred             --CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           83 --LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        83 --~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                        .+.+|+.|++++|. ++.++.    +..++.+....++.+.
T Consensus       152 l~~l~~L~~L~L~~N~-l~~~~~----l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQ-ISDIVP----LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             GGGCTTCSEEECCSSC-CCCCGG----GTTCTTCCEEECCSSC
T ss_pred             hccCCCCCEEEccCCc-cccchh----hcCCCccCEEECCCCc
Confidence              24789999999874 333322    5555555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.77  E-value=2.4e-08  Score=99.75  Aligned_cols=109  Identities=23%  Similarity=0.237  Sum_probs=75.5

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      +.|..+|.   +..+++|+.|+|++|.|..+|. +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|... .+|.
T Consensus        53 n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l~~  126 (605)
T 1m9s_A           53 SDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS-DING  126 (605)
T ss_dssp             CCCCCCTT---GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC-CCGG
T ss_pred             CCCCCChH---HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC-CCcc
Confidence            45666663   6778888899998888888776 888888888888888888877 6888888888888886544 4554


Q ss_pred             C--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889           83 L--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH  122 (339)
Q Consensus        83 ~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~  122 (339)
                      .  +.+|+.|++++|.. ..+    ..+..++.|....++.+
T Consensus       127 l~~l~~L~~L~Ls~N~l-~~l----~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKI-TDI----TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             GGGCTTCSEEECCSSCC-CCC----GGGGSCTTCSEEECCSS
T ss_pred             ccCCCccCEEECCCCcc-CCc----hhhcccCCCCEEECcCC
Confidence            2  36788888877642 222    23444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.76  E-value=3.2e-08  Score=95.52  Aligned_cols=85  Identities=20%  Similarity=0.279  Sum_probs=57.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      +.++.+| .  +..+++|++|+|++|.|+++|  ++.+++|++|+|++|.++.+|  ++.+++|++|++++|+..+ +|-
T Consensus        52 n~l~~~~-~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~~  123 (457)
T 3bz5_A           52 SSITDMT-G--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LDV  123 (457)
T ss_dssp             SCCCCCT-T--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CCC
T ss_pred             CCcccCh-h--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ecC
Confidence            4566666 3  667778888888888877775  777777777777777777765  6777777777777754433 441


Q ss_pred             -CCCCCCEEecccC
Q 037889           83 -LSLSLKWLDASNC   95 (339)
Q Consensus        83 -~~~~L~~L~~~~~   95 (339)
                       .+.+|+.|+++++
T Consensus       124 ~~l~~L~~L~l~~N  137 (457)
T 3bz5_A          124 SQNPLLTYLNCARN  137 (457)
T ss_dssp             TTCTTCCEEECTTS
T ss_pred             CCCCcCCEEECCCC
Confidence             2355666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.76  E-value=1.9e-08  Score=98.94  Aligned_cols=92  Identities=27%  Similarity=0.281  Sum_probs=53.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+++.+++.. |.++++|++|+|++|.++++ |..++++++|++|+|++|.++.+| ..|+.+++|++|++++|+ +..+
T Consensus        38 n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l  115 (570)
T 2z63_A           38 NPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASL  115 (570)
T ss_dssp             CCCCEECTTT-TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCS
T ss_pred             CccCccChhH-hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccC
Confidence            4455554433 56666666666666666664 344666666666666666666554 456666666666666643 3333


Q ss_pred             CC----CCCCCCEEecccCc
Q 037889           81 PE----LSLSLKWLDASNCK   96 (339)
Q Consensus        81 P~----~~~~L~~L~~~~~~   96 (339)
                      |.    ...+|+.|+++++.
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~  135 (570)
T 2z63_A          116 ENFPIGHLKTLKELNVAHNL  135 (570)
T ss_dssp             TTCSCTTCTTCCEEECCSSC
T ss_pred             CCccccccccccEEecCCCc
Confidence            32    12456666666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.76  E-value=2.7e-08  Score=95.30  Aligned_cols=95  Identities=22%  Similarity=0.181  Sum_probs=78.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      |+++.+++.. |.++++|++|+|++|.++++ |..++.+++|+.|+|++|+++.+ |..+..+++|++|+|++|+..+..
T Consensus       309 n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          309 NEINKIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccccChhH-hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence            5677776544 89999999999999999996 67799999999999999999977 678999999999999997655533


Q ss_pred             CCC---CCCCCEEecccCcCC
Q 037889           81 PEL---SLSLKWLDASNCKRL   98 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~~l   98 (339)
                      +..   +.+|+.|+++++...
T Consensus       388 ~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          388 DGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCBC
T ss_pred             HhHhccCCcccEEEccCCCcc
Confidence            333   367889999887643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.74  E-value=5.7e-08  Score=89.63  Aligned_cols=89  Identities=25%  Similarity=0.370  Sum_probs=76.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      ++++.+|.   +..+++|++|+|++|.++.+| .+..+++|++|++++|.++.+|. +..+++|+.|++++|.....++.
T Consensus        76 n~i~~~~~---~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~  150 (347)
T 4fmz_A           76 NQITDISP---LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP  150 (347)
T ss_dssp             SCCCCCGG---GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG
T ss_pred             Cccccchh---hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc
Confidence            45666665   578999999999999999986 59999999999999999999986 89999999999999988887775


Q ss_pred             C--CCCCCEEecccCc
Q 037889           83 L--SLSLKWLDASNCK   96 (339)
Q Consensus        83 ~--~~~L~~L~~~~~~   96 (339)
                      .  +.+|+.|++.+|.
T Consensus       151 ~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESK  166 (347)
T ss_dssp             GTTCTTCCEEECCSSC
T ss_pred             hhhCCCCcEEEecCCC
Confidence            3  4688899888865

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.73  E-value=3.4e-08  Score=98.58  Aligned_cols=109  Identities=20%  Similarity=0.224  Sum_probs=72.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+|..+|+   +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.++.+| .+..+++|+.|+|++|.... ++.
T Consensus        75 N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~  148 (605)
T 1m9s_A           75 NKLTDIKP---LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITV  148 (605)
T ss_dssp             SCCCCCGG---GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGG
T ss_pred             CCCCCChh---hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-chh
Confidence            45556654   467888888888888888876 5788888888888888888775 57788888888888765443 443


Q ss_pred             --CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCC
Q 037889           83 --LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKH  122 (339)
Q Consensus        83 --~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~  122 (339)
                        .+.+|+.|++++|... .++.    +..++.|....++.+
T Consensus       149 l~~l~~L~~L~Ls~N~l~-~~~~----l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          149 LSRLTKLDTLSLEDNQIS-DIVP----LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             GGSCTTCSEEECCSSCCC-CCGG----GTTCTTCCEEECCSS
T ss_pred             hcccCCCCEEECcCCcCC-Cchh----hccCCCCCEEECcCC
Confidence              2367788888776432 2211    444444444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.72  E-value=1.3e-08  Score=100.09  Aligned_cols=93  Identities=31%  Similarity=0.334  Sum_probs=79.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc-c
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL-S   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~-~   79 (339)
                      ++++.+|+.. |.++++|++|+|++|.++.+| ..|+++++|++|++++|+++.+|. .++.+++|++|++++|.... .
T Consensus        62 n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  140 (570)
T 2z63_A           62 CEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK  140 (570)
T ss_dssp             CCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec
Confidence            4678887765 899999999999999999965 679999999999999999999885 69999999999999987665 4


Q ss_pred             CCCCC---CCCCEEecccCc
Q 037889           80 LPELS---LSLKWLDASNCK   96 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~   96 (339)
                      +|..+   .+|+.|+++++.
T Consensus       141 lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          141 LPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             CCGGGGGCTTCCEEECTTSC
T ss_pred             ChhhhcccCCCCEEeCcCCc
Confidence            77754   678899988865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.72  E-value=2.8e-08  Score=103.06  Aligned_cols=88  Identities=19%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCC-CccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENN-FESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~-l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      +++.+|. .    .++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+ |..|+++++|++|+|++|+..+..
T Consensus        15 ~L~~vP~-l----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           15 NLTQVPQ-V----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CSSCCCS-S----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCC-C----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            4666665 2    45677777777777763 5667777777777777774 3355 556777777777777776665555


Q ss_pred             CCCC---CCCCEEecccCc
Q 037889           81 PELS---LSLKWLDASNCK   96 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~   96 (339)
                      |..+   .+|+.|++++|.
T Consensus        90 p~~~~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCG  108 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCC
T ss_pred             HhHccCCcccCEeeCcCCC
Confidence            6544   456666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.72  E-value=6e-08  Score=93.58  Aligned_cols=78  Identities=24%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             CCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC-CCCCCCCEEecc
Q 037889           15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP-ELSLSLKWLDAS   93 (339)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP-~~~~~L~~L~~~   93 (339)
                      +.+++|++|+|++|.|+++|  ++.+++|++|++++|+++.+|  ++.+++|++|++++|+..+ +| ....+|+.|++.
T Consensus        82 ~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~  156 (457)
T 3bz5_A           82 SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCH  156 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECT
T ss_pred             ccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECC
Confidence            44555555555555555553  555555555555555555554  5555555555555543333 22 122445555555


Q ss_pred             cCcC
Q 037889           94 NCKR   97 (339)
Q Consensus        94 ~~~~   97 (339)
                      +|..
T Consensus       157 ~n~~  160 (457)
T 3bz5_A          157 LNKK  160 (457)
T ss_dssp             TCSC
T ss_pred             CCCc
Confidence            5443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.72  E-value=9.4e-09  Score=100.05  Aligned_cols=55  Identities=25%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             CccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccC
Q 037889           19 SLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC   74 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c   74 (339)
                      +|++|+|++|.|+.+ |..++.+++|++|+|++|.++.+++ ++.+++|++|+|++|
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N   90 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN   90 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC
Confidence            566666666666654 3456666666666666666654443 555666666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.70  E-value=3.5e-08  Score=99.46  Aligned_cols=111  Identities=21%  Similarity=0.257  Sum_probs=83.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++|+.+|..  +.  ++|++|+|++|.++++|. .++++++|++|+|++|.++.+ |..++++++|++|+|++|+. ..+
T Consensus        14 ~~L~~ip~~--~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l   88 (680)
T 1ziw_A           14 LKLTQVPDD--LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQL   88 (680)
T ss_dssp             SCCSSCCSC--SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCC
T ss_pred             CCccccccc--cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-Ccc
Confidence            468899988  43  789999999999999765 599999999999999999977 67799999999999999754 456


Q ss_pred             CC-C---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCC
Q 037889           81 PE-L---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSK  121 (339)
Q Consensus        81 P~-~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~  121 (339)
                      |. .   ..+|+.|+++++.. ..++  +..+..+..+....++.
T Consensus        89 ~~~~~~~l~~L~~L~L~~n~l-~~~~--~~~~~~l~~L~~L~Ls~  130 (680)
T 1ziw_A           89 SDKTFAFCTNLTELHLMSNSI-QKIK--NNPFVKQKNLITLDLSH  130 (680)
T ss_dssp             CTTTTTTCTTCSEEECCSSCC-CCCC--SCTTTTCTTCCEEECCS
T ss_pred             ChhhhccCCCCCEEECCCCcc-CccC--hhHccccCCCCEEECCC
Confidence            64 3   36899999998753 3222  22344444444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.69  E-value=4.7e-08  Score=90.80  Aligned_cols=99  Identities=26%  Similarity=0.272  Sum_probs=66.1

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccC-------------------------C-CCCcEEEeecCCCc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGC-------------------------L-SSLKELDICENNFE   54 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~-------------------------l-~~L~~L~Ls~n~l~   54 (339)
                      +|+|+.+|+.+ |.++++|++|++++|.|+.+|.. +..                         + ..|+.|+|++|+|+
T Consensus        89 ~N~l~~l~~~~-f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEA-FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTS-BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchh-hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            57788887765 88888888888888887765542 111                         1 23566777777777


Q ss_pred             cCchhhhcCccCcEEEcccCCCCccCCCC----CCCCCEEecccCcCCCcCC
Q 037889           55 SLPASIMQLSRLTYLYLSKCNMLLSLPEL----SLSLKWLDASNCKRLQSLP  102 (339)
Q Consensus        55 ~lP~~i~~l~~L~~L~L~~c~~l~~lP~~----~~~L~~L~~~~~~~l~~l~  102 (339)
                      .+|..+....+|+.|++++|+.++.+|..    +.+|+.|+++++ .++.+|
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp  218 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP  218 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence            77766666667777777776777777752    256777777765 344444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.69  E-value=7e-08  Score=96.59  Aligned_cols=96  Identities=36%  Similarity=0.497  Sum_probs=76.8

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+|+.+|..     +++|++|+|++|.|+.+|.   .+++|++|+|++|+++.+|.   .+++|+.|++++|+ +..+|.
T Consensus        71 N~l~~lp~~-----l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~  138 (622)
T 3g06_A           71 NNLTSLPAL-----PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV  138 (622)
T ss_dssp             CCCSCCCCC-----CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCC
T ss_pred             CCCCCCCCc-----CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCC
Confidence            567788874     6889999999999999988   67899999999999999987   67889999999854 666888


Q ss_pred             CCCCCCEEecccCcCCCcCCCCCCCcccc
Q 037889           83 LSLSLKWLDASNCKRLQSLPEIPSSLEEV  111 (339)
Q Consensus        83 ~~~~L~~L~~~~~~~l~~l~~~~~~l~~l  111 (339)
                      .+.+|+.|++++| .+..++..+..+..|
T Consensus       139 ~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L  166 (622)
T 3g06_A          139 LPPGLQELSVSDN-QLASLPALPSELCKL  166 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCCCTTCCEE
T ss_pred             CCCCCCEEECcCC-cCCCcCCccCCCCEE
Confidence            8899999999887 445555555444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.68  E-value=2.7e-08  Score=103.08  Aligned_cols=94  Identities=24%  Similarity=0.198  Sum_probs=72.6

