Citrus Sinensis ID: 037904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MSSYEKWGRQIVRRQFPQEPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEVRLSCHKRAKMQNDFDCVEQIAKKDSDSWKKNVDEGIKLSATAI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccccccccccHHcHHHHHHHcccccccccccccccccccEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHccccccccccHHHHHcccEEEccccHHHHHcccHHHHHHHHHEEEccccHHHHHcHHHHccHHHHHHcccccccHHcccHHHHHHccccHHHHHccccHcccccEEEEEEccHHHHHccHHHHHHHHHHHHccccccccHHHcccccHccc
Coil and Loop (DISEMBL)
MSSYEKWGRQIVrrqfpqepgncsrlWEEADTLWEVlsdgtdikeplSIELLFGLVQLTLngcknlehlPRTISALKYLSTLNLSgllkfrefpektssrDELLEIHLEGTAIRGLPASIELLfgnaapnlknvpetlgnvESLEVRLSCHKRAKMQNDFDCVEQIAKKDSDSWKKNVDEGIKLSATAI
Flexible Loop (DISEMBL)
mssyekwgrqivrrqfpqepgncsRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEVRLSCHKRAKMQNDFDCVEQiakkdsdswkknvdegiklsatai
Low Complexity Region (SEG)
MSSYEKWGRQIVRRQFPQEPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEVRLSCHKRAKMQNDFDCVEQIAKKDSDSWKKNVDEGIKLSATAI
Disordered region (IsUnstruct)
**********IV********GNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE*****DELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEVRLSCHKRAKMQNDFDCVEQ************************
Disordered Region (DISOPRED)
MSSYEKWGRQIVRRQFPQEPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEVRLSCHKRAKMQNDFDCVEQIAKKDSDSWKKNVDEGIKLSATAI
Disordered Region (DISEMBL)
MSSYEKWGRQIVRRQFPQEPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEVRLSCHKRAKMQNDFDCVEQIAKKDSDSWKKNVDEGIKLSATAI
Disordered Region (DISPRO)
**SYEKWGRQIVRRQFPQEPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEVRLSCHKRAKMQNDFDCVEQIAKKDSDSWKKNVDEGIKLSAT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSYEKWGRQIVRRQFPQEPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEVRLSCHKRAKMQNDFDCVEQIAKKDSDSWKKNVDEGIKLSATAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.534	0.053	0.380	2e-07
P23466	1839	Adenylate cyclase OS=Lach	N/A	no	0.629	0.064	0.345	3e-05
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.624	0.090	0.323	0.0001

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 23   CSRLW---EEADTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKY 78
            CS+L    E +  + E+   GT I+E P SI+ L  L +L L   ++L++LP +I  LK+
Sbjct: 1338 CSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKH 1397

Query: 79   LSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELL 123
            L TLNLSG +    FP+ +     L  + L  T I+ LP+SI  L
Sbjct: 1398 LETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYL 1442

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|P23466|CYAA_LACKL Adenylate cyclase OS=Lachancea kluyveri GN=CYR1 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 62/136 (45%), Gaps = 17/136 (12%)

Query: 52  LFGLVQLTLNG--CKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE 109
           +F L  LT+    C NLE LP   S LK L  L++S   KF  +PE  +S   LL+I L 
Sbjct: 699 IFKLNNLTIVNLQCNNLERLPPGFSKLKNLQLLDISSN-KFVNYPEVINSCTNLLQIDLS 757

Query: 110 GTAIRGLPASIELLFGNAAPNLKNVPET-------LGNVESLEVR------LSCHKRAKM 156
              I  LP SI  L   A  NL N   T       + N+ +L +R      + CH    +
Sbjct: 758 YNKIHSLPVSINQLVKLAKMNLFNNRLTSVGDLSQMKNLRTLNLRCNRVTSIECHA-PNL 816

Query: 157 QNDFDCVEQIAKKDSD 172
           QN F    +I+  D D
Sbjct: 817 QNLFLTDNRISTFDDD 832

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Lachancea kluyveri (taxid: 4934)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 18/136 (13%)

Query: 14  RQFPQEPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTI 73
           R FP    N   L+ E   + E+         P +I  L  LV+L +  C  LE LP  +
Sbjct: 857 RSFPLISTNIVWLYLENTAIEEI---------PSTIGNLHRLVRLEMKKCTGLEVLPTDV 907

Query: 74  SALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLP-----ASIELLFGNAA 128
           + L  L TL+LSG    R FP  + S   L   +LE TAI  +P      +++ L  N  
Sbjct: 908 N-LSSLETLDLSGCSSLRSFPLISESIKWL---YLENTAIEEIPDLSKATNLKNLKLNNC 963

Query: 129 PNLKNVPETLGNVESL 144
            +L  +P T+GN++ L
Sbjct: 964 KSLVTLPTTIGNLQKL 979

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
297734815	1651	unnamed protein product [Vitis vinifera]	0.671	0.076	0.398	3e-14
297734813	2101	unnamed protein product [Vitis vinifera]	0.656	0.059	0.4	5e-14
297734812	610	unnamed protein product [Vitis vinifera]	0.560	0.173	0.437	3e-13
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.804	0.122	0.351	4e-13
147856100	762	hypothetical protein VITISV_003327 [Viti	0.571	0.141	0.434	7e-13
359493208	1695	PREDICTED: TMV resistance protein N-like	0.613	0.068	0.414	8e-13
296089437	1486	unnamed protein product [Vitis vinifera]	0.666	0.084	0.380	1e-12
147789262	1256	hypothetical protein VITISV_038321 [Viti	0.666	0.100	0.380	1e-12
225460287	1554	PREDICTED: TMV resistance protein N-like	0.666	0.081	0.380	1e-12
297734818	867	unnamed protein product [Vitis vinifera]	0.671	0.146	0.383	1e-12

>gi|297734815|emb|CBI17049.3| unnamed protein product [Vitis vinifera]

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 6/133 (4%)

Query: 20  PGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYL 79
           P  C +   +  +  ++   G+ I E  +IE       L L  CKNLE LP +I  LK L
Sbjct: 734 PTICRKCQADVQSRRKLCLKGSAINELPTIECPLEFDSLCLRECKNLERLPSSICELKSL 793

Query: 80  STLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFG----NAA--PNLKN 133
           +TLN SG  + R FPE     + L  +HL+GTAI+ LPASI+ L G    N A   NL +
Sbjct: 794 TTLNCSGCSRLRSFPEILEDVENLRNLHLDGTAIKELPASIQYLRGLQCLNLADCTNLVS 853

Query: 134 VPETLGNVESLEV 146
           +PET+ N+ SL++
Sbjct: 854 LPETICNLSSLKI 866

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734813|emb|CBI17047.3| unnamed protein product [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 6/130 (4%)

Query: 23  CSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTL 82
           C    E+  +LW++   G  I E  +IE    L +L L  CKNLE LP +I  LK L+TL
Sbjct: 834 CRECQEDVQSLWKLCLKGNAINELPTIECPHKLNRLCLRECKNLELLPSSICELKSLTTL 893

Query: 83  NLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFG----NAA--PNLKNVPE 136
             SG  + R FPE     + + E+HL+GTAI  LPASI+ L G    N A   NL ++PE
Sbjct: 894 FCSGCSRLRSFPEILEDVENIRELHLDGTAIEELPASIQYLRGLQHLNLADCSNLVSLPE 953

Query: 137 TLGNVESLEV 146
            +  +++L++
Sbjct: 954 AICKLKTLKI 963

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734812|emb|CBI17046.3| unnamed protein product [Vitis vinifera]

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 64/112 (57%), Gaps = 6/112 (5%)

Query: 40  GTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS 99
           G  I E  +IE    L  L L  CKNLEHLP +I  LK L+TL  SG  + R FPE    
Sbjct: 305 GNAINELPTIECPLELDSLCLRECKNLEHLPSSICELKSLTTLFCSGCSRLRSFPEIVED 364

Query: 100 RDELLEIHLEGTAIRGLPASIELLFG------NAAPNLKNVPETLGNVESLE 145
            + L  +HL+GTAI  LPASI+ L G      +   NL ++PE++ N+ SL+
Sbjct: 365 VENLRVLHLDGTAIEELPASIQYLRGLQYLNLSDCTNLVSLPESICNLSSLK 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 16/168 (9%)

Query: 14  RQFPQEPGNCSRLWEEADTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRT 72
           + FP+  GN   L E       +  DGT I E P SI  L GL+ L L  CK L+ LP +
Sbjct: 614 KNFPEIQGNMQHLSE-------LYLDGTAISELPFSIGYLTGLILLDLENCKRLKSLPSS 666

Query: 73  ISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLK 132
           I  LK L TL LS   K   FPE   + + L ++ L+GTA++ L  SIE L G  + NL+
Sbjct: 667 ICKLKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLR 726

Query: 133 N------VPETLGNVESLEVRL--SCHKRAKMQNDFDCVEQIAKKDSD 172
           +      +P ++GN++SLE  +   C K  ++  +   ++ + K  +D
Sbjct: 727 DCKNLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQAD 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856100|emb|CAN82453.1| hypothetical protein VITISV_003327 [Vitis vinifera]

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 39  DGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKT 97
           DGT IKE P SI+ L  LV+     CKNLE LPR+I  LKYL  L  +   K   FPE  
Sbjct: 199 DGTAIKEIPSSIDSLSILVEFYTRNCKNLESLPRSICRLKYLQVLCCTNCSKLGSFPEVM 258

Query: 98  SSRDELLEIHLEGTAIRGLPASIELLFG------NAAPNLKNVPETLGNVESLEV 146
            + + L E+HL GTAI+ LP+SIE L G       +   L  +P  + N++SL+ 
Sbjct: 259 ENMNNLRELHLHGTAIQDLPSSIENLKGLEFLDLASCKKLVTLPTHICNLKSLKT 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493208|ref|XP_002269054.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 7/123 (5%)

Query: 31   DTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLK 89
            + L ++  DGT IKE P SI+ L  LV+     CKNLE LPR+I  LKYL  L  +   K
Sbjct: 1134 ECLQKLYLDGTAIKEIPSSIDSLSILVEFYTRNCKNLESLPRSICRLKYLQVLCCTNCSK 1193

Query: 90   FREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFG------NAAPNLKNVPETLGNVES 143
               FPE   + + L E+HL GTAI+ LP+SIE L G       +   L  +P  + N++S
Sbjct: 1194 LGSFPEVMENMNNLRELHLHGTAIQDLPSSIENLKGLEFLDLASCKKLVTLPTHICNLKS 1253

Query: 144  LEV 146
            L+ 
Sbjct: 1254 LKT 1256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089437|emb|CBI39256.3| unnamed protein product [Vitis vinifera]

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 8/134 (5%)

Query: 41   TDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSR 100
            T I E L+IE L G+  L L  CK LE LP  I  LK L+T + SG  K + FPE T   
Sbjct: 1009 TAINELLNIECLSGIQNLCLRNCKRLESLPSDIYKLKSLTTFSCSGCSKLQSFPEITEDM 1068

Query: 101  DELLEIHLEGTAIRGLPASIELLFG------NAAPNLKNVPETLGNVESLEVRL--SCHK 152
              L E+ L+GT+++ LP+SI+ L G          NL N+P+ + N+ SLE  +   C K
Sbjct: 1069 KILRELRLDGTSLKELPSSIQHLQGLKYLDLENCKNLLNIPDNICNLRSLETLIVSGCSK 1128

Query: 153  RAKMQNDFDCVEQI 166
              K+  +   + Q+
Sbjct: 1129 LNKLPKNLGSLTQL 1142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789262|emb|CAN62576.1| hypothetical protein VITISV_038321 [Vitis vinifera]

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 8/134 (5%)

Query: 41  TDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSR 100
           T I E L+IE L G+  L L  CK LE LP  I  LK L+T + SG  K + FPE T   
Sbjct: 842 TAINELLNIECLSGIQNLCLRNCKRLESLPSDIYKLKSLTTFSCSGCSKLQSFPEITEDM 901

Query: 101 DELLEIHLEGTAIRGLPASIELLFG------NAAPNLKNVPETLGNVESLEVRL--SCHK 152
             L E+ L+GT+++ LP+SI+ L G          NL N+P+ + N+ SLE  +   C K
Sbjct: 902 KILRELRLDGTSLKELPSSIQHLQGLKYLDLENCKNLLNIPDNICNLRSLETLIVSGCSK 961

Query: 153 RAKMQNDFDCVEQI 166
             K+  +   + Q+
Sbjct: 962 LNKLPKNLGSLTQL 975

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460287|ref|XP_002279207.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 8/134 (5%)

Query: 41   TDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSR 100
            T I E L+IE L G+  L L  CK LE LP  I  LK L+T + SG  K + FPE T   
Sbjct: 1077 TAINELLNIECLSGIQNLCLRNCKRLESLPSDIYKLKSLTTFSCSGCSKLQSFPEITEDM 1136

Query: 101  DELLEIHLEGTAIRGLPASIELLFG------NAAPNLKNVPETLGNVESLEVRL--SCHK 152
              L E+ L+GT+++ LP+SI+ L G          NL N+P+ + N+ SLE  +   C K
Sbjct: 1137 KILRELRLDGTSLKELPSSIQHLQGLKYLDLENCKNLLNIPDNICNLRSLETLIVSGCSK 1196

Query: 153  RAKMQNDFDCVEQI 166
              K+  +   + Q+
Sbjct: 1197 LNKLPKNLGSLTQL 1210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734818|emb|CBI17052.3| unnamed protein product [Vitis vinifera]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 20  PGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYL 79
           P  C    E+  +  ++   G  I E  +IE    L  L L  CKNLE LP +I   K L
Sbjct: 454 PTICRECQEDVQSRRKLCLKGNAINELPTIECPLELDSLCLRECKNLERLPSSICEFKSL 513

Query: 80  STLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKN------ 133
           +TL  SG    R FPE     + L E+HL+GTAI  LPASI+ L G    NL +      
Sbjct: 514 TTLFCSGCSGLRSFPEILEDVENLRELHLDGTAIEELPASIQYLRGLQYLNLSDCTDLVS 573

Query: 134 VPETLGNVESLEV 146
           +PE++ N+ SL++
Sbjct: 574 LPESICNLSSLKI 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.613	0.096	0.369	1.2e-10
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.507	0.076	0.42	2.3e-09
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.502	0.073	0.371	1e-08
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.624	0.095	0.392	1.3e-08
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.650	0.100	0.328	3.3e-08
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.640	0.103	0.348	4e-08
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.534	0.053	0.380	4.3e-08
TAIR|locus:2122199	1607	AT4G36140 [Arabidopsis thalian	0.465	0.054	0.405	9.4e-07
TAIR|locus:2174900	968	AT5G40060 [Arabidopsis thalian	0.449	0.087	0.413	1.7e-06
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.767	0.123	0.307	4.4e-06

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 44/119 (36%), Positives = 60/119 (50%)

Query:    30 ADTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLL 88
             +D L  +  DGT IKE P  I  L  LV L + GCK L+ LP ++  LK L  L LSG  
Sbjct:   749 SDKLEALYLDGTAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCS 808

Query:    89 KFREFPEKTSSRDELLEIHLEGTAIRGLPA--SIELLFGNAAPNLKNVPETLGNVESLE 145
             K  EFPE   +   L  + L+ TAI+ +P   S+  L  N    +  +P+ L     L+
Sbjct:   809 KLNEFPETWGNMSRLEILLLDETAIKDMPKILSVRRLCLNKNEKISRLPDLLNKFSQLQ 867

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 42/100 (42%), Positives = 53/100 (53%)

Query:    22 NCSRLWEE---ADTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALK 77
             NCSR  E    A  L E+  DGT IKE P +I  L  L+ L L  CKNL  LP +I  LK
Sbjct:   740 NCSRFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLK 799

Query:    78 YLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLP 117
              +  + LSG      FPE   +   L  + L+GTAI+ +P
Sbjct:   800 AIQEIILSGCSSLESFPEVNQNLKHLKTLLLDGTAIKKIP 839

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 39/105 (37%), Positives = 59/105 (56%)

Query:    52 LFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGT 111
             L  L  L L+GC+ LE+LP T+  L  L TL +SG L   EFP + S+  E+L I    T
Sbjct:   762 LVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFP-RVSTSIEVLRI--SET 818

Query:   112 AIRGLPASI----ELLFGNAAPN--LKNVPETLGNVESLE-VRLS 149
             +I  +PA I    +L   + + N  L ++P ++  + SLE ++LS
Sbjct:   819 SIEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLS 863

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 53/135 (39%), Positives = 75/135 (55%)

Query:    29 EADTLWEVLSDG-TDIKE-PLSIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLS 85
             EA  L  +  +G T +KE P  ++ +  LV L L GC +L  LP+ T ++LK   TL LS
Sbjct:   679 EAPNLLRLNLEGCTSLKELPDEMKDMTNLVFLNLRGCTSLLSLPKITTNSLK---TLILS 735

Query:    86 GLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASI----ELLFGNA--APNLKNVPETLG 139
             G   F+ F E  S  + L  ++L GT I GLP +I     L+F N     NL  +P+ LG
Sbjct:   736 GCSSFQTF-EVIS--EHLESLYLNGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPDCLG 792

Query:   140 NVESL-EVRLS-CHK 152
              ++SL E++LS C K
Sbjct:   793 ELKSLQELKLSRCSK 807

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 43/131 (32%), Positives = 67/131 (51%)

Query:    22 NCSRLWEE---ADTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALK 77
             NCS L E    +  L  +  DGT IKE PL+  +L  LV L + GC  L+  P  +  LK
Sbjct:   708 NCSNLKEFRVISQNLETLYLDGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLK 767

Query:    78 YLSTLNLSGLLKFREFPEKTSSRDELLEI-HLEGTAIRGLP--ASIELLFGNAAPNLKNV 134
              L  L LS   K + FP     R ++LEI  L+ T I  +P  +S++ L  +   ++ ++
Sbjct:   768 ALKELILSDCWKLQNFPA-ICERIKVLEILRLDTTTITEIPMISSLQCLCLSKNDHISSL 826

Query:   135 PETLGNVESLE 145
             P+ +  +  L+
Sbjct:   827 PDNISQLSQLK 837

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 45/129 (34%), Positives = 66/129 (51%)

Query:    22 NCSRLWEEA---DTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALK 77
             NCS   E     + L  +  DGT I + P ++  L  LV L +  CK LE +P  +S LK
Sbjct:   714 NCSNFKEFPLIPENLKALYLDGTSISQLPDNVGNLKRLVLLNMKDCKVLETIPTCVSELK 773

Query:    78 YLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPA--SIELLFGNAAPNLKNVP 135
              L  L LSG  K +EFPE   S  ++L   L+GT+I+ +P   S++ L  +   +L  +P
Sbjct:   774 TLQKLVLSGCSKLKEFPEINKSSLKILL--LDGTSIKTMPQLPSVQYLCLSRNDHLIYLP 831

Query:   136 ETLGNVESL 144
               +  V  L
Sbjct:   832 AGINQVSQL 840

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 40/105 (38%), Positives = 59/105 (56%)

Query:    23 CSRLW---EEADTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKY 78
             CS+L    E +  + E+   GT I+E P SI+ L  L +L L   ++L++LP +I  LK+
Sbjct:  1338 CSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKH 1397

Query:    79 LSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELL 123
             L TLNLSG +    FP+ +     L  + L  T I+ LP+SI  L
Sbjct:  1398 LETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYL 1442

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2122199 AT4G36140 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 41/101 (40%), Positives = 56/101 (55%)

Query:    42 DIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRD 101
             DI +  +IEL+       L GC+ L+  P T   L++L  +NLSG  + + FPE + + +
Sbjct:  1050 DILKAQNIELI------DLQGCRKLQRFPAT-GQLQHLRVVNLSGCREIKSFPEVSPNIE 1102

Query:   102 ELLEIHLEGTAIRGLPASIELLFGNAAPN--LKNV-PETLG 139
             EL   HL+GT IR LP SI  LF  A  N  L N+ PE  G
Sbjct:  1103 EL---HLQGTGIRELPISIVSLFEQAKLNRELFNLLPEFSG 1140

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2174900 AT5G40060 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 38/92 (41%), Positives = 53/92 (57%)

Query:    31 DTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLK 89
             +TL+  LSD   + E P  I+ L  L++L++  CKNLE LP T +  KYL  L+LSG  K
Sbjct:   591 NTLY--LSDIPSLVELPCGIQNLKKLMELSIRRCKNLESLP-TGANFKYLDYLDLSGCSK 647

Query:    90 FREFPEKTSSRDELLEIHLEGTAIRGLPASIE 121
              R FP+ +S+   L    L  T I  +P+ IE
Sbjct:   648 LRSFPDISSTISCLC---LNRTGIEEVPSWIE 676

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 47/153 (30%), Positives = 73/153 (47%)

Query:    22 NCSRLWE-E--ADTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALK 77
             +CS+L E E  ++ L E+  DGT IK  P +   L  LV L + GC  LE LP+ +   K
Sbjct:   779 DCSKLEEFEVISENLEELYLDGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQK 838

Query:    78 YLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPA--SIELLFGNAAPNLKNVP 135
              L  L LSG  K    P        L  + L+GT IR +P   S++ L  +    + N+ 
Sbjct:   839 ALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIPKIKSLKCLCLSRNIAMVNLQ 898

Query:   136 ETLGNVESLE--VRLSCHKRAKMQNDFDCVEQI 166
             + L +  +L+  V  +C     + +   C+E +
Sbjct:   899 DNLKDFSNLKCLVMKNCENLRYLPSLPKCLEYL 931

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032058001 SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (264 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 36  VLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP 94
            LSD + + E P SI+ L  L  L ++ C+NLE LP  I+ LK L  LNLSG  + + FP
Sbjct: 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-LKSLYRLNLSGCSRLKSFP 721

Query: 95  EKTSSRDELLEIHLEGTAIRGLPASIEL 122
           + +++   L    L+ TAI   P+++ L
Sbjct: 722 DISTNISWLD---LDETAIEEFPSNLRL 746

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 37  LSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE 95
           LSD   + E P SI+ L  L  L +  C NLE LP  I+ L+ L +L+LSG  + R FP+
Sbjct: 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPD 843

Query: 96  KTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVP-ETLGNVESLEVRLSCHKRA 154
            +++  +L   +L  T I  +P  IE        NL  +      N++ + + +S  K  
Sbjct: 844 ISTNISDL---NLSRTGIEEVPWWIEKFS-----NLSFLDMNGCNNLQRVSLNISKLKHL 895

Query: 155 KMQNDFDCVE 164
           +  +  DC  
Sbjct: 896 ETVDFSDCGA 905

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 23  CSRLWEEAD---TLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRTISALKY 78
           CSRL    D    + ++    T I+E P  IE    L  L +NGC NL+ +   IS LK+
Sbjct: 835 CSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894

Query: 79  LSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNAAPNLKNVPETL 138
           L T++ S      E     S  +  +      +    LP+++ + F N   NL       
Sbjct: 895 LETVDFSDCGALTEASWNGSPSEVAMATDNIHSK---LPSTVCINFINCF-NLDQEALLQ 950

Query: 139 GNVESLEVRLSC 150
                 ++ LS 
Sbjct: 951 QQSIFKQLILSG 962

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.52
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.46
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.43
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.43
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.17
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.08
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.02
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.01
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.01
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.75
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
PLN03150	623	hypothetical protein; Provisional	98.66
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.53
PLN03150	623	hypothetical protein; Provisional	98.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.49
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.36
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.36
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.33
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
PRK15386	426	type III secretion protein GogB; Provisional	98.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
PRK15386	426	type III secretion protein GogB; Provisional	98.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.58
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.49
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.99
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.85
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.03
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.54
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.24
KOG4341	483	consensus F-box protein containing LRR [General fu	94.09
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	92.76
smart00370	26	LRR Leucine-rich repeats, outliers.	91.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.79
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.44
KOG1947	482	consensus Leucine rich repeat proteins, some prote	85.12
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.99

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=5.3e-17  Score=114.63  Aligned_cols=142  Identities=18%  Similarity=0.256  Sum_probs=124.1

Q ss_pred             cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      .+.+++.|.+++|.++.+| .++.+.+|++|++.+ ++++++|..++.+++|+.|++.- +++..+|.+++.++.|+.|+
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence            5667888999999999998 999999999999988 78999999999999999999986 67888999999999999999


Q ss_pred             ccCccCCC--CChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceeccCCc
Q 037904          108 LEGTAIRG--LPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKDSD  172 (189)
Q Consensus       108 l~~~~~~~--lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~~~  172 (189)
                      +..|.+.+  +|..|-.++.|+     .+.++.+|..++.+++|+. ...-+.+-++|   +.+..|+.|++.+..
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            99998754  788887777776     7899999999999999999 44446677888   788889999988865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.52  E-value=4.1e-14  Score=126.39  Aligned_cols=142  Identities=19%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             CCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           31 DTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        31 ~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      ++|++|++++|.+. .+| .++++.+|++|++++|.....+|..++++++|++|++++|.....+|..++.+.+|+.|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            33444444444443 234 5555566666666665444455555666666666666655444455555566666666666


Q ss_pred             cCccCC-CCChhchhccCCC-----CCCCC-CccccccCcccccc--ccCCcCccccC---cccccccceeccCCc
Q 037904          109 EGTAIR-GLPASIELLFGNA-----APNLK-NVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSD  172 (189)
Q Consensus       109 ~~~~~~-~lp~~~~~L~~L~-----~~~l~-~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~  172 (189)
                      ++|.+. .+|..++.+++|+     .+.+. .+|.+++++++|+.  +.++.....+|   ..+++|+.|++++|.
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            665554 3455555555554     23332 34555555555555  33333223344   344555555555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.52  E-value=5.2e-14  Score=125.68  Aligned_cols=150  Identities=16%  Similarity=0.119  Sum_probs=98.3

Q ss_pred             CcchhhhcCCCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC
Q 037904           22 NCSRLWEEADTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS   99 (189)
Q Consensus        22 ~~~~~~~~l~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   99 (189)
                      ..+..+..+++|++|++++|.+. .+| .+.++++|++|++++|.....+|..++++++|+.|++++|.....+|..++.
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            34455677888888888888775 456 7788888888888887666677777888888888888876555567777777


Q ss_pred             CCCCcEEEccCccCC-CCChhchhccCCC-----CCCCC-CccccccCcccccc--ccCCcCccccC---ccccccccee
Q 037904          100 RDELLEIHLEGTAIR-GLPASIELLFGNA-----APNLK-NVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIA  167 (189)
Q Consensus       100 l~~L~~l~l~~~~~~-~lp~~~~~L~~L~-----~~~l~-~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~  167 (189)
                      +++|++|++++|.+. .+|..++.+++|+     .+.+. .+|.++..+++|+.  +.+|.....+|   ..+++|+.|+
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  314 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH  314 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence            778888888777765 4566666666665     33332 34555555555555  33333223333   3344455555


Q ss_pred             ccCC
Q 037904          168 KKDS  171 (189)
Q Consensus       168 l~~~  171 (189)
                      ++++
T Consensus       315 l~~n  318 (968)
T PLN00113        315 LFSN  318 (968)
T ss_pred             CCCC
Confidence            5444

>PLN03210 Resistant to P

Probab=99.46  E-value=3.9e-13  Score=121.77  Aligned_cols=148  Identities=22%  Similarity=0.376  Sum_probs=97.2

Q ss_pred             hcCCCCcEEEccCC-CccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           28 EEADTLWEVLSDGT-DIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        28 ~~l~~L~~L~l~~~-~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      ..+++|+.|+++++ .++.+|.+..+++|+.|++++|..+..+|..+.++++|+.|++++|+.+..+|..+ .+++|+.|
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L  709 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL  709 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence            45667777777664 45555655666777777777777677777767777777777777776666666543 34444444


Q ss_pred             ---------------------EccCccCCCCChhc--hhccC----------------------------CC------CC
Q 037904          107 ---------------------HLEGTAIRGLPASI--ELLFG----------------------------NA------AP  129 (189)
Q Consensus       107 ---------------------~l~~~~~~~lp~~~--~~L~~----------------------------L~------~~  129 (189)
                                           +++++.+..+|..+  .+|..                            |+      +.
T Consensus       710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~  789 (1153)
T PLN03210        710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP  789 (1153)
T ss_pred             eCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence                                 44445555555421  11111                            11      33


Q ss_pred             CCCCccccccCcccccc--ccCCcCccccC--cccccccceeccCCcchhh
Q 037904          130 NLKNVPETLGNVESLEV--RLSCHKRAKMQ--NDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       130 ~l~~lp~~~~~l~~L~~--l~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~  176 (189)
                      .+..+|.+++++++|+.  +.+|+.++.+|  ..+++|+.|++++|..+..
T Consensus       790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             CccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence            45567888888888988  88898999888  4578899999999877654

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.43  E-value=9.1e-15  Score=120.92  Aligned_cols=153  Identities=19%  Similarity=0.256  Sum_probs=133.6

