Citrus Sinensis ID: 037898
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 287 | ||||||
| 224099099 | 313 | predicted protein [Populus trichocarpa] | 0.993 | 0.910 | 0.727 | 1e-118 | |
| 449462134 | 310 | PREDICTED: desiccation-related protein P | 0.951 | 0.880 | 0.750 | 1e-118 | |
| 356529093 | 313 | PREDICTED: desiccation-related protein P | 0.965 | 0.884 | 0.743 | 1e-118 | |
| 356555981 | 314 | PREDICTED: desiccation-related protein P | 0.954 | 0.872 | 0.729 | 1e-114 | |
| 297852412 | 315 | hypothetical protein ARALYDRAFT_891606 [ | 0.961 | 0.876 | 0.731 | 1e-114 | |
| 21593191 | 315 | dessication-related protein, putative [A | 0.961 | 0.876 | 0.728 | 1e-114 | |
| 18401988 | 315 | uncharacterized protein [Arabidopsis tha | 0.961 | 0.876 | 0.728 | 1e-113 | |
| 12323093 | 302 | dessication-related protein, putative; 7 | 0.961 | 0.913 | 0.728 | 1e-113 | |
| 296083215 | 474 | unnamed protein product [Vitis vinifera] | 0.996 | 0.603 | 0.703 | 1e-112 | |
| 359477103 | 303 | PREDICTED: desiccation-related protein P | 0.996 | 0.943 | 0.703 | 1e-112 |
| >gi|224099099|ref|XP_002311374.1| predicted protein [Populus trichocarpa] gi|222851194|gb|EEE88741.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/294 (72%), Positives = 243/294 (82%), Gaps = 9/294 (3%)
Query: 1 ILLLLPA---------GSYSAQLPQSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPN 51
ILLL+P GS + +PQSDIDLLEFPLNLEYLEAEFFL+GS+G GLD APN
Sbjct: 18 ILLLVPISCSSPFITDGSRDSPIPQSDIDLLEFPLNLEYLEAEFFLYGSMGQGLDNFAPN 77
Query: 52 LTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGTFAKV 111
LTMGGP P+G KKANLD + DV+ QFAWQEVGHL+AIK TV+GFPRPLLDLS +FAK
Sbjct: 78 LTMGGPKPLGAKKANLDPYTRDVIKQFAWQEVGHLRAIKDTVQGFPRPLLDLSTKSFAKT 137
Query: 112 MDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVE 171
MD AFGK L+PPFDPYA+S++YLIASY+IPYVGLTGYVGANP+LQ A SKRLVAGLL VE
Sbjct: 138 MDAAFGKRLSPPFDPYASSLHYLIASYVIPYVGLTGYVGANPKLQAAASKRLVAGLLAVE 197
Query: 172 SGQDAVIRALLYEKANETVKPYGVTVAEFTNKMSQLRNVLGRTGIKDEGLVVPELQGAEG 231
SGQDAVIR LLYE A + PYG+TVAEFTN++S LRN LG+ GIKDEGLVVP+ GAEG
Sbjct: 198 SGQDAVIRGLLYEYALIRLHPYGITVAEFTNRISDLRNKLGQEGIKDEGLVVPKKFGAEG 257
Query: 232 KIAGNVLAGDENSVAFDRNPEEILSIVYGSGDEHVPGGFYPKGADGRIARSHLH 285
+I GNVLAGDE S+ + R PEEIL +VYGSG+E PGGFYPKGADGRIA+SHL
Sbjct: 258 QIRGNVLAGDEYSIGYARTPEEILRVVYGSGNESTPGGFYPKGADGRIAKSHLQ 311
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462134|ref|XP_004148796.1| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus] gi|449511873|ref|XP_004164077.1| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356529093|ref|XP_003533131.1| PREDICTED: desiccation-related protein PCC13-62-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356555981|ref|XP_003546306.1| PREDICTED: desiccation-related protein PCC13-62-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297852412|ref|XP_002894087.1| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata] gi|297339929|gb|EFH70346.1| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|21593191|gb|AAM65140.1| dessication-related protein, putative [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|18401988|ref|NP_564518.1| uncharacterized protein [Arabidopsis thaliana] gi|332194113|gb|AEE32234.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|12323093|gb|AAG51530.1|AC051631_10 dessication-related protein, putative; 70055-71849 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|296083215|emb|CBI22851.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359477103|ref|XP_002273659.2| PREDICTED: desiccation-related protein PCC13-62-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 287 | ||||||
| TAIR|locus:2202593 | 315 | AT1G47980 "AT1G47980" [Arabido | 0.937 | 0.853 | 0.747 | 1.9e-106 | |
| TAIR|locus:2081645 | 317 | AT3G62730 "AT3G62730" [Arabido | 0.961 | 0.870 | 0.584 | 1.2e-81 |
| TAIR|locus:2202593 AT1G47980 "AT1G47980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 201/269 (74%), Positives = 228/269 (84%)
Query: 18 DIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQ 77