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCC-Ccc-CccccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGL-TAI-PQEIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l-~~l-P~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      |.|+.+++.. |.++++|++|+|++|.+ ..+ |..|+++++|++|+|++|.++.+ |..|+.+++|++|+|++|...+.
T Consensus        34 N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  112 (844)
T 3j0a_A           34 NYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA  112 (844)
T ss_dssp             CCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred             CcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence            5677775544 88888999999988854 446 67788889999999999988866 77888888999999988877766


Q ss_pred             CCCC-----CCCCCEEecccCcC
Q 037889           80 LPEL-----SLSLKWLDASNCKR   97 (339)
Q Consensus        80 lP~~-----~~~L~~L~~~~~~~   97 (339)
                      +|..     +.+|+.|++++|..
T Consensus       113 ~~~~~~~~~L~~L~~L~Ls~N~l  135 (844)
T 3j0a_A          113 VLKDGYFRNLKALTRLDLSKNQI  135 (844)
T ss_dssp             CSTTCCCSSCSSCCEEEEESCCC
T ss_pred             cccCccccccCCCCEEECCCCcc
Confidence            6542     36788888887653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.68  E-value=2.1e-10  Score=97.91  Aligned_cols=89  Identities=21%  Similarity=0.254  Sum_probs=67.3

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL   83 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~   83 (339)
                      .++.+|..  +..+++|++|+|++|.++.+| .+..+++|+.|+|++|.++.+|..+..+++|++|+|++|.. ..+|..
T Consensus        36 ~l~~l~~~--~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~~~  111 (198)
T 1ds9_A           36 PIEKMDAT--LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLSGI  111 (198)
T ss_dssp             TCCCCHHH--HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHHHH
T ss_pred             cHhhhhHH--HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCCcc
Confidence            34555555  677888888888888888888 78888888888888888888888777888888888888644 446632


Q ss_pred             --CCCCCEEecccCc
Q 037889           84 --SLSLKWLDASNCK   96 (339)
Q Consensus        84 --~~~L~~L~~~~~~   96 (339)
                        +.+|+.|+++++.
T Consensus       112 ~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHHHSSEEEESEEE
T ss_pred             ccCCCCCEEECCCCc
Confidence              2567788777753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.68  E-value=2.8e-08  Score=91.95  Aligned_cols=75  Identities=25%  Similarity=0.263  Sum_probs=64.9

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNML   77 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l   77 (339)
                      +|+|+.+|+.. |.+|++|+.|+|++|+|+++ |..|.+|++|+.|+|++|+|+.+|..+.....|+.|+|.+|+..
T Consensus        41 ~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           41 QQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CSSCCEECGGG-SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCCCcChhH-hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence            58999999765 89999999999999999996 45789999999999999999999976554444999999986543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.67  E-value=1.9e-08  Score=97.83  Aligned_cols=112  Identities=19%  Similarity=0.181  Sum_probs=80.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCcc-Cchhhh-cCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFES-LPASIM-QLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~-lP~~i~-~l~~L~~L~L~~c~~l~~   79 (339)
                      |.|+.+|..    .+++|+.|+|++|.|+.+ |..++.+++|+.|+|++|.++. .|..+. .+++|++|+|++|...+.
T Consensus       109 N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          109 NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            455556554    467899999999999985 6678889999999999999986 466665 789999999998765544


Q ss_pred             CCCC--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPEL--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                       |..  +++|+.|++++|. +..+   +..+..++.+...+++.+.
T Consensus       185 -~~~~~l~~L~~L~Ls~N~-l~~~---~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          185 -KGQVVFAKLKTLDLSSNK-LAFM---GPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             -ECCCCCTTCCEEECCSSC-CCEE---CGGGGGGTTCSEEECTTSC
T ss_pred             -cccccCCCCCEEECCCCC-CCCC---CHhHcCCCCccEEEecCCc
Confidence             433  4788999988865 2333   3345556666666665554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.66  E-value=9.6e-08  Score=92.07  Aligned_cols=86  Identities=27%  Similarity=0.342  Sum_probs=54.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+++.+| .  ++++++|++|++++|.++++|...   ++|+.|++++|.++.+| .++.+++|++|++++|+ +..+|.
T Consensus       183 n~l~~l~-~--~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~  254 (454)
T 1jl5_A          183 NQLEELP-E--LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPD  254 (454)
T ss_dssp             SCCSSCC-C--CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCS
T ss_pred             CcCCcCc-c--ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccc
Confidence            3445555 3  456666666666666666555433   35666666666666666 37777777777777744 445676


Q ss_pred             CCCCCCEEecccCc
Q 037889           83 LSLSLKWLDASNCK   96 (339)
Q Consensus        83 ~~~~L~~L~~~~~~   96 (339)
                      .+.+|+.|++++|.
T Consensus       255 ~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          255 LPPSLEALNVRDNY  268 (454)
T ss_dssp             CCTTCCEEECCSSC
T ss_pred             cccccCEEECCCCc
Confidence            66777777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.66  E-value=1.9e-08  Score=91.83  Aligned_cols=90  Identities=22%  Similarity=0.184  Sum_probs=58.7

Q ss_pred             ccCCcCcCCCCCCccEEEeecCCCCccCccccCC-----CCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889            7 TIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCL-----SSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l-----~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      .+|..+++..+++|++|+|++|.++++|..++.+     ++|++|+|++|+++.+| ..++.+++|++|+|++|+..+.+
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred             hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence            4566531267777777777777777776666665     77777777777777665 56777777777777776654431


Q ss_pred             --C-----CCCCCCCEEecccCc
Q 037889           81 --P-----ELSLSLKWLDASNCK   96 (339)
Q Consensus        81 --P-----~~~~~L~~L~~~~~~   96 (339)
                        |     ..+.+|+.|++++|.
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhccCCCCCEEECCCCc
Confidence              1     334567777776653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.65  E-value=7.3e-08  Score=95.46  Aligned_cols=88  Identities=33%  Similarity=0.451  Sum_probs=68.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+|+.+|. + . +  +|++|+|++|.|+++|.   .+++|+.|+|++|.|+.+|.   .+++|+.|+|++|+. ..+|.
T Consensus       110 N~l~~ip~-l-~-~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L-~~lp~  177 (571)
T 3cvr_A          110 NRLSTLPE-L-P-A--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL-TFLPE  177 (571)
T ss_dssp             SCCSCCCC-C-C-T--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC
T ss_pred             CCCCCcch-h-h-c--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC-CCcch
Confidence            56666776 3 2 2  88888888888888887   67889999999999998886   678999999998654 44887


Q ss_pred             CCCCCCEEecccCcCCCcCCC
Q 037889           83 LSLSLKWLDASNCKRLQSLPE  103 (339)
Q Consensus        83 ~~~~L~~L~~~~~~~l~~l~~  103 (339)
                      ...+|+.|++++|. ++.+|.
T Consensus       178 l~~~L~~L~Ls~N~-L~~lp~  197 (571)
T 3cvr_A          178 LPESLEALDVSTNL-LESLPA  197 (571)
T ss_dssp             CCTTCCEEECCSSC-CSSCCC
T ss_pred             hhCCCCEEECcCCC-CCchhh
Confidence            55789999998864 455554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.65  E-value=2.7e-08  Score=91.08  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhh-hcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASI-MQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i-~~l~~L~~L~L~~c~~l~~   79 (339)
                      |+++.++..    .+++|++|+|++|.++.+ |..++.+++|+.|+|++|.++.++ ..+ ..+++|++|+|++|.. ..
T Consensus       109 n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~  183 (317)
T 3o53_A          109 NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YD  183 (317)
T ss_dssp             SCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CE
T ss_pred             CccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cc
Confidence            455566554    367888999999998886 447888888999999999888664 445 4688899999988654 44


Q ss_pred             CCCC--CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPEL--SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~--~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      +|..  +.+|+.|++++|. ++.+   +..+..++.+....++.+.
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~-l~~l---~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          184 VKGQVVFAKLKTLDLSSNK-LAFM---GPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             EECCCCCTTCCEEECCSSC-CCEE---CGGGGGGTTCSEEECTTSC
T ss_pred             cccccccccCCEEECCCCc-CCcc---hhhhcccCcccEEECcCCc
Confidence            4543  4788888888764 2223   2335555555555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.64  E-value=1.3e-08  Score=93.19  Aligned_cols=79  Identities=24%  Similarity=0.250  Sum_probs=49.0

Q ss_pred             CCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEEec
Q 037889           14 SSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDA   92 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L~~   92 (339)
                      +..+++|++|+|++|.++.++ ..+..+++|+.|+|++|.++.+++ +..+++|++|+|++|+ +..+|.. ++|+.|++
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~-~~L~~L~l  106 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG-PSIETLHA  106 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEEC-TTCCEEEC
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccCC-CCcCEEEC
Confidence            344556777777777777754 457777777777777777765554 6677777777777654 3333322 45555555


Q ss_pred             ccC
Q 037889           93 SNC   95 (339)
Q Consensus        93 ~~~   95 (339)
                      +++
T Consensus       107 ~~n  109 (317)
T 3o53_A          107 ANN  109 (317)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.63  E-value=1.3e-07  Score=93.57  Aligned_cols=83  Identities=27%  Similarity=0.511  Sum_probs=61.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      ++|+.+|..+    +++|++|+|++|.|+.+|   ..+++|+.|+|++|+|+.+|. +..  +|++|+|++|+..+ +|.
T Consensus        69 n~L~~lp~~l----~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~  137 (571)
T 3cvr_A           69 LNLSSLPDNL----PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LPE  137 (571)
T ss_dssp             SCCSCCCSCC----CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC-CCC
T ss_pred             CCCCccCHhH----cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC-CCC
Confidence            4677788873    367888888888888888   456788888888888888876 554  78888888755443 666


Q ss_pred             CCCCCCEEecccCc
Q 037889           83 LSLSLKWLDASNCK   96 (339)
Q Consensus        83 ~~~~L~~L~~~~~~   96 (339)
                      .+.+|+.|+++++.
T Consensus       138 ~l~~L~~L~Ls~N~  151 (571)
T 3cvr_A          138 LPALLEYINADNNQ  151 (571)
T ss_dssp             CCTTCCEEECCSSC
T ss_pred             cCccccEEeCCCCc
Confidence            66777777777754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.62  E-value=1.5e-08  Score=92.40  Aligned_cols=104  Identities=22%  Similarity=0.287  Sum_probs=79.5

Q ss_pred             CCCCCCccEEEeecCCCCccCcc----ccCCCCCcEEEeecCCCccC-chhhhcC---ccCcEEEcccCCCCccCCCC-C
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQE----IGCLSSLKELDICENNFESL-PASIMQL---SRLTYLYLSKCNMLLSLPEL-S   84 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~----i~~l~~L~~L~Ls~n~l~~l-P~~i~~l---~~L~~L~L~~c~~l~~lP~~-~   84 (339)
                      +..+++|++|+|++|.++.+|..    ++.+++|++|+|++|.++.+ |+.+..+   ++|++|+|++|+.. .+|.. +
T Consensus       193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~  271 (310)
T 4glp_A          193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP  271 (310)
T ss_dssp             TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred             hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence            57899999999999999877653    57889999999999999976 8888776   69999999997655 77764 4


Q ss_pred             CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           85 LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        85 ~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .+|+.|++++|. ++.++. +   ..++.+....++.++
T Consensus       272 ~~L~~L~Ls~N~-l~~~~~-~---~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          272 AKLRVLDLSSNR-LNRAPQ-P---DELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCSCEECCSCC-CCSCCC-T---TSCCCCSCEECSSTT
T ss_pred             CCCCEEECCCCc-CCCCch-h---hhCCCccEEECcCCC
Confidence            789999999875 333332 2   334444445555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.60  E-value=2e-07  Score=89.92  Aligned_cols=81  Identities=22%  Similarity=0.298  Sum_probs=54.8

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC-CCCCCCCEEec
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP-ELSLSLKWLDA   92 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP-~~~~~L~~L~~   92 (339)
                      +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+..+..| ..+++|+.|++
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L  316 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTL  316 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred             hhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEEC
Confidence            5567777777777777777655 7777777777777777777765 6777777777777755443322 12356777777


Q ss_pred             ccCc
Q 037889           93 SNCK   96 (339)
Q Consensus        93 ~~~~   96 (339)
                      ++|.
T Consensus       317 ~~n~  320 (466)
T 1o6v_A          317 YFNN  320 (466)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            7664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.56  E-value=2.1e-09  Score=91.65  Aligned_cols=89  Identities=27%  Similarity=0.242  Sum_probs=75.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+++.+| .  +..+++|++|+|++|.|+.+|..+..+++|+.|+|++|+++.+| .+..+++|++|+|++|+.. .+|.
T Consensus        58 n~l~~l~-~--~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~  132 (198)
T 1ds9_A           58 NNIEKIS-S--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT-NWGE  132 (198)
T ss_dssp             EEESCCC-C--HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECC-CHHH
T ss_pred             CCCcccc-c--cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCC-chhH
Confidence            4566777 5  78899999999999999999998888999999999999999998 6999999999999996544 3332


Q ss_pred             -----CCCCCCEEecccCc
Q 037889           83 -----LSLSLKWLDASNCK   96 (339)
Q Consensus        83 -----~~~~L~~L~~~~~~   96 (339)
                           .+.+|+.|++.+|.
T Consensus       133 ~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          133 IDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHTTTTTCSEEEECSCH
T ss_pred             HHHHhcCCCCCEEEecCCc
Confidence                 34678888888765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.55  E-value=3.4e-07  Score=88.20  Aligned_cols=89  Identities=26%  Similarity=0.355  Sum_probs=69.7

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC-
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP-   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP-   81 (339)
                      +.+..+++   ++.+++|+.|++++|.+++++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|...+..| 
T Consensus       209 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~  283 (466)
T 1o6v_A          209 NQISDITP---LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPL  283 (466)
T ss_dssp             SCCCCCGG---GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGG
T ss_pred             Cccccccc---ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccc
Confidence            34444443   456889999999999999875 58889999999999999998876 8899999999999876554333 