Q ss_pred             CcchhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCC
Q 037904           22 NCSRLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSR  100 (189)
Q Consensus        22 ~~~~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l  100 (189)
                      ..|..+..+.+|+.++++.|++..+| .+-++.+|+.|+|++ +.++++....+.+.+|++|+++. +.++.+|+.+..+
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL  290 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKL  290 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhh
Confidence            34555677889999999999999999 888899999999999 67888888888889999999998 6788999999999


Q ss_pred             CCCcEEEccCccC--CCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceecc
Q 037904          101 DELLEIHLEGTAI--RGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKK  169 (189)
Q Consensus       101 ~~L~~l~l~~~~~--~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~  169 (189)
                      +.|+.|.+..|.+  ..+|.+++.|..|.     .|.++-+|++++++..|+. -.+||.+..+|   +.++.|+.||+.
T Consensus       291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR  370 (1255)
T ss_pred             HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence            9999999988875  57999999999888     7888899999999999999 88889999999   778889999998


Q ss_pred             CCcchhh
Q 037904          170 DSDSWKK  176 (189)
Q Consensus       170 ~~~~l~~  176 (189)
                      ....+..
T Consensus       371 eNpnLVM  377 (1255)
T KOG0444|consen  371 ENPNLVM  377 (1255)
T ss_pred             CCcCccC
Confidence            8887654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.43  E-value=2.9e-15  Score=105.92  Aligned_cols=138  Identities=19%  Similarity=0.185  Sum_probs=118.8

Q ss_pred             chhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCC-ccCccccCCCC
Q 037904           24 SRLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKF-REFPEKTSSRD  101 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~-~~lp~~~~~l~  101 (189)
                      +.-+..+.+|+.|++.+|+++++| +++.+++|+.|++.- +.+..+|.+|+.++.|+.||+++++.- ..+|..+-.+.
T Consensus        49 ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~  127 (264)
T KOG0617|consen   49 PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT  127 (264)
T ss_pred             CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence            333567889999999999999999 999999999999987 678999999999999999999985433 45888888888


Q ss_pred             CCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc--ccCCcCccccCcccccc
Q 037904          102 ELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV--RLSCHKRAKMQNDFDCV  163 (189)
Q Consensus       102 ~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~--l~~~~~l~~~~~~l~~L  163 (189)
                      .|+.|.++.|.++-+|+.++.|++|+     .+.+-++|.+++.++.|+.  +.+ +.++.+|..+.+|
T Consensus       128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l  195 (264)
T KOG0617|consen  128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANL  195 (264)
T ss_pred             HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhh
Confidence            89999999999999999999999988     7888899999999999998  666 7788888444443

>PLN03210 Resistant to P

Probab=99.43  E-value=6.8e-13  Score=120.24  Aligned_cols=123  Identities=18%  Similarity=0.325  Sum_probs=102.2

Q ss_pred             CCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCcc-CCCCChhchhccCCC--CC
Q 037904           53 FGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTA-IRGLPASIELLFGNA--AP  129 (189)
Q Consensus        53 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~-~~~lp~~~~~L~~L~--~~  129 (189)
                      .+|+.|++++|..+..+|.+++++++|+.|++++|+.+..+|..+ .+++|+.|++++|. +..+|....+++.|.  .+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence            367788888888888899999999999999999998898898776 68889999999864 455666555555444  78


Q ss_pred             CCCCccccccCcccccc--ccCCcCccccC---cccccccceeccCCcchhh
Q 037904          130 NLKNVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       130 ~l~~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~  176 (189)
                      .++.+|.++..+++|+.  +.+|++++.+|   ..+++|+.+++++|.+++.
T Consensus       857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            89999999999999998  88999999998   6788899999999988864

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.28  E-value=3.1e-13  Score=112.02  Aligned_cols=135  Identities=22%  Similarity=0.301  Sum_probs=98.2

Q ss_pred             CC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChhchhcc
Q 037904           46 PL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLF  124 (189)
Q Consensus        46 ~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~~~L~  124 (189)
                      +| ++..+.+|..++++. +.+..+|+.+.++.+|+.|++++ +.++++-...+.-.+|.+|++++|++..+|..++.|+
T Consensus       214 ~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT  291 (1255)
T ss_pred             CCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence            45 666667777777776 56777777777777777777777 5666665554444567777777788888888777777


Q ss_pred             CCC-----C--CCCCCccccccCcccccc-ccCCcCccccC---cccccccceeccCCcchhhcccccccc
Q 037904          125 GNA-----A--PNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKKNVDEGIKL  184 (189)
Q Consensus       125 ~L~-----~--~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~~~~~~~~~  184 (189)
                      .|+     .  -.++.+|++++.+..|+. .+.+|+++-+|   ..+..|+.|.++... +-. +|++|-+
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiT-LPeaIHl  360 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LIT-LPEAIHL  360 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eee-chhhhhh
Confidence            776     2  356789999999999999 88889999999   567789999887655 433 6666544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=4.4e-13  Score=109.57  Aligned_cols=148  Identities=14%  Similarity=0.177  Sum_probs=125.1

Q ss_pred             CCcchhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC
Q 037904           21 GNCSRLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS   99 (189)
Q Consensus        21 ~~~~~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   99 (189)
                      ...++.+.++..|++++++.|++..+| .+..|+ |++|-+++ ++++.+|+.++....|..|+.+. +.+..+|..++.
T Consensus       111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~  187 (722)
T KOG0532|consen  111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGY  187 (722)
T ss_pred             eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh-hhhhhchHHhhh
Confidence            334555677888899999999999888 776665 88888887 67899999999888999999988 467889999999


Q ss_pred             CCCCcEEEccCccCCCCChhchhccCCC----CCCCCCccccccCcccccc-ccCCcCccccC------cccccccceec
Q 037904          100 RDELLEIHLEGTAIRGLPASIELLFGNA----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ------NDFDCVEQIAK  168 (189)
Q Consensus       100 l~~L~~l~l~~~~~~~lp~~~~~L~~L~----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~------~~l~~L~~L~l  168 (189)
                      +.+|+.+++..|.+..+|+.+..|+-.+    ||++..+|-.|.+|+.|+. ...||-+++-|      |...-.++|++
T Consensus       188 l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~  267 (722)
T KOG0532|consen  188 LTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST  267 (722)
T ss_pred             HHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence            9999999999999999999888776444    9999999999999999999 88889999887      55666788888


Q ss_pred             cCC
Q 037904          169 KDS  171 (189)
Q Consensus       169 ~~~  171 (189)
                      ..|
T Consensus       268 qA~  270 (722)
T KOG0532|consen  268 QAC  270 (722)
T ss_pred             hhc
Confidence            888

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.17  E-value=2.2e-12  Score=101.90  Aligned_cols=139  Identities=19%  Similarity=0.209  Sum_probs=117.2

Q ss_pred             CcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCc
Q 037904           33 LWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGT  111 (189)
Q Consensus        33 L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~  111 (189)
                      +...+++.|++.++| .+..++.+++.-+..++.+.-+|..++.+++|..|++++ +.+-++|...+.+-.||.+++++|
T Consensus       390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence            667788888888888 777777766654444477777888889999999999998 678899999999889999999999


Q ss_pred             cCCCCChhchhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC---cccccccceeccCCc
Q 037904          112 AIRGLPASIELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKDSD  172 (189)
Q Consensus       112 ~~~~lp~~~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~~~  172 (189)
                      .+..+|+.+..+..++     .+.+..++.+ +.+|.+|++ ..+.|.++.+|   +++.+|++|++.|..
T Consensus       469 rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  469 RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence            9999999776666665     6889999875 999999999 77889999999   999999999999975

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.12  E-value=1.1e-12  Score=103.63  Aligned_cols=142  Identities=18%  Similarity=0.246  Sum_probs=104.5

Q ss_pred             hhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904           27 WEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLE  105 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  105 (189)
                      +.++..+..+++++|++.++| +++.+.+++.++.++ +.+..+|+.++.+.++..++.+. +.+.++|+.++.+..+..
T Consensus        64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLED  141 (565)
T ss_pred             hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhh
Confidence            446778888999999999998 888888999999988 56888888888888888888888 567788888888888888


Q ss_pred             EEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceeccC
Q 037904          106 IHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKD  170 (189)
Q Consensus       106 l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~  170 (189)
                      ++..+|++..+|+++..+..|.     .+.+..+|+..-+|+.|+. ....+-++.+|   +.+.+|..|++..
T Consensus       142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence            8888888888888766665443     5666666665444666665 44445555666   4444555444433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.08  E-value=5.4e-12  Score=103.29  Aligned_cols=140  Identities=22%  Similarity=0.310  Sum_probs=117.9

Q ss_pred             cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      .+..|..+.++.|.+..+| .+.++..|+.++++. +++..+|..+..|+ |+.|.+++ ++++.+|+.++....|..++
T Consensus        96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen   96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLD  172 (722)
T ss_pred             HHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhh
Confidence            3445666777888888888 888889999999998 67889998888776 88888887 68899999999888999999


Q ss_pred             ccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceeccCCc
Q 037904          108 LEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKDSD  172 (189)
Q Consensus       108 l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~~~  172 (189)
                      .+.|.+..+|..+++|..|+     -|++..+|.+++.++ |.. ...||++..+|   ..|+.|++|.+++..
T Consensus       173 ~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  173 VSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             hhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence            99999999999998888887     688899999888777 555 88999999999   777888888887754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.02  E-value=2.9e-11  Score=99.53  Aligned_cols=144  Identities=17%  Similarity=0.137  Sum_probs=81.5

Q ss_pred             hcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCc
Q 037904           28 EEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELL  104 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~  104 (189)
                      -.+.++++|++..|++..+.  .+-+++.|+.|++++|..-..-+.+++.+++|++|++++ +.+.++++ ++..++.|+
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhh
Confidence            34556666666666666664  556666677777776443333345666666777777776 45555553 455556666


Q ss_pred             EEEccCccCCCCChh-chhccCCC-----CCCCC----CccccccCcccccc-ccCCcCccccC----cccccccceecc
Q 037904          105 EIHLEGTAIRGLPAS-IELLFGNA-----APNLK----NVPETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKK  169 (189)
Q Consensus       105 ~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~----~lp~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~  169 (189)
                      .|+|++|.++.+.++ |..+++|+     .|.+.    .--..+.+|++|+. ...-|+++.+|    ..+..|++|++.
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence            666666666555432 33333333     22221    11123556666766 44446677777    556667777766


Q ss_pred             CCc
Q 037904          170 DSD  172 (189)
Q Consensus       170 ~~~  172 (189)
                      +..
T Consensus       425 ~Na  427 (873)
T KOG4194|consen  425 DNA  427 (873)
T ss_pred             CCc
Confidence            543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.01  E-value=1.5e-09  Score=94.24  Aligned_cols=39  Identities=33%  Similarity=0.435  Sum_probs=22.2

Q ss_pred             CCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChh
Q 037904           78 YLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPAS  119 (189)
Q Consensus        78 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~  119 (189)
                      +|+.|++++ +.+..+|..+.  .+|+.|++++|.++.+|..
T Consensus       263 ~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~  301 (754)
T PRK15370        263 ALQSLDLFH-NKISCLPENLP--EELRYLSVYDNSIRTLPAH  301 (754)
T ss_pred             CCCEEECcC-CccCccccccC--CCCcEEECCCCccccCccc
Confidence            456666654 34555555443  3566666666666655543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.01  E-value=7.3e-10  Score=96.07  Aligned_cols=131  Identities=17%  Similarity=0.232  Sum_probs=78.0

Q ss_pred             CCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904           32 TLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG  110 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~  110 (189)
                      +|+.|++++|+++.+| .+.  .+|+.|++++ +.+..+|..+.  .+|+.|++++| .+..+|..+.  .+|+.|++++
T Consensus       242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        242 TIQEMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS  313 (754)
T ss_pred             cccEEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcC
Confidence            3455555555555555 332  3678888876 46677777553  58999999985 6777776543  3567777777


Q ss_pred             ccCCCCChhc-hhccCCC--CCCCCCccccccCcccccc-ccCCcCccccC-cccccccceeccCCc
Q 037904          111 TAIRGLPASI-ELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQ-NDFDCVEQIAKKDSD  172 (189)
Q Consensus       111 ~~~~~lp~~~-~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-~~l~~L~~L~l~~~~  172 (189)
                      |.+..+|..+ ..|+.|.  .+.++.+|..+.  ++|+. ....+.+..+| ..+++|+.|++++|.
T Consensus       314 N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~  378 (754)
T PRK15370        314 NSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPTITTLDVSRNA  378 (754)
T ss_pred             CccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhcCCcCEEECCCCc
Confidence            7777666533 3344443  556666665443  45555 33334455555 334556666666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.94  E-value=5.7e-10  Score=92.14  Aligned_cols=139  Identities=19%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccC-ccccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREF-PEKTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~l  106 (189)
                      .++++|++++|.|+.+.  .|.++.+|.+|.|++ +.++.+|. .|+++++|+.|++.. +.++.+ -..+..+++|+.+
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhh
Confidence            34555555555555553  455555555555555 34445543 344555555555555 233322 1233444444444


Q ss_pred             EccCccCCCCChh----chhccCCC--CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceeccCC
Q 037904          107 HLEGTAIRGLPAS----IELLFGNA--APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDS  171 (189)
Q Consensus       107 ~l~~~~~~~lp~~----~~~L~~L~--~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~  171 (189)
                      .+.+|.+..+-.+    +.++..|.  .|++..+.+ ++.+++.|+. ....|.++.+.    ...++|+.|+++..
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            4444443333221    12222111  344444444 3445555555 44445555544    34455555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.89  E-value=1.9e-10  Score=98.86  Aligned_cols=147  Identities=20%  Similarity=0.252  Sum_probs=108.0

Q ss_pred             chhhhcCCCCcEEEccCCCccCCC--CccC-------------------------CCCCcEEeccCCcCCccCcccccCC
Q 037904           24 SRLWEEADTLWEVLSDGTDIKEPL--SIEL-------------------------LFGLVQLTLNGCKNLEHLPRTISAL   76 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~~~p--~~~~-------------------------l~~L~~L~l~~~~~l~~lp~~~~~l   76 (189)
                      +.....++.|+.|++..|++..+|  .+.-                         ...|+.|.+.+|..-...-+.+.+.
T Consensus       303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~  382 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF  382 (1081)
T ss_pred             CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence            334455677888888888777666  2211                         1234445555533222334446778


Q ss_pred             CCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccC
Q 037904           77 KYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLS  149 (189)
Q Consensus        77 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~  149 (189)
                      .+|+.|++++ +.+..+|+ .+.++..|+.|++++|.++.+|..+..+..|+     .|.+..+| .+..++.|+. ..+
T Consensus       383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             cceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc
Confidence            8899999999 57888886 46788899999999999999998877777666     67888999 6889999999 888


Q ss_pred             CcCccccC---ccc-ccccceeccCCc
Q 037904          150 CHKRAKMQ---NDF-DCVEQIAKKDSD  172 (189)
Q Consensus       150 ~~~l~~~~---~~l-~~L~~L~l~~~~  172 (189)
                      ||.+..+.   ... ++|++||++|..
T Consensus       461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  461 CNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cchhhhhhhhhhCCCcccceeeccCCc
Confidence            99998765   444 799999999876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=2.3e-09  Score=77.33  Aligned_cols=84  Identities=25%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             CCCCcEEEccCCCccCCCCcc-CCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcccc-CCCCCCcEEE
Q 037904           30 ADTLWEVLSDGTDIKEPLSIE-LLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKT-SSRDELLEIH  107 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p~~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~l~  107 (189)
                      ...+++|++++|.|+.+..++ .+.+|+.|++++ +.++.++. +..++.|+.|++++ +.++.+++.+ ..+++|+.|+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~-N~I~~l~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSN-NQITKLEG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TT-S--S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCC-CCCccccC-ccChhhhhhcccCC-CCCCccccchHHhCCcCCEEE
Confidence            346789999999888876444 578899999998 56777754 77889999999998 5777776554 3578899999


Q ss_pred             ccCccCCCC
Q 037904          108 LEGTAIRGL  116 (189)
Q Consensus       108 l~~~~~~~l  116 (189)
                      +++|.+.++
T Consensus        95 L~~N~I~~l  103 (175)
T PF14580_consen   95 LSNNKISDL  103 (175)
T ss_dssp             -TTS---SC
T ss_pred             CcCCcCCCh
Confidence            999988764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.84  E-value=1.4e-08  Score=88.15  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             CCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcc
Q 037904           32 TLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPR   71 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~   71 (189)
                      +|+.|++.+|+++.+|.  ..++|+.|++++| .++.+|.
T Consensus       223 ~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N-~LtsLP~  259 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV  259 (788)
T ss_pred             CCCEEEccCCcCCCCCC--CCCCCcEEEecCC-ccCcccC
Confidence            45666666666666651  1345666666663 4555553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.79  E-value=2.4e-08  Score=86.75  Aligned_cols=78  Identities=23%  Similarity=0.305  Sum_probs=46.8

Q ss_pred             CCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           30 ADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      .++|++|++++|+++.+| ..   .+|+.|++.+| .+..+|...   .+|+.|++++| .+..+|..   +++|+.|++
T Consensus       241 p~~Lk~LdLs~N~LtsLP~lp---~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdL  309 (788)
T PRK15387        241 PPELRTLEVSGNQLTSLPVLP---PGLLELSIFSN-PLTHLPALP---SGLCKLWIFGN-QLTSLPVL---PPGLQELSV  309 (788)
T ss_pred             CCCCcEEEecCCccCcccCcc---cccceeeccCC-chhhhhhch---hhcCEEECcCC-cccccccc---ccccceeEC
Confidence            578999999999999988 33   46777777774 455555422   34555555552 44445432   234555555


Q ss_pred             cCccCCCCCh
Q 037904          109 EGTAIRGLPA  118 (189)
Q Consensus       109 ~~~~~~~lp~  118 (189)
                      ++|.+..+|.
T Consensus       310 S~N~L~~Lp~  319 (788)
T PRK15387        310 SDNQLASLPA  319 (788)
T ss_pred             CCCccccCCC
Confidence            5555554443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.77  E-value=1e-09  Score=94.41  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=61.2

Q ss_pred             CCCCCCcEEEccCccCCCCChh-chhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceec
Q 037904           98 SSRDELLEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAK  168 (189)
Q Consensus        98 ~~l~~L~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l  168 (189)
                      -+..+|+.|+|++|.+..+|.+ +.+|..|+     +|.++.+|..+..+..|++ .++.|.+..+|  ..++.|+.+|+
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL  459 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec
Confidence            3366788899999999888864 34444443     8999999999999999999 99999999999  77889999999


Q ss_pred             cCCc
Q 037904          169 KDSD  172 (189)
Q Consensus       169 ~~~~  172 (189)
                      +...
T Consensus       460 S~N~  463 (1081)
T KOG0618|consen  460 SCNN  463 (1081)
T ss_pred             ccch
Confidence            8654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.75  E-value=6e-09  Score=84.58  Aligned_cols=140  Identities=27%  Similarity=0.409  Sum_probs=83.5

Q ss_pred             CCCCcEEEccCCCccCCC-CccCCC-CCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           30 ADTLWEVLSDGTDIKEPL-SIELLF-GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p-~~~~l~-~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      .+.+..|++.++.++++| ....+. +|+.|++++ +.+..+|..+..+++|+.|++++ +.+.++|...+....|+.++
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhhee
Confidence            355667777777777766 444453 677777766 45666665566677777777776 35666665554556666677


Q ss_pred             ccCccCCCCChhchh---ccCCC-------------------------CCCCCCccccccCcccccc-ccCCcCccccC-
Q 037904          108 LEGTAIRGLPASIEL---LFGNA-------------------------APNLKNVPETLGNVESLEV-RLSCHKRAKMQ-  157 (189)
Q Consensus       108 l~~~~~~~lp~~~~~---L~~L~-------------------------~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-  157 (189)
                      +++|.+..+|...+.   +..|.                         .+.+..++..++.++.++. ...++.+..++ 
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence            777666666654222   22222                         2333333445555666666 55556666666 


Q ss_pred             -cccccccceeccCC
Q 037904          158 -NDFDCVEQIAKKDS  171 (189)
Q Consensus       158 -~~l~~L~~L~l~~~  171 (189)
                       +.+.+++.|++++.
T Consensus       273 ~~~~~~l~~L~~s~n  287 (394)
T COG4886         273 LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccCccCEEeccCc
Confidence             55667777777664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.71  E-value=2.2e-08  Score=72.26  Aligned_cols=88  Identities=23%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             cCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccc-cCCCCCCEEeccCCCCCccCc--cccCCCCCCcE
Q 037904           29 EADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTI-SALKYLSTLNLSGLLKFREFP--EKTSSRDELLE  105 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~  105 (189)
                      .+.+|+.|++++|.++.++++..++.|++|++++ +.++.+++.+ ..+++|+.|++++ +++..+.  ..+..+++|+.
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--E
T ss_pred             hhcCCCEEECCCCCCccccCccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcce
Confidence            4678999999999999998888899999999999 5678887655 4699999999998 5666554  35678899999


Q ss_pred             EEccCccCCCCCh
Q 037904          106 IHLEGTAIRGLPA  118 (189)
Q Consensus       106 l~l~~~~~~~lp~  118 (189)
                      |++.+|++.+-+.
T Consensus       118 L~L~~NPv~~~~~  130 (175)
T PF14580_consen  118 LSLEGNPVCEKKN  130 (175)
T ss_dssp             EE-TT-GGGGSTT
T ss_pred             eeccCCcccchhh
Confidence            9999999876443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=1.1e-08  Score=90.30  Aligned_cols=80  Identities=28%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             CCcEEEccCCC--ccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           32 TLWEVLSDGTD--IKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        32 ~L~~L~l~~~~--l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      .|+.|.+.+|.  +..++  .|..++.|++||+++|..+..+|..++.+.+|++|++++ ..+..+|.+++.+..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence            46666666653  44444  355666666666666666666666666666666666666 45666666666666666666


Q ss_pred             ccCcc
Q 037904          108 LEGTA  112 (189)
Q Consensus       108 l~~~~  112 (189)
                      +..+.
T Consensus       625 l~~~~  629 (889)
T KOG4658|consen  625 LEVTG  629 (889)
T ss_pred             ccccc
Confidence            66544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=2.1e-08  Score=59.74  Aligned_cols=56  Identities=29%  Similarity=0.265  Sum_probs=41.6

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCC
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGL   87 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~   87 (189)
                      ++|++|++++|+++.+|  .+.++++|++|++++| .++.++ ..|.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            46778888888888886  6778888888888874 455555 35677888888887775

...

>PLN03150 hypothetical protein; Provisional

Probab=98.66  E-value=5.6e-08  Score=83.37  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=78.3

Q ss_pred             CcEEEccCCCccC-CC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904           33 LWEVLSDGTDIKE-PL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG  110 (189)
Q Consensus        33 L~~L~l~~~~l~~-~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~  110 (189)
                      ++.|++++|.+.. +| .+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|+.++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            7789999998875 47 899999999999999776678998899999999999999776678999999999999999999


Q ss_pred             ccCC-CCChhchh
Q 037904          111 TAIR-GLPASIEL  122 (189)
Q Consensus       111 ~~~~-~lp~~~~~  122 (189)
                      |.+. .+|..++.
T Consensus       500 N~l~g~iP~~l~~  512 (623)
T PLN03150        500 NSLSGRVPAALGG  512 (623)
T ss_pred             CcccccCChHHhh
Confidence            9886 57776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.60  E-value=4.6e-08  Score=79.43  Aligned_cols=110  Identities=21%  Similarity=0.314  Sum_probs=85.0

Q ss_pred             EEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCC-CCCEEeccCCCCCccCccccCCCCCCcEEEccCcc
Q 037904           35 EVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALK-YLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTA  112 (189)
Q Consensus        35 ~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~  112 (189)
                      .+....+.+..-. .+..+..++.|++.+ +.+..+|....... +|+.|++++ +.+..+|..++.++.|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch
Confidence            4777777764444 666678899999988 67889998777775 999999999 6788888888999999999999999


Q ss_pred             CCCCChhchhccCCC-----CCCCCCccccccCcccccc
Q 037904          113 IRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV  146 (189)
Q Consensus       113 ~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~  146 (189)
                      +.++|...+.+..|.     .+.+..+|........|+.
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~  213 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEE  213 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhh
Confidence            999988544444443     7788888875444444555

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.53  E-value=4.1e-09  Score=83.35  Aligned_cols=78  Identities=22%  Similarity=0.206  Sum_probs=55.2

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEc
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHL  108 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l  108 (189)
                      ..++++++.|+|+.+|  .|+.+++|+.|+|++|+....-|.+|.++.++..|-+.++++++.+|+ .++.+.+++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            4677888888888887  788888888888888554444566788888888877777777777774 3445444444433


Q ss_pred             c
Q 037904          109 E  109 (189)
Q Consensus       109 ~  109 (189)
                      .
T Consensus       148 N  148 (498)
T KOG4237|consen  148 N  148 (498)
T ss_pred             C
Confidence            3

>PLN03150 hypothetical protein; Provisional

Probab=98.50  E-value=3.8e-07  Score=78.31  Aligned_cols=91  Identities=19%  Similarity=0.154  Sum_probs=76.9

Q ss_pred             CcchhhhcCCCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC
Q 037904           22 NCSRLWEEADTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS   99 (189)
Q Consensus        22 ~~~~~~~~l~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   99 (189)
                      ..+..+..+++|+.|++++|++. .+| .+..+.+|+.|++++|+....+|..++++++|+.|++++|.....+|..++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            34455778899999999999998 568 8999999999999998777789999999999999999998777789988765


Q ss_pred             C-CCCcEEEccCcc
Q 037904          100 R-DELLEIHLEGTA  112 (189)
Q Consensus       100 l-~~L~~l~l~~~~  112 (189)
                      . .++..+++.+|.
T Consensus       513 ~~~~~~~l~~~~N~  526 (623)
T PLN03150        513 RLLHRASFNFTDNA  526 (623)
T ss_pred             ccccCceEEecCCc
Confidence            3 356778887764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.49  E-value=1.1e-08  Score=81.02  Aligned_cols=129  Identities=19%  Similarity=0.245  Sum_probs=77.6

Q ss_pred             EccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC-ccC
Q 037904           37 LSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG-TAI  113 (189)
Q Consensus        37 ~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~-~~~  113 (189)
                      +-++-+++++| .+.  ...+.++|.. +.++.+|+ .|+.+++|+.||+++|+....-|+.++.+.++..|.+.+ |.|
T Consensus        52 dCr~~GL~eVP~~LP--~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLP--PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             EccCCCcccCcccCC--CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            33445677777 333  2455677777 56777775 567888888888888543334467777777777776666 778


Q ss_pred             CCCChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceec
Q 037904          114 RGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAK  168 (189)
Q Consensus       114 ~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l  168 (189)
                      +++|.+ |+.|..|+     .+.+..++. .+..++++.. ...-+.++.++    ..+..++.+++
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl  195 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL  195 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence            887764 56665554     445555544 4555665555 22224555555    33444455444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.38  E-value=5.2e-08  Score=75.07  Aligned_cols=124  Identities=23%  Similarity=0.246  Sum_probs=74.9

Q ss_pred             CCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904           31 DTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE  109 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~  109 (189)
                      ..|+++++++|.|+.+. ++.-+++++.|++++| .+..+.. +..+++|+.||+++ +.+..+...-..+-++++|.++
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehh
Confidence            45777888888888877 7777788888888884 4555544 66778888888887 4455444333445566777787


Q ss_pred             CccCCCCCh--hchhccCCC--CCCCCCccc--cccCcccccc-ccCCcCccccC
Q 037904          110 GTAIRGLPA--SIELLFGNA--APNLKNVPE--TLGNVESLEV-RLSCHKRAKMQ  157 (189)
Q Consensus       110 ~~~~~~lp~--~~~~L~~L~--~~~l~~lp~--~~~~l~~L~~-l~~~~~l~~~~  157 (189)
                      .|.++.+..  .+..|.+|.  .|+++.+-.  ++++++-|+. ..-.|.+..++
T Consensus       361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            777765432  122333333  455554432  4566666665 22224444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.36  E-value=1.5e-07  Score=73.88  Aligned_cols=146  Identities=18%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             hhhcCCCCcEEEccCCCccCC-C-CccCCC---CCcEEeccCCcCCc----cCcccccCC-CCCCEEeccCCCCCc----
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-L-SIELLF---GLVQLTLNGCKNLE----HLPRTISAL-KYLSTLNLSGLLKFR----   91 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~---~L~~L~l~~~~~l~----~lp~~~~~l-~~L~~L~l~~~~~~~----   91 (189)
                      .+..+++|+.|++++|.+... + .+..+.   +|+.|++++|+...    .+...+..+ ++|+.|++++|....    
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            344566777777777766532 2 333333   37777777754321    122234455 677777777754331    