D LLEFPLNLEYLEAEFFLFG+LG GLDKVAPNLTMGGP+PIG +KANLD D++LQ
Sbjct: 43 DRKLLEFPLNLEYLEAEFFLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIILQ 102
Query: 78 FAWQEVGHLKAIKKTVKGFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIAS 137
FAWQEVGHL+AIKKTVKGF RP LDLS FAKVMDKAFG PPF+PYANS NYLIAS
Sbjct: 103 FAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIAS 162
Query: 138 YLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKANETVKPYGVTV 197
YL+PYVGLTGYVGANP+LQ S++LVAGLLGVESGQDAVIR +LY +A V PYGVTV
Sbjct: 163 YLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTV 222
Query: 198 AEFTNKMSQLRNVLGRTGIKDEGLVVPELQGAEGKIAGNVLAGDENSVAFDRNPEEILSI 257
A FT+K+S LRN LG+ G+KDEGL+VP+ GAEG++ GNVL G+E S++FDR PEEIL I
Sbjct: 223 AAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILRI 282
Query: 258 VYGSGDEHVPGGFYPKGADGRIARSHLHT 286
VYGSG+E VPGGFYPKGADG IA+S+L T
Sbjct: 283 VYGSGNESVPGGFYPKGADGEIAKSYLVT 311
|
|
| TAIR|locus:2081645 AT3G62730 "AT3G62730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.VIII.834.1 | hypothetical protein (267 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 287 | |||
| pfam13668 | 137 | pfam13668, Ferritin_2, Ferritin-like domain | 9e-45 |
| >gnl|CDD|222304 pfam13668, Ferritin_2, Ferritin-like domain | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 9e-45
Identities = 57/170 (33%), Positives = 81/170 (47%), Gaps = 35/170 (20%)
Query: 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVL 76
SD+D+L F L LEYLEA F+L G+GLD KA LDA +
Sbjct: 1 SDVDILNFALTLEYLEAAFYLQALAGFGLD--------------DFAKAGLDAAVRALAE 46
Query: 77 QFAWQEVGHLKAIKKTV--KGFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYL 134
+ A EV H++ +K + PRP D PFDP+ + +++L
Sbjct: 47 EIADHEVAHVRFLKAALGGAPVPRPTFDF-------------------PFDPFTDRLSFL 87
Query: 135 IASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYE 184
+Y++ VG++ Y+GA P L + A +LGVE+ AVIR LL E
Sbjct: 88 ALAYVLEDVGVSAYLGAAPLLSNKDYLAAAASILGVEARHAAVIRTLLGE 137
|
This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Length = 137 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 287 | |||
| PF13668 | 137 | Ferritin_2: Ferritin-like domain | 100.0 | |
| cd01045 | 139 | Ferritin_like_AB Uncharacterized family of ferriti | 98.5 | |
| cd00657 | 130 | Ferritin_like Ferritin-like superfamily of diiron- | 98.4 | |
| PF02915 | 137 | Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru | 97.74 | |
| cd01048 | 135 | Ferritin_like_AB2 Uncharacterized family of ferrit | 97.63 | |
| COG1633 | 176 | Uncharacterized conserved protein [Function unknow | 96.94 | |
| cd07908 | 154 | Mn_catalase_like Manganese catalase-like protein, | 96.71 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 96.59 | |
| PRK13456 | 186 | DNA protection protein DPS; Provisional | 96.41 | |
| cd01044 | 125 | Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin | 96.18 | |
| cd01052 | 148 | DPSL DPS-like protein, ferritin-like diiron-bindin | 95.71 | |
| cd00907 | 153 | Bacterioferritin Bacterioferritin, ferritin-like d | 95.39 | |
| PF13668 | 137 | Ferritin_2: Ferritin-like domain | 95.08 | |
| cd07908 | 154 | Mn_catalase_like Manganese catalase-like protein, | 93.54 | |
| cd01045 | 139 | Ferritin_like_AB Uncharacterized family of ferriti | 93.25 | |
| cd01051 | 156 | Mn_catalase Manganese catalase, ferritin-like diir | 93.14 | |
| PRK10635 | 158 | bacterioferritin; Provisional | 91.35 | |
| PF02915 | 137 | Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru | 88.43 | |
| cd01041 | 134 | Rubrerythrin Rubrerythrin, ferritin-like diiron-bi | 88.4 | |
| TIGR02284 | 139 | conserved hypothetical protein. Members of this pr | 87.87 | |
| cd00657 | 130 | Ferritin_like Ferritin-like superfamily of diiron- | 86.32 | |
| PF09968 | 162 | DUF2202: Uncharacterized protein domain (DUF2202); | 85.63 | |
| TIGR00754 | 157 | bfr bacterioferritin. Bacterioferritin is a homomu | 82.3 |
| >PF13668 Ferritin_2: Ferritin-like domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=234.43 Aligned_cols=134 Identities=39% Similarity=0.685 Sum_probs=125.1