Q ss_pred             CCCCCCCEEecccCc
Q 037889           82 ELSLSLKWLDASNCK   96 (339)
Q Consensus        82 ~~~~~L~~L~~~~~~   96 (339)
                      ..+.+|+.|++++|.
T Consensus       284 ~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          284 AGLTALTNLELNENQ  298 (466)
T ss_dssp             TTCTTCSEEECCSSC
T ss_pred             cCCCccCeEEcCCCc
Confidence            134788999998865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.39  E-value=5.5e-08  Score=89.23  Aligned_cols=112  Identities=25%  Similarity=0.337  Sum_probs=83.4

Q ss_pred             cCCcCcCCCCCCccEEEeecC-CCCc--cCccccCCCCCcEEEeecC-CCcc--CchhhhcCc-cCcEEEcccCC--CC-
Q 037889            8 IPASILSSGLSSLDRLDLRGC-GLTA--IPQEIGCLSSLKELDICEN-NFES--LPASIMQLS-RLTYLYLSKCN--ML-   77 (339)
Q Consensus         8 lP~~~~~~~l~~L~~L~Ls~n-~l~~--lP~~i~~l~~L~~L~Ls~n-~l~~--lP~~i~~l~-~L~~L~L~~c~--~l-   77 (339)
                      .|..  +..+++|++|+|++| .++.  +|..+..+++|+.|++++| .++.  +|..+..++ +|++|+|++|.  .. 
T Consensus       134 ~~~~--l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~  211 (336)
T 2ast_B          134 IVNT--LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK  211 (336)
T ss_dssp             HHHH--HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred             HHHH--HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence            4455  678999999999999 7885  7888999999999999999 8984  788899999 99999999984  22 


Q ss_pred             ccCCCC---CCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           78 LSLPEL---SLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        78 ~~lP~~---~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      +.+|..   .++|+.|++++|..++.  ..+..+..++.+....++.+.
T Consensus       212 ~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          212 SDLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHHHHHHCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT
T ss_pred             HHHHHHHhhCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC
Confidence            445543   47899999999875432  122344555555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.26  E-value=1.7e-07  Score=85.98  Aligned_cols=87  Identities=25%  Similarity=0.305  Sum_probs=72.3

Q ss_pred             cCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecC-CCc--cCchhhhcCccCcEEEcccC-CCCcc-CC
Q 037889            8 IPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICEN-NFE--SLPASIMQLSRLTYLYLSKC-NMLLS-LP   81 (339)
Q Consensus         8 lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n-~l~--~lP~~i~~l~~L~~L~L~~c-~~l~~-lP   81 (339)
                      +|..  +..+++|++|+|++|.++. .|..++.+++|+.|+|++| .++  .+|..+..+++|++|++++| ..... +|
T Consensus       110 ~~~~--~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          110 LHGI--LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             HHHH--HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred             HHHH--HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence            5555  6789999999999999986 7888999999999999999 788  47888999999999999998 44332 44


Q ss_pred             CC---CC-CCCEEecccCc
Q 037889           82 EL---SL-SLKWLDASNCK   96 (339)
Q Consensus        82 ~~---~~-~L~~L~~~~~~   96 (339)
                      ..   .+ +|+.|++++|.
T Consensus       188 ~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCG
T ss_pred             HHHHhcccCCCEEEeCCCc
Confidence            42   35 89999999985

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=2.1e-06  Score=76.69  Aligned_cols=65  Identities=18%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             CCCCccEEEeecCCCCcc---CccccCCCCCcEEEeecCCCccCchhhhcCc--cCcEEEcccCCCCccCC
Q 037889           16 GLSSLDRLDLRGCGLTAI---PQEIGCLSSLKELDICENNFESLPASIMQLS--RLTYLYLSKCNMLLSLP   81 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~l---P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~--~L~~L~L~~c~~l~~lP   81 (339)
                      ++++|+.|+|++|.|+.+   |..+..+++|+.|+|++|.|+.+. .+..+.  +|+.|+|++|...+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            467888899999888774   456678888999999998888773 455555  88888888887777666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.09  E-value=6.7e-07  Score=83.87  Aligned_cols=110  Identities=16%  Similarity=0.253  Sum_probs=77.0

Q ss_pred             CCCCCCccEEEeecCCCC------ccCccccCCCCCcEEEeecCCC-----ccCchhhhcCccCcEEEcccCCCCcc---
Q 037889           14 SSGLSSLDRLDLRGCGLT------AIPQEIGCLSSLKELDICENNF-----ESLPASIMQLSRLTYLYLSKCNMLLS---   79 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~------~lP~~i~~l~~L~~L~Ls~n~l-----~~lP~~i~~l~~L~~L~L~~c~~l~~---   79 (339)
                      +..+++|++|+|++|.|.      -+|..+..+++|+.|+|++|.+     ..+|..+..+++|++|+|++|.....   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            556789999999999988      2455788899999999999998     56788889999999999999876544   


Q ss_pred             -CCCC-----CCCCCEEecccCcCCCc-CCCCCCCc-cccccccccccCCCC
Q 037889           80 -LPEL-----SLSLKWLDASNCKRLQS-LPEIPSSL-EEVDASVFEKLSKHS  123 (339)
Q Consensus        80 -lP~~-----~~~L~~L~~~~~~~l~~-l~~~~~~l-~~l~~~~~~~l~~~~  123 (339)
                       +|..     .++|+.|++++|..-.. +...+..+ .+++.+....++.+.
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence             4442     56789999988753220 00122233 234455555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=2.2e-05  Score=71.84  Aligned_cols=26  Identities=15%  Similarity=0.114  Sum_probs=15.2

Q ss_pred             cccCCcCcCCCCCCccEEEeecCCCCc
Q 037889            6 VTIPASILSSGLSSLDRLDLRGCGLTA   32 (339)
Q Consensus         6 ~~lP~~~~~~~l~~L~~L~Ls~n~l~~   32 (339)
                      +.+++.+ |.++++|+.|++++|.+..
T Consensus       113 ~~I~~~a-F~~~~~L~~l~l~~n~i~~  138 (329)
T 3sb4_A          113 KNIEDAA-FKGCDNLKICQIRKKTAPN  138 (329)
T ss_dssp             CEECTTT-TTTCTTCCEEEBCCSSCCE
T ss_pred             cchhHHH-hhcCcccceEEcCCCCccc
Confidence            3455555 6666666666666665433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.02  E-value=1.3e-06  Score=81.90  Aligned_cols=79  Identities=15%  Similarity=0.155  Sum_probs=65.9

Q ss_pred             CCccEEEeecCCCCc--cC---ccccCCCCCcEEEeecCCCc------cCchhhhcCccCcEEEcccCCCC----ccCCC
Q 037889           18 SSLDRLDLRGCGLTA--IP---QEIGCLSSLKELDICENNFE------SLPASIMQLSRLTYLYLSKCNML----LSLPE   82 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~--lP---~~i~~l~~L~~L~Ls~n~l~------~lP~~i~~l~~L~~L~L~~c~~l----~~lP~   82 (339)
                      ++|++|+|++|.+..  +|   ..+..+++|+.|+|++|+++      .+|..+..+++|++|+|++|...    ..+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            899999999999973  66   56888999999999999998      24558889999999999998763    56664


Q ss_pred             C---CCCCCEEecccCc
Q 037889           83 L---SLSLKWLDASNCK   96 (339)
Q Consensus        83 ~---~~~L~~L~~~~~~   96 (339)
                      .   .++|+.|++++|.
T Consensus       239 ~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HGGGCTTCCEEECTTCC
T ss_pred             HHccCCCcCEEECCCCC
Confidence            3   3689999999876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.90  E-value=3.1e-06  Score=78.68  Aligned_cols=83  Identities=20%  Similarity=0.230  Sum_probs=56.2

Q ss_pred             CCCCCCccEEEeecCCCCccC-----ccccCCC-CCcEEEeecCCCccC-chhhhcC-----ccCcEEEcccCCCCccCC
Q 037889           14 SSGLSSLDRLDLRGCGLTAIP-----QEIGCLS-SLKELDICENNFESL-PASIMQL-----SRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP-----~~i~~l~-~L~~L~Ls~n~l~~l-P~~i~~l-----~~L~~L~L~~c~~l~~lP   81 (339)
                      +...++|++|+|++|.|+.++     ..+..++ +|+.|+|++|.++.. +..+..+     ++|++|+|++|......+
T Consensus        18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            444556888888888887765     4566777 788888888887755 4555554     778888888776544333


Q ss_pred             C--------CCCCCCEEecccCc
Q 037889           82 E--------LSLSLKWLDASNCK   96 (339)
Q Consensus        82 ~--------~~~~L~~L~~~~~~   96 (339)
                      .        .+.+|+.|++++|.
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHHHHhCCCCccEEECcCCc
Confidence            2        11567777777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.82  E-value=5e-06  Score=77.30  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=69.4

Q ss_pred             CCCcccCC----cCcCCCCC-CccEEEeecCCCCcc-CccccCC-----CCCcEEEeecCCCccCc-hh----hhcC-cc
Q 037889            3 RSLVTIPA----SILSSGLS-SLDRLDLRGCGLTAI-PQEIGCL-----SSLKELDICENNFESLP-AS----IMQL-SR   65 (339)
Q Consensus         3 n~L~~lP~----~~~~~~l~-~L~~L~Ls~n~l~~l-P~~i~~l-----~~L~~L~Ls~n~l~~lP-~~----i~~l-~~   65 (339)
                      |.++..+.    .. +..++ +|++|+|++|.|... +..+..+     ++|+.|+|++|.++..+ ..    +..+ ++
T Consensus        32 n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~  110 (362)
T 3goz_A           32 NNLYSISTVELIQA-FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT  110 (362)
T ss_dssp             SCGGGSCHHHHHHH-HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             CCCChHHHHHHHHH-HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCC
Confidence            45666664    32 66777 899999999999884 5556664     99999999999998654 43    4445 89


Q ss_pred             CcEEEcccCCCCccCCCC--------CCCCCEEecccCc
Q 037889           66 LTYLYLSKCNMLLSLPEL--------SLSLKWLDASNCK   96 (339)
Q Consensus        66 L~~L~L~~c~~l~~lP~~--------~~~L~~L~~~~~~   96 (339)
                      |++|+|++|.....-+..        ..+|+.|++++|.
T Consensus       111 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A          111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             ccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            999999997754443321        3589999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.66  E-value=0.0001  Score=61.29  Aligned_cols=90  Identities=16%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             ccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCC-CccCc-hhhhcC----ccCcEEEcccCCCCcc
Q 037889            7 TIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENN-FESLP-ASIMQL----SRLTYLYLSKCNMLLS   79 (339)
Q Consensus         7 ~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~-l~~lP-~~i~~l----~~L~~L~L~~c~~l~~   79 (339)
                      .+|..  ...--.|+.|||++|.|+.. -..+..+++|+.|+|++|. ++.-- ..+..+    ++|++|+|++|..+..
T Consensus        52 ~LP~~--~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           52 HLPTG--PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GSCCC--STTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cCCcc--cCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            45654  22234799999999998762 2457889999999999996 66321 245554    4799999999986542


Q ss_pred             -----CCCCCCCCCEEecccCcCCC
Q 037889           80 -----LPELSLSLKWLDASNCKRLQ   99 (339)
Q Consensus        80 -----lP~~~~~L~~L~~~~~~~l~   99 (339)
                           +- ..++|+.|++.+|..++
T Consensus       130 ~Gl~~L~-~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          130 KGIIALH-HFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHHHGG-GCTTCCEEEEESCTTCC
T ss_pred             HHHHHHh-cCCCCCEEECCCCCCCC
Confidence                 32 24789999999988654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.00012  Score=67.00  Aligned_cols=63  Identities=19%  Similarity=0.245  Sum_probs=46.9

Q ss_pred             CCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCc-hhhhcCccCc-EEEcccCCCCccCCC
Q 037889           17 LSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLP-ASIMQLSRLT-YLYLSKCNMLLSLPE   82 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~-~L~L~~c~~l~~lP~   82 (339)
                      +++|+.|+|++|+++.||.. |.++++|+.|+|..| ++.|+ ..|.++++|+ .|++.+  .+..++.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~  290 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF  290 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEch
Confidence            56788888888888887654 778888888888877 77776 4577888888 888875  4455553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.52  E-value=0.00016  Score=68.37  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=31.6

Q ss_pred             CcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcc
Q 037889            5 LVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLS   72 (339)
Q Consensus         5 L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~   72 (339)
                      ++.++..+ |.+ .+|+.+.|.+ .++.|+ ..|.++++|+.++|+.|+++.+|.......+|+.+.|.
T Consensus       146 i~~I~~~a-F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          146 LKSIGDMA-FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             CCEECTTT-TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred             ccEECHHh-cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence            44444444 444 2455555543 444443 33555555555555555555555333333455555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.47  E-value=1.2e-05  Score=76.76  Aligned_cols=81  Identities=31%  Similarity=0.346  Sum_probs=64.0

Q ss_pred             CCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCccC-chhhhc-----CccCcEEEcccCCCCc----cC
Q 037889           16 GLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFESL-PASIMQ-----LSRLTYLYLSKCNMLL----SL   80 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~l-P~~i~~-----l~~L~~L~L~~c~~l~----~l   80 (339)
                      ..++|++|+|++|.++.     +|..+..+++|+.|+|++|.++.. +..+..     .++|++|+|++|+...    .+
T Consensus       311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  390 (461)
T 1z7x_W          311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  390 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence            34689999999999885     467788889999999999998854 333432     6799999999987664    66


Q ss_pred             CCC---CCCCCEEecccCc
Q 037889           81 PEL---SLSLKWLDASNCK   96 (339)
Q Consensus        81 P~~---~~~L~~L~~~~~~   96 (339)
                      |..   .++|+.|++++|.
T Consensus       391 ~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          391 AATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHhCCCccEEECCCCC
Confidence            754   4789999998875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.45  E-value=2.4e-05  Score=74.67  Aligned_cols=79  Identities=27%  Similarity=0.405  Sum_probs=40.8