Q ss_pred             cCccccCCCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCC-----CccccccCcccccc--ccCCcCcc
Q 037904           92 EFPEKTSSRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLK-----NVPETLGNVESLEV--RLSCHKRA  154 (189)
Q Consensus        92 ~lp~~~~~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~-----~lp~~~~~l~~L~~--l~~~~~l~  154 (189)
                      .++..+..+.+|+.|++++|.+.+     ++..+..++.|+     .+.+.     .+...+..+++|+.  +.+| .+.
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~  234 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLT  234 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCc
Confidence            233445556677777777776652     223333222333     33443     22333455666776  4443 344


Q ss_pred             ccC-----cc----cccccceeccCCc
Q 037904          155 KMQ-----ND----FDCVEQIAKKDSD  172 (189)
Q Consensus       155 ~~~-----~~----l~~L~~L~l~~~~  172 (189)
                      ...     ..    .+.|+.|++++|.
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCC
Confidence            321     22    3678888887774

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.36  E-value=6.4e-08  Score=74.57  Aligned_cols=115  Identities=18%  Similarity=0.102  Sum_probs=89.7

Q ss_pred             CCCCcchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccC
Q 037904           19 EPGNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTS   98 (189)
Q Consensus        19 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~   98 (189)
                      .+....+.+.-.|.++.|+++.|++..+..++.+.+|+.|++++ +.+..+..+-..+.+.+.|.+.+ +.+..+. +++
T Consensus       295 ~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS-GL~  371 (490)
T KOG1259|consen  295 LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ-NKIETLS-GLR  371 (490)
T ss_pred             chhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh-hhHhhhh-hhH
Confidence            34444556667899999999999999887788899999999999 56777766666788899999988 4565553 677


Q ss_pred             CCCCCcEEEccCccCCCC--ChhchhccCCC-----CCCCCCccc
Q 037904           99 SRDELLEIHLEGTAIRGL--PASIELLFGNA-----APNLKNVPE  136 (189)
Q Consensus        99 ~l~~L~~l~l~~~~~~~l--p~~~~~L~~L~-----~~~l~~lp~  136 (189)
                      .+-+|..|++++|+|+++  ..++++|+.|.     .|.+..+|+
T Consensus       372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            788899999999999876  34677777766     666666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.33  E-value=6.8e-07  Score=53.10  Aligned_cols=59  Identities=27%  Similarity=0.376  Sum_probs=49.4

Q ss_pred             CCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEccCccC
Q 037904           53 FGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLEGTAI  113 (189)
Q Consensus        53 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~  113 (189)
                      ++|++|++++| .+..+|. .+.++++|++|++++ +.+..++ ..+..+++|+++++++|.+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999995 6788875 678999999999998 4666666 5789999999999999864

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=2.7e-07  Score=81.56  Aligned_cols=87  Identities=24%  Similarity=0.267  Sum_probs=74.6

Q ss_pred             hhhhcCCCCcEEEccCC-CccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904           25 RLWEEADTLWEVLSDGT-DIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDE  102 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~-~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~  102 (189)
                      ++|..++.|+.|++++| .+.++| +++.+.+|++|++++ ..+..+|.++.++..|.+|++..+.....+|.....+++
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence            34777999999999987 678889 999999999999998 678899999999999999999987777777777777999


Q ss_pred             CcEEEccCcc
Q 037904          103 LLEIHLEGTA  112 (189)
Q Consensus       103 L~~l~l~~~~  112 (189)
                      |++|.+....
T Consensus       644 Lr~L~l~~s~  653 (889)
T KOG4658|consen  644 LRVLRLPRSA  653 (889)
T ss_pred             ccEEEeeccc
Confidence            9999887754

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.28  E-value=2.2e-06  Score=69.40  Aligned_cols=131  Identities=21%  Similarity=0.315  Sum_probs=84.3

Q ss_pred             hcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           28 EEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      ..+.+++.|++++|.++.+|.+  -.+|+.|.+++|..++.+|..+  ..+|+.|++++|..+..+|..      |+.|+
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence            3468899999999999988832  2369999999999998888755  358999999999888878764      56666


Q ss_pred             ccCcc---CCCCChhchhccCCCCC--CCCCccccccCcccccc--ccCCcCccccC-cccccccceeccCC
Q 037904          108 LEGTA---IRGLPASIELLFGNAAP--NLKNVPETLGNVESLEV--RLSCHKRAKMQ-NDFDCVEQIAKKDS  171 (189)
Q Consensus       108 l~~~~---~~~lp~~~~~L~~L~~~--~l~~lp~~~~~l~~L~~--l~~~~~l~~~~-~~l~~L~~L~l~~~  171 (189)
                      +..+.   +..+|.++..|.--.++  ....+|..+  .++|+.  +.+|..+ .+| +.+.+|+.|+++.+
T Consensus       119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLPESLQSITLHIE  187 (426)
T ss_pred             eCCCCCcccccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccccccCcEEEeccc
Confidence            76654   45677766554310011  111111100  134555  5555544 344 44556777777653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.24  E-value=3.5e-07  Score=71.83  Aligned_cols=14  Identities=14%  Similarity=0.230  Sum_probs=6.7

Q ss_pred             CCCCcEEEccCccC
Q 037904          100 RDELLEIHLEGTAI  113 (189)
Q Consensus       100 l~~L~~l~l~~~~~  113 (189)
                      .++|+.|++++|.+
T Consensus       192 ~~~L~~L~L~~n~i  205 (319)
T cd00116         192 NCNLEVLDLNNNGL  205 (319)
T ss_pred             CCCCCEEeccCCcc
Confidence            34455555554444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=3.5e-06  Score=46.59  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=22.5

Q ss_pred             CCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC
Q 037904           32 TLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL   69 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l   69 (189)
                      +|++|++++|+++++| .+++|++|++|++++| .++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            5667777777777666 4666777777777664 34443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=6.9e-06  Score=45.41  Aligned_cols=32  Identities=41%  Similarity=0.589  Sum_probs=14.5

Q ss_pred             CCcEEeccCCcCCccCcccccCCCCCCEEeccC
Q 037904           54 GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSG   86 (189)
Q Consensus        54 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~   86 (189)
                      +|++|++++ +.++.+|+.++++++|+.|++++
T Consensus         2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccC-CCCcccCchHhCCCCCCEEEecC
Confidence            345555554 23444444444555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.02  E-value=3e-05  Score=62.92  Aligned_cols=58  Identities=24%  Similarity=0.427  Sum_probs=40.5

Q ss_pred             CCcEEEccCC-CccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccC--CCCCccCcccc
Q 037904           32 TLWEVLSDGT-DIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSG--LLKFREFPEKT   97 (189)
Q Consensus        32 ~L~~L~l~~~-~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~--~~~~~~lp~~~   97 (189)
                      +|++|.+.+| +++.+| .+.  .+|+.|++++|..+..+|.+      |+.|++..  |..+..+|.++
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssL  134 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGL  134 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchH
Confidence            5999999885 677777 453  58999999998888888874      45555543  33355666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=3.7e-06  Score=67.66  Aligned_cols=38  Identities=13%  Similarity=-0.046  Sum_probs=21.9

Q ss_pred             hhhcCCCCcEEEccCCCccCC-C---CccCCCCCcEEeccCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-L---SIELLFGLVQLTLNGC   63 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-p---~~~~l~~L~~L~l~~~   63 (189)
                      ....+++++.|++++|-+... |   -...+++|+.|+++.|
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N  182 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN  182 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence            445566677777777644433 2   2345566666666664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.63  E-value=5.3e-06  Score=57.14  Aligned_cols=94  Identities=16%  Similarity=0.242  Sum_probs=53.6

Q ss_pred             CCcEEEccCCCccCCC----CccCCCCCcEEeccCCcCCccCcccccC-CCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           32 TLWEVLSDGTDIKEPL----SIELLFGLVQLTLNGCKNLEHLPRTISA-LKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p----~~~~l~~L~~L~l~~~~~l~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      .+..++++.|.+..++    .+....+|...++++ +.++..|+.+.. .+.+.++++.+ +.+.++|..+..++.|+.+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence            3455566666544332    344455566666666 455666655542 33566666666 4566666666666666666


Q ss_pred             EccCccCCCCChhchhccCCC
Q 037904          107 HLEGTAIRGLPASIELLFGNA  127 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~  127 (189)
                      +++.|.+...|.-+..|.+|.
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~  126 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLD  126 (177)
T ss_pred             ccccCccccchHHHHHHHhHH
Confidence            666666666555444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.60  E-value=5.4e-06  Score=57.08  Aligned_cols=89  Identities=15%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             cCCCCcEEEccCCCccCCC-Ccc-CCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           29 EADTLWEVLSDGTDIKEPL-SIE-LLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p-~~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      ....|...++++|.++++| .+. ..+.+++|++++ +.+.++|.++..++.|+.+++++ +.+...|..+-.+.++..|
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHh
Confidence            3445667799999999998 544 445789999998 78999999999999999999999 4566777766667788888


Q ss_pred             EccCccCCCCChh
Q 037904          107 HLEGTAIRGLPAS  119 (189)
Q Consensus       107 ~l~~~~~~~lp~~  119 (189)
                      +...+...++|-.
T Consensus       129 ds~~na~~eid~d  141 (177)
T KOG4579|consen  129 DSPENARAEIDVD  141 (177)
T ss_pred             cCCCCccccCcHH
Confidence            8888888777654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.58  E-value=2.7e-05  Score=63.87  Aligned_cols=88  Identities=22%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             hhcCCCCcEEEccCCCccCCCC-ccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLS-IELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLE  105 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  105 (189)
                      +..+.++..+++.+|.++.+.. +..+.+|++|++++ +.++.+.. +..++.|+.|++.+ +.+..+. .+..+..|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG-NLISDIS-GLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhheecc-Ccchhcc-CCccchhhhc
Confidence            4566788888888888888874 78888899999988 56666654 56677788888888 4555554 4455778888


Q ss_pred             EEccCccCCCCCh
Q 037904          106 IHLEGTAIRGLPA  118 (189)
Q Consensus       106 l~l~~~~~~~lp~  118 (189)
                      +++++|.+..+..
T Consensus       167 l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  167 LDLSYNRIVDIEN  179 (414)
T ss_pred             ccCCcchhhhhhh
Confidence            8888888876654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=4.4e-05  Score=61.63  Aligned_cols=143  Identities=16%  Similarity=0.156  Sum_probs=79.2

Q ss_pred             hhcCCCCcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDE  102 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~  102 (189)
                      ...+++|+.|+++.|.+.-..   .-..+.+|+.|.++.|.....- .-....+++|+.|++..|..+.........+..
T Consensus       168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence            456778888888887665432   1234567777888777544322 222346777888888775433222222334456


Q ss_pred             CcEEEccCccCCCCCh--hchhccCCC-----CCCCCCc--ccc-----ccCcccccc-ccCCcCccccC-----ccccc
Q 037904          103 LLEIHLEGTAIRGLPA--SIELLFGNA-----APNLKNV--PET-----LGNVESLEV-RLSCHKRAKMQ-----NDFDC  162 (189)
Q Consensus       103 L~~l~l~~~~~~~lp~--~~~~L~~L~-----~~~l~~l--p~~-----~~~l~~L~~-l~~~~~l~~~~-----~~l~~  162 (189)
                      |+.|+|++|.+.+++.  ..+.++.|+     .+.+.++  |+.     ...+++|+. ..+-|++.+++     ..+++
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n  327 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN  327 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence            7788888887766652  345555444     2233322  221     134566666 45556665555     44455


Q ss_pred             ccceecc
Q 037904          163 VEQIAKK  169 (189)
Q Consensus       163 L~~L~l~  169 (189)
                      |+.|.+.
T Consensus       328 lk~l~~~  334 (505)
T KOG3207|consen  328 LKHLRIT  334 (505)
T ss_pred             hhhhhcc
Confidence            5555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.09  E-value=0.00012  Score=60.00  Aligned_cols=115  Identities=23%  Similarity=0.227  Sum_probs=80.8

Q ss_pred             cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      .+..+..+.+..|.+...- .+..+.+++.+++.. +.+..+...+..+++|+.|++++ +.++.+. .+..+..|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhhe
Confidence            3556667778888887744 678889999999988 56777766677899999999999 5777664 456677799999


Q ss_pred             ccCccCCCCChh--chhccCCC--CCCCCCcccc-ccCcccccc
Q 037904          108 LEGTAIRGLPAS--IELLFGNA--APNLKNVPET-LGNVESLEV  146 (189)
Q Consensus       108 l~~~~~~~lp~~--~~~L~~L~--~~~l~~lp~~-~~~l~~L~~  146 (189)
                      +.+|.+..+...  +..++.+.  ++.++.+... ...+.+++.
T Consensus       147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~  190 (414)
T KOG0531|consen  147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEE  190 (414)
T ss_pred             eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence            999999876542  34444333  5555554432 244444544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.05  E-value=4.2e-05  Score=65.53  Aligned_cols=85  Identities=18%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             hcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           28 EEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      .-++.++.|++++|+++++..+..|.+|+.||+++ +.+..+|. +...+. |+.|.+++ +-++.+- ++.++.+|+.|
T Consensus       184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~-gie~LksL~~L  259 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRN-NALTTLR-GIENLKSLYGL  259 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhHHHHhccccccccccc-chhccccccchhhhh-heeeeecc-cHHHhhh-hHHhhhhhhcc
Confidence            34567778888888777766667777888888887 56777764 333444 77787777 3454443 56677778888


Q ss_pred             EccCccCCCC
Q 037904          107 HLEGTAIRGL  116 (189)
Q Consensus       107 ~l~~~~~~~l  116 (189)
                      ++++|.+.+.
T Consensus       260 DlsyNll~~h  269 (1096)
T KOG1859|consen  260 DLSYNLLSEH  269 (1096)
T ss_pred             chhHhhhhcc
Confidence            8888776553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.02  E-value=0.0013  Score=48.31  Aligned_cols=52  Identities=21%  Similarity=0.233  Sum_probs=21.8

Q ss_pred             cEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccC-CCCCCEEeccC
Q 037904           34 WEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISA-LKYLSTLNLSG   86 (189)
Q Consensus        34 ~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~-l~~L~~L~l~~   86 (189)
                      ..+++++|.+..++.+..+..|.+|.+.+ +.++.+.+.+.. +++|+.|.+.+
T Consensus        45 d~iDLtdNdl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ceecccccchhhcccCCCccccceEEecC-CcceeeccchhhhccccceEEecC
Confidence            33444444444444444444444444444 233333333332 23344444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.99  E-value=0.00044  Score=60.21  Aligned_cols=90  Identities=23%  Similarity=0.130  Sum_probs=54.2

Q ss_pred             chhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCc-cCcccccCCCCCCEEeccCCCCCccCc-------c
Q 037904           24 SRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLE-HLPRTISALKYLSTLNLSGLLKFREFP-------E   95 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp-------~   95 (189)
                      ...+.++++|..||+++++++.+.+++++++|++|.+++-.... ..-..+.++++|+.||++.-. ....+       +
T Consensus       166 ~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~-~~~~~~ii~qYle  244 (699)
T KOG3665|consen  166 SQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK-NNDDTKIIEQYLE  244 (699)
T ss_pred             HHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc-cccchHHHHHHHH
Confidence            34566777888888888777776667777777777776633222 111245677788888877622 22111       1


Q ss_pred             ccCCCCCCcEEEccCccCC
Q 037904           96 KTSSRDELLEIHLEGTAIR  114 (189)
Q Consensus        96 ~~~~l~~L~~l~l~~~~~~  114 (189)
                      .-..++.||.|+.+++.+.
T Consensus       245 c~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  245 CGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hcccCccccEEecCCcchh
Confidence            2233667777777765443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.94  E-value=2e-05  Score=67.40  Aligned_cols=80  Identities=23%  Similarity=0.220  Sum_probs=56.1

Q ss_pred             CcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcccc-CCCCCCcEEEccC
Q 037904           33 LWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKT-SSRDELLEIHLEG  110 (189)
Q Consensus        33 L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~l~l~~  110 (189)
                      |...+++.|.+..+. ++.-+.+++.|+|++ +++..+. .+..|+.|++||+++ +.+..+|.-- ..+ .|+.|++++
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecc
Confidence            455566777777776 777778888888888 4556555 477888888888888 5677776422 223 378888888


Q ss_pred             ccCCCC
Q 037904          111 TAIRGL  116 (189)
Q Consensus       111 ~~~~~l  116 (189)
                      |.++.+
T Consensus       242 N~l~tL  247 (1096)
T KOG1859|consen  242 NALTTL  247 (1096)
T ss_pred             cHHHhh
Confidence            877664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.89  E-value=0.002  Score=47.28  Aligned_cols=59  Identities=19%  Similarity=0.264  Sum_probs=25.0

Q ss_pred             CCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC-CCCCcEEEccCccCCC
Q 037904           54 GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS-RDELLEIHLEGTAIRG  115 (189)
Q Consensus        54 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~-l~~L~~l~l~~~~~~~  115 (189)
                      ....++|++ +.+..++. +.++..|.+|.+.+ +.+..+...+.. ++.|+.|.+.+|++.+
T Consensus        43 ~~d~iDLtd-Ndl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~  102 (233)
T KOG1644|consen   43 QFDAIDLTD-NDLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQE  102 (233)
T ss_pred             ccceecccc-cchhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhh
Confidence            344445544 23333332 44445555555544 233333333222 2334555555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.85  E-value=0.00073  Score=58.87  Aligned_cols=118  Identities=21%  Similarity=0.273  Sum_probs=72.9

Q ss_pred             CCCcEEeccCCcCCc-cCccccc-CCCCCCEEeccCCCCC--ccCccccCCCCCCcEEEccCccCCCCChhchhccCCC-
Q 037904           53 FGLVQLTLNGCKNLE-HLPRTIS-ALKYLSTLNLSGLLKF--REFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNA-  127 (189)
Q Consensus        53 ~~L~~L~l~~~~~l~-~lp~~~~-~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-  127 (189)
                      .+|+.|++++...+. .-|..++ .+|+|+.|.+.+ ..+  .++.....++++|..||+++++++.+ .++++|++|+ 
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            568888887743322 2233344 578899999887 222  22334566788899999999998887 6677888777 


Q ss_pred             ----CCCCCCcc--ccccCcccccc--ccCCcCccc--cC-------cccccccceeccCCc
Q 037904          128 ----APNLKNVP--ETLGNVESLEV--RLSCHKRAK--MQ-------NDFDCVEQIAKKDSD  172 (189)
Q Consensus       128 ----~~~l~~lp--~~~~~l~~L~~--l~~~~~l~~--~~-------~~l~~L~~L~l~~~~  172 (189)
                          +-.++.-.  ..+.++++|+.  ++.-.....  +.       ..+|+|+.||+++-+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence                22333222  13566777776  322221111  11       568899999998754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=3.7e-05  Score=59.49  Aligned_cols=36  Identities=8%  Similarity=-0.000  Sum_probs=23.0

Q ss_pred             cccCcccccc--ccCCcCccc---cC-cccccccceeccCCc
Q 037904          137 TLGNVESLEV--RLSCHKRAK---MQ-NDFDCVEQIAKKDSD  172 (189)
Q Consensus       137 ~~~~l~~L~~--l~~~~~l~~---~~-~~l~~L~~L~l~~~~  172 (189)
                      .+..++.|+.  +..|-.+--   +. ...+.|.+|++.||-
T Consensus       333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            3556677777  555544321   11 778889999988874

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.00016  Score=55.64  Aligned_cols=81  Identities=15%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             CCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc--ccCCCCCCcEEE
Q 037904           30 ADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE--KTSSRDELLEIH  107 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~l~  107 (189)
                      +.+.+.|+.-||++.++.-...++.|++|.|+- +.++.+.+ +.+|++|++|++.. +.+..+.+  -++++++|+.|-
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence            345666777777777765445667777777777 45566654 66777777777776 34544443  256677777777


Q ss_pred             ccCccC
Q 037904          108 LEGTAI  113 (189)
Q Consensus       108 l~~~~~  113 (189)
                      |..|..
T Consensus        95 L~ENPC  100 (388)
T KOG2123|consen   95 LDENPC  100 (388)
T ss_pred             hccCCc
Confidence            766654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.03  E-value=0.0027  Score=29.31  Aligned_cols=18  Identities=39%  Similarity=0.635  Sum_probs=8.1

Q ss_pred             CcEEeccCCcCCccCcccc
Q 037904           55 LVQLTLNGCKNLEHLPRTI   73 (189)
Q Consensus        55 L~~L~l~~~~~l~~lp~~~   73 (189)
                      |++|++++| .++.+|.++
T Consensus         2 L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSS-EESEEGTTT
T ss_pred             ccEEECCCC-cCEeCChhh
Confidence            444555554 333444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.00013  Score=56.52  Aligned_cols=143  Identities=19%  Similarity=0.067  Sum_probs=82.2

Q ss_pred             CCcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc--ccCCCCCCcEE
Q 037904           32 TLWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE--KTSSRDELLEI  106 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~l  106 (189)
                      .+++|+++...++.-.   -++.|.+|+.|.++++.--..+-..+..=..|+.++++.|+.+++...  .+.+++.|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3677788777665432   356677777777777443333334455556788888888877765442  35677778888


Q ss_pred             EccCccCCC-CC----hh-chhccCCC---C-CCC--CCccccccCcccccc--ccCCcCccccC----cccccccceec
Q 037904          107 HLEGTAIRG-LP----AS-IELLFGNA---A-PNL--KNVPETLGNVESLEV--RLSCHKRAKMQ----NDFDCVEQIAK  168 (189)
Q Consensus       107 ~l~~~~~~~-lp----~~-~~~L~~L~---~-~~l--~~lp~~~~~l~~L~~--l~~~~~l~~~~----~~l~~L~~L~l  168 (189)
                      +++.+.... ..    .. -+.++.|.   + .++  ..+---..+.+.|..  +.+|..+..--    -.++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            887765421 11    01 12333333   0 001  011111334555555  66666665421    56778999999


Q ss_pred             cCCcch
Q 037904          169 KDSDSW  174 (189)
Q Consensus       169 ~~~~~l  174 (189)
                      +.|-.+
T Consensus       346 sRCY~i  351 (419)
T KOG2120|consen  346 SRCYDI  351 (419)
T ss_pred             hhhcCC
Confidence            998866

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.0025  Score=29.42  Aligned_cols=18  Identities=28%  Similarity=0.564  Sum_probs=8.5

Q ss_pred             CcEEEccCccCCCCChhc
Q 037904          103 LLEIHLEGTAIRGLPASI  120 (189)
Q Consensus       103 L~~l~l~~~~~~~lp~~~  120 (189)
                      |++|++++|.++.+|.++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            444555555444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.91  E-value=0.007  Score=46.00  Aligned_cols=85  Identities=18%  Similarity=0.125  Sum_probs=47.9

Q ss_pred             CCCCcEEEccCCCccCCCCccCCCCCcEEeccCC--cCCccCcccccCCCCCCEEeccCCCCCccCc--cccCCCCCCcE
Q 037904           30 ADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGC--KNLEHLPRTISALKYLSTLNLSGLLKFREFP--EKTSSRDELLE  105 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~--~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~  105 (189)
                      ...+..+.+.+..++.+..+..+++|+.|.++.|  .....++.-...+++|+++++++ ++++.+.  ..+..+.+|..
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcchhh
Confidence            3445555555555555545666677777777776  33444554445567777777777 3444322  12334445666


Q ss_pred             EEccCccCCC
Q 037904          106 IHLEGTAIRG  115 (189)
Q Consensus       106 l~l~~~~~~~  115 (189)
                      |++..+....
T Consensus       121 Ldl~n~~~~~  130 (260)
T KOG2739|consen  121 LDLFNCSVTN  130 (260)
T ss_pred             hhcccCCccc
Confidence            6666655443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.86  E-value=0.046  Score=36.79  Aligned_cols=81  Identities=14%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRD  101 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~  101 (189)
                      ++.++++|+.+.+.. .++.++  .+.++.+++.+.+.. . +..++. .+.++.+++.+.+..  .+..++. .+..+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc--cccccccccccccc
Confidence            345566777777764 456665  677777777777765 2 555553 456666777777754  3333443 345566


Q ss_pred             CCcEEEccCc
Q 037904          102 ELLEIHLEGT  111 (189)
Q Consensus       102 ~L~~l~l~~~  111 (189)
                      .|+.+.+..+
T Consensus        82 ~l~~i~~~~~   91 (129)
T PF13306_consen   82 NLKNIDIPSN   91 (129)
T ss_dssp             TECEEEETTT
T ss_pred             cccccccCcc
Confidence            7777776543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.54  E-value=0.0098  Score=25.60  Aligned_cols=16  Identities=6%  Similarity=-0.037  Sum_probs=7.3

Q ss_pred             CCcEEEccCCCccCCC
Q 037904           32 TLWEVLSDGTDIKEPL   47 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p   47 (189)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666665544

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.39  E-value=0.014  Score=44.34  Aligned_cols=63  Identities=21%  Similarity=0.232  Sum_probs=40.4

Q ss_pred             CCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCC--CccCccccCCCCCCcEEEccCccCCC
Q 037904           51 LLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLK--FREFPEKTSSRDELLEIHLEGTAIRG  115 (189)
Q Consensus        51 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~--~~~lp~~~~~l~~L~~l~l~~~~~~~  115 (189)
                      .+..|+.+.+.++. ++++- .+-.+++|+.|.++.++.  ...++--...+++|+++++++|.++.
T Consensus        41 ~~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   41 EFVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence            34556666665532 22221 134578999999998632  23344444556899999999999875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.26  E-value=0.0058  Score=47.69  Aligned_cols=81  Identities=22%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             hhcCCCCcEEEccCCCccCCC----CccCCCCCcEEeccCCcC---CccCcccccCCCCCCEEeccCCCCC--ccCcccc
Q 037904           27 WEEADTLWEVLSDGTDIKEPL----SIELLFGLVQLTLNGCKN---LEHLPRTISALKYLSTLNLSGLLKF--REFPEKT   97 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p----~~~~l~~L~~L~l~~~~~---l~~lp~~~~~l~~L~~L~l~~~~~~--~~lp~~~   97 (189)
                      -..++.++++++.+|.+.+..    -+.++++|++|++++|.-   ++++|   -...+|+.|-+.+ +.+  ......+
T Consensus        67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l  142 (418)
T KOG2982|consen   67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTSSL  142 (418)
T ss_pred             HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC-CCCChhhhhhhh
Confidence            335677889999999888753    456889999999988532   22333   2455778887766 332  1122233


Q ss_pred             CCCCCCcEEEccCc
Q 037904           98 SSRDELLEIHLEGT  111 (189)
Q Consensus        98 ~~l~~L~~l~l~~~  111 (189)
                      ..++.++.++++.|
T Consensus       143 ~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  143 DDLPKVTELHMSDN  156 (418)
T ss_pred             hcchhhhhhhhccc
Confidence            44444445544443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.24  E-value=0.0015  Score=50.44  Aligned_cols=81  Identities=19%  Similarity=0.079  Sum_probs=62.9

Q ss_pred             hhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcc--cccCCCCCCEEeccCCCCCccCcc-----ccC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPR--TISALKYLSTLNLSGLLKFREFPE-----KTS   98 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~-----~~~   98 (189)
                      ++.+|+.|+.|.++-|.|+.+..+..|+.|+.|+|+. +.+..+.+  -+.++++|+.|-+..|+....-+.     .+.
T Consensus        36 ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            4678999999999999999886688999999999999 56676654  457889999999988777665543     244


Q ss_pred             CCCCCcEEE
Q 037904           99 SRDELLEIH  107 (189)
Q Consensus        99 ~l~~L~~l~  107 (189)
                      -+++|+.|+
T Consensus       115 ~LPnLkKLD  123 (388)
T KOG2123|consen  115 VLPNLKKLD  123 (388)
T ss_pred             Hcccchhcc
Confidence            456666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.03  E-value=0.043  Score=43.02  Aligned_cols=67  Identities=21%  Similarity=0.248  Sum_probs=46.1

Q ss_pred             CCCcchh---hhcCCCCcEEEccCCCccCCC-Cc-cCCCCCcEEeccCCcCCc--cCcccccCCCCCCEEeccCC
Q 037904           20 PGNCSRL---WEEADTLWEVLSDGTDIKEPL-SI-ELLFGLVQLTLNGCKNLE--HLPRTISALKYLSTLNLSGL   87 (189)
Q Consensus        20 ~~~~~~~---~~~l~~L~~L~l~~~~l~~~p-~~-~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~~   87 (189)
                      +++++++   +.++|.|+.|+++.|.+...- +. ..+.+|++|-|.+ ..+.  .....+..++.++.|+++.|
T Consensus        83 iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   83 ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence            4555543   668999999999999876543 33 3567888888876 3222  23344567888888888874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.28  E-value=0.018  Score=45.68  Aligned_cols=87  Identities=14%  Similarity=0.079  Sum_probs=41.9

Q ss_pred             hcCCCCcEEEccCCCccCCC------CccCCCCCcEEeccCCcCCc----cCcccccCCCCCCEEeccCCCCCc----cC
Q 037904           28 EEADTLWEVLSDGTDIKEPL------SIELLFGLVQLTLNGCKNLE----HLPRTISALKYLSTLNLSGLLKFR----EF   93 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p------~~~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~~~~~~----~l   93 (189)
                      .+-+.|+.+....|.+..-+      .+...+.|+.+.+..|..-.    -+-..+.++++|+.||+.+|....    .+
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            34455666666666554433      23444555555555532211    112344556666666666543321    12