Q ss_pred CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhh-c-
Q 037898 17 SDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTV-K- 94 (287)
Q Consensus 17 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aL-g- 94 (287)
+|++||||||+|||||.+||.+++.+++.++ . +..+++.+++++++|+.||..|+++|+++| |
T Consensus 1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~ 65 (137)
T PF13668_consen 1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N--------------KAALDPEVRDLFQEIADQEQGHVDFLQAALEGG 65 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h--------------hccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999999998877653 1 355789999999999999999999999999 6
Q ss_pred -CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhh
Q 037898 95 -GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESG 173 (287)
Q Consensus 95 -av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~ 173 (287)
++++|.+|+ +||||+|+.+||..|+.||++|+++|+|++++++|++++.++++|++||++
T Consensus 66 ~~~~~~~~~~-------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~ 126 (137)
T PF13668_consen 66 RPVPPPAYDF-------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEAR 126 (137)
T ss_pred CCCCCCcccc-------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 788898887 489999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 037898 174 QDAVIRALLYE 184 (287)
Q Consensus 174 Haa~IR~lL~~ 184 (287)
|++|||++|+|
T Consensus 127 H~~~ir~ll~~ 137 (137)
T PF13668_consen 127 HAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
|
|
| >cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria | Back alignment and domain information |
|---|
| >cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins | Back alignment and domain information |
|---|
| >PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] | Back alignment and domain information |
|---|
| >cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria | Back alignment and domain information |
|---|
| >COG1633 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain | Back alignment and domain information |
|---|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >PRK13456 DNA protection protein DPS; Provisional | Back alignment and domain information |
|---|
| >cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain | Back alignment and domain information |
|---|
| >cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain | Back alignment and domain information |
|---|
| >cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain | Back alignment and domain information |
|---|
| >PF13668 Ferritin_2: Ferritin-like domain | Back alignment and domain information |
|---|
| >cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain | Back alignment and domain information |
|---|
| >cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria | Back alignment and domain information |
|---|
| >cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain | Back alignment and domain information |
|---|
| >PRK10635 bacterioferritin; Provisional | Back alignment and domain information |
|---|
| >PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] | Back alignment and domain information |
|---|
| >cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain | Back alignment and domain information |
|---|
| >TIGR02284 conserved hypothetical protein | Back alignment and domain information |
|---|
| >cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins | Back alignment and domain information |
|---|
| >PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function | Back alignment and domain information |
|---|
| >TIGR00754 bfr bacterioferritin | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 287 | |||
| 2ib0_A | 170 | Conserved hypothetical alanine rich protein; 4-hel | 98.12 | |
| 2oh3_A | 167 | Rubrerythrin, COG1633: uncharacterized conserved p | 97.97 | |
| 2fzf_A | 175 | Hypothetical protein; structural genomics, southea | 97.81 | |