Q ss_pred             CCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCccC-----chh-hhcCccCcEEEcccCCCCcc----CC
Q 037889           17 LSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFESL-----PAS-IMQLSRLTYLYLSKCNMLLS----LP   81 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~l-----P~~-i~~l~~L~~L~L~~c~~l~~----lP   81 (339)
                      +++|++|+|++|.++.     +|..+..+++|+.|+|++|.++..     ++. +..+++|++|++++|.....    +|
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  277 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC  277 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence            3456666666666654     355555566666666666655532     111 22355666666665533321    33


Q ss_pred             CC---CCCCCEEecccC
Q 037889           82 EL---SLSLKWLDASNC   95 (339)
Q Consensus        82 ~~---~~~L~~L~~~~~   95 (339)
                      ..   ..+|+.|+++++
T Consensus       278 ~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          278 RVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHCTTCCEEECTTC
T ss_pred             HHHhhCCCcceEECCCC
Confidence            32   245555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.31  E-value=5.4e-05  Score=70.84  Aligned_cols=59  Identities=15%  Similarity=0.157  Sum_probs=33.2

Q ss_pred             CCCccEEEeecCCCCcc-Ccc----c-cCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCC
Q 037889           17 LSSLDRLDLRGCGLTAI-PQE----I-GCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCN   75 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~l-P~~----i-~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~   75 (339)
                      +++|+.|+|++|.|... ...    + ...++|+.|+|++|.|+.     ++..+..+++|++|+|++|.
T Consensus       125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred             HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence            44566666666666542 111    1 234566666666666653     34445556666666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.25  E-value=8.9e-05  Score=73.01  Aligned_cols=58  Identities=12%  Similarity=0.147  Sum_probs=26.4

Q ss_pred             CCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccC
Q 037889           17 LSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKC   74 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c   74 (339)
                      +++|++|+|++|.+.+     ++..+..+++|+.|+|++|.++     .++..+..+++|+.|+|++|
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            4455555555554322     1122334445555555555543     22333344555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.18  E-value=0.00055  Score=53.96  Aligned_cols=53  Identities=26%  Similarity=0.320  Sum_probs=41.1

Q ss_pred             cEEEeecCCCC--ccCccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCC
Q 037889           21 DRLDLRGCGLT--AIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCN   75 (339)
Q Consensus        21 ~~L~Ls~n~l~--~lP~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~   75 (339)
                      ..++.+++.++  .+|..+.  .+|+.|+|++|+|+.||. .|..+++|+.|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            46788888888  7887654  468888888888888874 45678888888888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.10  E-value=0.0013  Score=62.11  Aligned_cols=74  Identities=23%  Similarity=0.235  Sum_probs=53.9

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      ++++.+++.+ |.+ .+|+.+.|..+ ++.|+.. |.+ .+|+.+.|.. .++.|+ ..|.++++|+.++|++| .+..+
T Consensus       122 ~~i~~I~~~a-F~~-~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I  195 (401)
T 4fdw_A          122 NSVKSIPKDA-FRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKL  195 (401)
T ss_dssp             TTCCEECTTT-TTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEE
T ss_pred             CccCEehHhh-ccc-CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEe
Confidence            4567777776 666 47999988765 7777654 555 5799999885 777776 56888899999999874 45555


Q ss_pred             CC
Q 037889           81 PE   82 (339)
Q Consensus        81 P~   82 (339)
                      |.
T Consensus       196 ~~  197 (401)
T 4fdw_A          196 PA  197 (401)
T ss_dssp             CT
T ss_pred             ch
Confidence            54

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.06  E-value=6.7e-05  Score=73.86  Aligned_cols=81  Identities=16%  Similarity=0.088  Sum_probs=45.5

Q ss_pred             CCCCccEEEee--c----CCCCccC------ccccCCCCCcEEEeecCCCc-cCchhhhc-CccCcEEEcccCCCCccCC
Q 037889           16 GLSSLDRLDLR--G----CGLTAIP------QEIGCLSSLKELDICENNFE-SLPASIMQ-LSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus        16 ~l~~L~~L~Ls--~----n~l~~lP------~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~-l~~L~~L~L~~c~~l~~lP   81 (339)
                      .+++|+.|+|+  +    +.++..|      ..+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|.....-+
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence            35677777777  3    4555333      2255666777777765 444 22334443 6677777777665432222


Q ss_pred             ----CCCCCCCEEecccCcC
Q 037889           82 ----ELSLSLKWLDASNCKR   97 (339)
Q Consensus        82 ----~~~~~L~~L~~~~~~~   97 (339)
                          ...++|+.|++++|..
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSC
T ss_pred             HHHHhcCCCcCEEECcCCCC
Confidence                1235677777776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.01  E-value=0.00032  Score=68.98  Aligned_cols=80  Identities=21%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             CCCCccEEEeecCCCCc-cCcccc-CCCCCcEEEeecC-CCcc--CchhhhcCccCcEEEcccCCCC-------ccCCCC
Q 037889           16 GLSSLDRLDLRGCGLTA-IPQEIG-CLSSLKELDICEN-NFES--LPASIMQLSRLTYLYLSKCNML-------LSLPEL   83 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~-lP~~i~-~l~~L~~L~Ls~n-~l~~--lP~~i~~l~~L~~L~L~~c~~l-------~~lP~~   83 (339)
                      .+++|++|+|++|.++. .+..+. .+++|+.|+|++| .++.  ++..+..+++|++|+|++|...       ..++..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            45678888888887766 344443 5778888888887 4553  5555557778888888876622       223333


Q ss_pred             CCCCCEEecccC
Q 037889           84 SLSLKWLDASNC   95 (339)
Q Consensus        84 ~~~L~~L~~~~~   95 (339)
                      .++|+.|++.+|
T Consensus       183 ~~~L~~L~l~~~  194 (594)
T 2p1m_B          183 YTSLVSLNISCL  194 (594)
T ss_dssp             CCCCCEEECTTC
T ss_pred             CCcCcEEEeccc
Confidence            346666666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.00  E-value=0.00034  Score=62.26  Aligned_cols=66  Identities=20%  Similarity=0.202  Sum_probs=49.8

Q ss_pred             CCCcccC---CcCcCCCCCCccEEEeecCCCCccCccccCCC--CCcEEEeecCCCc-cCch-------hhhcCccCcEE
Q 037889            3 RSLVTIP---ASILSSGLSSLDRLDLRGCGLTAIPQEIGCLS--SLKELDICENNFE-SLPA-------SIMQLSRLTYL   69 (339)
Q Consensus         3 n~L~~lP---~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~--~L~~L~Ls~n~l~-~lP~-------~i~~l~~L~~L   69 (339)
                      |+|..++   ..  +..+++|+.|+|++|.|+.+ ..+..+.  +|+.|+|++|.+. .+|.       .+..+++|+.|
T Consensus       180 N~l~~l~~l~~~--~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~L  256 (267)
T 3rw6_A          180 NRLYRLDDMSSI--VQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL  256 (267)
T ss_dssp             SCCCCCGGGTTH--HHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCccchhH--HhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence            5555544   44  56799999999999999987 3455555  9999999999997 4552       36678888887


Q ss_pred             Ec
Q 037889           70 YL   71 (339)
Q Consensus        70 ~L   71 (339)
                      |=
T Consensus       257 Dg  258 (267)
T 3rw6_A          257 DG  258 (267)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.98  E-value=0.0005  Score=67.57  Aligned_cols=83  Identities=16%  Similarity=0.044  Sum_probs=63.6

Q ss_pred             CCCCCCccEEEeecCC--CCc-cCccc-cCCCCCcEEEeecCCCc--cCchhhhcCccCcEEEcccCCCCcc-CCC---C
Q 037889           14 SSGLSSLDRLDLRGCG--LTA-IPQEI-GCLSSLKELDICENNFE--SLPASIMQLSRLTYLYLSKCNMLLS-LPE---L   83 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~--l~~-lP~~i-~~l~~L~~L~Ls~n~l~--~lP~~i~~l~~L~~L~L~~c~~l~~-lP~---~   83 (339)
                      +.++++|+.|+|++|.  ++. .+..+ ..+++|+.|+|++|+++  .+|..+..+++|++|+|++|..... ++.   .
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            4468999999998654  665 33334 44889999999999997  4566678899999999999984322 333   2


Q ss_pred             CCCCCEEecccCc
Q 037889           84 SLSLKWLDASNCK   96 (339)
Q Consensus        84 ~~~L~~L~~~~~~   96 (339)
                      .++|+.|++++|.
T Consensus       512 l~~L~~L~ls~n~  524 (592)
T 3ogk_B          512 LPSLRYLWVQGYR  524 (592)
T ss_dssp             CSSCCEEEEESCB
T ss_pred             cCccCeeECcCCc
Confidence            5789999999987

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.90  E-value=0.0011  Score=52.29  Aligned_cols=48  Identities=27%  Similarity=0.493  Sum_probs=40.7

Q ss_pred             CCCc--ccCCcCcCCCCCCccEEEeecCCCCccCcc-ccCCCCCcEEEeecCCCc
Q 037889            3 RSLV--TIPASILSSGLSSLDRLDLRGCGLTAIPQE-IGCLSSLKELDICENNFE   54 (339)
Q Consensus         3 n~L~--~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~-i~~l~~L~~L~Ls~n~l~   54 (339)
                      +.|+  .+|..+    -.+|+.|+|++|+|+.+|.. |..+++|+.|+|++|.+.
T Consensus        18 ~~L~~~~vP~~l----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           18 RGLTWASLPTAF----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             SCCCTTTSCSCC----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCccccCCCCC----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4567  889873    35799999999999998765 788999999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.87  E-value=0.0003  Score=58.93  Aligned_cols=79  Identities=16%  Similarity=0.146  Sum_probs=60.1

Q ss_pred             CCCCCCccEEEeecC-CCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCCCCcc---
Q 037889           14 SSGLSSLDRLDLRGC-GLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCNMLLS---   79 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n-~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~~l~~---   79 (339)
                      +...++|++|+|++| .|..     +...+...++|+.|+|++|.|..     +...+...+.|++|+|++|.....   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456789999999999 8874     45667778999999999999873     455667778999999999765432   


Q ss_pred             -CCCC---CCCCCEEec
Q 037889           80 -LPEL---SLSLKWLDA   92 (339)
Q Consensus        80 -lP~~---~~~L~~L~~   92 (339)
                       +.+.   ..+|+.|++
T Consensus       112 ~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          112 ALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHhCCCceEEEe
Confidence             2222   246889998

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.87  E-value=0.00041  Score=58.02  Aligned_cols=62  Identities=13%  Similarity=0.090  Sum_probs=33.0

Q ss_pred             ccccCCCCCcEEEeecC-CCc-----cCchhhhcCccCcEEEcccCCCCcc----CCCC---CCCCCEEecccCc
Q 037889           35 QEIGCLSSLKELDICEN-NFE-----SLPASIMQLSRLTYLYLSKCNMLLS----LPEL---SLSLKWLDASNCK   96 (339)
Q Consensus        35 ~~i~~l~~L~~L~Ls~n-~l~-----~lP~~i~~l~~L~~L~L~~c~~l~~----lP~~---~~~L~~L~~~~~~   96 (339)
                      ..+...++|+.|+|++| .+.     .+...+...+.|++|+|++|.....    +.+.   ..+|+.|++++|.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            33455666777777766 654     2344455556677777776543211    1111   1356666666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.81  E-value=0.00079  Score=55.95  Aligned_cols=65  Identities=20%  Similarity=0.367  Sum_probs=49.6

Q ss_pred             CCCCCCccEEEeecCC-CCc-cCccccCC----CCCcEEEeecCC-CccCc-hhhhcCccCcEEEcccCCCCc
Q 037889           14 SSGLSSLDRLDLRGCG-LTA-IPQEIGCL----SSLKELDICENN-FESLP-ASIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~-l~~-lP~~i~~l----~~L~~L~Ls~n~-l~~lP-~~i~~l~~L~~L~L~~c~~l~   78 (339)
                      +.++++|+.|+|++|. |+. -=..+..+    ++|+.|+|++|. ++.-- ..+..+++|++|+|++|..+.
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            5678999999999995 765 12335554    479999999985 77321 356789999999999997665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.58  E-value=0.00057  Score=63.83  Aligned_cols=81  Identities=19%  Similarity=0.151  Sum_probs=64.1

Q ss_pred             CCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCCCCc----cCC
Q 037889           16 GLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCNMLL----SLP   81 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~~l~----~lP   81 (339)
                      ..++|++|+|++|.|+.     ++..+...++|++|+|++|.|+.     ++..+...++|+.|+|++|....    .++
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            45789999999999875     56667889999999999999874     45677888899999999986543    222


Q ss_pred             CC---CCCCCEEecccCc
Q 037889           82 EL---SLSLKWLDASNCK   96 (339)
Q Consensus        82 ~~---~~~L~~L~~~~~~   96 (339)
                      ..   .++|+.|++++|.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHCSSCCEEECTTSS
T ss_pred             HHHHhCCCCCEEeccCCC
Confidence            22   2679999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.05  E-value=0.0025  Score=59.24  Aligned_cols=81  Identities=17%  Similarity=0.171  Sum_probs=54.1

Q ss_pred             CCCCccEEEeecC--C------CCccCccc--cCCCCCcEEEeecCCCcc-Cchhhh---cCccCcEEEcccCCCCc---
Q 037889           16 GLSSLDRLDLRGC--G------LTAIPQEI--GCLSSLKELDICENNFES-LPASIM---QLSRLTYLYLSKCNMLL---   78 (339)
Q Consensus        16 ~l~~L~~L~Ls~n--~------l~~lP~~i--~~l~~L~~L~Ls~n~l~~-lP~~i~---~l~~L~~L~L~~c~~l~---   78 (339)
                      .+++|+.|+|+.+  .      +..+...+  ..+++|+.|+|++|.+.. .+..+.   .+++|++|+|+.|....   
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            6789999998631  1      22222223  357899999999999873 333332   57899999999865443   