Q ss_pred             ccccCCCCCCcEEEccCccCC
Q 037904           94 PEKTSSRDELLEIHLEGTAIR  114 (189)
Q Consensus        94 p~~~~~l~~L~~l~l~~~~~~  114 (189)
                      .+.++..++|+.+++++|.++
T Consensus       234 akaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHhcccchheeecccccccc
Confidence            334444555666666555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.24  E-value=0.2  Score=33.63  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=50.9

Q ss_pred             hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSR  100 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l  100 (189)
                      ..+..++.++.+.+.++ +..++  .+.++..++.+.+..  .+..++. .+.++++++.+++..  .+..++. .+..+
T Consensus        29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~  103 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC  103 (129)
T ss_dssp             TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT-
T ss_pred             hhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhcCC
Confidence            34677888999999885 78876  788898899999965  4455554 566799999999976  2555553 45665


Q ss_pred             CCCcEEEccCccCCCCC
Q 037904          101 DELLEIHLEGTAIRGLP  117 (189)
Q Consensus       101 ~~L~~l~l~~~~~~~lp  117 (189)
                       .++.+.+.. .+..++
T Consensus       104 -~l~~i~~~~-~~~~i~  118 (129)
T PF13306_consen  104 -NLKEINIPS-NITKIE  118 (129)
T ss_dssp             -T--EEE-TT-B-SS--
T ss_pred             -CceEEEECC-CccEEC
Confidence             788887765 444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.09  E-value=0.013  Score=47.59  Aligned_cols=39  Identities=23%  Similarity=0.193  Sum_probs=24.8

Q ss_pred             ccCcccccc--ccCCcCccccC----cccccccceeccCCcchhh
Q 037904          138 LGNVESLEV--RLSCHKRAKMQ----NDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       138 ~~~l~~L~~--l~~~~~l~~~~----~~l~~L~~L~l~~~~~l~~  176 (189)
                      -..+..|..  +.+|+.+.+-.    ...++|+.+++.+|....+
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence            344555555  66777666543    5566788888888776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=0.0086  Score=44.01  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             CcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-cccc-CCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904           33 LWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTIS-ALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH  107 (189)
Q Consensus        33 L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~-~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~  107 (189)
                      ++.++-+++.|....  .+.+++.++.|.+.+|..+...- ..++ -.++|+.|++++|+++++.- ..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            556666666665544  56677788888888876655321 1122 34678889999888887643 3455666777666


Q ss_pred             ccC
Q 037904          108 LEG  110 (189)
Q Consensus       108 l~~  110 (189)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=92.76  E-value=0.084  Score=42.03  Aligned_cols=148  Identities=14%  Similarity=0.065  Sum_probs=90.5

Q ss_pred             CcchhhhcCCCCcEEEccCCCccCC--------------C-CccCCCCCcEEeccCCcCCccCc-----ccccCCCCCCE
Q 037904           22 NCSRLWEEADTLWEVLSDGTDIKEP--------------L-SIELLFGLVQLTLNGCKNLEHLP-----RTISALKYLST   81 (189)
Q Consensus        22 ~~~~~~~~l~~L~~L~l~~~~l~~~--------------p-~~~~l~~L~~L~l~~~~~l~~lp-----~~~~~l~~L~~   81 (189)
                      ...+++.++..|++|++.+|++...              - -.+.-.+|+++...+| .+..-+     ..+...+.|+.
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccce
Confidence            4457888999999999999976531              1 2344578999999884 455443     34556678999


Q ss_pred             EeccCCCCCc-----cCccccCCCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCC-----Ccccccc-C
Q 037904           82 LNLSGLLKFR-----EFPEKTSSRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLK-----NVPETLG-N  140 (189)
Q Consensus        82 L~l~~~~~~~-----~lp~~~~~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~-----~lp~~~~-~  140 (189)
                      +.+..+ .+.     .+...+..+++|+.|++..|-++.     +...++.+++|+     +..++     .+-..+. .
T Consensus       190 vr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  190 VRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             EEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            988874 332     233467889999999999987643     233344444444     22222     1111111 2


Q ss_pred             cccccc--ccCCcCcccc-------C-cccccccceeccCCc
Q 037904          141 VESLEV--RLSCHKRAKM-------Q-NDFDCVEQIAKKDSD  172 (189)
Q Consensus       141 l~~L~~--l~~~~~l~~~-------~-~~l~~L~~L~l~~~~  172 (189)
                      .+.|+.  +.+ +.++.-       + ...+.|..|++++|.
T Consensus       269 ~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  269 APSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             CCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            345555  333 333321       1 457788888888876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.96  E-value=0.16  Score=24.07  Aligned_cols=17  Identities=12%  Similarity=0.048  Sum_probs=10.5

Q ss_pred             CCCcEEEccCCCccCCC
Q 037904           31 DTLWEVLSDGTDIKEPL   47 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p   47 (189)
                      ++|+.|++++|+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45666666666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.96  E-value=0.16  Score=24.07  Aligned_cols=17  Identities=12%  Similarity=0.048  Sum_probs=10.5

Q ss_pred             CCCcEEEccCCCccCCC
Q 037904           31 DTLWEVLSDGTDIKEPL   47 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p   47 (189)
                      ++|+.|++++|+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45666666666666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.51  E-value=0.25  Score=38.38  Aligned_cols=92  Identities=23%  Similarity=0.217  Sum_probs=57.0

Q ss_pred             hhhhcCCCCcEEEccCCCccC-----CC-CccCCCCCcEEeccCCcCCcc-----------CcccccCCCCCCEEeccCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKE-----PL-SIELLFGLVQLTLNGCKNLEH-----------LPRTISALKYLSTLNLSGL   87 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~-----~p-~~~~l~~L~~L~l~~~~~l~~-----------lp~~~~~l~~L~~L~l~~~   87 (189)
                      +.+.-+..+++++++||-+..     +. .+.+-++|+..+++. -+.+.           +-..+-.|+.|+..++++|
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            334447788889999986543     23 455666777777765 22221           1233456778888888876


Q ss_pred             CCCccCcc----ccCCCCCCcEEEccCccCCCCC
Q 037904           88 LKFREFPE----KTSSRDELLEIHLEGTAIRGLP  117 (189)
Q Consensus        88 ~~~~~lp~----~~~~l~~L~~l~l~~~~~~~lp  117 (189)
                      -.-..+|+    -+..-..|.+|.+.+|....+.
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a  136 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA  136 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence            55555553    3455567778888777765543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.79  E-value=0.01  Score=44.80  Aligned_cols=82  Identities=11%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             CCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           30 ADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      ....+.|+++.|++-.+. .++-+..+..|+++. +.+.-+|..++....+..++... +.....|.+.+..++++.++.
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             cceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhh
Confidence            344556666666655555 556666667777766 55666676666666666666665 456667777777777777766


Q ss_pred             cCccC
Q 037904          109 EGTAI  113 (189)
Q Consensus       109 ~~~~~  113 (189)
                      ..+.+
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            66543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.44  E-value=0.019  Score=43.35  Aligned_cols=83  Identities=19%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             ccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChhc
Q 037904           43 IKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASI  120 (189)
Q Consensus        43 l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~  120 (189)
                      +.++|  .+...+..++||++. +.+..+-..++.++.+..|+++. +.+..+|+.++....++.+++..|..+..|.++
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~  107 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ  107 (326)
T ss_pred             hcccchhhhhccceeeeehhhh-hHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccc
Confidence            34455  556666677777776 44555555566667777777776 456667776666666666666667777777776


Q ss_pred             hhccCCC
Q 037904          121 ELLFGNA  127 (189)
Q Consensus       121 ~~L~~L~  127 (189)
                      +.++.++
T Consensus       108 ~k~~~~k  114 (326)
T KOG0473|consen  108 KKEPHPK  114 (326)
T ss_pred             cccCCcc
Confidence            6666655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=85.12  E-value=0.34  Score=40.04  Aligned_cols=35  Identities=31%  Similarity=0.423  Sum_probs=18.8

Q ss_pred             CCCCcEEeccCCcCCcc--CcccccCCCCCCEEeccC
Q 037904           52 LFGLVQLTLNGCKNLEH--LPRTISALKYLSTLNLSG   86 (189)
Q Consensus        52 l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~   86 (189)
                      ++.|+.+.+..|..+..  +-.....+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            45556666665555554  223344556666666655

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.99  E-value=0.76  Score=21.76  Aligned_cols=16  Identities=31%  Similarity=0.376  Sum_probs=9.9

Q ss_pred             CCCCCEEeccCCCCCc
Q 037904           76 LKYLSTLNLSGLLKFR   91 (189)
Q Consensus        76 l~~L~~L~l~~~~~~~   91 (189)
                      +++|+.|++++|..++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            3566777777766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 31/152 (20%)

Query: 14  RQFPQEPGNCSRLWEEADTLWEVLS-DGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPR 71
            QFP +    S L        + ++ D   + E P +++   GL  LTL     L  LP 
Sbjct: 94  PQFPDQAFRLSHL--------QHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPA 144

Query: 72  TISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI---------HLEGTAIRGLPASIEL 122
           +I++L  L  L++    +  E PE  +S D   E           LE T IR LPASI  
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204

Query: 123 L--------FGNAAPNLKNVPETLGNVESLEV 146
           L          +    L  +   + ++  LE 
Sbjct: 205 LQNLKSLKIRNS---PLSALGPAIHHLPKLEE 233

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 14  RQFPQEPGNCSRLWEEADTLWEVLSDGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPRT 72
                   +  +L EE D     L   T ++  P        L +L L  C NL  LP  
Sbjct: 219 SALGPAIHHLPKL-EELD-----LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 73  ISALKYLSTLNLSGLLKFREFPEK----TSSRDELLEIHLEGTAIRGLPASI 120
           I  L  L  L+L G +     P       ++   L+  HL+    +  P + 
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 11/113 (9%)

Query: 14  RQFPQEPGNCSRLWEEADTLWEVLS-DGTDIKE-PLSIELLFGLVQLTLNGCKNLEHLPR 71
           R  P    N   L        + L    + +     +I  L  L +L L GC  L + P 
Sbjct: 196 RSLPASIANLQNL--------KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 72  TISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG-TAIRGLPASIELL 123
                  L  L L         P       +L ++ L G   +  LP+ I  L
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 12/103 (11%), Positives = 23/103 (22%), Gaps = 17/103 (16%)

Query: 54  GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAI 113
           G   L   G   L      +S  +     + +            +           G A+
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN----PQIETRTGRAL 68

Query: 114 RGLPASIEL----------LFGNAAPNLKNVPETLGNVESLEV 146
           +     +E           L       L   P+    +  L+ 
Sbjct: 69  KATADLLEDATQPGRVALELRSV---PLPQFPDQAFRLSHLQH 108

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 14/116 (12%)

Query: 41  TDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKY--LSTLNLSGLLKFREFPEKTS 98
            +       +      Q+     + L+     +          L L   +   +FP++  
Sbjct: 43  RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-VPLPQFPDQAF 101

Query: 99  SRDELLEIHLEGTAIRGLPASI-------EL-LFGNAAPNLKNVPETLGNVESLEV 146
               L  + ++   +  LP ++        L L  N    L+ +P ++ ++  L  
Sbjct: 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN---PLRALPASIASLNRLRE 154

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 23/121 (19%)

Query: 45  EPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSG---------LLKFREFPE 95
           E LS   L  L  + L  C N+  LP  +  L  L +LN++             +    +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 96  KTSSRDELLEIHLEGTAIRGLPASIEL----------LFGNAAPNLKNVPETLGNVESLE 145
              +  ++   ++    +   PAS  L             N    ++++    G    L 
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN---KVRHLEA-FGTNVKLT 598

Query: 146 V 146
            
Sbjct: 599 D 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 21/119 (17%)

Query: 46  PLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSG--------LLKFREFPEKT 97
            L  + L  L  + +  C NL  LP  + AL  +  +N++         L    +     
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 98  SSRDELLEIHLEGTAIRGLPASIEL----------LFGNAAPNLKNVPETLGNVESLEV 146
              +++  I++    ++  P    L             N    L+      G+   L  
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN---QLEGKLPAFGSEIKLAS 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 16/103 (15%)

Query: 50  ELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE 109
            L  GL +L+++  + L  LP   S L  L   N     +    P   S    L E+ + 
Sbjct: 178 MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNN----RLTSLPALPSG---LKELIVS 229

Query: 110 GTAIRGLPASIELL-----FGNAAPNLKNVPETLGNVESLEVR 147
           G  +  LP     L      GN    L ++P     + SL V 
Sbjct: 230 GNRLTSLPVLPSELKELMVSGN---RLTSLPMLPSGLLSLSVY 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.63
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.62
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.59
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.59
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.57
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.54
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.53
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.53
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.51
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.51
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.51
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.5
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.5
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.5
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.49
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.48
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.46
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.46
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.45
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.44
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.43
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.41
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.4
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.38
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.37
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.31
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.29
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.27
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.18
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.18
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.03
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.03
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.53
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	88.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	82.85

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=8.2e-20  Score=143.46  Aligned_cols=158  Identities=24%  Similarity=0.299  Sum_probs=88.7

Q ss_pred             cchhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC--
Q 037904           23 CSRLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS--   99 (189)
Q Consensus        23 ~~~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~--   99 (189)
                      .+..+.++++|++|++++|.++.+| .+..+++|++|++++| .+..+|..+.++++|++|++++|+..+.+|..++.  
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~  174 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTD  174 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred             cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence            3333455666777777776666666 6666666777777664 34466666666666666666666555555554432  


Q ss_pred             -------CCCCcEEEccCccCCCCChhchhccCCC-----CCCCCC------------------------ccccccCccc
Q 037904          100 -------RDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKN------------------------VPETLGNVES  143 (189)
Q Consensus       100 -------l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~------------------------lp~~~~~l~~  143 (189)
                             +++|+.|++++|.+..+|..++.++.|+     .+.+..                        +|..+..+++
T Consensus       175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  254 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP  254 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred             chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence                   5555555555555555555555554444     334444                        4444555555


Q ss_pred             ccc--ccCCcCccccC---cccccccceeccCCcchhhcccccc
Q 037904          144 LEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKKNVDEGI  182 (189)
Q Consensus       144 L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~~~~~~~  182 (189)
                      |+.  +.+|+..+.+|   ..+++|++|++++|..+.. +|+++
T Consensus       255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-iP~~l  297 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR-LPSLI  297 (328)
T ss_dssp             CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC-CCGGG
T ss_pred             CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh-ccHHH
Confidence            555  44555555555   4455556666666553332 44443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1e-19  Score=142.91  Aligned_cols=150  Identities=15%  Similarity=0.248  Sum_probs=122.2

Q ss_pred             cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      ....++.|++++|+++.+| .+..+++|++|++++| .+..+|..++++++|++|++++| .+..+|..++.+++|++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS  156 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence            3578999999999999999 8999999999999995 46699999999999999999995 5668999999999999999


Q ss_pred             ccCcc-CCCCChhchh---------ccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---cccccccceec
Q 037904          108 LEGTA-IRGLPASIEL---------LFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAK  168 (189)
Q Consensus       108 l~~~~-~~~lp~~~~~---------L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l  168 (189)
                      +++|. +..+|..+..         ++.|+     .+.++.+|.++..+++|+. ....+.+..+|   ..+++|++|++
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence            99965 4567876544         77776     6788899998999988888 44445666676   56778888888


Q ss_pred             cCCcchhhccccc
Q 037904          169 KDSDSWKKNVDEG  181 (189)
Q Consensus       169 ~~~~~l~~~~~~~  181 (189)
                      ++|..... +|..
T Consensus       237 s~n~~~~~-~p~~  248 (328)
T 4fcg_A          237 RGCTALRN-YPPI  248 (328)
T ss_dssp             TTCTTCCB-CCCC
T ss_pred             cCCcchhh-hHHH
Confidence            88764333 5543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.67  E-value=7.6e-16  Score=133.17  Aligned_cols=160  Identities=13%  Similarity=0.155  Sum_probs=100.3

Q ss_pred             chhhhcCCCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccc-----
Q 037904           24 SRLWEEADTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEK-----   96 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-----   96 (189)
                      +..+..+++|++|++++|.++ .+| .+..+++|++|++++|...+.+|..+.++++|+.|++++|.....+|..     
T Consensus       483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~  562 (768)
T 3rgz_A          483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS  562 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred             CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence            344555566666666666555 334 5566666666666665544456666666666666666665433333322     


Q ss_pred             -----------------------------------------------------------------cCCCCCCcEEEccCc
Q 037904           97 -----------------------------------------------------------------TSSRDELLEIHLEGT  111 (189)
Q Consensus        97 -----------------------------------------------------------------~~~l~~L~~l~l~~~  111 (189)
                                                                                       ++.+++|+.|++++|
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N  642 (768)
T 3rgz_A          563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN  642 (768)
T ss_dssp             TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred             chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence                                                                             223455667777777


Q ss_pred             cCC-CCChhchhccCCC-----CCCCC-CccccccCcccccc--ccCCcCccccC---cccccccceeccCCcchhhccc
Q 037904          112 AIR-GLPASIELLFGNA-----APNLK-NVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKKNVD  179 (189)
Q Consensus       112 ~~~-~lp~~~~~L~~L~-----~~~l~-~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~~~~  179 (189)
                      .+. .+|..++.++.|+     .|.++ .+|.+++.+++|+.  +.+++..+.+|   ..++.|++|+++++. +.+.||
T Consensus       643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g~iP  721 (768)
T 3rgz_A          643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN-LSGPIP  721 (768)
T ss_dssp             CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE-EEEECC
T ss_pred             cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc-ccccCC
Confidence            765 4677777777776     66666 67778888888888  55555444677   667788888888876 666677


Q ss_pred             ccccc
Q 037904          180 EGIKL  184 (189)
Q Consensus       180 ~~~~~  184 (189)
                      +.-.|
T Consensus       722 ~~~~~  726 (768)
T 3rgz_A          722 EMGQF  726 (768)
T ss_dssp             SSSSG
T ss_pred             Cchhh
Confidence            65443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.66  E-value=1.2e-16  Score=135.67  Aligned_cols=156  Identities=15%  Similarity=0.236  Sum_probs=123.2

Q ss_pred             cchhhhcCCCCcEEEccCCCccC------------------CC-Ccc--CCCCCcEEeccCCcCCccCcccccCCCCCCE
Q 037904           23 CSRLWEEADTLWEVLSDGTDIKE------------------PL-SIE--LLFGLVQLTLNGCKNLEHLPRTISALKYLST   81 (189)
Q Consensus        23 ~~~~~~~l~~L~~L~l~~~~l~~------------------~p-~~~--~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~   81 (189)
                      .+..+.++++|++|++++|.++.                  +| .+.  ++++|++|++++|...+.+|..++++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            56678899999999999999998                  89 888  9999999999998888899999999999999


Q ss_pred             EeccCCCCCc--cCccccCCC------CCCcEEEccCccCCCCCh--hchhccCCC-----CCCCC-CccccccCccccc
Q 037904           82 LNLSGLLKFR--EFPEKTSSR------DELLEIHLEGTAIRGLPA--SIELLFGNA-----APNLK-NVPETLGNVESLE  145 (189)
Q Consensus        82 L~l~~~~~~~--~lp~~~~~l------~~L~~l~l~~~~~~~lp~--~~~~L~~L~-----~~~l~-~lp~~~~~l~~L~  145 (189)
                      |++++|..+.  .+|..++.+      ++|++|++++|.+..+|.  .++.++.|+     .+.+. .+| .+..+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            9999976354  588877765      889999999999888888  788888777     66677 677 677777777


Q ss_pred             c-ccCCcCccccC---ccccc-ccceeccCCcchhhccccc
Q 037904          146 V-RLSCHKRAKMQ---NDFDC-VEQIAKKDSDSWKKNVDEG  181 (189)
Q Consensus       146 ~-l~~~~~l~~~~---~~l~~-L~~L~l~~~~~l~~~~~~~  181 (189)
                      . ....+.+..+|   ..+++ |++|+++++. +. .+|+.
T Consensus       357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~  395 (636)
T 4eco_A          357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LK-YIPNI  395 (636)
T ss_dssp             EEECCSSEEEECCTTSEEECTTCCEEECCSSC-CS-SCCSC
T ss_pred             EEECCCCccccccHhhhhhcccCcEEEccCCc-Cc-ccchh
Confidence            7 44445566666   44555 7777777665 43 25544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=5.8e-15  Score=112.57  Aligned_cols=145  Identities=17%  Similarity=0.277  Sum_probs=98.8

Q ss_pred             hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRD  101 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~  101 (189)
                      .+.++++|++|++++|.++.+|  .+..+++|++|++++| .+..+|. .+.++++|+.|++++| .+..++ ..++.++
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~  133 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLT  133 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCc
Confidence            4566777777888777777776  4567777888888774 4555554 4567778888888774 444444 4567777


Q ss_pred             CCcEEEccCccCCCCChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceecc
Q 037904          102 ELLEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKK  169 (189)
Q Consensus       102 ~L~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~  169 (189)
                      +|++|++++|.+..+|.. +..++.|+     .+.++.+|. .+..+++|+. ....+.++.+|    ..+++|+.|+++
T Consensus       134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            888888888877777654 56666666     667777765 4677777877 44445677666    446778888887


Q ss_pred             CCc
Q 037904          170 DSD  172 (189)
Q Consensus       170 ~~~  172 (189)
                      ++.
T Consensus       214 ~N~  216 (270)
T 2o6q_A          214 ENP  216 (270)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=3.9e-16  Score=136.26  Aligned_cols=157  Identities=15%  Similarity=0.200  Sum_probs=126.9

Q ss_pred             cchhhhcCCCCcEEEccCCCccC------------------CC-Ccc--CCCCCcEEeccCCcCCccCcccccCCCCCCE
Q 037904           23 CSRLWEEADTLWEVLSDGTDIKE------------------PL-SIE--LLFGLVQLTLNGCKNLEHLPRTISALKYLST   81 (189)
Q Consensus        23 ~~~~~~~l~~L~~L~l~~~~l~~------------------~p-~~~--~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~   81 (189)
                      .|..+.++++|++|++++|.++.                  +| .++  ++++|+.|++++|.....+|..++++++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            56678899999999999999998                  88 777  9999999999999889999999999999999


Q ss_pred             EeccCCCCCc--cCccccCCC-------CCCcEEEccCccCCCCCh--hchhccCCC-----CCCCCCccccccCccccc
Q 037904           82 LNLSGLLKFR--EFPEKTSSR-------DELLEIHLEGTAIRGLPA--SIELLFGNA-----APNLKNVPETLGNVESLE  145 (189)
Q Consensus        82 L~l~~~~~~~--~lp~~~~~l-------~~L~~l~l~~~~~~~lp~--~~~~L~~L~-----~~~l~~lp~~~~~l~~L~  145 (189)
                      |++++|..+.  .+|..++.+       ++|+.|++++|.+..+|.  .++.+++|+     .+.+..+| .++.+++|+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~  598 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT  598 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence            9999975354  477765554       489999999999999998  888888887     67777888 788888888


Q ss_pred             c-ccCCcCccccC---ccccc-ccceeccCCcchhhcccccc
Q 037904          146 V-RLSCHKRAKMQ---NDFDC-VEQIAKKDSDSWKKNVDEGI  182 (189)
Q Consensus       146 ~-l~~~~~l~~~~---~~l~~-L~~L~l~~~~~l~~~~~~~~  182 (189)
                      . ....+.+..+|   ..+++ |+.|+++++. +. .+|+.+
T Consensus       599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~-~lp~~~  638 (876)
T 4ecn_A          599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LK-YIPNIF  638 (876)
T ss_dssp             EEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CC-SCCSCC
T ss_pred             EEECcCCccccchHHHhhccccCCEEECcCCC-CC-cCchhh
Confidence            8 44445566777   55666 8888888876 44 366543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.64  E-value=3.7e-15  Score=114.31  Aligned_cols=147  Identities=20%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             hhhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDE  102 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~  102 (189)
                      .+..+++|++|++++|.++++ | .+..+++|++|++++|..++.+ |..+..+++|++|++++|......|..+..+++
T Consensus        51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  130 (285)
T 1ozn_A           51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA  130 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence            355667777777777777766 4 6777777777777775545555 455667777777777775333333455666777


Q ss_pred             CcEEEccCccCCCCChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCcccc-C---cccccccceeccC
Q 037904          103 LLEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKM-Q---NDFDCVEQIAKKD  170 (189)
Q Consensus       103 L~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~-~---~~l~~L~~L~l~~  170 (189)
                      |++|++++|.+..++.. +..+++|+     .+.++.+|. .+..+++|+. ....+.+..+ |   ..+++|+.|++++
T Consensus       131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence            77777777777666543 55555555     556666655 3566666666 3333344444 2   4455666666666


Q ss_pred             Cc
Q 037904          171 SD  172 (189)
Q Consensus       171 ~~  172 (189)
                      +.
T Consensus       211 n~  212 (285)
T 1ozn_A          211 NN  212 (285)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=7.4e-16  Score=120.09  Aligned_cols=99  Identities=22%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             hhhhcCCCCcEEEccC-CCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904           25 RLWEEADTLWEVLSDG-TDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRD  101 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~-~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~  101 (189)
                      ..+.++++|++|++++ |++. .+| .+.++++|++|++++|.....+|..+.++++|++|++++|.....+|..++.++
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            3444455555555553 4443 234 444455555555544332224444444444444444444322223444444444


Q ss_pred             CCcEEEccCccCC-CCChhchhc
Q 037904          102 ELLEIHLEGTAIR-GLPASIELL  123 (189)
Q Consensus       102 ~L~~l~l~~~~~~-~lp~~~~~L  123 (189)
                      +|++|++++|.+. .+|..+..+
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCC
T ss_pred             CCCeEECcCCcccCcCCHHHhhh
Confidence            4444444444443 334443333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.64  E-value=3.9e-15  Score=128.73  Aligned_cols=161  Identities=14%  Similarity=0.144  Sum_probs=107.3

Q ss_pred             CcchhhhcCCCCcEEEccCCCccC-CC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCC
Q 037904           22 NCSRLWEEADTLWEVLSDGTDIKE-PL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSS   99 (189)
Q Consensus        22 ~~~~~~~~l~~L~~L~l~~~~l~~-~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   99 (189)
                      ..+..+..+++|++|++++|.+++ +| .+.++++|++|++++|.....+|.+++++++|+.|++++|.....+|..++.
T Consensus       457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  536 (768)
T 3rgz_A          457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD  536 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred             cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence            344455666777777777777764 45 6777777777777776655567777777777777777776555567777777


Q ss_pred             CCCCcEEEccCccCC-CCChhchh--------------------------------------------------------
Q 037904          100 RDELLEIHLEGTAIR-GLPASIEL--------------------------------------------------------  122 (189)
Q Consensus       100 l~~L~~l~l~~~~~~-~lp~~~~~--------------------------------------------------------  122 (189)
                      +++|+.|++++|.+. .+|..+..                                                        
T Consensus       537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  616 (768)
T 3rgz_A          537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT  616 (768)
T ss_dssp             CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred             CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            777777777777654 44543322                                                        


Q ss_pred             --------------ccCCC-----CCCCC-CccccccCcccccc--ccCCcCccccC---cccccccceeccCCcchhhc
Q 037904          123 --------------LFGNA-----APNLK-NVPETLGNVESLEV--RLSCHKRAKMQ---NDFDCVEQIAKKDSDSWKKN  177 (189)
Q Consensus       123 --------------L~~L~-----~~~l~-~lp~~~~~l~~L~~--l~~~~~l~~~~---~~l~~L~~L~l~~~~~l~~~  177 (189)
                                    ++.|+     .+.++ .+|.+++.++.|+.  +.++...+.+|   +.+++|+.|+++++. +.+.
T Consensus       617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-l~g~  695 (768)
T 3rgz_A          617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-LDGR  695 (768)
T ss_dssp             SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CEEC
T ss_pred             cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc-ccCc
Confidence                          12222     44454 56777888888888  55544444777   677888888888877 6666


Q ss_pred             cccccc
Q 037904          178 VDEGIK  183 (189)
Q Consensus       178 ~~~~~~  183 (189)
                      +|+.+.
T Consensus       696 ip~~l~  701 (768)
T 3rgz_A          696 IPQAMS  701 (768)
T ss_dssp             CCGGGG
T ss_pred             CChHHh
Confidence            776543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=8.9e-15  Score=110.40  Aligned_cols=140  Identities=18%  Similarity=0.251  Sum_probs=111.8

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l  106 (189)
                      +.++.|++++|+++.++  .+.++++|++|++++|. +..++ ..+.++++|+.|++++| .+..+| ..+..+++|++|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEE
Confidence            57899999999999886  78899999999999954 55554 45788999999999995 555555 567888999999