| 1vjx_A | 157 | Putative ferritin-like DIIRON-carboxylate protein; | 97.75 | |
| 2qqy_A | 149 | Sigma B operon; dodecameric alpha-helical, ferriti | 96.74 | |
| 3fse_A | 365 | Two-domain protein containing DJ-1/THIJ/PFPI-like | 96.51 | |
| 3q4o_A | 196 | Uncharacterized protein MJ0754; ferritin-like prot | 96.28 | |
| 3gvy_A | 161 | Bacterioferritin; iron storage, DI-iron, ferroxida | 96.18 | |
| 4etr_A | 153 | Putative uncharacterized protein; DUF2383, domain | 95.97 | |
| 1nfv_A | 179 | Bacterioferritin; 24 subunits in the active molecu | 95.83 | |
| 1jgc_A | 161 | Bacterioferritin, BFR; iron storage protein, metal | 95.75 | |
| 3r2k_A | 154 | Bacterioferritin, BFR; bacterial ferritin, iron bi | 95.66 | |
| 2fkz_A | 155 | Bacterioferritin; ferroxidase, DIIRON site, iron T | 95.4 | |
| 2y3q_A | 158 | Bacterioferritin; metal binding protein, redox; HE | 95.19 | |
| 3uoi_A | 161 | Bacterioferritin, BFR; structural genomics, TB str | 95.01 | |
| 3qb9_A | 174 | Bacterioferritin, BFR; cytosol, structural genomic | 94.84 | |
| 1j30_A | 144 | 144AA long hypothetical rubrerythrin; sulerythrin, | 94.62 | |
| 2oh3_A | 167 | Rubrerythrin, COG1633: uncharacterized conserved p | 94.26 | |
| 4am5_A | 159 | Bacterioferritin; metal binding protein, ferroxida | 94.18 | |
| 3fvb_A | 182 | Bacterioferritin; niaid, ssgcid, decode, structura | 93.5 | |
| 1vjx_A | 157 | Putative ferritin-like DIIRON-carboxylate protein; | 93.03 | |
| 2vzb_A | 170 | Putative bacterioferritin-related protein; DPS, DP | 92.11 | |
| 2fzf_A | 175 | Hypothetical protein; structural genomics, southea | 91.1 | |
| 4di0_A | 144 | Rubrerythrin; ssgcid, seattle structural genomics | 88.4 | |
| 1lko_A | 191 | Rubrerythrin all-iron(II) form; reduced form, DIIR | 87.15 | |
| 1ji5_A | 142 | DLP-1; dodecamer, four-helix bundle, metal transpo | 85.69 | |
| 1n1q_A | 149 | DPS protein; four-helix bundle, unknown function; | 84.99 | |
| 2jd6_0 | 174 | Ferritin homolog, ferritin; metal transport, iron, | 83.18 | |
| 1jig_A | 146 | DLP-2; dodecamer, four-helix bundle, metal transpo | 81.45 | |
| 1krq_A | 167 | Ferritin; H-chain like four-helix bundle, binding | 81.13 | |
| 3oj5_A | 189 | Ferritin family protein; ferroxidase, cytosol, oxi | 80.76 |
| >2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structur initiative; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=68.65 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=104.3
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK- 94 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg- 94 (287)
..|+++||-||..||-- -|-+++- .+.+++.+++.+.+...+...|...|+.+|.
T Consensus 20 ~~d~~aL~~ALaaEhaA--IyaYGv~----------------------~a~l~~~~~~~a~~~~~~HrarRD~L~~~l~~ 75 (170)
T 2ib0_A 20 SADNAALCDALAVEHAT--IYGYGIV----------------------SALSPPGVNFLVADALKQHRHRRDDVIVMLSA 75 (170)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHH----------------------HHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH--HHHHHHH----------------------HhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999943 3333332 1346678899999999999999999999986
Q ss_pred --CC---CCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHH
Q 037898 95 --GF---PRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLG 169 (287)
Q Consensus 95 --av---~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~ 169 (287)
+. ++|.|++ ||+ ..|..+-+..+..+|.=...+|.+..+...+++.++.|+++|+
T Consensus 76 ~G~~pp~a~aaY~l-------------------P~~-v~d~asa~~lAa~lE~~~A~ay~~~v~~a~~~~~R~~A~~aL~ 135 (170)
T 2ib0_A 76 RGVTAPIAAAGYQL-------------------PMQ-VSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALT 135 (170)
T ss_dssp TTCCCCCCCSSCCC-------------------SSC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred cCCCCCCCcCcCCC-------------------CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22 2333433 454 5888999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhh
Q 037898 170 VESGQDAVIRALLYEKA 186 (287)
Q Consensus 170 VEA~Haa~IR~lL~~~~ 186 (287)
.+|.|+...|..+.+..