Q ss_pred             -cCCCC---CCCCCEEecccCc
Q 037889           79 -SLPEL---SLSLKWLDASNCK   96 (339)
Q Consensus        79 -~lP~~---~~~L~~L~~~~~~   96 (339)
                       .++..   +++|+.|++++|.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHhhcccCCcceEEECCCCc
Confidence             24433   3678999988763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.04  E-value=0.018  Score=53.27  Aligned_cols=58  Identities=17%  Similarity=0.258  Sum_probs=29.6

Q ss_pred             CCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcc
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLS   72 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~   72 (339)
                      |.+..+|+.+.+.. .++.++. .+.++++|+.+.+.++.++.|+ ..|.++.+|+.+.|.
T Consensus       259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            33444444444432 2333332 3455566666666666666554 345556666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.04  E-value=0.027  Score=51.94  Aligned_cols=68  Identities=13%  Similarity=0.222  Sum_probs=55.1

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEccc
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSK   73 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~   73 (339)
                      +++.++..+ |.++.+|+.+.+.++.++.|++ .|.++.+|+.+.|..+ ++.|+ ..|.++++|+.+.+..
T Consensus       273 ~i~~i~~~a-F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          273 KVKTVPYLL-CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CCSEECTTT-TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cceeccccc-cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            355566666 8899999999999999999864 5889999999999754 88887 4688888888887653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.46  E-value=0.047  Score=50.79  Aligned_cols=65  Identities=14%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             CcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcc
Q 037889            5 LVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLS   72 (339)
Q Consensus         5 L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~   72 (339)
                      ++++++.+ |.++.+|+.+.|.. .++.|++ .|.++++|+.++|..+ ++.|+ ..|..+.+|+.+.+.
T Consensus        59 VtsIg~~A-F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           59 VVSIGYAA-FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             EEEECTTT-TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             EeEhHHHH-hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence            45677777 88899999999964 5888754 5888999999999754 77776 456677777776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.34  E-value=0.1  Score=48.17  Aligned_cols=36  Identities=19%  Similarity=0.123  Sum_probs=16.7

Q ss_pred             ccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccC
Q 037889           37 IGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC   74 (339)
Q Consensus        37 i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c   74 (339)
                      +..+++|+.|+|++|.-..+|. +. +++|+.|+|..|
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~  203 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISG  203 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECS
T ss_pred             HhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecC
Confidence            3444555555555552112332 22 455555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.83  E-value=0.13  Score=47.79  Aligned_cols=70  Identities=19%  Similarity=0.309  Sum_probs=52.4

Q ss_pred             cCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCCC
Q 037889            8 IPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         8 lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      ++..+ |.+..+|+.+.+. +.++.+++ .|.++.+|+.++|..+ ++.|. ..|.++.+|+.+.|..  .+..++.
T Consensus       279 I~~~a-F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~  350 (394)
T 4gt6_A          279 IGTGA-FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPE  350 (394)
T ss_dssp             ECTTT-TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCG
T ss_pred             ecCcc-cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhH
Confidence            44455 7788899999985 56777765 4888899999999754 77776 5688899999998864  2455554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.81  E-value=0.16  Score=47.14  Aligned_cols=65  Identities=11%  Similarity=0.179  Sum_probs=41.3

Q ss_pred             cccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEccc
Q 037889            6 VTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSK   73 (339)
Q Consensus         6 ~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~   73 (339)
                      +.+...+ |.+...|+.+.+..+. ..+ ...+.++++|+.+.+. +.++.|+ ..|.++.+|+.+.|..
T Consensus       254 ~~i~~~a-F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          254 ARIETHA-FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE  320 (394)
T ss_dssp             EEECTTT-TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred             eEcccce-eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence            3444444 6677777777775433 333 3446677778888775 4566776 4566777788777754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.43  E-value=0.088  Score=48.91  Aligned_cols=82  Identities=20%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             cCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCCCCCC
Q 037889            8 IPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLPELSL   85 (339)
Q Consensus         8 lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP~~~~   85 (339)
                      +|+.. |....+|+.+.+.++ ++.|++ .|.++++|+.++|.. .++.|+ ..|.++++|+.+.+..+  +..++..  
T Consensus       288 i~~~~-F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~--  360 (394)
T 4fs7_A          288 VPEKT-FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN--  360 (394)
T ss_dssp             ECTTT-TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT--
T ss_pred             ecccc-ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH--
Confidence            56665 788899999999754 777754 588899999999974 488886 56889999999988753  5555542  


Q ss_pred             CCCEEecccCcCCCcC
Q 037889           86 SLKWLDASNCKRLQSL  101 (339)
Q Consensus        86 ~L~~L~~~~~~~l~~l  101 (339)
                           .+.+|.+|+.+
T Consensus       361 -----aF~~C~~L~~i  371 (394)
T 4fs7_A          361 -----AFQGCINLKKV  371 (394)
T ss_dssp             -----TBTTCTTCCEE
T ss_pred             -----HhhCCCCCCEE
Confidence                 24556666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.13  E-value=0.17  Score=42.60  Aligned_cols=81  Identities=11%  Similarity=0.131  Sum_probs=56.5

Q ss_pred             CCCCCccEEEeecC-CCCc-----cCccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccCCCCcc----
Q 037889           15 SGLSSLDRLDLRGC-GLTA-----IPQEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKCNMLLS----   79 (339)
Q Consensus        15 ~~l~~L~~L~Ls~n-~l~~-----lP~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c~~l~~----   79 (339)
                      .+-++|+.|+|++| .|..     +-..+..-+.|+.|+|++|.|.     .|-..+..=+.|++|+|+.|..-..    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34578999999985 7753     4455667789999999999987     3445566668899999998654321    


Q ss_pred             CCC---CCCCCCEEecccC
Q 037889           80 LPE---LSLSLKWLDASNC   95 (339)
Q Consensus        80 lP~---~~~~L~~L~~~~~   95 (339)
                      +-+   .-..|+.|++.++
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            111   1145788888754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.45  E-value=0.13  Score=43.21  Aligned_cols=59  Identities=14%  Similarity=0.192  Sum_probs=46.0

Q ss_pred             CCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccC
Q 037889           16 GLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKC   74 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c   74 (339)
                      .-++|+.|+|++|.|..     |-..+..=+.|+.|+|++|.|..     |-+.+..-+.|+.|+|++|
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            34689999999999874     34455566889999999999873     3445555677999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 39  CLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRL 98
              SL+EL++  N    LPA      RL  L  S  N L  +PEL  +LK L       L
Sbjct: 282 LPPSLEELNVSNNKLIELPALP---PRLERLIAS-FNHLAEVPELPQNLKQLHVEYNP-L 336

Query: 99  QSLPEIPSSLEE 110
           +  P+IP S+E+
Sbjct: 337 REFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
             SL+ L++    L  +P        L+ L    N+   +P        L  L++   N 
Sbjct: 283 PPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEVPEL---PQNLKQLHVE-YNP 335

Query: 77  LLSLPELSLSLKWLDASN 94
           L   P++  S++ L  ++
Sbjct: 336 LREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 18  SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNML 77
                L+L   GL+++P+       L+ L    N+   LP     L  L        N L
Sbjct: 38  RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVD----NNNL 90

Query: 78  LSLPELSLSLKWLDASNC 95
            +L +L   L++L  SN 
Sbjct: 91  KALSDLPPLLEYLGVSNN 108

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 13  LSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRL 66
           L +    L+RL      L  +P+      +LK+L +  N     P     +  L
Sbjct: 299 LPALPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 60  IMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
                 L  L +S  N L+ LP L   L+ L AS    L  +PE+P +L+++   
Sbjct: 280 CDLPPSLEELNVS-NNKLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVE 332

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 39  CL-SSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKR 97
           CL     EL++      SLP        L  L  S CN L  LPEL  SLK L   N   
Sbjct: 35  CLDRQAHELELNNLGLSSLPELP---PHLESLVAS-CNSLTELPELPQSLKSLLVDNN-N 89

Query: 98  LQSLPEIPSSLEEVDAS 114
           L++L ++P  LE +  S
Sbjct: 90  LKALSDLPPLLEYLGVS 106

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLS 72
           S L+ L RL      ++ +   +  L+++  L    N    L   +  L+R+T L L+
Sbjct: 326 SSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 7e-07
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 17  LSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM 76
           L +L  L L    ++ I   +  L+ L+ L    N    +  S+  L+ + +L     N 
Sbjct: 306 LKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAG-HNQ 362

Query: 77  LLSLPELS--LSLKWLDASN 94
           +  L  L+    +  L  ++
Sbjct: 363 ISDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 9/69 (13%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 8   IPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLT 67
           +  ++  + L  +  L     G+ +I   +  L++L +++   N    +   +  L++L 
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLV 91

Query: 68  YLYLSKCNM 76
            + ++   +
Sbjct: 92  DILMNNNQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 18  SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM- 76
           ++LD L L G  L  I   +  L++L +LD+  N   +L   +  L++LT L L    + 
Sbjct: 219 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQIS 276

Query: 77  -LLSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDAS 114
            +  L  L+         N     S      +L  +   
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSK 73
          S ++S   ++     LTA+P ++        L + EN   +   A++M  +RLT L L +
Sbjct: 7  SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 74 CNMLLSLPELSLSLKWLDASNC 95
            +     + +L +      + 
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSH 86

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 33  IPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLD- 91
               +  L +L  L + EN+  ++P        L + +L   N  L   E+    +WL  
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG-NPWLCNCEILYFRRWLQD 222

Query: 92  -ASNCKRLQSLPEIPSSLEEVDA 113
            A N    +   ++ +    V +
Sbjct: 223 NAENVYVWKQGVDVKAMTSNVAS 245

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 24  DLRGCGLT-AIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP 81
           DLR   +   +PQ +  L  L  L++  NN          L R      +    L   P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 47  DICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS--LSLKWLDASNCKRLQSLP 102
           D+  N    +LP  + QL  L  L +S  N+   +P+            +N K L   P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 34/256 (13%), Positives = 71/256 (27%), Gaps = 19/256 (7%)

Query: 19  SLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNML 77
            L  +     GL  +P+++        LD+  N    +       L  L  L L    + 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 78  LSLPELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAYVSSSI 137
              P           +   +L+ L    + L+E+   + +   +     ENE   V  S+
Sbjct: 69  KISPGAF--------APLVKLERLYLSKNQLKELPEKMPKT-LQELRVHENEITKVRKSV 119

Query: 138 EFWFTNSMKLDDEANNKNLADSQLRIQHMAIASLRLFSELAEPCILKGPIIVLPGSEIPE 197
                  + ++       L  + L+   +   + +   +L+   I    I  +P    P 
Sbjct: 120 FNGLNQMIVVE-------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 172

Query: 198 WFSNQSSGSQITLQLPQHCCQNLAGFALCAVLERSDSEWAEFDVGCRYSFEMKTLSGRKH 257
                  G++IT               L        +          +  E+   + +  
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

Query: 258 VRRCCVMASYQITKTD 273
                +     I    
Sbjct: 233 KVPGGLADHKYIQVVY 248

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 2/106 (1%)

Query: 4   SLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQ 62
            +  I        L +L  L L    ++ I P     L  L+ L + +N  + LP  + +
Sbjct: 42  KITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 100

Query: 63  LSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSL 108
             +   ++ ++   +       L+   +       L+S      + 
Sbjct: 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 15  SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKC 74
           +       LDLRG  +  I      L     +D  +N    L      L RL  L ++  
Sbjct: 15  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN 73

Query: 75  NMLLSLPELSLSLKWLDAS--NCKRLQSLPEIPSSLEEVDASVFEKLSKHSHYDENERAY 132
            +      L  +L  L         L  L ++         +    L       ++ R Y
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 133 V 133
           V
Sbjct: 134 V 134

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 23  LDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRL-TYLYLSKCNMLLSLP 81
           L L    LT +   +  L  +  LD+  N   +LP ++  L  L            +   
Sbjct: 3   LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 82  ELSLSLKWLDASNCKRLQSLPEIPS-----SLEEVDAS 114
                L+ L   N  RLQ    I        L  ++  
Sbjct: 62  ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQ 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 2  CRSLVTIPASILSSGLSSLDRLDLRGCGLT-----AIPQEIGCLSSLKELDICENNFESL 56
          C  L     + L   L     + L  CGLT      I   +    +L EL++  N    +
Sbjct: 11 CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV 70

Query: 57 PASIM------QLSRLTYLYLSKCNM 76
              +         ++  L L  C +
Sbjct: 71 GVHCVLQGLQTPSCKIQKLSLQNCCL 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.19
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.06
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.97
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.92
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.85
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.81
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.51
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.5
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.36
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.33
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.38

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=3e-11  Score=93.83  Aligned_cols=89  Identities=24%  Similarity=0.309  Sum_probs=68.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+|+.+|.   +..+++|++|++++|.|+++|+.++.+++|+.|++++|.|+.+| .+..+++|++|++++|+ +..+|.
T Consensus         8 n~l~~l~~---l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i~~~~~   82 (124)
T d1dcea3           8 KDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAA   82 (124)
T ss_dssp             SCCSSCCC---GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSST
T ss_pred             CCCCCCcc---cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-cCCCCC
Confidence            66777763   57888888888888888888888888888888888888888887 48888888888888754 444443


Q ss_pred             -----CCCCCCEEecccCc
Q 037889           83 -----LSLSLKWLDASNCK   96 (339)
Q Consensus        83 -----~~~~L~~L~~~~~~   96 (339)
                           ..++|+.|++.++.
T Consensus        83 ~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          83 IQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             TGGGGGCTTCCEEECTTSG
T ss_pred             chhhcCCCCCCEEECCCCc
Confidence                 12567777776643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=3e-10  Score=88.05  Aligned_cols=99  Identities=25%  Similarity=0.250  Sum_probs=75.7