Q ss_pred             EccCccCCCCChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          107 HLEGTAIRGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       107 ~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      ++++|.+..+|.. +..++.|+     .+.++.+|. .+..+++|+. ....+.+..++    ..+++|+.|+++++.
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            9999999888765 57777776     788888887 5888999998 55556777776    567889999988754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.63  E-value=1.1e-14  Score=111.28  Aligned_cols=144  Identities=19%  Similarity=0.279  Sum_probs=110.0

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCc
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELL  104 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~  104 (189)
                      +..+++|++|++++|.++.++.+..+++|++|++++| .++.++. .+.++++|++|++++| .+..++ ..++.+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCC
Confidence            5678889999999998888777788889999999985 4555554 4688899999999985 455555 4478888999


Q ss_pred             EEEccCccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          105 EIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       105 ~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      +|++++|.+..++.. +..++.|+     .+.++.+|.. +..+++|+. ....+.+..++    ..+++|++|+++++.
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            999999988887654 56777776     6778887764 678888888 44445666666    567888888887753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.63  E-value=6.6e-16  Score=131.01  Aligned_cols=136  Identities=15%  Similarity=0.142  Sum_probs=113.3

Q ss_pred             cCCC-CccCCCCCcEEeccCCcCCcc------------------Cccccc--CCCCCCEEeccCCCCCccCccccCCCCC
Q 037904           44 KEPL-SIELLFGLVQLTLNGCKNLEH------------------LPRTIS--ALKYLSTLNLSGLLKFREFPEKTSSRDE  102 (189)
Q Consensus        44 ~~~p-~~~~l~~L~~L~l~~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~  102 (189)
                      +++| .++++++|++|++++|. +..                  +|..++  ++++|++|++++|.....+|..++.+++
T Consensus       196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             ccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            3477 78899999999999966 555                  999988  9999999999998888889999999999


Q ss_pred             CcEEEccCcc-CCC--CChhchhc------cCCC-----CCCCCCccc--cccCcccccc-ccCCcCcc-ccC--ccccc
Q 037904          103 LLEIHLEGTA-IRG--LPASIELL------FGNA-----APNLKNVPE--TLGNVESLEV-RLSCHKRA-KMQ--NDFDC  162 (189)
Q Consensus       103 L~~l~l~~~~-~~~--lp~~~~~L------~~L~-----~~~l~~lp~--~~~~l~~L~~-l~~~~~l~-~~~--~~l~~  162 (189)
                      |++|++++|. +..  +|..++.+      ++|+     .+.++.+|.  .++.+++|+. ....+.+. .+|  +.+++
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~  354 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK  354 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEE
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCC
Confidence            9999999998 874  88888776      7777     788889998  8999999999 44445566 888  67789


Q ss_pred             ccceeccCCcchhhcccccc
Q 037904          163 VEQIAKKDSDSWKKNVDEGI  182 (189)
Q Consensus       163 L~~L~l~~~~~l~~~~~~~~  182 (189)
                      |++|+++++. +. .+|+.+
T Consensus       355 L~~L~L~~N~-l~-~lp~~l  372 (636)
T 4eco_A          355 LASLNLAYNQ-IT-EIPANF  372 (636)
T ss_dssp             ESEEECCSSE-EE-ECCTTS
T ss_pred             CCEEECCCCc-cc-cccHhh
Confidence            9999999986 44 366543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.62  E-value=1.2e-14  Score=111.57  Aligned_cols=148  Identities=16%  Similarity=0.216  Sum_probs=120.6

Q ss_pred             chhhhcCCCCcEEEccCCC-ccCC-C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCC
Q 037904           24 SRLWEEADTLWEVLSDGTD-IKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSS   99 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~-l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~   99 (189)
                      +..+..+++|++|++++|. ++.+ | .+..+++|++|++++|......|..+.++++|++|++++| .+..++. .++.
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~  151 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRD  151 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhcc
Confidence            3457788999999999997 8888 4 8899999999999996544444667889999999999995 5666654 5889


Q ss_pred             CCCCcEEEccCccCCCCChh-chhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----ccccccccee
Q 037904          100 RDELLEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIA  167 (189)
Q Consensus       100 l~~L~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~  167 (189)
                      +++|+.|++++|.+..+|.. +..++.|+     .+.+..+ |..+..+++|+. ....+.+..++    ..+++|+.|+
T Consensus       152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence            99999999999999988764 77777777     6778777 667889999999 44556777777    6788999999


Q ss_pred             ccCCc
Q 037904          168 KKDSD  172 (189)
Q Consensus       168 l~~~~  172 (189)
                      ++++.
T Consensus       232 l~~N~  236 (285)
T 1ozn_A          232 LNDNP  236 (285)
T ss_dssp             CCSSC
T ss_pred             ccCCC
Confidence            98864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.62  E-value=1.3e-14  Score=117.92  Aligned_cols=145  Identities=14%  Similarity=0.210  Sum_probs=80.8

Q ss_pred             hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRD  101 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~  101 (189)
                      .+.++++|++|++++|+++.+|  .+..+++|+.|++++| .+..++. .+.++++|+.|++++|+.+..++. .+..++
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            3455666666666666666665  4566666666666663 3444433 455666666666666555555543 455666


Q ss_pred             CCcEEEccCccCCCCChhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceeccC
Q 037904          102 ELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKD  170 (189)
Q Consensus       102 ~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~  170 (189)
                      +|+.|++++|.+..+|. +..+++|+     .+.++.+ |..+..+++|+. ....+.+..++    ..+++|+.|++++
T Consensus       186 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             SCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             ccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            66666666666666653 44444444     4555555 334555666665 33334454443    3455566666655


Q ss_pred             Cc
Q 037904          171 SD  172 (189)
Q Consensus       171 ~~  172 (189)
                      +.
T Consensus       265 N~  266 (440)
T 3zyj_A          265 NN  266 (440)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=3.4e-15  Score=108.79  Aligned_cols=142  Identities=15%  Similarity=0.173  Sum_probs=117.7

Q ss_pred             hcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           28 EEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      ..+++|++|++++|+++.+|.+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|+.|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            567899999999999998888888999999999997 555555 688999999999999654444788899999999999


Q ss_pred             ccCccCCC-CChhchhccCCC-----CCC-CCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          108 LEGTAIRG-LPASIELLFGNA-----APN-LKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       108 l~~~~~~~-lp~~~~~L~~L~-----~~~-l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      +++|.+.. .|..+..++.|+     .+. ++.+| .+..+++|+. ....+.+..++  ..+++|++|++++..
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence            99999985 567788888777     555 88887 5888999999 55556788776  788999999998865

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=8.9e-15  Score=112.87  Aligned_cols=144  Identities=19%  Similarity=0.179  Sum_probs=95.7

Q ss_pred             hhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDEL  103 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L  103 (189)
                      ..+..+++|++|++++|.++.++....+++|++|++++ +.+..+|..+..+++|++|++++| .+..+| ..+..+++|
T Consensus        49 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGEL  126 (290)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTC
T ss_pred             HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCC
Confidence            34566677777777777777666336667777777777 456677776777777777777774 455554 456777777


Q ss_pred             cEEEccCccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC---cccccccceeccC
Q 037904          104 LEIHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ---NDFDCVEQIAKKD  170 (189)
Q Consensus       104 ~~l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~---~~l~~L~~L~l~~  170 (189)
                      +.|++++|.+..+|.. +..++.|+     .+.++.+|.. +..+++|+. ....+.++.+|   ....+|+.+++.+
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence            7777777777776554 45555555     6677777764 456777777 44556677777   3345677777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=1.9e-14  Score=111.04  Aligned_cols=147  Identities=18%  Similarity=0.212  Sum_probs=119.9

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      ++++.|++++|.++.++  .+..+++|+.|++++| .++.++.. ..+++|+.|++++ +.+..+|..+..+++|+.|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEEC
Confidence            57899999999998885  7899999999999994 57777664 7899999999999 577889988889999999999


Q ss_pred             cCccCCCCCh-hchhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCcchhh
Q 037904          109 EGTAIRGLPA-SIELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       109 ~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~~l~~  176 (189)
                      ++|.+..+|. .+..++.|+     .+.++.+|.. +..+++|+. ....+.++.+|    ..+++|++|+++++. +..
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~  186 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYT  186 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCc
Confidence            9999998864 577777777     7888888874 678889998 55667888888    457889999998876 443


Q ss_pred             cccccc
Q 037904          177 NVDEGI  182 (189)
Q Consensus       177 ~~~~~~  182 (189)
                       +|+++
T Consensus       187 -ip~~~  191 (290)
T 1p9a_G          187 -IPKGF  191 (290)
T ss_dssp             -CCTTT
T ss_pred             -cChhh
Confidence             55543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=4.4e-15  Score=114.97  Aligned_cols=143  Identities=15%  Similarity=0.163  Sum_probs=73.6

Q ss_pred             cCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc--cccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904           29 EADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR--TISALKYLSTLNLSGLLKFREFPEKTSSRDELLE  105 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  105 (189)
                      .+++|++|++++|.++.+| .+..+++|++|++++| .+..++.  .+.++++|+.|++++|......+..+..+++|+.
T Consensus        76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             cccccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            3444555555555444444 4555555555555553 2333332  4555566666666654333333444555566666


Q ss_pred             EEccCccCCC--CChhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          106 IHLEGTAIRG--LPASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       106 l~l~~~~~~~--lp~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      |++++|.+..  +|..+..++.|+     .+.++.+ |..+..+++|+. ....+.+..++    ..+++|+.|+++++.
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            6666665543  455555555554     4555555 334556666666 33334444444    345566666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.59  E-value=2.6e-14  Score=116.50  Aligned_cols=144  Identities=16%  Similarity=0.212  Sum_probs=79.5

Q ss_pred             hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDE  102 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  102 (189)
                      +.++++|++|++++|.++.+|  .+.++++|++|++++| .+..+|. .+.++++|+.|++++|+.+..++. .+..+++
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  197 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN  197 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence            444555555555555555554  3555555556665553 2334332 445555566666655555555543 3556666


Q ss_pred             CcEEEccCccCCCCChhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceeccCC
Q 037904          103 LLEIHLEGTAIRGLPASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDS  171 (189)
Q Consensus       103 L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~  171 (189)
                      |+.|++++|.+..+|. +..+++|+     .+.++.+ |..+..+++|+. ....+.+..++    ..+++|+.|+++++
T Consensus       198 L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          198 LKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             CCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            6777776666666543 44444444     5556555 335666666666 33334455443    44566667776665


Q ss_pred             c
Q 037904          172 D  172 (189)
Q Consensus       172 ~  172 (189)
                      .
T Consensus       277 ~  277 (452)
T 3zyi_A          277 N  277 (452)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.59  E-value=3.1e-14  Score=108.71  Aligned_cols=146  Identities=19%  Similarity=0.335  Sum_probs=119.9

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLE  105 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~  105 (189)
                      ...+++|++|++++|.++.++.+..+++|++|++++| .+..++ .+.++++|++|++++| .+..++ ..++.+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence            4567899999999999998888889999999999995 466665 6889999999999996 555555 45789999999


Q ss_pred             EEccCccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCcc
Q 037904          106 IHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSDS  173 (189)
Q Consensus       106 l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~~  173 (189)
                      |++++|.+..++.. ++.++.|+     .+.++.+|.. +..+++|+. ....+.+..++    ..+++|++|+++++. 
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-  192 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-  192 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-
Confidence            99999999988764 67777777     7788888764 688999999 44456777777    567899999999986 


Q ss_pred             hhh
Q 037904          174 WKK  176 (189)
Q Consensus       174 l~~  176 (189)
                      +.+
T Consensus       193 l~~  195 (272)
T 3rfs_A          193 LKS  195 (272)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.59  E-value=6.3e-15  Score=110.34  Aligned_cols=139  Identities=8%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH  107 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~  107 (189)
                      ++++|++++|+++.+|  .+.++++|++|++++|..++.++. .+.++++|++|++++|+.++.+| ..+..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            4555666666555554  455555666666655433444443 45555566666665533444444 3445555555555


Q ss_pred             ccCccCCCCChhchhccCCC--------CC-CCCCccc-cccCccccc-c-ccCCcCccccC-c--ccccccceeccCC
Q 037904          108 LEGTAIRGLPASIELLFGNA--------AP-NLKNVPE-TLGNVESLE-V-RLSCHKRAKMQ-N--DFDCVEQIAKKDS  171 (189)
Q Consensus       108 l~~~~~~~lp~~~~~L~~L~--------~~-~l~~lp~-~~~~l~~L~-~-l~~~~~l~~~~-~--~l~~L~~L~l~~~  171 (189)
                      +++|.+..+|. +..++.|+        .+ .++.+|. .+..+++|+ . ....+.++.+| .  ..++|+.|+++++
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            55555555544 33333332        33 4444443 244455555 4 22223344444 1  1134555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.59  E-value=4.1e-15  Score=115.88  Aligned_cols=157  Identities=12%  Similarity=0.128  Sum_probs=109.6

Q ss_pred             CcchhhhcCCCCcEEEccCCCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCC-CCCEEeccCCCCCccCccccC
Q 037904           22 NCSRLWEEADTLWEVLSDGTDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALK-YLSTLNLSGLLKFREFPEKTS   98 (189)
Q Consensus        22 ~~~~~~~~l~~L~~L~l~~~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~   98 (189)
                      ..+..+.++++|++|++++|.++ .+| .+..+++|++|++++|.....+|..+.+++ +|+.|++++|.....+|..+.
T Consensus       116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~  195 (313)
T 1ogq_A          116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence            34556778889999999999888 457 888889999999988655447888888887 888998888654446777777


Q ss_pred             CCCCCcEEEccCccCCC-CChhchhccCCC-----CCCCCCccccccCcccccc--ccCCcCcc-ccC---cccccccce
Q 037904           99 SRDELLEIHLEGTAIRG-LPASIELLFGNA-----APNLKNVPETLGNVESLEV--RLSCHKRA-KMQ---NDFDCVEQI  166 (189)
Q Consensus        99 ~l~~L~~l~l~~~~~~~-lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~--l~~~~~l~-~~~---~~l~~L~~L  166 (189)
                      .+. |+.|++++|.+.. .|..+..++.|+     .+.++..+..+..+++|+.  +.+ +.+. .+|   ..+++|++|
T Consensus       196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L  273 (313)
T 1ogq_A          196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEE
T ss_pred             CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC-CcccCcCChHHhcCcCCCEE
Confidence            776 8888888877764 455566666666     5555554444666677776  444 3343 555   456677777


Q ss_pred             eccCCcchhhccccc
Q 037904          167 AKKDSDSWKKNVDEG  181 (189)
Q Consensus       167 ~l~~~~~l~~~~~~~  181 (189)
                      +++++. +.+.+|+.
T Consensus       274 ~Ls~N~-l~~~ip~~  287 (313)
T 1ogq_A          274 NVSFNN-LCGEIPQG  287 (313)
T ss_dssp             ECCSSE-EEEECCCS
T ss_pred             ECcCCc-ccccCCCC
Confidence            777765 55445554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.59  E-value=7.4e-14  Score=106.42  Aligned_cols=143  Identities=20%  Similarity=0.279  Sum_probs=117.5

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l  106 (189)
                      +++++|++++|+++.++  .+.++++|++|++++| .+..+|.. +.++++|++|++++| .+..+|. .+..+++|++|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence            57999999999999987  7999999999999995 56777765 578999999999995 5666664 56889999999


Q ss_pred             EccCccCCCCCh-hchhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCcch
Q 037904          107 HLEGTAIRGLPA-SIELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSDSW  174 (189)
Q Consensus       107 ~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~~l  174 (189)
                      ++++|.+..++. .+..+++|+     .+.++.+|.. +..+++|+. ....+.+..++    ..+++|++|+++++. +
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l  193 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-L  193 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-C
Confidence            999999998865 467777777     7888888874 788999999 44556777777    457899999999985 5


Q ss_pred             hh
Q 037904          175 KK  176 (189)
Q Consensus       175 ~~  176 (189)
                      ..
T Consensus       194 ~~  195 (270)
T 2o6q_A          194 KR  195 (270)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.58  E-value=2.8e-14  Score=108.91  Aligned_cols=108  Identities=17%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-ccCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-KTSSRD  101 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~  101 (189)
                      .+.++++|++|++++|.++.++  .+.++++|++|++++|. +..++ ..+.++++|+.|++++| .+..++. .++.++
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~  124 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK  124 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCT
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC-CccccCchhcccCC
Confidence            3556667777777777776664  56667777777777643 33333 45666667777777664 3333332 466666


Q ss_pred             CCcEEEccCccCCC--CChhchhccCCC-----CCCCCCcc
Q 037904          102 ELLEIHLEGTAIRG--LPASIELLFGNA-----APNLKNVP  135 (189)
Q Consensus       102 ~L~~l~l~~~~~~~--lp~~~~~L~~L~-----~~~l~~lp  135 (189)
                      +|++|++++|.+..  +|..+..+++|+     .+.++.++
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            67777777666654  456666666655     44555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.58  E-value=2.6e-14  Score=104.77  Aligned_cols=147  Identities=20%  Similarity=0.240  Sum_probs=111.7

Q ss_pred             CCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcE
Q 037904           30 ADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLE  105 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~  105 (189)
                      .+++++|++++|+++.++  .+..+++|++|++++| .++.+|. .+.++++|++|++++| .+..+|. .++.+++|+.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence            457999999999999887  5789999999999995 5667765 4678999999999995 5666664 4688999999


Q ss_pred             EEccCccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc--ccCCcCccccCcccccccceeccCCcchhh
Q 037904          106 IHLEGTAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV--RLSCHKRAKMQNDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       106 l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~--l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~  176 (189)
                      |++++|.+..++.. +..++.|+     .+.++.+|.. +..+++|+.  +.++. +   .+.+++|+.|++.... +.+
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~---~~~~~~l~~L~~~~n~-~~g  179 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W---DCTCPGIRYLSEWINK-HSG  179 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B---CCCTTTTHHHHHHHHH-CTT
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e---ecCCCCHHHHHHHHHh-CCc
Confidence            99999999888764 57777776     6788888774 778888888  55442 1   2556677777776654 555


Q ss_pred             ccccccc
Q 037904          177 NVDEGIK  183 (189)
Q Consensus       177 ~~~~~~~  183 (189)
                      .+|+++.
T Consensus       180 ~ip~~~~  186 (208)
T 2o6s_A          180 VVRNSAG  186 (208)
T ss_dssp             TBBCTTS
T ss_pred             eeeccCc
Confidence            5666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=5.5e-14  Score=109.24  Aligned_cols=140  Identities=15%  Similarity=0.244  Sum_probs=81.5

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|++|++++|.+++++.+..+++|++|++++| .++.++ .+..+++|+.|++++| .+..++. +..+++|+.|
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L  134 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVL  134 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEE
T ss_pred             hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEE
Confidence            4556677777777776666655566666777777664 355554 3666666777776663 4444543 5666666666


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      ++++|.+..++. +..++.|+     .+.++.++. +..+++|+. ....+.+..++  ..+++|++|+++++.
T Consensus       135 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          135 YLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             ECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCc
Confidence            666666665544 44555554     455555554 555555555 33334444444  445555555555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=6.5e-15  Score=128.61  Aligned_cols=134  Identities=16%  Similarity=0.169  Sum_probs=113.5

Q ss_pred             CC-CccCCCCCcEEeccCCcCCcc------------------Cccccc--CCCCCCEEeccCCCCCccCccccCCCCCCc
Q 037904           46 PL-SIELLFGLVQLTLNGCKNLEH------------------LPRTIS--ALKYLSTLNLSGLLKFREFPEKTSSRDELL  104 (189)
Q Consensus        46 ~p-~~~~l~~L~~L~l~~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  104 (189)
                      +| .+.++++|+.|++++|. +..                  +|..++  ++++|+.|++++|.....+|..++.+++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            77 88999999999999965 555                  899887  999999999999888889999999999999


Q ss_pred             EEEccCcc-CCC--CChhchhcc-------CCC-----CCCCCCccc--cccCcccccc-ccCCcCccccC--ccccccc
Q 037904          105 EIHLEGTA-IRG--LPASIELLF-------GNA-----APNLKNVPE--TLGNVESLEV-RLSCHKRAKMQ--NDFDCVE  164 (189)
Q Consensus       105 ~l~l~~~~-~~~--lp~~~~~L~-------~L~-----~~~l~~lp~--~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~  164 (189)
                      .|++++|. +..  +|..++.++       +|+     .+.+..+|.  .+..+++|+. ....+.+..+|  +.+++|+
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~  598 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT  598 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence            99999998 774  888887776       666     788889998  8999999999 44556677888  7789999


Q ss_pred             ceeccCCcchhhcccccc
Q 037904          165 QIAKKDSDSWKKNVDEGI  182 (189)
Q Consensus       165 ~L~l~~~~~l~~~~~~~~  182 (189)
                      .|+++++. +. .+|+.+
T Consensus       599 ~L~Ls~N~-l~-~lp~~l  614 (876)
T 4ecn_A          599 DLKLDYNQ-IE-EIPEDF  614 (876)
T ss_dssp             EEECCSSC-CS-CCCTTS
T ss_pred             EEECcCCc-cc-cchHHH
Confidence            99999987 44 366543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.57  E-value=3.9e-14  Score=115.03  Aligned_cols=146  Identities=20%  Similarity=0.267  Sum_probs=124.0

Q ss_pred             hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRD  101 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~  101 (189)
                      ..+..+++|++|++++|.++.+|  .+..+++|+.|++++|+.+..++. .+.++++|+.|++++| .+..+|. +..++
T Consensus       130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~  207 (440)
T 3zyj_A          130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-LTPLI  207 (440)
T ss_dssp             TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC-CTTCS
T ss_pred             hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc-cCCCc
Confidence            45778999999999999999987  789999999999999888888876 6889999999999995 6778874 78889


Q ss_pred             CCcEEEccCccCCCC-ChhchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceecc
Q 037904          102 ELLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKK  169 (189)
Q Consensus       102 ~L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~  169 (189)
                      +|+.|++++|.+..+ |..+..++.|+     .+.++.++. .+..+++|+. ....+.+..++    ..+++|+.|+++
T Consensus       208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  287 (440)
T 3zyj_A          208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH  287 (440)
T ss_dssp             SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred             ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence            999999999999886 56788888887     778888754 6888999999 55557788887    567899999998


Q ss_pred             CCc
Q 037904          170 DSD  172 (189)
Q Consensus       170 ~~~  172 (189)
                      +..
T Consensus       288 ~Np  290 (440)
T 3zyj_A          288 HNP  290 (440)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            843

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.56  E-value=6.7e-14  Score=108.77  Aligned_cols=140  Identities=12%  Similarity=0.170  Sum_probs=116.6

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|++|++++|.++.++.+..+++|++|++++| .+..++. +..+++|+.|++++| .+..++. ++.+++|+.|
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L  156 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYL  156 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEE
T ss_pred             HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEE
Confidence            7788999999999999998888888999999999995 5677765 889999999999995 5666665 7888999999


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      ++++|.+..++. +..++.|+     .+.++.++. +..+++|+. ..+.+.+..++  ..+++|+.|+++++.
T Consensus       157 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          157 SIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             EccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence            999999988776 77777776     778888876 888888988 44556677766  778899999988865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.55  E-value=1.8e-14  Score=121.04  Aligned_cols=102  Identities=12%  Similarity=-0.034  Sum_probs=50.7

Q ss_pred             hhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEKTSSRDEL  103 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  103 (189)
                      .+..+++|++|++++|.++.+| .+..+++|+.|++++|......| ..+.++++|+.|++++|......|..++.+++|
T Consensus       371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  450 (606)
T 3vq2_A          371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL  450 (606)
T ss_dssp             HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence            3445556666666666555555 55555566666665543322223 244555555555555543333344444445555


Q ss_pred             cEEEccCccCCC--CChhchhccCCC
Q 037904          104 LEIHLEGTAIRG--LPASIELLFGNA  127 (189)
Q Consensus       104 ~~l~l~~~~~~~--lp~~~~~L~~L~  127 (189)
                      +.|++++|.+..  +|..++.++.|+
T Consensus       451 ~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          451 NTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CEEECCCCcCCCcchHHhhccCCCCC
Confidence            555555554443  344444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=4.9e-14  Score=114.84  Aligned_cols=139  Identities=16%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l  106 (189)
                      ++++.|++++|+++.++  .+.++++|+.|++++|. +..+ +..+.++++|++|++++| .+..+|. .+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence            45777777777777764  67777777777777754 3443 356677777777777774 4555553 46677777777


Q ss_pred             EccCccCCCCCh-hchhccCCC------CCCCCCccc-cccCcccccc-ccCCcCccccC--cccccccceeccCC
Q 037904          107 HLEGTAIRGLPA-SIELLFGNA------APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDS  171 (189)
Q Consensus       107 ~l~~~~~~~lp~-~~~~L~~L~------~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~  171 (189)
                      ++++|.+..+|. .+..++.|+      ++.+..++. .+..+++|+. ....+.+..+|  ..+++|+.|+++++
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCC
Confidence            777777776654 345555554      344555544 3455555555 33334444444  44445555555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.55  E-value=8.9e-14  Score=107.29  Aligned_cols=140  Identities=14%  Similarity=0.177  Sum_probs=92.9

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|++|++++|++++++.+..+++|++|++++| .+..+|. +..+++|+.|++++| .+..++ .+..+++|+.|
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L  139 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESL  139 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEE
T ss_pred             HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEE
Confidence            4556677777777777766655666777777777764 3555544 667777777777774 455553 46667777777


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      ++++|.+..+ ..+..+++|+     .+.++.++. +..+++|+. ..+.+.+..++  ..+++|+.|+++++.
T Consensus       140 ~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          140 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             EccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence            7777777666 4455666665     566777665 777777777 44445677666  667777777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=1.2e-13  Score=116.37  Aligned_cols=88  Identities=19%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPEKTSSRDEL  103 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  103 (189)
                      +..+++|++|++++|.++.+|  .++++++|++|++++| .+..+|.. ++++++|++|++++|......|..++.+++|
T Consensus        95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  173 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  173 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence            444555555555555555554  3455555555555553 34444443 3555555555555543222233345555555


Q ss_pred             cEEEccCccCCC
Q 037904          104 LEIHLEGTAIRG  115 (189)
Q Consensus       104 ~~l~l~~~~~~~  115 (189)
                      +.|++++|.+..
T Consensus       174 ~~L~L~~N~l~~  185 (597)
T 3oja_B          174 QNLQLSSNRLTH  185 (597)
T ss_dssp             CEEECTTSCCSB
T ss_pred             cEEECcCCCCCC
Confidence            555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.54  E-value=6.1e-14  Score=114.76  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             hhhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRDE  102 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~  102 (189)
                      .+.++++|++|++++|.++.+ | .+.++++|++|++++| .+..+|. .+.++++|+.|++++|......|..+..+++
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            455666777777777776666 4 6667777777777763 4555554 3566777777777764433334455666666


Q ss_pred             CcEEEccCccCCCC-ChhchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC----cccccccceeccC
Q 037904          103 LLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKD  170 (189)
Q Consensus       103 L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~  170 (189)
                      |+.|++++|.+..+ +..+..+++|+     .+.++.+|. .+..+++|+. ....+.+..++    ..+++|+.|++++
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence            77777766666554 33455555555     455655554 3555555555 22223344333    3445555555555


Q ss_pred             Cc
Q 037904          171 SD  172 (189)
Q Consensus       171 ~~  172 (189)
                      +.
T Consensus       210 ~~  211 (477)
T 2id5_A          210 WP  211 (477)
T ss_dssp             CT
T ss_pred             Cc
Confidence            44

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=2e-13  Score=101.79  Aligned_cols=114  Identities=22%  Similarity=0.276  Sum_probs=78.7

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l  106 (189)
                      ++|+.|++++|+++.++  .+.++++|+.|++++| .++.+|. .+.++++|+.|++++| .+..+|. .+..+++|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence            56777788777777773  6777777888888774 4566654 3567777888888774 5555554 35677777888


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccc-cccCcccccc
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPE-TLGNVESLEV  146 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~  146 (189)
                      ++++|.+..+|..+..++.|+     .|.++.+|. .+..+++|+.
T Consensus       118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  163 (229)
T 3e6j_A          118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH  163 (229)
T ss_dssp             ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            887777777777766666666     566666664 3566666666

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=1.7e-14  Score=107.91  Aligned_cols=151  Identities=9%  Similarity=0.109  Sum_probs=114.3

Q ss_pred             hhhcCCCCcEEEccCCC-ccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904           26 LWEEADTLWEVLSDGTD-IKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEKTSSRD  101 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~-l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~  101 (189)
                      .+..+++|++|++++|. ++.++  .+.++++|++|++++|+.++.++ ..+.++++|+.|++++| .+..+|. +..+.
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccc
Confidence            56778899999999996 88886  78899999999999855677776 46788999999999985 5677886 77777