T Consensus 136 ~aAvr~a~wr~alG~~P 152 (170)
T 2ib0_A 136 ESAVMATRWNRVLGAWP 152 (170)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999998865
|
| >2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 | Back alignment and structure |
|---|
| >2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} | Back alignment and structure |
|---|
| >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
| >3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A | Back alignment and structure |
|---|
| >3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* | Back alignment and structure |
|---|
| >1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A | Back alignment and structure |
|---|
| >2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* | Back alignment and structure |
|---|
| >2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* | Back alignment and structure |
|---|
| >3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* | Back alignment and structure |
|---|
| >3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* | Back alignment and structure |
|---|
| >1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 | Back alignment and structure |
|---|
| >4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* | Back alignment and structure |
|---|
| >3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} | Back alignment and structure |
|---|
| >1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A | Back alignment and structure |
|---|
| >1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 | Back alignment and structure |
|---|
| >1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 | Back alignment and structure |
|---|
| >3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 287 | |||
| d2ib0a1 | 142 | Hypothetical protein Rv2844 {Mycobacterium tubercu | 99.75 | |
| d2fzfa1 | 158 | Hypothetical protein PF1190 {Archaeon Pyrococcus f | 98.66 | |
| d2oh3a1 | 152 | Uncharacterized protein AMB4284 homologue {Magneto | 98.65 | |
| d1vjxa_ | 149 | Hypothetical protein TM1526 {Thermotoga maritima [ | 98.46 | |
| d2oh3a1 | 152 | Uncharacterized protein AMB4284 homologue {Magneto | 96.68 | |
| d1nf4a_ | 169 | Bacterioferritin (cytochrome b1) {Desulfovibrio de | 96.61 | |
| d2fkza1 | 154 | Bacterioferritin (cytochrome b1) {Azotobacter vine | 96.33 | |
| d1jgca_ | 160 | Bacterioferritin (cytochrome b1) {Rhodobacter caps | 95.68 | |
| d2htna1 | 158 | Bacterioferritin (cytochrome b1) {Escherichia coli | 95.63 | |
| d1lkoa1 | 146 | Rubrerythrin, N-terminal domain {Desulfovibrio vul | 95.51 | |
| d2ib0a1 | 142 | Hypothetical protein Rv2844 {Mycobacterium tubercu | 94.75 | |
| d1vjxa_ | 149 | Hypothetical protein TM1526 {Thermotoga maritima [ | 94.56 | |
| d2fzfa1 | 158 | Hypothetical protein PF1190 {Archaeon Pyrococcus f | 93.38 | |
| d1yuza1 | 135 | Nigerythrin, N-terminal domain {Desulfovibrio vulg | 92.31 | |
| d1j30a_ | 141 | Hypothetical rubrerythrin {Archaeon Sulfolobus tok | 89.42 |
| >d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Rv2844-like domain: Hypothetical protein Rv2844 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=1.3e-18 Score=142.53 Aligned_cols=132 Identities=12% Similarity=-0.009 Sum_probs=108.4
Q ss_pred CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCCCCccCCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-
Q 037898 16 QSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFANDVVLQFAWQEVGHLKAIKKTVK- 94 (287)
Q Consensus 16 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~~~~~~~eia~~E~~HV~~L~~aLg- 94 (287)
.+|.++||+||.+|| +.+|.+++.. ..+++.+++++++++.||..|+..|++.+.
T Consensus 4 ~~d~~~L~~AL~~E~--aaiy~Y~~a~----------------------~~~~~~~~~~~~~~~~~e~~H~~~L~~~i~~ 59 (142)
T d2ib0a1 4 SADNAALCDALAVEH--ATIYGYGIVS----------------------ALSPPGVNFLVADALKQHRHRRDDVIVMLSA 59 (142)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHH----------------------HHSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH--HHHHHHHHHh----------------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999 5588876532 224577899999999999999999999886
Q ss_pred CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHhHHHhhhhh
Q 037898 95 GFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQ 174 (287)
Q Consensus 95 av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~H 174 (287)
....|..... ++. .-++++|..++|..+..+|..++.+|.+++..++|+++++++++||++||+|
T Consensus 60 lgg~p~~~~~------------~~~---~~~~~td~~~~l~~a~~~E~~a~~~Y~~~~~~~~d~~~r~la~~il~~ea~h 124 (142)
T d2ib0a1 60 RGVTAPIAAA------------GYQ---LPMQVSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVM 124 (142)
T ss_dssp TTCCCCCCCS------------SCC---CSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCcccc------------ccc---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 2233332211 111 1246789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 037898 175 DAVIRALLYEKA 186 (287)
Q Consensus 175 aa~IR~lL~~~~ 186 (287)
++++|..+....
T Consensus 125 a~~~r~~~~~~p 136 (142)
T d2ib0a1 125 ATRWNRVLGAWP 136 (142)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHhcCCCC
Confidence 999999998764
|
| >d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} | Back information, alignment and structure |
|---|
| >d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} | Back information, alignment and structure |
|---|
| >d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
| >d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
| >d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
| >d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
| >d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|