Q ss_pred             cEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC--CCCCCEEecccCcCC
Q 037889           21 DRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL--SLSLKWLDASNCKRL   98 (339)
Q Consensus        21 ~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~--~~~L~~L~~~~~~~l   98 (339)
                      |+|+|++|+|+.+|. +..+++|++|++++|.++.+|+.++.+++|+.|++++| .+..+|..  +++|+.|++.++. +
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~l~~N~-i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNR-L   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-C
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCccccccccCeEECCCCc-c
Confidence            689999999999975 89999999999999999999999999999999999995 55667753  4789999998854 3


Q ss_pred             CcCCCCCCCccccccccccccCCCC
Q 037889           99 QSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        99 ~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      +.++.. ..+..++.+....++.++
T Consensus        78 ~~~~~~-~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          78 QQSAAI-QPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CSSSTT-GGGGGCTTCCEEECTTSG
T ss_pred             CCCCCc-hhhcCCCCCCEEECCCCc
Confidence            333321 334455555555554443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=3e-10  Score=94.63  Aligned_cols=114  Identities=19%  Similarity=0.202  Sum_probs=83.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCc-c-CccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTA-I-PQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~-l-P~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      ++|+++|+.+    .+++++|+|++|+|+. + +..|.++++|+.|+|++|.+..+| ..+..+++|++|+|++|+....
T Consensus        18 ~~L~~iP~~l----p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l   93 (192)
T d1w8aa_          18 RGLKEIPRDI----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI   93 (192)
T ss_dssp             SCCSSCCSCC----CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred             CCcCccCCCC----CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc
Confidence            5788999984    3689999999999986 4 456799999999999999999775 6788999999999999765554


Q ss_pred             CCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .|..+   .+|+.|+++++. ++.++.  ..+..++.+....+..++
T Consensus        94 ~~~~F~~l~~L~~L~L~~N~-l~~i~~--~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          94 SNKMFLGLHQLKTLNLYDNQ-ISCVMP--GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSC-CCEECT--TSSTTCTTCCEEECTTCC
T ss_pred             CHHHHhCCCcccccccCCcc-ccccCH--HHhcCCcccccccccccc
Confidence            45444   678888988864 344332  233344444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=3.9e-10  Score=93.93  Aligned_cols=94  Identities=23%  Similarity=0.282  Sum_probs=76.7

Q ss_pred             CCCCcc-cCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889            2 CRSLVT-IPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         2 Cn~L~~-lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~   78 (339)
                      -|+|+. ++... |.++++|+.|+|++|.+..+ +..+..+++|+.|+|++|+|+.+|+ .|.++++|++|+|++|+...
T Consensus        38 ~N~i~~~~~~~~-f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          38 DNELGRISSDGL-FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             SCCCCSBCCSCS-GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcccccccc-cCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccc
Confidence            367764 55554 88999999999999999995 5678999999999999999999874 58899999999999966554


Q ss_pred             cCCCCC---CCCCEEecccCc
Q 037889           79 SLPELS---LSLKWLDASNCK   96 (339)
Q Consensus        79 ~lP~~~---~~L~~L~~~~~~   96 (339)
                      ..|..+   .+|+.|++.++.
T Consensus       117 i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         117 VMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCC
T ss_pred             cCHHHhcCCcccccccccccc
Confidence            444443   678888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4e-10  Score=98.70  Aligned_cols=91  Identities=24%  Similarity=0.223  Sum_probs=74.4

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +.|+++|+.  +.  ++|++|+|++|.|+++| ..|.++++|+.|+|++|+|+.+|. ++.+++|++|+|++|+. ..+|
T Consensus        20 ~~L~~iP~~--lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l-~~~~   93 (266)
T d1p9ag_          20 RNLTALPPD--LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQL-QSLP   93 (266)
T ss_dssp             SCCSSCCSC--CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCC-SSCC
T ss_pred             CCCCeeCcC--cC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccc-cccc
Confidence            568899988  32  67999999999999986 568999999999999999999984 67899999999999754 4455


Q ss_pred             CC---CCCCCEEecccCcCCC
Q 037889           82 EL---SLSLKWLDASNCKRLQ   99 (339)
Q Consensus        82 ~~---~~~L~~L~~~~~~~l~   99 (339)
                      ..   +++|+.|+++++...+
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~  114 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTS  114 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccccccccce
Confidence            43   3678888888776444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9.4e-10  Score=96.25  Aligned_cols=75  Identities=28%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             CCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccCCC--CCCCCCEEeccc
Q 037889           18 SSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSLPE--LSLSLKWLDASN   94 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~lP~--~~~~L~~L~~~~   94 (339)
                      ..+.+.+.+++.|+.+|..+.  ++|+.|+|++|+|+.+| ..|.++++|++|+|++|+ +..+|.  .+++|+.|++++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSH   86 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCS
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccccccccccccccccc
Confidence            334444444555555554442  34455555555555444 234455555555555432 233332  224445555544


Q ss_pred             C
Q 037889           95 C   95 (339)
Q Consensus        95 ~   95 (339)
                      +
T Consensus        87 N   87 (266)
T d1p9ag_          87 N   87 (266)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.2e-10  Score=92.06  Aligned_cols=106  Identities=20%  Similarity=0.261  Sum_probs=78.2

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC----CCCCCCE
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE----LSLSLKW   89 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~----~~~~L~~   89 (339)
                      +.+...|++|+|++|.|+.+|..+..+++|+.|+|++|.++.++ .+..+++|++|++++|+. ..+|.    .+++|+.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccc-cCCCcccccccccccc
Confidence            45777899999999999999887788999999999999999986 588999999999999765 44554    2478999


Q ss_pred             EecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           90 LDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        90 L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      |++.+|. ++.++.. ..+..++.+....+..++
T Consensus        92 L~L~~N~-i~~~~~l-~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          92 LILTNNS-LVELGDL-DPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             EECCSCC-CCCGGGG-GGGGGCTTCCEEECCSSG
T ss_pred             ceecccc-ccccccc-cccccccccchhhcCCCc
Confidence            9998864 2333221 234445555544444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.4e-09  Score=86.20  Aligned_cols=91  Identities=23%  Similarity=0.206  Sum_probs=72.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecC-CCCccCc-cccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGC-GLTAIPQ-EIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n-~l~~lP~-~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      +++.++|..  +..+++|++|+++++ .|+.++. .|.++++|+.|+|++|+|+.++ ..|..+++|++|+|++|+ ++.
T Consensus        18 ~~~~~~p~~--l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~   94 (156)
T d2ifga3          18 DGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LES   94 (156)
T ss_dssp             SCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSC
T ss_pred             CCCccCccc--ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC-Ccc
Confidence            355677887  788999999999876 5888864 5899999999999999999985 568899999999999855 556


Q ss_pred             CCCCC---CCCCEEecccCc
Q 037889           80 LPELS---LSLKWLDASNCK   96 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~   96 (339)
                      +|...   .+|+.|++.++.
T Consensus        95 l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          95 LSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCSTTTCSCCCCEEECCSSC
T ss_pred             cChhhhccccccccccCCCc
Confidence            76532   356777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.2e-09  Score=88.58  Aligned_cols=91  Identities=21%  Similarity=0.234  Sum_probs=76.0

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhh-hcCccCcEEEcccCCCCccC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASI-MQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i-~~l~~L~~L~L~~c~~l~~l   80 (339)
                      .|+|+.+|..  +..+++|+.|+|++|.|+.++ .+..+++|+.|++++|+++.+|+.+ ..+++|+.|++++|+ +..+
T Consensus        27 ~n~I~~i~~~--~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~-i~~~  102 (162)
T d1a9na_          27 GYKIPVIENL--GATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVEL  102 (162)
T ss_dssp             TSCCCSCCCG--GGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCG
T ss_pred             CCCCCccCcc--ccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceecccc-cccc
Confidence            4678899865  678999999999999999995 5899999999999999999998654 679999999999965 4445


Q ss_pred             CC-----CCCCCCEEecccCc
Q 037889           81 PE-----LSLSLKWLDASNCK   96 (339)
Q Consensus        81 P~-----~~~~L~~L~~~~~~   96 (339)
                      ++     .+++|+.|++.+|.
T Consensus       103 ~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_         103 GDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             GGGGGGGGCTTCCEEECCSSG
T ss_pred             ccccccccccccchhhcCCCc
Confidence            43     23678888888865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.85  E-value=1.4e-09  Score=97.19  Aligned_cols=79  Identities=33%  Similarity=0.501  Sum_probs=43.8

Q ss_pred             CccEEEeecCCCCc---cCccccCCCCCcEEEeec-CCCc-cCchhhhcCccCcEEEcccCCCCccCCCCC---CCCCEE
Q 037889           19 SLDRLDLRGCGLTA---IPQEIGCLSSLKELDICE-NNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPELS---LSLKWL   90 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~---lP~~i~~l~~L~~L~Ls~-n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~---~~L~~L   90 (339)
                      +++.|+|+++++.+   +|.++++|++|++|+|++ |+++ .+|++|++|++|++|+|++|+..+..|..+   ..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45566666665553   556666666666666654 4555 566666666666666666655544444322   345555


Q ss_pred             ecccCcC
Q 037889           91 DASNCKR   97 (339)
Q Consensus        91 ~~~~~~~   97 (339)
                      ++.++..
T Consensus       131 ~l~~N~~  137 (313)
T d1ogqa_         131 DFSYNAL  137 (313)
T ss_dssp             ECCSSEE
T ss_pred             ccccccc
Confidence            5555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.4e-09  Score=86.19  Aligned_cols=74  Identities=26%  Similarity=0.275  Sum_probs=65.7

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCcc-CccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCC
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAI-PQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNM   76 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~   76 (339)
                      .+.|+.++... |.++++|+.|+|++|+|+.+ |..|..+++|+.|+|++|+|+.+|..+....+|+.|+|++|..
T Consensus        41 n~~l~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          41 QQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCEECGGG-SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CccccccCchh-hccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            35689998876 89999999999999999998 5669999999999999999999998777667899999999754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=6e-09  Score=91.72  Aligned_cols=118  Identities=21%  Similarity=0.269  Sum_probs=85.4

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      .+.++.+++.. |.++++|++|++++|.+..++ ..+..+.+|+.+++++|.++.+| ..+..+++|+.|++++|+....
T Consensus        90 ~~~~~~l~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          90 NAQLRSVDPAT-FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             CTTCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccccccccchh-hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence            45677776665 889999999999999998864 45778899999999999999887 4577889999999998765443


Q ss_pred             CCCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           80 LPELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      .|..+   .+|+.+++.++......+   ..+..++.+...+++.+.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~---~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHP---HAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSC
T ss_pred             chhhhccccccchhhhhhccccccCh---hHhhhhhhcccccccccc
Confidence            34443   578888888766443333   444455555555555444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.78  E-value=1.4e-09  Score=97.21  Aligned_cols=89  Identities=21%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             cCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCccCCCC--C
Q 037889            8 IPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLSLPEL--S   84 (339)
Q Consensus         8 lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~lP~~--~   84 (339)
                      +|..  +..+++|+.|++++|.+...|..++.+++|+.|+|++|+++ .+|++|+++++|++|+|++|+..+.+|+.  +
T Consensus       213 ~~~~--~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L  290 (313)
T d1ogqa_         213 ASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL  290 (313)
T ss_dssp             CGGG--CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred             cccc--ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccC
Confidence            4444  56777788888888877776666777788888888888887 77888888888888888887777777764  2


Q ss_pred             CCCCEEecccCcCC
Q 037889           85 LSLKWLDASNCKRL   98 (339)
Q Consensus        85 ~~L~~L~~~~~~~l   98 (339)
                      .+|+.+++.++..+
T Consensus       291 ~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         291 QRFDVSAYANNKCL  304 (313)
T ss_dssp             GGSCGGGTCSSSEE
T ss_pred             CCCCHHHhCCCccc
Confidence            34444555554433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=2.2e-08  Score=88.80  Aligned_cols=116  Identities=19%  Similarity=0.211  Sum_probs=78.4

Q ss_pred             CCCCcccCCcCcCCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCcc
Q 037889            2 CRSLVTIPASILSSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         2 Cn~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      ++++..+|..+    +++|+.|++++|.+.. .|..+.+++.++.|++++|.++.++ ..+..+++|++|+|++| .+..
T Consensus       159 ~n~l~~l~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~  233 (305)
T d1xkua_         159 DTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVK  233 (305)
T ss_dssp             SSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSS
T ss_pred             cCCccccCccc----CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccc
Confidence            35567777662    5778888888888777 5677888888888888888888774 56778888888888886 4566


Q ss_pred             CCCCC---CCCCEEecccCcCCCcCCC----CCCCccccccccccccCCCC
Q 037889           80 LPELS---LSLKWLDASNCKRLQSLPE----IPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        80 lP~~~---~~L~~L~~~~~~~l~~l~~----~~~~l~~l~~~~~~~l~~~~  123 (339)
                      +|..+   ++|+.|+++++. ++.++.    .+.....+..+....+..++
T Consensus       234 lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         234 VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            77643   577888888753 555543    11223334444444454444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=5e-08  Score=81.22  Aligned_cols=80  Identities=21%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCC-CCCCCCCEEec
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLP-ELSLSLKWLDA   92 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP-~~~~~L~~L~~   92 (339)
                      +..+++|++|+|++|.|+.++. ++++++|+.|++++|.+..+| .+..++.|+.|++++|......+ ..+.+|+.|++
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l  135 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  135 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-ccccccccccccccccccccccccchhhhhHHhhh
Confidence            4556666666666666666554 666666666666666666665 36666666666666654443222 12355666666


Q ss_pred             ccC
Q 037889           93 SNC   95 (339)
Q Consensus        93 ~~~   95 (339)
                      +++
T Consensus       136 ~~n  138 (199)
T d2omxa2         136 SSN  138 (199)
T ss_dssp             CSS
T ss_pred             hhh
Confidence            654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=2.3e-08  Score=88.66  Aligned_cols=88  Identities=28%  Similarity=0.405  Sum_probs=74.5