Q ss_pred             CCc---EEEccCc-cCCCCChh-chhccCCC------CCCCCCccccccCcccccc--ccCCcCccccC----ccc-ccc
Q 037904          102 ELL---EIHLEGT-AIRGLPAS-IELLFGNA------APNLKNVPETLGNVESLEV--RLSCHKRAKMQ----NDF-DCV  163 (189)
Q Consensus       102 ~L~---~l~l~~~-~~~~lp~~-~~~L~~L~------~~~l~~lp~~~~~l~~L~~--l~~~~~l~~~~----~~l-~~L  163 (189)
                      +|+   .+++++| .+..+|.. +..++.|+      .+.++.+|......++|+.  +.++..++.++    ..+ ++|
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence            887   9999998 88887653 56665554      6778888875444477888  55543577776    456 788


Q ss_pred             cceeccCCcchhhcccc
Q 037904          164 EQIAKKDSDSWKKNVDE  180 (189)
Q Consensus       164 ~~L~l~~~~~l~~~~~~  180 (189)
                      +.|+++++. +.. +|.
T Consensus       208 ~~L~l~~N~-l~~-l~~  222 (239)
T 2xwt_C          208 SLLDVSQTS-VTA-LPS  222 (239)
T ss_dssp             SEEECTTCC-CCC-CCC
T ss_pred             cEEECCCCc-ccc-CCh
Confidence            999988864 444 443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=6.4e-14  Score=106.62  Aligned_cols=140  Identities=19%  Similarity=0.238  Sum_probs=111.4

Q ss_pred             hhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904           26 LWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLE  105 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  105 (189)
                      .+..+++|++|++++|+++.+|.+..+++|+.|++++| .+..++. +.++++|+.|++++| .+..+|....  .+|+.
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~  110 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSR  110 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCE
T ss_pred             chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccE
Confidence            35678899999999999988887788899999999984 6777777 889999999999984 6777775433  78999


Q ss_pred             EEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          106 IHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       106 l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      |++++|.+..++ .+..+++|+     .+.++.++ .+..+++|+. ....+.+..++  ..+++|+.|+++++.
T Consensus       111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             EEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence            999999988875 477777776     77888886 5888888888 44446677666  678888888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.54  E-value=1.8e-13  Score=109.27  Aligned_cols=88  Identities=19%  Similarity=0.153  Sum_probs=45.6

Q ss_pred             hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPEKTSSRDEL  103 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  103 (189)
                      +..+++|++|++++|.++.++  .+.++++|++|++++| .++.+|.. +.++++|++|++++|......|..++.+++|
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence            445555555555555555553  4555555666666553 34455543 3555566666665532222223345555555


Q ss_pred             cEEEccCccCCC
Q 037904          104 LEIHLEGTAIRG  115 (189)
Q Consensus       104 ~~l~l~~~~~~~  115 (189)
                      +.|++++|.+..
T Consensus       168 ~~L~l~~n~l~~  179 (390)
T 3o6n_A          168 QNLQLSSNRLTH  179 (390)
T ss_dssp             CEEECCSSCCSB
T ss_pred             CEEECCCCcCCc
Confidence            555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.53  E-value=1.2e-13  Score=116.05  Aligned_cols=103  Identities=19%  Similarity=0.094  Sum_probs=73.1

Q ss_pred             hhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDE  102 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  102 (189)
                      ..+..+++|++|++++|.++++| .+..+++|++|++++|......|..+.++++|+.|++++|.....+|. .++.+++
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            44677888999999998888888 888888899999888654333455677888888888887654445554 3667777


Q ss_pred             CcEEEccCccCCCC---ChhchhccCCC
Q 037904          103 LLEIHLEGTAIRGL---PASIELLFGNA  127 (189)
Q Consensus       103 L~~l~l~~~~~~~l---p~~~~~L~~L~  127 (189)
                      |+.|++++|.+..+   +..+..++.|+
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~  379 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQ  379 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred             CCEEECCCCccccccCcchhcccCCCCC
Confidence            77777777766554   44455555555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=113.12  Aligned_cols=128  Identities=16%  Similarity=0.118  Sum_probs=97.8

Q ss_pred             chhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904           24 SRLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRD  101 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~  101 (189)
                      +..+.++++|++|++++|.++.+|  .+.++++|++|++++|......|..+.++++|+.|++++|......+..+..++
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  152 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN  152 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred             hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence            355778899999999999999998  578999999999999765555567788999999999999644444456788899


Q ss_pred             CCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc--ccCCc
Q 037904          102 ELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV--RLSCH  151 (189)
Q Consensus       102 ~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~--l~~~~  151 (189)
                      +|+.|++++|.+..++. .+..++.|+     .+.+..++. .+..+++|+.  +.+|+
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            99999999999988875 366666666     555655544 4555555555  44443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.53  E-value=1.3e-13  Score=106.44  Aligned_cols=140  Identities=18%  Similarity=0.283  Sum_probs=117.9

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      ...+++|+.|++++|.++.++.+..+++|++|++++| .+..++. +.++++|+.|++++| .+..+|. ++.+++|+.|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred             hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence            4567899999999999999888888999999999995 5777777 899999999999995 5666664 8999999999


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      ++++|.+..+ ..+..++.|+     .+.++.+ ..+..+++|+. ....+.+..++  ..+++|+.|+++++.
T Consensus       118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCc
Confidence            9999999887 4577777777     7788888 46889999999 44556777776  788999999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=2e-13  Score=114.90  Aligned_cols=64  Identities=16%  Similarity=0.107  Sum_probs=49.8

Q ss_pred             chhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 037904           24 SRLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGL   87 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~   87 (189)
                      +..+.++++|++|++++|.++.+|  .+.++++|++|++++|......|..+.++++|+.|++++|
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            345678888999999999888887  4688889999999886544444456888888888888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.51  E-value=4.9e-13  Score=100.78  Aligned_cols=128  Identities=20%  Similarity=0.274  Sum_probs=104.8

Q ss_pred             hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccc-cCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEK-TSSR  100 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l  100 (189)
                      ..+.++++|++|++++|.++.++  .+..+++|++|++++| .++.+| ..+..+++|+.|++++| .+..+|.. +..+
T Consensus        53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  130 (251)
T 3m19_A           53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRL  130 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccC
Confidence            45778899999999999999986  6899999999999995 466666 45789999999999995 66677654 6889


Q ss_pred             CCCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCcc
Q 037904          101 DELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRA  154 (189)
Q Consensus       101 ~~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~  154 (189)
                      ++|+.|++++|.+..+|. .+..++.|+     .+.++.+|. .+..+++|+. ....|.+.
T Consensus       131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            999999999999999876 577788777     788888876 6888888888 33334443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.51  E-value=1.6e-13  Score=104.76  Aligned_cols=125  Identities=21%  Similarity=0.177  Sum_probs=101.3

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccC-ccccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREF-PEKTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~l  106 (189)
                      +++++|++++|+++.++  .+.++++|++|++++| .+..++ ..+.++++|++|++++|. +..+ +..+..+++|+.|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence            46999999999999986  7899999999999996 455555 478899999999999964 5444 4678999999999


Q ss_pred             EccCccCCCCCh-hchhccCCC-----CCCCCC--ccccccCcccccc-ccCCcCccccC
Q 037904          107 HLEGTAIRGLPA-SIELLFGNA-----APNLKN--VPETLGNVESLEV-RLSCHKRAKMQ  157 (189)
Q Consensus       107 ~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~--lp~~~~~l~~L~~-l~~~~~l~~~~  157 (189)
                      ++++|.+..++. .++.++.|+     .+.++.  +|..+..+++|+. ....+.++.++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            999999988765 577777777     677776  6788999999988 44445565554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.51  E-value=1.4e-13  Score=106.47  Aligned_cols=148  Identities=15%  Similarity=0.153  Sum_probs=117.8

Q ss_pred             hhhhcCCCCcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCc-cCccccCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFR-EFPEKTSSR  100 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l  100 (189)
                      ..+..+++|++|++++|.++.++   .+..+++|++|++++|......+..+.++++|+.|++++|.... .+|..+..+
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  174 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  174 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence            34667899999999999998875   68889999999999976555566778899999999999964333 478889999


Q ss_pred             CCCcEEEccCccCCCC-ChhchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCcccc-C---ccc-cccccee
Q 037904          101 DELLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKM-Q---NDF-DCVEQIA  167 (189)
Q Consensus       101 ~~L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~-~---~~l-~~L~~L~  167 (189)
                      ++|+.|++++|.+..+ |..+..++.|+     .+.++.++. .+..+++|+. ....+.+... +   ..+ ++|++|+
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            9999999999999886 56777777777     778888876 6888999999 3344555554 3   444 5899999


Q ss_pred             ccCCc
Q 037904          168 KKDSD  172 (189)
Q Consensus       168 l~~~~  172 (189)
                      ++++.
T Consensus       255 L~~N~  259 (306)
T 2z66_A          255 LTQND  259 (306)
T ss_dssp             CTTCC
T ss_pred             ccCCC
Confidence            98864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.50  E-value=4.5e-13  Score=104.72  Aligned_cols=94  Identities=22%  Similarity=0.167  Sum_probs=56.3

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      +.++.|++++|++++++  .+.++++|++|++++|......|..+.++++|++|++++| .+..+|..+.  ++|+.|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence            45677777777777765  5677777777777774433333566777777777777763 4555655443  45666666


Q ss_pred             cCccCCCCCh-hchhccCCC
Q 037904          109 EGTAIRGLPA-SIELLFGNA  127 (189)
Q Consensus       109 ~~~~~~~lp~-~~~~L~~L~  127 (189)
                      ++|.+..++. .+..++.|+
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCC
T ss_pred             CCCcccccCHhHhcCCcccc
Confidence            6665555443 234444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.50  E-value=6e-13  Score=104.02  Aligned_cols=151  Identities=14%  Similarity=0.218  Sum_probs=92.4

Q ss_pred             hhhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDE  102 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~  102 (189)
                      .+..+++|++|++++|.++.+ | .+..+++|++|++++| .++.+|..+.  ++|+.|++++| .+..++ ..+..+++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~  146 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQ  146 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTT
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCcc
Confidence            467788899999999988887 5 8888889999999884 4666665443  45666666553 233332 23444455


Q ss_pred             CcEEEccCccCCC---CChhchhccCCC--------------------------CCCCCCc-cccccCcccccc-ccCCc
Q 037904          103 LLEIHLEGTAIRG---LPASIELLFGNA--------------------------APNLKNV-PETLGNVESLEV-RLSCH  151 (189)
Q Consensus       103 L~~l~l~~~~~~~---lp~~~~~L~~L~--------------------------~~~l~~l-p~~~~~l~~L~~-l~~~~  151 (189)
                      |+.|++++|.+..   .+..+..++.|+                          .+.++.+ |..+..+++|+. ....+
T Consensus       147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  226 (330)
T 1xku_A          147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  226 (330)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            5555555544431   223333333333                          4455555 345777777877 44445


Q ss_pred             CccccC----cccccccceeccCCcchhhcccccc
Q 037904          152 KRAKMQ----NDFDCVEQIAKKDSDSWKKNVDEGI  182 (189)
Q Consensus       152 ~l~~~~----~~l~~L~~L~l~~~~~l~~~~~~~~  182 (189)
                      .+..++    ..+++|+.|+++++. +.. +|+++
T Consensus       227 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-lp~~l  259 (330)
T 1xku_A          227 SISAVDNGSLANTPHLRELHLNNNK-LVK-VPGGL  259 (330)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSC-CSS-CCTTT
T ss_pred             cCceeChhhccCCCCCCEEECCCCc-Ccc-CChhh
Confidence            566555    556788888888875 443 55544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.50  E-value=5e-13  Score=99.04  Aligned_cols=115  Identities=20%  Similarity=0.244  Sum_probs=72.2

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEIH  107 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l~  107 (189)
                      +++++|++++|+++.++  .+..+++|+.|++++|......|..+.++++|+.|++++ +.+..+|.. +..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEE
Confidence            45777777777777765  566777777777777443333355677777777777777 355556543 46677777777


Q ss_pred             ccCccCCCC-ChhchhccCCC-----CCCCCCccc-cccCcccccc
Q 037904          108 LEGTAIRGL-PASIELLFGNA-----APNLKNVPE-TLGNVESLEV  146 (189)
Q Consensus       108 l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~  146 (189)
                      +++|.+..+ |..+..++.|+     .|.++.++. .+..+++|+.
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence            777777665 33455555554     555665554 3555555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.50  E-value=3e-13  Score=110.56  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=79.3

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|++|++++|.++++|.+..+++|++|++++| .++.+|  ++.+++|++|++++| .+..+|  ++.+++|++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred             hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence            4556677777777777776666666777777777764 355554  666677777777764 344453  5666677777


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc--ccCCcCccccC-cccccccceeccCC
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV--RLSCHKRAKMQ-NDFDCVEQIAKKDS  171 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~--l~~~~~l~~~~-~~l~~L~~L~l~~~  171 (189)
                      ++++|.+..+|  ++.++.|+     .+.++.++  ++.+++|+.  +.+|..++.++ ..+++|+.|+++++
T Consensus       112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred             ECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence            77777666654  45555554     45555543  444555555  44443444444 44444555554444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=3.7e-14  Score=111.92  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=62.6

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEEE
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEIH  107 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l~  107 (189)
                      +|++|++++|+++++|  .+.++++|++|++++| .++.+ |..+.++++|++|++++| .+..+|.. ++.+++|++|+
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence            5666666666666654  4666666666666664 33333 344666666666666663 44445543 55666666666


Q ss_pred             ccCccCCCCCh--hchhccCCC-----CC-CCCCcc-ccccCcccccc
Q 037904          108 LEGTAIRGLPA--SIELLFGNA-----AP-NLKNVP-ETLGNVESLEV  146 (189)
Q Consensus       108 l~~~~~~~lp~--~~~~L~~L~-----~~-~l~~lp-~~~~~l~~L~~  146 (189)
                      +++|.+..+|.  .+..+++|+     .+ .+..++ ..+..+++|+.
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            66666666554  445555555     22 344443 23444555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.50  E-value=5.5e-13  Score=104.70  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=27.7

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccC
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSG   86 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~   86 (189)
                      +..+++|++|++++|.+++++.+..+++|++|++++| .++.++ .+.++++|++|++++
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNE  119 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTT
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcC
Confidence            3445555555555555555443444455555555543 333333 244444444444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=108.78  Aligned_cols=145  Identities=19%  Similarity=0.205  Sum_probs=117.2

Q ss_pred             hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCcc--ccCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPE--KTSSR  100 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~l  100 (189)
                      .+.++++|++|++++|.+++++  .+.++++|++|++++| .++.+|.. +.++++|++|++++| .+..+|.  .+..+
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l  148 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHL  148 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTC
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccC
Confidence            4678899999999999999885  7999999999999995 56777765 789999999999994 6777876  68889


Q ss_pred             CCCcEEEccCc-cCCCCC-hhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----ccccccccee
Q 037904          101 DELLEIHLEGT-AIRGLP-ASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIA  167 (189)
Q Consensus       101 ~~L~~l~l~~~-~~~~lp-~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~  167 (189)
                      ++|++|++++| .+..++ ..+..++.|+     .+.+..+ |..+..+++|+. ....+.++.+|    ..+++|+.|+
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred             CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence            99999999998 466664 4566666665     6677766 667889999999 44446677777    4578999999


Q ss_pred             ccCCc
Q 037904          168 KKDSD  172 (189)
Q Consensus       168 l~~~~  172 (189)
                      ++++.
T Consensus       229 L~~n~  233 (353)
T 2z80_A          229 LRDTD  233 (353)
T ss_dssp             EESCB
T ss_pred             CCCCc
Confidence            99886

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.50  E-value=1.7e-13  Score=115.04  Aligned_cols=114  Identities=20%  Similarity=0.153  Sum_probs=51.0

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      .+++|++++|++++++  .+.++++|++|++++|. +..+ |..+.++++|++|++++|......|..++.+++|++|++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            4455555555554443  44455555555555432 2222 334445555555555543222222444455555555555


Q ss_pred             cCccCCCCC-hhchhccCCC-----CCCCC--CccccccCcccccc
Q 037904          109 EGTAIRGLP-ASIELLFGNA-----APNLK--NVPETLGNVESLEV  146 (189)
Q Consensus       109 ~~~~~~~lp-~~~~~L~~L~-----~~~l~--~lp~~~~~l~~L~~  146 (189)
                      ++|.+..++ ..++.+++|+     .+.+.  .+|..++++++|+.
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  157 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH  157 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence            555444433 3344444444     33333  23444444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=9.7e-14  Score=115.57  Aligned_cols=148  Identities=14%  Similarity=0.097  Sum_probs=111.3

Q ss_pred             hhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEKTSSRDE  102 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~  102 (189)
                      ..+..+++|++|++++|.+..+| .+..+++|+.|++++|......| ..+.++++|+.|++++|......|..+..+++
T Consensus       367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  446 (570)
T 2z63_A          367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  446 (570)
T ss_dssp             HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence            44566778888888888887777 77788888888888855433333 35778888999999887655556777888889


Q ss_pred             CcEEEccCccCC--CCChhchhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceecc
Q 037904          103 LLEIHLEGTAIR--GLPASIELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKK  169 (189)
Q Consensus       103 L~~l~l~~~~~~--~lp~~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~  169 (189)
                      |+.|++++|.+.  .+|..+..++.|+     .+.++.+ |.++..+++|+. ....+.+..++    ..+++|+.|+++
T Consensus       447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence            999999998876  4787777777777     6677776 667888888988 44445677666    567888999998


Q ss_pred             CCc
Q 037904          170 DSD  172 (189)
Q Consensus       170 ~~~  172 (189)
                      ++.
T Consensus       527 ~N~  529 (570)
T 2z63_A          527 TNP  529 (570)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.49  E-value=1.9e-13  Score=109.14  Aligned_cols=114  Identities=16%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccC-ccccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREF-PEKTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~l  106 (189)
                      .+++.++++++.++.+|  .+..+++|++|++++|. +..++ ..+.++++|++|++++|. +..+ |..++.+++|++|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEE
Confidence            44555555555555554  23445555555555432 33332 244455555555555532 2222 2334455555555


Q ss_pred             EccCccCCCCChh-chhccCCC-----CCCCCCccc-cccCcccccc
Q 037904          107 HLEGTAIRGLPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV  146 (189)
Q Consensus       107 ~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~  146 (189)
                      ++++|.+..+|.. +..+++|+     .+.++.++. .+..+++|+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  169 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  169 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE
Confidence            5555555544443 24444443     344444432 3444444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.49  E-value=5.9e-13  Score=104.18  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=48.5

Q ss_pred             hhhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDE  102 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  102 (189)
                      .+.++++|++|++++|.++.+ | .+.++++|++|++++| .+..+|..+.  ++|++|++++| .+..+|. .+..+++
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~  148 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRN  148 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSS
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCcc
Confidence            456677777777777777766 4 6677777777777763 4555554443  45555555553 3333332 3444555


Q ss_pred             CcEEEccCccC
Q 037904          103 LLEIHLEGTAI  113 (189)
Q Consensus       103 L~~l~l~~~~~  113 (189)
                      |+.|++++|.+
T Consensus       149 L~~L~l~~n~l  159 (332)
T 2ft3_A          149 MNCIEMGGNPL  159 (332)
T ss_dssp             CCEEECCSCCC
T ss_pred             CCEEECCCCcc
Confidence            55555554444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.48  E-value=4.4e-13  Score=113.10  Aligned_cols=140  Identities=14%  Similarity=0.183  Sum_probs=106.0

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|+.|++++|.++.++.+..+++|+.|++++| .+..+| .+..+++|+.|++++| .+..++ .+..+++|+.|
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L  136 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESL  136 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEE
T ss_pred             HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEE
Confidence            5677888888888888887766777888888888885 456665 5778888888888885 455554 57778888888


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      ++++|.+..+ ..+..++.|+     .+.+..++. +..+++|+. ....+.+..++  ..+++|+.|+++++.
T Consensus       137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred             ECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence            8888888777 4566666666     677777766 888888888 44446677777  778888888888865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.48  E-value=9e-14  Score=108.11  Aligned_cols=147  Identities=12%  Similarity=0.045  Sum_probs=87.5

Q ss_pred             hcCCCCcEEEccCCCccCCC-CccCC-----CCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCcc--Ccccc-
Q 037904           28 EEADTLWEVLSDGTDIKEPL-SIELL-----FGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFRE--FPEKT-   97 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p-~~~~l-----~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~--lp~~~-   97 (189)
                      ..+++|++|++++|++++.| .+..+     ++|++|++++|. +..++ ..++++++|+.|++++|.....  +|..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            55667777777777776666 55554     677777777744 34443 5667777777777777543332  23333 


Q ss_pred             -CCCCCCcEEEccCccCCCCCh---h-chhccCCC-----CCCCCCcc--ccccCcccccc-ccCCcCccccC-cccccc
Q 037904           98 -SSRDELLEIHLEGTAIRGLPA---S-IELLFGNA-----APNLKNVP--ETLGNVESLEV-RLSCHKRAKMQ-NDFDCV  163 (189)
Q Consensus        98 -~~l~~L~~l~l~~~~~~~lp~---~-~~~L~~L~-----~~~l~~lp--~~~~~l~~L~~-l~~~~~l~~~~-~~l~~L  163 (189)
                       +.+++|+.|++++|.+..++.   . +..++.|+     .+.++..+  ..+..+++|+. ....+.++.+| ...++|
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L  276 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL  276 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEE
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCc
Confidence             666777777777777764332   2 23334444     56666544  23555667777 44445666777 223577


Q ss_pred             cceeccCCcchhh
Q 037904          164 EQIAKKDSDSWKK  176 (189)
Q Consensus       164 ~~L~l~~~~~l~~  176 (189)
                      ++|+++++. +.+
T Consensus       277 ~~L~Ls~N~-l~~  288 (312)
T 1wwl_A          277 SVLDLSYNR-LDR  288 (312)
T ss_dssp             EEEECCSSC-CCS
T ss_pred             eEEECCCCC-CCC
Confidence            777777764 444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.48  E-value=2.4e-13  Score=98.95  Aligned_cols=127  Identities=14%  Similarity=0.069  Sum_probs=102.9

Q ss_pred             hhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904           26 LWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLE  105 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  105 (189)
                      .+..+++|++|++++|.++.++.+..+++|++|++++|......+..+..+++|+.|++++|......|..++.+++|+.
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  140 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS  140 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred             HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence            36788999999999998877777888999999999996554457788999999999999996544457788999999999


Q ss_pred             EEccCcc-CCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCcc
Q 037904          106 IHLEGTA-IRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRA  154 (189)
Q Consensus       106 l~l~~~~-~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~  154 (189)
                      |++++|. +..+| .+..++.|+     .+.++.++ .+..+++|+. ....+.++
T Consensus       141 L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          141 IDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             EECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             EEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            9999998 88887 577888777     77888887 6888888988 44445544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.48  E-value=7.1e-13  Score=107.61  Aligned_cols=103  Identities=12%  Similarity=0.100  Sum_probs=61.8

Q ss_pred             cccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCC-ChhchhccCCC-----CCCCCCc-cccccCcc
Q 037904           70 PRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNV-PETLGNVE  142 (189)
Q Consensus        70 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~l-p~~~~~l~  142 (189)
                      |..+.++++|+.|++++|......|..++.+++|+.|++++|.+..+ |..++.++.|+     .+.++.+ |.++..++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            44455666666666666433333345566666667777766666655 34455555555     5566665 44667777


Q ss_pred             cccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          143 SLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       143 ~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      +|+. ....+.++.+|    ..+++|++|+++++.
T Consensus       372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            7777 44445666666    456677777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=1.6e-13  Score=97.25  Aligned_cols=125  Identities=17%  Similarity=0.190  Sum_probs=92.9

Q ss_pred             CCCCcEEEccCCCcc--CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           30 ADTLWEVLSDGTDIK--EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        30 l~~L~~L~l~~~~l~--~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      .+++++|++++|+++  .+| .+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..++.+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            468999999999998  788 78899999999999965 6666 678899999999999965434477777778999999


Q ss_pred             EccCccCCCCChhchhccCCCCCCCCCccccccCcccccc-ccCCcCccccC-------cccccccceeccCCc
Q 037904          107 HLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEV-RLSCHKRAKMQ-------NDFDCVEQIAKKDSD  172 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-------~~l~~L~~L~l~~~~  172 (189)
                      ++++|.+..+|.                +..+..+++|+. ....+.+..+|       ..+++|++|++++|.
T Consensus       101 ~Ls~N~l~~~~~----------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          101 NLSGNKLKDIST----------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             ECBSSSCCSSGG----------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             eccCCccCcchh----------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            999999887652                123455555655 23334444443       346677777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.47  E-value=1.5e-13  Score=108.49  Aligned_cols=88  Identities=16%  Similarity=0.118  Sum_probs=65.3

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l  106 (189)
                      +++++|++++|+++.+|  .|.++++|++|++++|...+.+|. .|.+++++..+...+++.+..++ ..+..+++|+++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            46888999999888887  678888999999988766666664 46778887766555546666664 567778888888


Q ss_pred             EccCccCCCCCh
Q 037904          107 HLEGTAIRGLPA  118 (189)
Q Consensus       107 ~l~~~~~~~lp~  118 (189)
                      ++++|.+..+|.
T Consensus       110 ~l~~n~l~~~~~  121 (350)
T 4ay9_X          110 LISNTGIKHLPD  121 (350)
T ss_dssp             EEEEECCSSCCC
T ss_pred             cccccccccCCc
Confidence            888777765543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.47  E-value=4.2e-13  Score=112.71  Aligned_cols=141  Identities=13%  Similarity=0.039  Sum_probs=75.7

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE  109 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~  109 (189)
                      .+++|++++|.++.++  .+.++++|++|++++|......|..+.++++|++|++++|......|..++.+++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            4566666666666653  56666666666666644333335556666666666666643333345556666666666666


Q ss_pred             CccCCCC-ChhchhccCCC-----CCCCCCcc-ccccCcccccc-ccCCcCccccC----ccccccc--ceeccCCc
Q 037904          110 GTAIRGL-PASIELLFGNA-----APNLKNVP-ETLGNVESLEV-RLSCHKRAKMQ----NDFDCVE--QIAKKDSD  172 (189)
Q Consensus       110 ~~~~~~l-p~~~~~L~~L~-----~~~l~~lp-~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~--~L~l~~~~  172 (189)
                      +|.+..+ +..++.+++|+     .+.+..++ ..+..+++|+. ....+.+..++    +.+++|+  .|+++++.
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            6666654 34455555554     44555442 12333555555 33334444443    3444455  44555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.47  E-value=9.8e-13  Score=102.93  Aligned_cols=94  Identities=22%  Similarity=0.208  Sum_probs=69.7

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      ++++.|++++|.++.++  .+.++++|++|++++|......|..+.++++|++|++++| .+..+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence            46788888888888774  6788888888888885433333667888888888888884 5667776655  67888888


Q ss_pred             cCccCCCCChh-chhccCCC
Q 037904          109 EGTAIRGLPAS-IELLFGNA  127 (189)
Q Consensus       109 ~~~~~~~lp~~-~~~L~~L~  127 (189)
                      ++|.+..+|.. +..+++|+
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCC
T ss_pred             CCCccCccCHhHhCCCccCC
Confidence            88888877653 66666666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.47  E-value=1.1e-12  Score=97.66  Aligned_cols=137  Identities=15%  Similarity=0.128  Sum_probs=108.6

Q ss_pred             CcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccC
Q 037904           33 LWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEG  110 (189)
Q Consensus        33 L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~  110 (189)
                      -+.++.++++++.+| .+.  .+|++|++++|......|..+.++++|+.|++++| .+..+|. .+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence            467888888999998 554  78999999996544444667889999999999995 5677764 468889999999999


Q ss_pred             ccCCCCChh-chhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          111 TAIRGLPAS-IELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       111 ~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      |.+..++.. +..++.|+     .+.++.+|..+..+++|+. ....|.+..++    ..+++|+.|++.+..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            999888664 57777777     7888999988889999998 55557788877    557788999988754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.46  E-value=4.5e-13  Score=111.58  Aligned_cols=124  Identities=21%  Similarity=0.198  Sum_probs=70.6

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH  107 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~  107 (189)
                      .++.|++++|+++.++  .+.++++|++|++++|. +..++ ..+.++++|++|++++|. +..++ ..++.+++|++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccc
Confidence            4666666666666654  56666666666666643 34443 345666666666666643 33333 4566666666666


Q ss_pred             ccCccCCCCCh-hchhccCCC-----CCCCCC--ccccccCcccccc-ccCCcCccccC
Q 037904          108 LEGTAIRGLPA-SIELLFGNA-----APNLKN--VPETLGNVESLEV-RLSCHKRAKMQ  157 (189)
Q Consensus       108 l~~~~~~~lp~-~~~~L~~L~-----~~~l~~--lp~~~~~l~~L~~-l~~~~~l~~~~  157 (189)
                      +++|.+..++. .++.+++|+     .+.+..  +|.+++++++|+. ....+.+..++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            66666665544 355555555     444543  4556666666666 33334444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.46  E-value=6.8e-14  Score=109.02  Aligned_cols=113  Identities=12%  Similarity=-0.012  Sum_probs=50.7