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCccC-chhhhcCccCcEEEcccCCCCccCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFESL-PASIMQLSRLTYLYLSKCNMLLSLP   81 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~l-P~~i~~l~~L~~L~L~~c~~l~~lP   81 (339)
                      +|+++|..  +  .+++++|+|++|+|+++|+ +|.++++|+.|++++|.+..+ |..|.++++|++|++++|+ ++.+|
T Consensus        21 ~L~~lP~~--l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~   95 (305)
T d1xkua_          21 GLEKVPKD--L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELP   95 (305)
T ss_dssp             CCCSCCCS--C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCC
T ss_pred             CCCccCCC--C--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCc
Confidence            58999998  3  3689999999999999986 699999999999999999988 5679999999999999965 55676


Q ss_pred             CC-CCCCCEEecccCc
Q 037889           82 EL-SLSLKWLDASNCK   96 (339)
Q Consensus        82 ~~-~~~L~~L~~~~~~   96 (339)
                      .. ...+..|...++.
T Consensus        96 ~~~~~~l~~L~~~~n~  111 (305)
T d1xkua_          96 EKMPKTLQELRVHENE  111 (305)
T ss_dssp             SSCCTTCCEEECCSSC
T ss_pred             cchhhhhhhhhccccc
Confidence            54 4677888777643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=1.1e-07  Score=79.78  Aligned_cols=60  Identities=30%  Similarity=0.328  Sum_probs=34.0

Q ss_pred             CCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCC
Q 037889           14 SSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCN   75 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~   75 (339)
                      +..+++|++|+|++|.|++++. ++.+++|+.|++++|+++.+| .+..+++|+.|++++|.
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSC
T ss_pred             HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-ccccccccccccccccc
Confidence            3455556666666666555542 455556666666666665555 35555566666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.60  E-value=4.9e-08  Score=87.27  Aligned_cols=82  Identities=32%  Similarity=0.453  Sum_probs=50.8

Q ss_pred             EEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCCCCCCCEEecccCcCCCcC
Q 037889           22 RLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSL  101 (339)
Q Consensus        22 ~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~~~~L~~L~~~~~~~l~~l  101 (339)
                      ..++..+.+..++.   .+++|++|+|++|+++.+|+.   +++|+.|+|++|+ ++.+|+.+.+|+.|++++|. ++.+
T Consensus       268 ~~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~l  339 (353)
T d1jl5a_         268 YLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREF  339 (353)
T ss_dssp             EEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSC
T ss_pred             ccccccCccccccc---cCCCCCEEECCCCccCccccc---cCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCC
Confidence            34444444444332   345677777777777777743   4567777777643 55677777777777777765 6666


Q ss_pred             CCCCCCcccc
Q 037889          102 PEIPSSLEEV  111 (339)
Q Consensus       102 ~~~~~~l~~l  111 (339)
                      |..|..+++|
T Consensus       340 p~~~~~L~~L  349 (353)
T d1jl5a_         340 PDIPESVEDL  349 (353)
T ss_dssp             CCCCTTCCEE
T ss_pred             CccccccCee
Confidence            6666555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.6e-08  Score=85.84  Aligned_cols=117  Identities=23%  Similarity=0.263  Sum_probs=87.3

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccC-ccccCCCCCcEEEeecCCCccCc-hhhhcCccCcEEEcccCCCCccC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIP-QEIGCLSSLKELDICENNFESLP-ASIMQLSRLTYLYLSKCNMLLSL   80 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~Ls~n~l~~lP-~~i~~l~~L~~L~L~~c~~l~~l   80 (339)
                      +.+..++... +..+.+|+.+++++|+|+.+| ..+..+++|+.|+|++|+++.+| ..+..+++|++|++++|+.....
T Consensus       115 n~~~~~~~~~-~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         115 CGLQELGPGL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             SCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cccccccccc-cchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            4455666654 788899999999999999986 56888999999999999999886 56789999999999998888777


Q ss_pred             CCCC---CCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           81 PELS---LSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        81 P~~~---~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      |..+   .+|+.|+++++.... ++  +..+..+..+....++.++
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~-~~--~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSA-LP--TEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSC-CC--HHHHTTCTTCCEEECCSSC
T ss_pred             hhHhhhhhhccccccccccccc-cc--ccccccccccCEEEecCCC
Confidence            8765   578888888765322 21  2334444444444454444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.57  E-value=2.7e-10  Score=95.66  Aligned_cols=89  Identities=21%  Similarity=0.255  Sum_probs=66.0

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCCC
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPEL   83 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~~   83 (339)
                      .++.+|..  +..|++|++|+|++|.|+.++ .+..+++|+.|+|++|.++.+|..+..+++|++|++++|+ +..++..
T Consensus        36 ~i~~l~~s--l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~  111 (198)
T d1m9la_          36 PIEKMDAT--LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGI  111 (198)
T ss_dssp             TCCCCHHH--HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHHHH
T ss_pred             chhhhhhH--HhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccc-ccccccc
Confidence            35555555  677888888888888888886 4888888888888888888888666667788888888864 4445432


Q ss_pred             --CCCCCEEecccCc
Q 037889           84 --SLSLKWLDASNCK   96 (339)
Q Consensus        84 --~~~L~~L~~~~~~   96 (339)
                        +.+|+.|+++++.
T Consensus       112 ~~l~~L~~L~L~~N~  126 (198)
T d1m9la_         112 EKLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHHHSSEEEESEEE
T ss_pred             cccccccccccccch
Confidence              3577888887653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.55  E-value=1.5e-07  Score=78.97  Aligned_cols=110  Identities=20%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+++.+++   ++.+++|++|++++|+|+++| .+..+++|+.|++++|.+..++ .+..++.|+.+++++|.... ++.
T Consensus        78 n~i~~l~~---~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~-~~~  151 (210)
T d1h6ta2          78 NKLTDIKP---LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITV  151 (210)
T ss_dssp             SCCCCCGG---GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGG
T ss_pred             ccccCccc---cccCccccccccccccccccc-cccccccccccccccccccccc-cccccccccccccccccccc-ccc
Confidence            46777774   578999999999999999998 5899999999999999998877 68899999999999876543 332


Q ss_pred             --CCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           83 --LSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        83 --~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                        .+.+|+.+++.++. +..++    .++.++.+....++.+.
T Consensus       152 ~~~l~~L~~l~l~~n~-l~~i~----~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         152 LSRLTKLDTLSLEDNQ-ISDIV----PLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             GGGCTTCSEEECCSSC-CCCCG----GGTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccc-ccccc----cccCCCCCCEEECCCCC
Confidence              34688999988864 33332    24555555555555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=2.6e-07  Score=76.72  Aligned_cols=80  Identities=15%  Similarity=0.282  Sum_probs=67.6

Q ss_pred             CCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC--CCCCCCEEecc
Q 037889           16 GLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE--LSLSLKWLDAS   93 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~--~~~~L~~L~~~   93 (339)
                      .+.++++|++++|.|+.++ .+..+++|++|++++|+++.+++ ++.+++|++|++++|.. ..+|.  .+..|+.|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccc-cccccccccccccccccc
Confidence            5789999999999999985 48899999999999999999885 99999999999998654 44553  34788999998


Q ss_pred             cCcCC
Q 037889           94 NCKRL   98 (339)
Q Consensus        94 ~~~~l   98 (339)
                      ++...
T Consensus       115 ~~~~~  119 (199)
T d2omxa2         115 NNQIT  119 (199)
T ss_dssp             SSCCC
T ss_pred             ccccc
Confidence            77643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=9.7e-08  Score=86.58  Aligned_cols=88  Identities=24%  Similarity=0.446  Sum_probs=61.2

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      +++..+++   +..+..++.+.++.|.++.++ .+..+++++.|++++|+++.++ .+..+++|+.|++++|+ ++.+|.
T Consensus       273 ~~l~~~~~---~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~-l~~l~~  346 (384)
T d2omza2         273 NQISNISP---LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VSDVSS  346 (384)
T ss_dssp             SCCCCCGG---GTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-CCCCGG
T ss_pred             cccCCCCc---ccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCC-CCCChh
Confidence            44444543   456777888888888877754 3677788888888888888776 37778888888888764 445553


Q ss_pred             C--CCCCCEEecccCc
Q 037889           83 L--SLSLKWLDASNCK   96 (339)
Q Consensus        83 ~--~~~L~~L~~~~~~   96 (339)
                      .  +++|+.|++++|.
T Consensus       347 l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         347 LANLTNINWLSAGHNQ  362 (384)
T ss_dssp             GGGCTTCCEEECCSSC
T ss_pred             HcCCCCCCEEECCCCc
Confidence            2  3577888887653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=1.3e-07  Score=80.15  Aligned_cols=84  Identities=24%  Similarity=0.285  Sum_probs=51.5

Q ss_pred             CCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC--CCCCCCEEec
Q 037889           15 SGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE--LSLSLKWLDA   92 (339)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~--~~~~L~~L~~   92 (339)
                      .....++.+.++++.+...+. +.++++|+.|++++|.++.++ .++.+++|+.|+|++|+ +..+|.  .+++|+.|++
T Consensus       126 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~L  202 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHL  202 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEEC
T ss_pred             ccccchhhhhchhhhhchhhh-hccccccccccccccccccch-hhcccccceecccCCCc-cCCChhhcCCCCCCEEEC
Confidence            445666677777666655432 556667777777777766555 36667777777777653 444553  2356777777


Q ss_pred             ccCcCCCcCC
Q 037889           93 SNCKRLQSLP  102 (339)
Q Consensus        93 ~~~~~l~~l~  102 (339)
                      ++| .++.++
T Consensus       203 s~N-~lt~i~  211 (227)
T d1h6ua2         203 KNN-QISDVS  211 (227)
T ss_dssp             TTS-CCCBCG
T ss_pred             cCC-cCCCCc
Confidence            766 344443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.47  E-value=3.8e-07  Score=81.24  Aligned_cols=45  Identities=36%  Similarity=0.474  Sum_probs=29.6

Q ss_pred             CccCcEEEcccCCCCccCCCCCCCCCEEecccCcCCCcCCCCCCCcc
Q 037889           63 LSRLTYLYLSKCNMLLSLPELSLSLKWLDASNCKRLQSLPEIPSSLE  109 (339)
Q Consensus        63 l~~L~~L~L~~c~~l~~lP~~~~~L~~L~~~~~~~l~~l~~~~~~l~  109 (339)
                      +++|++|+|++|+ +..+|..+++|+.|++++|. ++.++..+..++
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~  327 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPALPPRLERLIASFNH-LAEVPELPQNLK  327 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCC
T ss_pred             CCCCCEEECCCCc-cCccccccCCCCEEECCCCc-CCccccccCCCC
Confidence            4678888888754 55777777788888887653 555554443333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=8.7e-07  Score=74.80  Aligned_cols=70  Identities=21%  Similarity=0.335  Sum_probs=44.3

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCc
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~   78 (339)
                      .|+.++ .  +..+++|++|++++|.+++++. +..+++|+.+++++|.++.++ .+..+++|+.|++++|....
T Consensus        52 ~i~~l~-~--l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          52 GVTTIE-G--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             CCCCCT-T--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred             CCCcch-h--HhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-cccccccccccccccccccc
Confidence            455553 3  4566777777777777666543 666667777777777666665 46666777777776655443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6e-07  Score=76.34  Aligned_cols=80  Identities=29%  Similarity=0.221  Sum_probs=34.5

Q ss_pred             CccEEEeecCCCCccCccccCCCCCcEEE-eecCCCccCchh-hhcCccCcEEEcccCCCCccCCC-CCCCCCEEecccC
Q 037889           19 SLDRLDLRGCGLTAIPQEIGCLSSLKELD-ICENNFESLPAS-IMQLSRLTYLYLSKCNMLLSLPE-LSLSLKWLDASNC   95 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~-Ls~n~l~~lP~~-i~~l~~L~~L~L~~c~~l~~lP~-~~~~L~~L~~~~~   95 (339)
                      .++.|++++|+++.++.......+++.+. +++|+++.+|.. +.++++|++|+|++|+ +..+|. .+.++..|...++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcC
Confidence            34445555555555444443344433332 344445555432 3445555555555433 233332 2344444443333


Q ss_pred             cCCC
Q 037889           96 KRLQ   99 (339)
Q Consensus        96 ~~l~   99 (339)
                      .+++
T Consensus       233 ~~l~  236 (242)
T d1xwdc1         233 YNLK  236 (242)
T ss_dssp             ESSS
T ss_pred             CCCC
Confidence            3333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6e-07  Score=76.31  Aligned_cols=90  Identities=20%  Similarity=0.285  Sum_probs=73.0

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCc-cccCCCCCcEEEeecCCCcc-Cc-hhhhcCccCcEEEcccCCCCcc
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQ-EIGCLSSLKELDICENNFES-LP-ASIMQLSRLTYLYLSKCNMLLS   79 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~Ls~n~l~~-lP-~~i~~l~~L~~L~L~~c~~l~~   79 (339)
                      +.++++|+.+    .+++++|+|++|.|+.+|. .|.++++|++|++++|.+.. +| ..|..++.++.|.+..++.+..
T Consensus        18 ~~l~~iP~~l----~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~   93 (242)
T d1xwdc1          18 SKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY   93 (242)
T ss_dssp             CSCSSCCSCS----CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE
T ss_pred             CCCCCcCCCC----CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc
Confidence            3688999884    3579999999999999876 58999999999999999875 44 4678899999999987766666