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccc-cCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTI-SALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      +|++|++++|.++.++  .+..+++|++|++++|......+..+ ..+++|+.|++++| .+..+|.. ..+++|+.|++
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~L  198 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDL  198 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEEC
Confidence            3444444444444442  44444555555555432221122222 24455555555552 33333322 22445555555


Q ss_pred             cCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc
Q 037904          109 EGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV  146 (189)
Q Consensus       109 ~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~  146 (189)
                      ++|.+..+|..+..++.|+     .+.++.+|..+..+++|+.
T Consensus       199 s~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~  241 (317)
T 3o53_A          199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH  241 (317)
T ss_dssp             CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             CCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence            5555555544444444444     4455555554555555555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.46  E-value=3.5e-13  Score=111.33  Aligned_cols=145  Identities=12%  Similarity=0.148  Sum_probs=112.1

Q ss_pred             hcCCCCcEEEccCCCccC-CC-CccCCCCCcEEeccCCcCCc--cCcccccCCCCCCEEeccCCCCCccCccc-cCCCCC
Q 037904           28 EEADTLWEVLSDGTDIKE-PL-SIELLFGLVQLTLNGCKNLE--HLPRTISALKYLSTLNLSGLLKFREFPEK-TSSRDE  102 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~-~p-~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~  102 (189)
                      ..+++|++|++++|.+++ .| .+..+++|++|++++|....  .+|..+.++++|+.|++++|.....+|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            567889999999999887 46 88899999999999865332  45567889999999999996443337764 778889


Q ss_pred             CcEEEccCccCC-CCChhc-hhccCCC--CCCCCCccccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          103 LLEIHLEGTAIR-GLPASI-ELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       103 L~~l~l~~~~~~-~lp~~~-~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      |+.|++++|.+. .+|..+ ..|+.|.  .+.++.+|..+..+++|+. ....+.++.+|    ..+++|++|+++++.
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence            999999999885 345555 3444333  7889999998889999999 44456788888    357789999998864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.46  E-value=2.4e-13  Score=105.57  Aligned_cols=145  Identities=12%  Similarity=0.028  Sum_probs=97.2

Q ss_pred             hcCCCCcEEEccCCCccCC----C--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCcc--Cc--ccc
Q 037904           28 EEADTLWEVLSDGTDIKEP----L--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFRE--FP--EKT   97 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~----p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--lp--~~~   97 (189)
                      ..+++|++|++++|.++..    +  .+..+++|++|++++|......+..+.++++|++|++++|.....  ++  ..+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            6677888888888877753    1  334678888888888654333445677888888888888643321  22  233


Q ss_pred             CCCCCCcEEEccCccCCCCChh----chhccCCC-----CCCCCCc-cccccCc---ccccc-ccCCcCccccC-ccccc
Q 037904           98 SSRDELLEIHLEGTAIRGLPAS----IELLFGNA-----APNLKNV-PETLGNV---ESLEV-RLSCHKRAKMQ-NDFDC  162 (189)
Q Consensus        98 ~~l~~L~~l~l~~~~~~~lp~~----~~~L~~L~-----~~~l~~l-p~~~~~l---~~L~~-l~~~~~l~~~~-~~l~~  162 (189)
                      +.+++|++|++++|.++.++..    +..++.|+     .|.+..+ |..+..+   ++|+. ..+.+.++.+| ..+++
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~  273 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAK  273 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSC
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCC
Confidence            5677888888888888765542    34555555     6777766 6656555   57777 44556777777 44577


Q ss_pred             ccceeccCCc
Q 037904          163 VEQIAKKDSD  172 (189)
Q Consensus       163 L~~L~l~~~~  172 (189)
                      |+.|+++++.
T Consensus       274 L~~L~Ls~N~  283 (310)
T 4glp_A          274 LRVLDLSSNR  283 (310)
T ss_dssp             CSCEECCSCC
T ss_pred             CCEEECCCCc
Confidence            8888888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.45  E-value=2e-13  Score=106.08  Aligned_cols=139  Identities=18%  Similarity=0.181  Sum_probs=111.1

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCcc--Ccccc--cCCCCCCEEeccCCCCCccCc----cccCCC
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEH--LPRTI--SALKYLSTLNLSGLLKFREFP----EKTSSR  100 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~--lp~~~--~~l~~L~~L~l~~~~~~~~lp----~~~~~l  100 (189)
                      ++|++|++++|+++.++  .+..+++|++|++++|...+.  +|..+  .++++|++|++++| .+..++    ..+..+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcC
Confidence            89999999999999986  899999999999999765443  34444  78999999999995 565433    234577


Q ss_pred             CCCcEEEccCccCCCCC--hhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccC
Q 037904          101 DELLEIHLEGTAIRGLP--ASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKD  170 (189)
Q Consensus       101 ~~L~~l~l~~~~~~~lp--~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~  170 (189)
                      ++|+.|++++|.+...+  ..+..++.|+     .+.++.+|..+.  ++|+. ....+.++.+|  ..+++|++|++++
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKG  305 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTT
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccC
Confidence            89999999999998754  3445556665     788999998776  78888 55667888888  7789999999988


Q ss_pred             Cc
Q 037904          171 SD  172 (189)
Q Consensus       171 ~~  172 (189)
                      ..
T Consensus       306 N~  307 (312)
T 1wwl_A          306 NP  307 (312)
T ss_dssp             CT
T ss_pred             CC
Confidence            75

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.45  E-value=6.6e-13  Score=105.29  Aligned_cols=139  Identities=16%  Similarity=0.125  Sum_probs=107.9

Q ss_pred             CCCcEEEccCCCccCCC--Ccc-CCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIE-LLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLE  105 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~-~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~  105 (189)
                      ..++.|++++|+++.++  .+. ++.+|+.|++++| .+..++ ..+.++++|+.|++++| .+..++. .+..+++|+.
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCE
Confidence            35889999999999987  566 8999999999995 566665 56889999999999995 5666654 6788999999


Q ss_pred             EEccCccCCCC-ChhchhccCCC-----CCCCCCccccc----cCcccccc-ccCCcCccccC----ccccc--ccceec
Q 037904          106 IHLEGTAIRGL-PASIELLFGNA-----APNLKNVPETL----GNVESLEV-RLSCHKRAKMQ----NDFDC--VEQIAK  168 (189)
Q Consensus       106 l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp~~~----~~l~~L~~-l~~~~~l~~~~----~~l~~--L~~L~l  168 (189)
                      |++++|.+..+ |..+..++.|+     .+.++.+|..+    ..+++|+. ....|.+..+|    ..++.  ++.|++
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence            99999999876 55677777777     78899998754    56888888 55567888888    34444  477888


Q ss_pred             cCC
Q 037904          169 KDS  171 (189)
Q Consensus       169 ~~~  171 (189)
                      .+.
T Consensus       197 ~~N  199 (361)
T 2xot_A          197 HNN  199 (361)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.45  E-value=1.7e-12  Score=101.88  Aligned_cols=87  Identities=16%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|++|++++|.++.+|.+..+++|++|++++| .+..++. +..+++|+.|++++|.....++. +..+++|+++
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEE
Confidence            5667777777777777777666667777777777774 3555554 56666666666666544443332 4444555555


Q ss_pred             EccCccCCCC
Q 037904          107 HLEGTAIRGL  116 (189)
Q Consensus       107 ~l~~~~~~~l  116 (189)
                      +++++.+..+
T Consensus       161 ~l~~~~~~~~  170 (347)
T 4fmz_A          161 TVTESKVKDV  170 (347)
T ss_dssp             ECCSSCCCCC
T ss_pred             EecCCCcCCc
Confidence            5554444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.45  E-value=4.5e-13  Score=112.48  Aligned_cols=125  Identities=21%  Similarity=0.185  Sum_probs=98.4

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l  106 (189)
                      +++++|++++|+++.+|  .|.++++|++|++++| .++.+|+ +|.++++|++|++++| .++.+|. .+..+++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEE
Confidence            36899999999999986  7899999999999985 5666654 6888999999999995 5777764 57889999999


Q ss_pred             EccCccCCCCCh-hchhccCCC-----CCCCCC--ccccccCcccccc-ccCCcCccccC
Q 037904          107 HLEGTAIRGLPA-SIELLFGNA-----APNLKN--VPETLGNVESLEV-RLSCHKRAKMQ  157 (189)
Q Consensus       107 ~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~--lp~~~~~l~~L~~-l~~~~~l~~~~  157 (189)
                      ++++|.+..+|. .++++++|+     .+.++.  +|..+..+++|+. ....+.++.++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            999999988875 477777777     666664  4667788888888 44445666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.45  E-value=1.1e-12  Score=107.10  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=66.8

Q ss_pred             CCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCc
Q 037904           32 TLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGT  111 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~  111 (189)
                      +|++|++++|+++++|.+.++++|++|++++| .++.+|..+   .+|++|++++| .+..+| .++.+++|+.|++++|
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence            34444444444444444444444444444442 233333321   24444444442 333344 3555555666666655


Q ss_pred             cCCCCChhchhccCCC--CCCCCCccccccCcccccc-ccCCcCccccCcccccccceeccCCc
Q 037904          112 AIRGLPASIELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQNDFDCVEQIAKKDSD  172 (189)
Q Consensus       112 ~~~~lp~~~~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~~~l~~L~~L~l~~~~  172 (189)
                      .+..+|.....|+.|.  .+.++.+|. ++.+++|+. ..+.+.+..+|..+++|+.|+++++.
T Consensus       206 ~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          206 SLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY  268 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSC
T ss_pred             cCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCc
Confidence            5555544333333332  455666663 666777776 33345566666555666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.44  E-value=2.2e-12  Score=95.57  Aligned_cols=82  Identities=9%  Similarity=0.113  Sum_probs=36.2

Q ss_pred             CcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904           33 LWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH  107 (189)
Q Consensus        33 L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~  107 (189)
                      +++|++++|+++.++   .+..+++|+.|++++| .++.++. .+.++++|+.|++++| .+..++ ..+..+++|++|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEE
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEE
Confidence            344555555444442   2444455555555442 2333322 3444555555555543 222222 2344444555555


Q ss_pred             ccCccCCCC
Q 037904          108 LEGTAIRGL  116 (189)
Q Consensus       108 l~~~~~~~l  116 (189)
                      +++|.+..+
T Consensus       112 Ls~N~l~~~  120 (220)
T 2v70_A          112 LRSNRITCV  120 (220)
T ss_dssp             CTTSCCCCB
T ss_pred             CCCCcCCeE
Confidence            555544443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.44  E-value=1.2e-12  Score=111.36  Aligned_cols=141  Identities=14%  Similarity=0.122  Sum_probs=102.1

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIH  107 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~  107 (189)
                      +++++|++++|+++.+|  .+.++++|++|++++|......|..+.++++|+.|++++| .+..+|. .++.+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence            57888888888888886  6888888888888886544444566788888888888884 5666765 578888888888


Q ss_pred             ccCccCCCCC-hhchhccCCC-----CCCCCCcc-ccccCcccccc-ccCCcCccccC-c-----ccccccceeccCCc
Q 037904          108 LEGTAIRGLP-ASIELLFGNA-----APNLKNVP-ETLGNVESLEV-RLSCHKRAKMQ-N-----DFDCVEQIAKKDSD  172 (189)
Q Consensus       108 l~~~~~~~lp-~~~~~L~~L~-----~~~l~~lp-~~~~~l~~L~~-l~~~~~l~~~~-~-----~l~~L~~L~l~~~~  172 (189)
                      +++|.+..++ ..++.+++|+     .+.+..++ ..+..+++|+. ....+.++.++ .     .+++|+.|+++++.
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            8888887775 4577777776     55666554 45777888888 44445566555 1     34678888888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.44  E-value=5.1e-13  Score=110.88  Aligned_cols=96  Identities=14%  Similarity=0.032  Sum_probs=50.2

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH  107 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~  107 (189)
                      +.+++|++++|++++++  .+.++++|++|++++|......|..+.++++|++|++++| .+..++ ..++.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence            35566666666655552  5556666666666654322222344555666666666653 333333 2355556666666


Q ss_pred             ccCccCCC--CChhchhccCCC
Q 037904          108 LEGTAIRG--LPASIELLFGNA  127 (189)
Q Consensus       108 l~~~~~~~--lp~~~~~L~~L~  127 (189)
                      +++|.+..  .|..++.++.|+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCC
T ss_pred             CCCCcccccchhhhhhccCCcc
Confidence            66665553  234455555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.43  E-value=1.2e-12  Score=110.49  Aligned_cols=140  Identities=18%  Similarity=0.285  Sum_probs=117.5

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      ...++.|+.|++++|.+..+|.+..+++|+.|++++| .+..++. +..+++|+.|++++| .+..+| .+..+++|+.|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence            4567899999999999999888889999999999995 5677776 889999999999995 566666 68899999999


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      ++++|.+..++ .+..++.|+     .+.+..+ ..+..+++|+. ....+.+..++  ..+++|+.|++++|.
T Consensus       115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          115 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             EecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCC
Confidence            99999998874 477777777     7788888 46889999999 44445666665  788999999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.43  E-value=2.7e-12  Score=104.24  Aligned_cols=82  Identities=17%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             ccccCCCCCCcEEEccCccCCCC-ChhchhccCCC-----CCCCCCcc-ccccCcccccc-ccCCcCcccc-C---cccc
Q 037904           94 PEKTSSRDELLEIHLEGTAIRGL-PASIELLFGNA-----APNLKNVP-ETLGNVESLEV-RLSCHKRAKM-Q---NDFD  161 (189)
Q Consensus        94 p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~L~~L~-----~~~l~~lp-~~~~~l~~L~~-l~~~~~l~~~-~---~~l~  161 (189)
                      |..++.+++|+.|++++|.+..+ |..+..++.|+     .+.++.++ ..+..+++|+. ....+.+..+ |   ..++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            33455556666666666666554 33455555555     55566553 35667777777 3333455555 3   5567


Q ss_pred             cccceeccCCcchhh
Q 037904          162 CVEQIAKKDSDSWKK  176 (189)
Q Consensus       162 ~L~~L~l~~~~~l~~  176 (189)
                      +|++|+++++. +.+
T Consensus       372 ~L~~L~L~~N~-l~~  385 (455)
T 3v47_A          372 NLKELALDTNQ-LKS  385 (455)
T ss_dssp             TCCEEECCSSC-CSC
T ss_pred             cccEEECCCCc-ccc
Confidence            77777777764 444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.42  E-value=2e-12  Score=95.77  Aligned_cols=135  Identities=19%  Similarity=0.249  Sum_probs=95.9

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCc
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGT  111 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~  111 (189)
                      +.++.++++++.+| .+.  ..++.|++++| .+..++. .+.++++|+.|++++|......|..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            56778888888887 554  57888888884 4555554 6778888888888885433334677888888888888888


Q ss_pred             cCCCCChh-chhccCCC-----CCCCCCcc-ccccCcccccc-ccCCcCccccC----cccccccceeccCC
Q 037904          112 AIRGLPAS-IELLFGNA-----APNLKNVP-ETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDS  171 (189)
Q Consensus       112 ~~~~lp~~-~~~L~~L~-----~~~l~~lp-~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~  171 (189)
                      .+..+|.. +..++.|+     .+.++.++ ..+..+++|+. ....+.++.++    ..+++|+.|++++.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            88887765 46666666     67777774 36777888888 44556677666    45677888888774

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.42  E-value=6.6e-13  Score=103.06  Aligned_cols=83  Identities=13%  Similarity=-0.038  Sum_probs=37.4

Q ss_pred             CCCcEEEccCCCccCC-C-Cc--cCCCCCcEEeccCCcCCccCc----ccccCCCCCCEEeccCCCCCccCccccCCCCC
Q 037904           31 DTLWEVLSDGTDIKEP-L-SI--ELLFGLVQLTLNGCKNLEHLP----RTISALKYLSTLNLSGLLKFREFPEKTSSRDE  102 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~-p-~~--~~l~~L~~L~l~~~~~l~~lp----~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~  102 (189)
                      ++|++|++++|.+.+. | .+  ..+++|++|++++|......+    ..+..+++|++|++++|......|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            3455555555555433 2 33  445555555555533222222    12234555555555553322222344455555


Q ss_pred             CcEEEccCccC
Q 037904          103 LLEIHLEGTAI  113 (189)
Q Consensus       103 L~~l~l~~~~~  113 (189)
                      |++|++++|.+
T Consensus       171 L~~L~Ls~N~l  181 (310)
T 4glp_A          171 LTSLDLSDNPG  181 (310)
T ss_dssp             CCEEECCSCTT
T ss_pred             CCEEECCCCCC
Confidence            55555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.42  E-value=2.2e-12  Score=109.75  Aligned_cols=43  Identities=19%  Similarity=0.331  Sum_probs=17.8

Q ss_pred             cccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEccCccC
Q 037904           70 PRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLEGTAI  113 (189)
Q Consensus        70 p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~  113 (189)
                      |..+.++++|+.|++++| .+..+| ..+..+++|+.|++++|.+
T Consensus       473 p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l  516 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNL  516 (680)
T ss_dssp             SCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCc
Confidence            334444444444444442 222222 2234444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.42  E-value=3.3e-12  Score=104.37  Aligned_cols=42  Identities=12%  Similarity=0.253  Sum_probs=19.6

Q ss_pred             CCCCCccccccCcccccc--ccCCcCcccc-C-cccccccceeccCCc
Q 037904          129 PNLKNVPETLGNVESLEV--RLSCHKRAKM-Q-NDFDCVEQIAKKDSD  172 (189)
Q Consensus       129 ~~l~~lp~~~~~l~~L~~--l~~~~~l~~~-~-~~l~~L~~L~l~~~~  172 (189)
                      +.+..++ .+..+++|+.  +.+| .+..+ | ..+++|+.|+++++.
T Consensus       341 n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          341 NKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQA  386 (466)
T ss_dssp             SCCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEECCCEE
T ss_pred             CccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCCEEeccCCc
Confidence            3444442 3445555555  3332 23332 2 555566666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.42  E-value=1.5e-12  Score=113.70  Aligned_cols=117  Identities=17%  Similarity=0.144  Sum_probs=75.9

Q ss_pred             CCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           30 ADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      .+++++|++++|.++.+ | .+.++++|++|++++|.....+ |..+.++++|++|++++|......|..++.+++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            45677777777777766 3 6777777777777776555555 4566777777777777754333446667777777777


Q ss_pred             EccCccCCC-CChh--chhccCCC-----CCCCCCcc--ccccCcccccc
Q 037904          107 HLEGTAIRG-LPAS--IELLFGNA-----APNLKNVP--ETLGNVESLEV  146 (189)
Q Consensus       107 ~l~~~~~~~-lp~~--~~~L~~L~-----~~~l~~lp--~~~~~l~~L~~  146 (189)
                      ++++|.+.+ +|..  ++.+++|+     .+.+..++  ..++++++|+.
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            777777654 3443  56666666     55555542  34666777666

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.42  E-value=6.9e-12  Score=91.74  Aligned_cols=135  Identities=19%  Similarity=0.258  Sum_probs=108.8

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccC
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEG  110 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~  110 (189)
                      +.++.++++++++| .+  ..++++|++++| .+..++. .+.++++|+.|++++| .+..+|. .+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence            67888889999998 55  358999999995 5666665 4689999999999995 6666765 468899999999999


Q ss_pred             ccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          111 TAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       111 ~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      |.+..+|.. +..++.|+     .+.++.+|.. +..+++|+. ....+.+..++    ..+++|+.|+++++.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            999988764 57777777     7888888874 788999999 44446777777    557899999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.41  E-value=7.8e-13  Score=109.23  Aligned_cols=137  Identities=12%  Similarity=0.004  Sum_probs=94.1

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      +++++|++++|.+++++  .+.++++|++|++++|......|..+.++++|++|++++| .+..+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence            67888888888888875  7888888888888886433333667888888888888884 66678766  7788888888


Q ss_pred             cCccCCC--CChhchhccCCC-----CCCCCCccccccCcccc--cc--ccCCcC--ccccCccccccc----ceeccCC
Q 037904          109 EGTAIRG--LPASIELLFGNA-----APNLKNVPETLGNVESL--EV--RLSCHK--RAKMQNDFDCVE----QIAKKDS  171 (189)
Q Consensus       109 ~~~~~~~--lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L--~~--l~~~~~--l~~~~~~l~~L~----~L~l~~~  171 (189)
                      ++|.+..  +|..++.+++|+     .+.++.  ..+..+++|  +.  +.++..  ....|..+..++    .+++.++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n  175 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN  175 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence            8888875  467777777777     455554  345566666  66  444433  234444444433    3444444


Q ss_pred             c
Q 037904          172 D  172 (189)
Q Consensus       172 ~  172 (189)
                      .
T Consensus       176 ~  176 (520)
T 2z7x_B          176 K  176 (520)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.41  E-value=4.8e-12  Score=103.46  Aligned_cols=137  Identities=14%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCc-------------------ccccCCCCCCEEeccCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLP-------------------RTISALKYLSTLNLSGL   87 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp-------------------~~~~~l~~L~~L~l~~~   87 (189)
                      +..+++|++|++++|.++++| ++.+++|++|++++| .++.+|                   ..++++++|+.|++++|
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN  158 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTC
T ss_pred             cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCC
Confidence            344455555555555555544 444445555555543 233332                   01333444444444443


Q ss_pred             CCCccCccccCCCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC-ccc
Q 037904           88 LKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ-NDF  160 (189)
Q Consensus        88 ~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-~~l  160 (189)
                      ..+..+  .++.+++|+.|++++|.++.+|  +..++.|+     .+.++.++  +..+++|+. ....+.+..+| ..+
T Consensus       159 ~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip~~~l  232 (457)
T 3bz5_A          159 KKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPL  232 (457)
T ss_dssp             SCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred             Cccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccCcccc
Confidence            333333  2444555666666666555554  33444443     34444442  444455555 33334444444 444


Q ss_pred             ccccceeccCC
Q 037904          161 DCVEQIAKKDS  171 (189)
Q Consensus       161 ~~L~~L~l~~~  171 (189)
                      ++|+.|+++++
T Consensus       233 ~~L~~L~l~~N  243 (457)
T 3bz5_A          233 TQLTYFDCSVN  243 (457)
T ss_dssp             TTCSEEECCSS
T ss_pred             CCCCEEEeeCC
Confidence            55555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.41  E-value=1.9e-12  Score=107.49  Aligned_cols=143  Identities=12%  Similarity=0.077  Sum_probs=112.4

Q ss_pred             EEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCcc
Q 037904           35 EVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTA  112 (189)
Q Consensus        35 ~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~  112 (189)
                      ..+.++++++.+| .+.  +++++|++++|. ++.+ |..+.++++|++|++++|......|..+..+++|++|++++|.
T Consensus         9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             eEECCCCccccccccCC--CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            3567788999999 654  789999999965 5554 5679999999999999964444445789999999999999999


Q ss_pred             CCCCChh-chhccCCC-----CCCCCC--ccccccCcccccc--ccCCcCccccC----cccccccceeccCCcchhhcc
Q 037904          113 IRGLPAS-IELLFGNA-----APNLKN--VPETLGNVESLEV--RLSCHKRAKMQ----NDFDCVEQIAKKDSDSWKKNV  178 (189)
Q Consensus       113 ~~~lp~~-~~~L~~L~-----~~~l~~--lp~~~~~l~~L~~--l~~~~~l~~~~----~~l~~L~~L~l~~~~~l~~~~  178 (189)
                      +..++.. ++.+++|+     .+.++.  +|..+..+++|+.  +.++..++.+|    ..+++|++|+++++. +.+.+
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~  164 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQ  164 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEEC
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccC
Confidence            9988775 88888887     677875  4567899999999  76766577776    667889999998876 44434


Q ss_pred             ccc
Q 037904          179 DEG  181 (189)
Q Consensus       179 ~~~  181 (189)
                      |..
T Consensus       165 ~~~  167 (549)
T 2z81_A          165 SQS  167 (549)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.41  E-value=4.7e-12  Score=103.45  Aligned_cols=143  Identities=15%  Similarity=0.224  Sum_probs=116.7

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|++|++++|.+++++.+..+++|+.|++++| .+..++. +..+++|+.|++++| .+..++. +..+++|+.|
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L  292 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNL  292 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred             ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeE
Confidence            5678899999999999998887788999999999995 4566665 889999999999995 5666665 7889999999


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCcchhh
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~  176 (189)
                      ++++|.+..++. ++.++.|+     .+.+..++. +..+++|+. ....+.+..++  ..+++|+.|++++|. +.+
T Consensus       293 ~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~  367 (466)
T 1o6v_A          293 ELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ-ISD  367 (466)
T ss_dssp             ECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCB
T ss_pred             EcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCc-cCc
Confidence            999999988765 66777776     677887765 788899998 44445677777  788999999999886 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=5.3e-13  Score=109.91  Aligned_cols=146  Identities=13%  Similarity=-0.001  Sum_probs=90.6

Q ss_pred             hhcCCCCcEEEccCCCccCCC-C-----------------ccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL-S-----------------IELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLL   88 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p-~-----------------~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~   88 (189)
                      +..+++|++|++++|.++++| .                 ...+++|+.|++++|......|..++++++|+.|++++|.
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred             cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence            445566666666666554433 1                 1124566777777754333335566777777777777754


Q ss_pred             CCccCccccC-CCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---c
Q 037904           89 KFREFPEKTS-SRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---N  158 (189)
Q Consensus        89 ~~~~lp~~~~-~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---~  158 (189)
                      .....|..+. .+++|+.|++++|.+..+|.. ..++.|+     .+.++.+|..+..+++|+. ....+.+..+|   .
T Consensus       156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~  234 (487)
T 3oja_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR  234 (487)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred             CCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhc
Confidence            3333455554 677777777777777665432 2244444     6777777777777788877 44446677777   4


Q ss_pred             ccccccceeccCCcc
Q 037904          159 DFDCVEQIAKKDSDS  173 (189)
Q Consensus       159 ~l~~L~~L~l~~~~~  173 (189)
                      .+++|+.|+++++.-
T Consensus       235 ~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          235 FSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCTTCCEEECTTCCB
T ss_pred             cCCCCCEEEcCCCCC
Confidence            567788888877653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.40  E-value=1.7e-12  Score=108.33  Aligned_cols=144  Identities=11%  Similarity=0.134  Sum_probs=113.1

Q ss_pred             hcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccC---cccccCCCCCCEEeccCCCCCccCcc-ccCCCC
Q 037904           28 EEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHL---PRTISALKYLSTLNLSGLLKFREFPE-KTSSRD  101 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~  101 (189)
                      ..+++|++|++++|.+++. | .+.++++|++|++++| .++.+   |..+.++++|+.|++++|.....+|. .+..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            5678999999999999884 6 8899999999999995 55654   45688999999999999644343775 477889


Q ss_pred             CCcEEEccCccCCC-CChhc-hhccCCC--CCCCCCccccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          102 ELLEIHLEGTAIRG-LPASI-ELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       102 ~L~~l~l~~~~~~~-lp~~~-~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      +|+.|++++|.+.. +|..+ ..|+.|.  .+.++.+|..+..+++|+. ....+.++.+|    ..+++|+.|+++++.
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence            99999999998853 45555 3444443  7889999998889999999 55557788888    457889999998864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.40  E-value=3.4e-12  Score=94.53  Aligned_cols=135  Identities=13%  Similarity=0.137  Sum_probs=91.6

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC-c-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEcc
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL-P-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLE  109 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l-p-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~  109 (189)
                      +.++++++.++.+| .+.  ..++.|++++| .+..+ + ..+.++++|+.|++++| .+..++ ..+..+++|+.|+++
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence            57788888888877 543  34577888874 45555 3 23677888888888874 455554 367778888888888


Q ss_pred             CccCCCCChh-chhccCCC-----CCCCCCc-cccccCcccccc-ccCCcCccccC----cccccccceeccCCc
Q 037904          110 GTAIRGLPAS-IELLFGNA-----APNLKNV-PETLGNVESLEV-RLSCHKRAKMQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       110 ~~~~~~lp~~-~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~-l~~~~~l~~~~----~~l~~L~~L~l~~~~  172 (189)
                      +|.+..++.. +..++.|+     .+.++.+ |..+..+++|+. ....+.++.++    ..+++|+.|++++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            8888777653 66666666     6777776 446777777877 44446666663    556777778877653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=6.5e-13  Score=92.25  Aligned_cols=86  Identities=17%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             CCCCcEEEccCCCcc--CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           30 ADTLWEVLSDGTDIK--EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        30 l~~L~~L~l~~~~l~--~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      .++++.|++++|.++  .+| .+..+++|++|++++| .+..+ ..+.++++|+.|++++|.....+|..++.+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            357899999999988  677 7788999999999985 56666 668889999999999864333377777778899999