Q ss_pred             CCC-C---CCCCCEEecccCc
Q 037889           80 LPE-L---SLSLKWLDASNCK   96 (339)
Q Consensus        80 lP~-~---~~~L~~L~~~~~~   96 (339)
                      ++. .   .++|+.|++.++.
T Consensus        94 ~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          94 INPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             ECTTSEECCTTCCEEEEESCC
T ss_pred             cccccccccccccccccchhh
Confidence            554 2   3688999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.33  E-value=5.7e-09  Score=87.29  Aligned_cols=89  Identities=27%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             CCCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCchhhhcCccCcEEEcccCCCCccCCC
Q 037889            3 RSLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPASIMQLSRLTYLYLSKCNMLLSLPE   82 (339)
Q Consensus         3 n~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~L~~c~~l~~lP~   82 (339)
                      |+|+.++ .  +.++++|+.|+|++|.|+.+|..+..+++|+.|++++|+++.++ .+..+++|+.|++++|+. ..++.
T Consensus        58 n~I~~i~-~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i-~~~~~  132 (198)
T d1m9la_          58 NNIEKIS-S--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKI-TNWGE  132 (198)
T ss_dssp             EEESCCC-C--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEEC-CCHHH
T ss_pred             cCCCCcc-c--ccCCccccChhhcccccccccccccccccccccccccccccccc-cccccccccccccccchh-ccccc
Confidence            4566775 3  67899999999999999999987777789999999999999886 588999999999998654 44442


Q ss_pred             -----CCCCCCEEecccCc
Q 037889           83 -----LSLSLKWLDASNCK   96 (339)
Q Consensus        83 -----~~~~L~~L~~~~~~   96 (339)
                           .+++|+.|++.+++
T Consensus       133 ~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         133 IDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHTTTTTCSEEEECSSH
T ss_pred             cccccCCCccceeecCCCc
Confidence                 34688899988865

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.21  E-value=3.7e-06  Score=75.75  Aligned_cols=110  Identities=23%  Similarity=0.306  Sum_probs=67.1

Q ss_pred             CCcccCCcCcCCCCCCccEEEeecCCCCccCccccCCCCCcEEEeecCCCccCch---------------------hhhc
Q 037889            4 SLVTIPASILSSGLSSLDRLDLRGCGLTAIPQEIGCLSSLKELDICENNFESLPA---------------------SIMQ   62 (339)
Q Consensus         4 ~L~~lP~~~~~~~l~~L~~L~Ls~n~l~~lP~~i~~l~~L~~L~Ls~n~l~~lP~---------------------~i~~   62 (339)
                      +++.+| .  +..+++|+.|++++|.+++++. ++.+++|+.|++++|+++.+++                     .+..
T Consensus       230 ~l~~~~-~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~  305 (384)
T d2omza2         230 QLKDIG-T--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN  305 (384)
T ss_dssp             CCCCCG-G--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGG
T ss_pred             CCCCcc-h--hhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccccch
Confidence            455554 2  5667788888888888777654 6677778888877777665442                     3455


Q ss_pred             CccCcEEEcccCCCCccCC--CCCCCCCEEecccCcCCCcCCCCCCCccccccccccccCCCC
Q 037889           63 LSRLTYLYLSKCNMLLSLP--ELSLSLKWLDASNCKRLQSLPEIPSSLEEVDASVFEKLSKHS  123 (339)
Q Consensus        63 l~~L~~L~L~~c~~l~~lP--~~~~~L~~L~~~~~~~l~~l~~~~~~l~~l~~~~~~~l~~~~  123 (339)
                      +++++.|++++|+..+ ++  ..+++|+.|++++| .++.++    .++.++.+....++.+.
T Consensus       306 ~~~l~~L~ls~n~l~~-l~~l~~l~~L~~L~L~~n-~l~~l~----~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         306 LKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANN-KVSDVS----SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CTTCSEEECCSSCCSC-CGGGGGCTTCCEEECCSS-CCCCCG----GGGGCTTCCEEECCSSC
T ss_pred             hcccCeEECCCCCCCC-CcccccCCCCCEEECCCC-CCCCCh----hHcCCCCCCEEECCCCc
Confidence            6677777777654433 33  23467777777776 344332    34455555555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.2e-06  Score=70.16  Aligned_cols=63  Identities=19%  Similarity=0.203  Sum_probs=37.1

Q ss_pred             CCCCccEEEeecCCCCccC---ccccCCCCCcEEEeecCCCccCch-hhhcCccCcEEEcccCCCCc
Q 037889           16 GLSSLDRLDLRGCGLTAIP---QEIGCLSSLKELDICENNFESLPA-SIMQLSRLTYLYLSKCNMLL   78 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~lP---~~i~~l~~L~~L~Ls~n~l~~lP~-~i~~l~~L~~L~L~~c~~l~   78 (339)
                      .+++|++|+|++|+|+.++   ..+..+++|+.|+|++|.++.+++ ......+|+.|++++|....
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3556666777777666543   335556667777777777666653 22233456666666655443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.1e-06  Score=76.90  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             CCCCccEEEeecCCCCc--cCccccCCCCCcEEEeecCCCc-cCchhhhcCccCcEEEcccCCCCcc--CC---CCCCCC
Q 037889           16 GLSSLDRLDLRGCGLTA--IPQEIGCLSSLKELDICENNFE-SLPASIMQLSRLTYLYLSKCNMLLS--LP---ELSLSL   87 (339)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~Ls~n~l~-~lP~~i~~l~~L~~L~L~~c~~l~~--lP---~~~~~L   87 (339)
                      ...+|++|+|++|.+..  ++..+..+++|++|+|++|.+. ..+..+..+++|++|++++|..+..  +.   ...++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            45578888888888765  5666778888888888888876 4556777888888888888766542  11   234678


Q ss_pred             CEEecccCcCC
Q 037889           88 KWLDASNCKRL   98 (339)
Q Consensus        88 ~~L~~~~~~~l   98 (339)
                      +.|++++|..+
T Consensus       124 ~~L~ls~c~~~  134 (284)
T d2astb2         124 DELNLSWCFDF  134 (284)
T ss_dssp             CEEECCCCTTC
T ss_pred             ccccccccccc
Confidence            88888877654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.7e-06  Score=71.83  Aligned_cols=83  Identities=28%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             CCCCCCccEEEeecCCCCc-cCccccCCCCCcEEEeecC-CCcc--CchhhhcCccCcEEEcccCCCCcc--CC----CC
Q 037889           14 SSGLSSLDRLDLRGCGLTA-IPQEIGCLSSLKELDICEN-NFES--LPASIMQLSRLTYLYLSKCNMLLS--LP----EL   83 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~-lP~~i~~l~~L~~L~Ls~n-~l~~--lP~~i~~l~~L~~L~L~~c~~l~~--lP----~~   83 (339)
                      +..+++|++|+|++|.+.. .+..++.+++|+.|+|++| .++.  +..-...+++|++|++++|.....  ++    ..
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            4567788888888887765 5666777788888888875 4552  333345677888888888765431  11    22


Q ss_pred             CCCCCEEecccCc
Q 037889           84 SLSLKWLDASNCK   96 (339)
Q Consensus        84 ~~~L~~L~~~~~~   96 (339)
                      ...|+.|++.+|.
T Consensus       147 ~~~L~~L~l~~~~  159 (284)
T d2astb2         147 SETITQLNLSGYR  159 (284)
T ss_dssp             CTTCCEEECCSCG
T ss_pred             ccccchhhhcccc
Confidence            3567778777663

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=7.7e-05  Score=67.97  Aligned_cols=60  Identities=23%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             CCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCcc-----Cchhhhc-CccCcEEEcccCCC
Q 037889           17 LSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQ-LSRLTYLYLSKCNM   76 (339)
Q Consensus        17 l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~-l~~L~~L~L~~c~~   76 (339)
                      ++++++|+|++|.|+.     ++..+...++|+.|+|++|.|+.     +...+.. ..+|+.|+|++|..
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i   96 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL   96 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCc
Confidence            4556666666666552     34445556666666666666542     1112211 23566666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=2.2e-05  Score=62.58  Aligned_cols=58  Identities=26%  Similarity=0.212  Sum_probs=39.8

Q ss_pred             ccCCCCCcEEEeecCCCccCc---hhhhcCccCcEEEcccCCCCccCCCC----CCCCCEEecccC
Q 037889           37 IGCLSSLKELDICENNFESLP---ASIMQLSRLTYLYLSKCNMLLSLPEL----SLSLKWLDASNC   95 (339)
Q Consensus        37 i~~l~~L~~L~Ls~n~l~~lP---~~i~~l~~L~~L~L~~c~~l~~lP~~----~~~L~~L~~~~~   95 (339)
                      ...+++|+.|+|++|+++.++   ..+..+++|+.|+|++| .+..+++.    ..+|+.|++.++
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCC
Confidence            356788999999999988664   45678899999999984 45555541    134555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00036  Score=63.27  Aligned_cols=78  Identities=15%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             CccEEEeecCCCCc--cCccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccCCCC--------ccCCCC
Q 037889           19 SLDRLDLRGCGLTA--IPQEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKCNML--------LSLPEL   83 (339)
Q Consensus        19 ~L~~L~Ls~n~l~~--lP~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c~~l--------~~lP~~   83 (339)
                      +|+.||+++++|+.  +..-+..+++|+.|+|++|+++     .|+..+..+++|+.|+|++|+..        ..+...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            58899999999987  4555677889999999999987     35666788899999999987642        122222


Q ss_pred             CCCCCEEecccCc
Q 037889           84 SLSLKWLDASNCK   96 (339)
Q Consensus        84 ~~~L~~L~~~~~~   96 (339)
                      ..+|+.|++++|.
T Consensus        83 ~~~L~~L~L~~n~   95 (460)
T d1z7xw1          83 SCKIQKLSLQNCC   95 (460)
T ss_dssp             TCCCCEEECTTSC
T ss_pred             CCCCCEEECCCCC
Confidence            3579999998875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.83  E-value=0.0039  Score=54.78  Aligned_cols=58  Identities=22%  Similarity=0.370  Sum_probs=26.7

Q ss_pred             CCccEEEeecCCCCc------cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCC
Q 037889           18 SSLDRLDLRGCGLTA------IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCN   75 (339)
Q Consensus        18 ~~L~~L~Ls~n~l~~------lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~   75 (339)
                      ++|+.|+|++|.|..      +...+...++|+.|+|++|.++.     +...+...++|++|+|++|.
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            445555555555432      12223444555555555555431     23334444555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.71  E-value=0.0014  Score=57.81  Aligned_cols=83  Identities=18%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             CCCCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCccC-----chhhhc--CccCcEEEcccCCCCcc--
Q 037889           14 SSGLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFESL-----PASIMQ--LSRLTYLYLSKCNMLLS--   79 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~l-----P~~i~~--l~~L~~L~L~~c~~l~~--   79 (339)
                      +...++|+.|+|++|.+..     +...+...++|+.|+|++|.++..     -..+..  ...|+.|++++|+....  
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            5567899999999999864     456678899999999999998742     233443  35799999999764321  


Q ss_pred             --CCC----CCCCCCEEecccCc
Q 037889           80 --LPE----LSLSLKWLDASNCK   96 (339)
Q Consensus        80 --lP~----~~~~L~~L~~~~~~   96 (339)
                        +..    ..++|+.|+++++.
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHccCCCCCEEECCCCc
Confidence              121    23467888877644

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.27  E-value=0.0035  Score=49.38  Aligned_cols=80  Identities=10%  Similarity=0.094  Sum_probs=57.1

Q ss_pred             CCCCCccEEEeecC-CCCc-----cCccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEcccCCCCcc----
Q 037889           15 SGLSSLDRLDLRGC-GLTA-----IPQEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSKCNMLLS----   79 (339)
Q Consensus        15 ~~l~~L~~L~Ls~n-~l~~-----lP~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~c~~l~~----   79 (339)
                      .+.++|++|+|+++ .+..     +-..+...++|+.|+|++|.+.     .+...+...+.|+.|+|++|.....    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35688999999975 4654     2345677789999999999987     2344566778999999999854421    


Q ss_pred             ----CCCCCCCCCEEecccC
Q 037889           80 ----LPELSLSLKWLDASNC   95 (339)
Q Consensus        80 ----lP~~~~~L~~L~~~~~   95 (339)
                          +.. -.+|+.|++.++
T Consensus        92 l~~aL~~-n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLV-TQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTT-TCCCSEEECCCC
T ss_pred             HHHHHHh-CCcCCEEECCCC
Confidence                111 146888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.18  E-value=0.008  Score=47.19  Aligned_cols=62  Identities=13%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             CCCCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCC
Q 037889           14 SSGLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCN   75 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~   75 (339)
                      +...++|++|+|++|.+..     +...+...+.|+.|+|++|.++.     +-..+..-+.|++|+|++|.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            4456789999999999874     33456667899999999999873     33456677889999999753

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.90  E-value=0.046  Score=42.34  Aligned_cols=62  Identities=11%  Similarity=0.171  Sum_probs=47.2

Q ss_pred             CCCCCccEEEeec-CCCCc-----cCccccCCCCCcEEEeecCCCcc-----CchhhhcCccCcEEEcccCCC
Q 037889           15 SGLSSLDRLDLRG-CGLTA-----IPQEIGCLSSLKELDICENNFES-----LPASIMQLSRLTYLYLSKCNM   76 (339)
Q Consensus        15 ~~l~~L~~L~Ls~-n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~L~~c~~   76 (339)
                      .+.++|++|+|++ +.|+.     +-..+...++|+.|+|++|.++.     +-..+...+.|+.|++++|..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            4568999999997 45654     33456788999999999999873     334566778999999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.38  E-value=0.087  Score=40.65  Aligned_cols=60  Identities=13%  Similarity=0.204  Sum_probs=45.8

Q ss_pred             CCCCCCccEEEeecCCCCc-----cCccccCCCCCcEEEeecCCCc-----cCchhhhcCccCcEEEccc
Q 037889           14 SSGLSSLDRLDLRGCGLTA-----IPQEIGCLSSLKELDICENNFE-----SLPASIMQLSRLTYLYLSK   73 (339)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~-----lP~~i~~l~~L~~L~Ls~n~l~-----~lP~~i~~l~~L~~L~L~~   73 (339)
                      +...++|++|+|++|.+..     +-..+...++|+.+++++|.+.     .+-..+...+.|+.++|+.
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeecc
Confidence            3467899999999999875     3345667899999999999986     2345667778888777764