Q ss_pred             EccCccCCCCC
Q 037904          107 HLEGTAIRGLP  117 (189)
Q Consensus       107 ~l~~~~~~~lp  117 (189)
                      ++++|.+..++
T Consensus        94 ~ls~N~i~~~~  104 (149)
T 2je0_A           94 NLSGNKIKDLS  104 (149)
T ss_dssp             ECTTSCCCSHH
T ss_pred             ECCCCcCCChH
Confidence            99998887654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=2.7e-13  Score=116.67  Aligned_cols=108  Identities=21%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             hhhhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDEL  103 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  103 (189)
                      +.+..++.|+.|++++|.+..+| .+..+.+|+.|+|++| .+..+|..++++++|+.|++++| .+..+|..++.+.+|
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQL  295 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTC
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCC
Confidence            34556667777777777777777 6667777777777774 45577777777777777777774 455777777777777


Q ss_pred             cEEEccCccCCCCChhchhccCCC-----CCCCCCc
Q 037904          104 LEIHLEGTAIRGLPASIELLFGNA-----APNLKNV  134 (189)
Q Consensus       104 ~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~l  134 (189)
                      ++|+|++|.+..+|.+++.|++|+     .|.+...
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            777777777777777776666666     5666643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=4.8e-13  Score=115.08  Aligned_cols=112  Identities=19%  Similarity=0.233  Sum_probs=81.9

Q ss_pred             CCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChh
Q 037904           41 TDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPAS  119 (189)
Q Consensus        41 ~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~  119 (189)
                      |.+...| .+..+..|+.|++++| .+..+|..+.++++|+.|++++| .+..+|..++.+++|+.|+|++|.+..+|..
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~  288 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAE  288 (727)
T ss_dssp             -----------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred             cceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence            3444345 6778888888999884 46688887888888999998884 5668888888888889999998888888888


Q ss_pred             chhccCCC-----CCCCCCccccccCcccccc-ccCCcCcc
Q 037904          120 IELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRA  154 (189)
Q Consensus       120 ~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~  154 (189)
                      ++.|+.|+     .|.++.+|.+++.+++|+. ....|.+.
T Consensus       289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            88888877     6788888888888888888 33334444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.38  E-value=8e-13  Score=102.93  Aligned_cols=144  Identities=14%  Similarity=0.053  Sum_probs=97.8

Q ss_pred             hhcCCCCcEEEccCCCccCCC-C-----------------ccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL-S-----------------IELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGL   87 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p-~-----------------~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~   87 (189)
                      +..+++|++|++++|.+++++ .                 ...+++|+.|++++|. +..+ +..+..+++|+.|++++|
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS
T ss_pred             hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC
Confidence            455667777777776655443 1                 1224567777887754 4444 446777888888888885


Q ss_pred             CCCccCcccc-CCCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC---
Q 037904           88 LKFREFPEKT-SSRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ---  157 (189)
Q Consensus        88 ~~~~~lp~~~-~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~---  157 (189)
                      ......+..+ ..+++|++|++++|.+..++... .++.|+     .+.++.+|..+..+++|+. ....+.++.+|   
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~  233 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL  233 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence            4333334444 46778888888888887764432 244444     7888888888888888988 55556788888   


Q ss_pred             cccccccceeccCCc
Q 037904          158 NDFDCVEQIAKKDSD  172 (189)
Q Consensus       158 ~~l~~L~~L~l~~~~  172 (189)
                      ..+++|+.|+++++.
T Consensus       234 ~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          234 RFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CCCTTCCEEECTTCC
T ss_pred             hcCCCCCEEEccCCC
Confidence            567889999998876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.38  E-value=1.8e-12  Score=91.78  Aligned_cols=105  Identities=21%  Similarity=0.142  Sum_probs=85.4

Q ss_pred             CcchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc--cccCC
Q 037904           22 NCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP--EKTSS   99 (189)
Q Consensus        22 ~~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~   99 (189)
                      ..+..+..+++|++|++++|.++.++.+..+++|++|++++|.....+|..+.++++|+.|++++| .+..+|  ..+..
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~  118 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK  118 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred             hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence            344556788999999999999988777888999999999996544447777778999999999995 677776  68899


Q ss_pred             CCCCcEEEccCccCCCCCh----hchhccCCC
Q 037904          100 RDELLEIHLEGTAIRGLPA----SIELLFGNA  127 (189)
Q Consensus       100 l~~L~~l~l~~~~~~~lp~----~~~~L~~L~  127 (189)
                      +++|+.|++++|.+..+|.    .+..++.|+
T Consensus       119 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A          119 LECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            9999999999999988776    444444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.37  E-value=3.5e-12  Score=107.05  Aligned_cols=131  Identities=17%  Similarity=0.151  Sum_probs=102.7

Q ss_pred             hhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCC
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSR  100 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l  100 (189)
                      ..+.++++|++|++++|+++.+|  .|.++++|++|++++| .++.+|. .|.++++|++|++++| .+..+|. .++.+
T Consensus        70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L  147 (635)
T 4g8a_A           70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHL  147 (635)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTC
T ss_pred             HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcC
Confidence            35778999999999999999996  7899999999999995 5777775 5789999999999995 5666764 58999


Q ss_pred             CCCcEEEccCccCCC--CChhchhccCCC-----CCCCCCccc-cccCcccccc-----ccCCcCccccC
Q 037904          101 DELLEIHLEGTAIRG--LPASIELLFGNA-----APNLKNVPE-TLGNVESLEV-----RLSCHKRAKMQ  157 (189)
Q Consensus       101 ~~L~~l~l~~~~~~~--lp~~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-----l~~~~~l~~~~  157 (189)
                      ++|++|++++|.+..  +|..++.++.|+     .+.++.++. .+..+.+++.     ....+.+..++
T Consensus       148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~  217 (635)
T 4g8a_A          148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  217 (635)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred             cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccC
Confidence            999999999999875  467778888887     677877654 4555544432     23334555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=9.9e-13  Score=93.97  Aligned_cols=126  Identities=14%  Similarity=0.127  Sum_probs=88.9

Q ss_pred             hcCCCCcEEEccCCCccCCCCccCCC-CCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcccc-CCCCCCcE
Q 037904           28 EEADTLWEVLSDGTDIKEPLSIELLF-GLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKT-SSRDELLE  105 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p~~~~l~-~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~  105 (189)
                      ..+.+|++|++++|+++.+|.+..+. +|++|++++| .+..+ ..+..+++|+.|++++| .+..+|..+ +.+++|+.
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence            45678999999999999888555554 8999999995 56666 56888999999999995 667777554 88889999


Q ss_pred             EEccCccCCCCChhchhccCCCCCCCCCccccccCcccccc-ccCCcCccccC-------cccccccceeccCCc
Q 037904          106 IHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEV-RLSCHKRAKMQ-------NDFDCVEQIAKKDSD  172 (189)
Q Consensus       106 l~l~~~~~~~lp~~~~~L~~L~~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-------~~l~~L~~L~l~~~~  172 (189)
                      |++++|.+..+|.-                ..+..+++|+. ....+.+..+|       ..+++|+.|+++++.
T Consensus        93 L~L~~N~i~~~~~~----------------~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           93 LILTNNSLVELGDL----------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECCSCCCCCGGGG----------------GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EECCCCcCCcchhh----------------HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999988776550                12444455555 22333444444       345666777766654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.37  E-value=6.7e-13  Score=100.96  Aligned_cols=136  Identities=13%  Similarity=0.179  Sum_probs=113.6

Q ss_pred             CCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904           30 ADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE  109 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~  109 (189)
                      +..+..+++.++.+++++.+..+++|++|++++| .++.++ .+..+++|+.|++++| .+..++. +..+++|+.|+++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence            4467778899999988877788999999999995 678888 6889999999999995 6777877 8999999999999


Q ss_pred             CccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          110 GTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       110 ~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      +|.+..+|....  ..|+     .+.++.++ .+..+++|+. ..+.+.++.++  ..+++|+.|+++++.
T Consensus        94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSC
T ss_pred             CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCc
Confidence            999988765332  4554     78888886 4889999999 55667788888  788999999999975

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.37  E-value=3.9e-12  Score=106.18  Aligned_cols=135  Identities=16%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             CCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccC-ccccCCCCCCcEEEc
Q 037904           32 TLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREF-PEKTSSRDELLEIHL  108 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~l~l  108 (189)
                      ..+.+++++++++.+| .+.  +++++|++++|. +..++ ..+.++++|+.|++++| .+..+ |+.+..+++|++|++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence            3467777777777777 443  677778887744 44444 46777778888888775 34443 566777777888888


Q ss_pred             cCccCCCCChhchhccCCC-----CCCCCCcc--ccccCcccccc-ccCCcCccccC-cccccc--cceeccCCc
Q 037904          109 EGTAIRGLPASIELLFGNA-----APNLKNVP--ETLGNVESLEV-RLSCHKRAKMQ-NDFDCV--EQIAKKDSD  172 (189)
Q Consensus       109 ~~~~~~~lp~~~~~L~~L~-----~~~l~~lp--~~~~~l~~L~~-l~~~~~l~~~~-~~l~~L--~~L~l~~~~  172 (189)
                      ++|.+..+|..  .+++|+     .+.++.+|  ..++++++|+. ..+.+.+.... ..+++|  +.|+++++.
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESS
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccc
Confidence            87777777665  455555     66666654  56777777777 33334555443 445555  777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=1.4e-11  Score=89.47  Aligned_cols=109  Identities=21%  Similarity=0.328  Sum_probs=73.2

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEccCc
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLEGT  111 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~  111 (189)
                      +.+++++++++.+| .+.  .+++.|++++ +.++.+|..+.++++|+.|++++| .+..++ ..+..+++|+.|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence            56777777777777 443  4677777777 456677777777777888887774 444444 45777777778888777


Q ss_pred             cCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc
Q 037904          112 AIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV  146 (189)
Q Consensus       112 ~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~  146 (189)
                      .+..++. .+..++.|+     .|.++.+|. .+..+++|+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH  130 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence            7776654 355555555     556666665 3666777776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.36  E-value=7.5e-12  Score=109.25  Aligned_cols=148  Identities=15%  Similarity=0.034  Sum_probs=111.9

Q ss_pred             hhhhcCCCCcEEEccCC-CccCC-C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccc--cCC
Q 037904           25 RLWEEADTLWEVLSDGT-DIKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEK--TSS   99 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~-~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~   99 (189)
                      ..+.++++|++|++++| .+..+ | .+.++++|++|++++|......|.++.++++|++|++++|.....+|..  ++.
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            45678899999999998 44556 5 8999999999999997655555888999999999999997554445654  889


Q ss_pred             CCCCcEEEccCccCCCC--ChhchhccCCC-----CCCCCCc-cccccCc--ccccc--ccCCcCccccC---cccc---
Q 037904          100 RDELLEIHLEGTAIRGL--PASIELLFGNA-----APNLKNV-PETLGNV--ESLEV--RLSCHKRAKMQ---NDFD---  161 (189)
Q Consensus       100 l~~L~~l~l~~~~~~~l--p~~~~~L~~L~-----~~~l~~l-p~~~~~l--~~L~~--l~~~~~l~~~~---~~l~---  161 (189)
                      +++|++|++++|.+..+  +..++.+++|+     .+.+..+ |..+..+  ++|+.  +.++......|   +.+.   
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence            99999999999999875  35688888888     6666654 4466666  67777  55544444444   2233   


Q ss_pred             ---cccceeccCCc
Q 037904          162 ---CVEQIAKKDSD  172 (189)
Q Consensus       162 ---~L~~L~l~~~~  172 (189)
                         .|+.|+++++.
T Consensus       202 ~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          202 RNMVLEILDVSGNG  215 (844)
T ss_dssp             TTCCBSEEBCSSCC
T ss_pred             ccCceeEEecCCCc
Confidence               38999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=2.8e-13  Score=105.88  Aligned_cols=145  Identities=17%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             hhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCcc--CcccccCCCCCCEEeccCCCCCcc--CccccCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEH--LPRTISALKYLSTLNLSGLLKFRE--FPEKTSSR  100 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l  100 (189)
                      +..+++|++|++++|.+++. + .++.+++|++|++++|..++.  ++..+.++++|+.|++++|..+..  ++..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            33444555555555444422 2 444455555555555433331  333344455555555555423322  33344444


Q ss_pred             C-CCcEEEccCcc--CC--CCChhchhccCCC-----CCC-CC-CccccccCcccccc--ccCCcCccccC----ccccc
Q 037904          101 D-ELLEIHLEGTA--IR--GLPASIELLFGNA-----APN-LK-NVPETLGNVESLEV--RLSCHKRAKMQ----NDFDC  162 (189)
Q Consensus       101 ~-~L~~l~l~~~~--~~--~lp~~~~~L~~L~-----~~~-l~-~lp~~~~~l~~L~~--l~~~~~l~~~~----~~l~~  162 (189)
                      + +|++|++++|.  +.  .+|..+..+++|+     .+. ++ ..+..+..+++|+.  +.+|..+....    ..+++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            4 55555555542  21  2333333444444     222 22 23334555555555  44443332211    34555


Q ss_pred             ccceeccCC
Q 037904          163 VEQIAKKDS  171 (189)
Q Consensus       163 L~~L~l~~~  171 (189)
                      |+.|++++|
T Consensus       274 L~~L~l~~~  282 (336)
T 2ast_B          274 LKTLQVFGI  282 (336)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeccCc
Confidence            555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.35  E-value=6.1e-12  Score=105.39  Aligned_cols=129  Identities=18%  Similarity=0.137  Sum_probs=65.3

Q ss_pred             CCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904           31 DTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG  110 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~  110 (189)
                      ++|+.|++++|+++.+|  ..+++|+.|++++| .++.+|. +.+  +|+.|++++| .++.+|.   .+++|+.|++++
T Consensus        80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           80 PQITVLEITQNALISLP--ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN  149 (571)
T ss_dssp             TTCSEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCcccc--cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC
Confidence            45777777777766666  34556666666663 3444555 433  5555555552 3444444   334444444444


Q ss_pred             ccCCCCChhchhc-----------------cCCC-----CCCCCCccccccCcccc-------cc-ccCCcCccccC---
Q 037904          111 TAIRGLPASIELL-----------------FGNA-----APNLKNVPETLGNVESL-------EV-RLSCHKRAKMQ---  157 (189)
Q Consensus       111 ~~~~~lp~~~~~L-----------------~~L~-----~~~l~~lp~~~~~l~~L-------~~-l~~~~~l~~~~---  157 (189)
                      |.+..+|..+..|                 ++|+     .|.++.+|. +..  +|       +. ....|.++.+|   
T Consensus       150 N~l~~lp~~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l  226 (571)
T 3cvr_A          150 NQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENI  226 (571)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred             CccCcCCCcCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence            4444444322222                 2232     455555555 332  44       55 33445566666   


Q ss_pred             cccccccceeccCCc
Q 037904          158 NDFDCVEQIAKKDSD  172 (189)
Q Consensus       158 ~~l~~L~~L~l~~~~  172 (189)
                      ..+++|+.|+++++.
T Consensus       227 ~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          227 LSLDPTCTIILEDNP  241 (571)
T ss_dssp             GGSCTTEEEECCSSS
T ss_pred             hcCCCCCEEEeeCCc
Confidence            345666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=9.7e-13  Score=108.37  Aligned_cols=139  Identities=13%  Similarity=0.022  Sum_probs=112.0

Q ss_pred             cCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccCccccc-CCCCCCEEeccCCCCCccCccccCCCCCCcE
Q 037904           29 EADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHLPRTIS-ALKYLSTLNLSGLLKFREFPEKTSSRDELLE  105 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  105 (189)
                      .+++|+.|++++|.++.+ | .+..+++|++|++++|......|..+. .+++|+.|++++| .+..+|. ...+++|+.
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~  195 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKT  195 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCE
T ss_pred             ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCE
Confidence            467899999999999988 4 888999999999999765555666675 7999999999995 5666654 345889999


Q ss_pred             EEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCcc--ccC---cccccccceecc
Q 037904          106 IHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRA--KMQ---NDFDCVEQIAKK  169 (189)
Q Consensus       106 l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~--~~~---~~l~~L~~L~l~  169 (189)
                      |++++|.+..+|+.+..++.|+     .|.+..+|..+..+++|+. ....+.+.  .+|   ..++.|+.+++.
T Consensus       196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9999999999998888888887     7889999999999999998 33334454  454   566777777775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=5.1e-12  Score=105.88  Aligned_cols=116  Identities=18%  Similarity=0.202  Sum_probs=60.9

Q ss_pred             CcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCcc
Q 037904           33 LWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTA  112 (189)
Q Consensus        33 L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~  112 (189)
                      |+.|++++|+++.+|.+..+++|+.|++++| .++.+|..++++++|+.|++++ +.++.+| .++.+++|+.|++++|.
T Consensus       443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             CSEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             ceEEEecCCCCCCCcCccccccCcEeecCcc-cccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCCC
Confidence            4555555555555554555555555555552 3445555555555555555555 2344455 45555555555555555


Q ss_pred             CCCCChhchhccCCCCCCCCCccccccCcccccc-ccCCcCccccC-------ccccccccee
Q 037904          113 IRGLPASIELLFGNAAPNLKNVPETLGNVESLEV-RLSCHKRAKMQ-------NDFDCVEQIA  167 (189)
Q Consensus       113 ~~~lp~~~~~L~~L~~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~-------~~l~~L~~L~  167 (189)
                      +..++                .|..++.+++|+. ....|.+..+|       ..+++|+.|+
T Consensus       520 l~~~~----------------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          520 LQQSA----------------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCSSS----------------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCC----------------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            54431                0455666666666 33334455544       2255666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=1.6e-11  Score=88.98  Aligned_cols=110  Identities=21%  Similarity=0.209  Sum_probs=71.1

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCccc--ccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRT--ISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG  110 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~  110 (189)
                      +.+++++++++++| .+..  ++++|++++| .++.++..  +.++++|+.|++++|......|..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56777777777777 4443  6777777774 45555542  66777777777777433333356677777777777777


Q ss_pred             ccCCCCCh-hchhccCCC-----CCCCCCc-cccccCcccccc
Q 037904          111 TAIRGLPA-SIELLFGNA-----APNLKNV-PETLGNVESLEV  146 (189)
Q Consensus       111 ~~~~~lp~-~~~~L~~L~-----~~~l~~l-p~~~~~l~~L~~  146 (189)
                      |.+..++. .+..++.|+     .+.++.+ |..+..+++|+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            77776544 355555555     5556555 446777777777

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.32  E-value=1.8e-11  Score=99.97  Aligned_cols=131  Identities=19%  Similarity=0.189  Sum_probs=66.2

Q ss_pred             CCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904           31 DTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE  109 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~  109 (189)
                      ++|++|++++|.++++| .   ..+|+.|++++| .+..+|..   .++|++|++++| .+..+| .++.+++|++|+++
T Consensus        91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVD  161 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECC
T ss_pred             CCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECC
Confidence            45666666666666655 2   244555555553 33333321   145666666653 344455 35566666666666


Q ss_pred             CccCCCCChhchhccCCC--CCCCCCccccccCcccccc-ccCCcCccccCcccccccceeccCC
Q 037904          110 GTAIRGLPASIELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQNDFDCVEQIAKKDS  171 (189)
Q Consensus       110 ~~~~~~lp~~~~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~~~l~~L~~L~l~~~  171 (189)
                      +|.+..+|..+..|+.|.  .+.++.+| +++.+++|+. ..+.+.+..+|..+++|++|+++++
T Consensus       162 ~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n  225 (454)
T 1jl5_A          162 NNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN  225 (454)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred             CCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence            666655555444444333  45555555 3555555555 2233344444433344444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.31  E-value=1.8e-11  Score=102.59  Aligned_cols=128  Identities=17%  Similarity=0.183  Sum_probs=96.6

Q ss_pred             CCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904           32 TLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG  110 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~  110 (189)
                      +++.|++++|+++++| .+.  ++|+.|++++| .++.+|   ..+++|+.|++++| .+..+|. +..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            8999999999999999 563  78999999995 577888   45899999999995 6777888 665  899999999


Q ss_pred             ccCCCCChhchhccCCC--CCCCCCccccccCcccccc-ccCCcCccccCcccccccceeccCCc
Q 037904          111 TAIRGLPASIELLFGNA--APNLKNVPETLGNVESLEV-RLSCHKRAKMQNDFDCVEQIAKKDSD  172 (189)
Q Consensus       111 ~~~~~lp~~~~~L~~L~--~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~~~l~~L~~L~l~~~~  172 (189)
                      |.+..+|..+..|+.|.  .|.++.+|.   .+++|+. ..+.|.+..+|...++|+.|+++++.
T Consensus       130 N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~  191 (571)
T 3cvr_A          130 NQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNL  191 (571)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCC
Confidence            99999988333333333  777877776   4566666 44445566666422567777777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.31  E-value=5.4e-12  Score=87.54  Aligned_cols=104  Identities=20%  Similarity=0.173  Sum_probs=84.7

Q ss_pred             CcchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc--cccCC
Q 037904           22 NCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP--EKTSS   99 (189)
Q Consensus        22 ~~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~   99 (189)
                      ..+..+..+++|++|++++|.++.++.+..+++|++|++++|.....+|..+.++++|+.|++++| .+..+|  ..++.
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~  111 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKK  111 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGG
T ss_pred             HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhh
Confidence            344556788999999999999988877888999999999996544447887778999999999995 566655  78899


Q ss_pred             CCCCcEEEccCccCCCCCh----hchhccCC
Q 037904          100 RDELLEIHLEGTAIRGLPA----SIELLFGN  126 (189)
Q Consensus       100 l~~L~~l~l~~~~~~~lp~----~~~~L~~L  126 (189)
                      +++|++|++++|.+..+|.    .+..+++|
T Consensus       112 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A          112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            9999999999999988765    34554444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.30  E-value=5.9e-13  Score=104.02  Aligned_cols=146  Identities=14%  Similarity=0.092  Sum_probs=95.9

Q ss_pred             cCCCCcEEEccCCCccC--CC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCc--cCccccCCCCCC
Q 037904           29 EADTLWEVLSDGTDIKE--PL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFR--EFPEKTSSRDEL  103 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~--~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L  103 (189)
                      .+++|++|++++|.++.  +| .+..+++|+.|++++|......+..+..+++|+.|++++|..++  .++..+..+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            45677777777777654  45 66777778888887765433556667777788888888765555  256566677778


Q ss_pred             cEEEccCc-cCCC--CChhchhcc-CCC-----CC--CC--CCccccccCcccccc--ccCCcCccc-cC---ccccccc
Q 037904          104 LEIHLEGT-AIRG--LPASIELLF-GNA-----AP--NL--KNVPETLGNVESLEV--RLSCHKRAK-MQ---NDFDCVE  164 (189)
Q Consensus       104 ~~l~l~~~-~~~~--lp~~~~~L~-~L~-----~~--~l--~~lp~~~~~l~~L~~--l~~~~~l~~-~~---~~l~~L~  164 (189)
                      ++|++++| .+..  ++..+..++ +|+     .+  .+  ..+|..+..+++|+.  +.+|..+.. .+   ..+++|+
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            88888877 6664  455556666 665     33  23  345555667777777  666654442 22   5667888


Q ss_pred             ceeccCCcch
Q 037904          165 QIAKKDSDSW  174 (189)
Q Consensus       165 ~L~l~~~~~l  174 (189)
                      +|++++|..+
T Consensus       251 ~L~l~~~~~~  260 (336)
T 2ast_B          251 HLSLSRCYDI  260 (336)
T ss_dssp             EEECTTCTTC
T ss_pred             EeeCCCCCCC
Confidence            8888888643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.29  E-value=1.4e-11  Score=97.54  Aligned_cols=115  Identities=18%  Similarity=0.155  Sum_probs=92.4

Q ss_pred             hh-cCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccC-ccccCCCC
Q 037904           27 WE-EADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREF-PEKTSSRD  101 (189)
Q Consensus        27 ~~-~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~  101 (189)
                      +. .+++|+.|++++|+++.++  .+.++++|+.|++++| .+..++. .+.++++|+.|++++|. +..+ |..+..++
T Consensus        59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~  136 (361)
T 2xot_A           59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMA  136 (361)
T ss_dssp             SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred             hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcc
Confidence            44 7889999999999999986  7999999999999995 4666654 68899999999999954 5544 67889999


Q ss_pred             CCcEEEccCccCCCCChhc----hhccCCC-----CCCCCCccc-cccCccc
Q 037904          102 ELLEIHLEGTAIRGLPASI----ELLFGNA-----APNLKNVPE-TLGNVES  143 (189)
Q Consensus       102 ~L~~l~l~~~~~~~lp~~~----~~L~~L~-----~~~l~~lp~-~~~~l~~  143 (189)
                      +|+.|++++|.+..+|..+    ..++.|+     .|.++.+|. .+..++.
T Consensus       137 ~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  188 (361)
T 2xot_A          137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA  188 (361)
T ss_dssp             TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred             cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence            9999999999999998764    4566666     788888885 4555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.29  E-value=2.8e-11  Score=87.84  Aligned_cols=95  Identities=21%  Similarity=0.231  Sum_probs=81.0

Q ss_pred             CCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904           31 DTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH  107 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~  107 (189)
                      +++++|++++|+++.+| .+.++++|+.|++++| .++.++ ..+.++++|+.|++++| .+..++ ..+..+++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence            57999999999999999 9999999999999995 466665 56899999999999995 565555 5789999999999


Q ss_pred             ccCccCCCCChh-chhccCCC
Q 037904          108 LEGTAIRGLPAS-IELLFGNA  127 (189)
Q Consensus       108 l~~~~~~~lp~~-~~~L~~L~  127 (189)
                      +++|.+..+|.. +..++.|+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCCCCCeeChhhhhcCcccc
Confidence            999999998774 67777666

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.27  E-value=3.9e-11  Score=101.48  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=45.0

Q ss_pred             CCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904           31 DTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG  110 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~  110 (189)
                      ++|+.|++++|+++.+|.  .+++|++|++++| .++.+|.   .+++|++|++++| .+..+|.   .+++|+.|++++
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~  130 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG  130 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence            456666666666666652  3456666666663 3555555   4556666666653 4444444   234455555555


Q ss_pred             ccCCCCChhchhc
Q 037904          111 TAIRGLPASIELL  123 (189)
Q Consensus       111 ~~~~~lp~~~~~L  123 (189)
                      |.+..+|..+.+|
T Consensus       131 N~l~~lp~~l~~L  143 (622)
T 3g06_A          131 NQLTSLPVLPPGL  143 (622)
T ss_dssp             SCCSCCCCCCTTC
T ss_pred             CCCCcCCCCCCCC
Confidence            5555554443333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.27  E-value=5.1e-11  Score=100.82  Aligned_cols=86  Identities=23%  Similarity=0.272  Sum_probs=59.3

Q ss_pred             cCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           29 EADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      .+++|++|++++|+++.+|.  .+++|+.|++++| .+..+|.   .+++|+.|++++| .+..+|..   +++|++|++
T Consensus        79 ~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~L  148 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSV  148 (622)
T ss_dssp             CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEEC
T ss_pred             cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEEC
Confidence            46789999999998888873  5678888888874 5666666   4567777777773 56666654   256677777


Q ss_pred             cCccCCCCChhchhcc
Q 037904          109 EGTAIRGLPASIELLF  124 (189)
Q Consensus       109 ~~~~~~~lp~~~~~L~  124 (189)
                      ++|.+..+|..+..|+
T Consensus       149 s~N~l~~l~~~~~~L~  164 (622)
T 3g06_A          149 SDNQLASLPALPSELC  164 (622)
T ss_dssp             CSSCCSCCCCCCTTCC
T ss_pred             cCCcCCCcCCccCCCC
Confidence            7776666655444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.26  E-value=1.9e-11  Score=96.46  Aligned_cols=154  Identities=14%  Similarity=0.151  Sum_probs=97.6

Q ss_pred             hhhhcCCCCcEEEccCCCccC-CC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-----
Q 037904           25 RLWEEADTLWEVLSDGTDIKE-PL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-----   95 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~-~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-----   95 (189)
                      +.+.++++|++|++++|.+.+ +|  .+.++.+++.+...+++.+..++ ..+.++++|++|++++| .+..+|.     
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~  126 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIH  126 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCC
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcc
Confidence            457788899999999998754 45  67788887765444446666664 45678888888888774 3433332     


Q ss_pred             ---------------------ccCCC-CCCcEEEccCccCCCCChhchhccCCC------CCCCCCccc-cccCcccccc
Q 037904           96 ---------------------KTSSR-DELLEIHLEGTAIRGLPASIELLFGNA------APNLKNVPE-TLGNVESLEV  146 (189)
Q Consensus        96 ---------------------~~~~l-~~L~~l~l~~~~~~~lp~~~~~L~~L~------~~~l~~lp~-~~~~l~~L~~  146 (189)
                                           .+..+ ..++.|++++|.++++|........|.      ++.++.+|. .|..+++|+.
T Consensus       127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~  206 (350)
T 4ay9_X          127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI  206 (350)
T ss_dssp             BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred             cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccch
Confidence                                 11122 245566666666666655432222222      567777776 4677777777


Q ss_pred             -ccCCcCccccC-cccccccceeccCCcchhhcccc
Q 037904          147 -RLSCHKRAKMQ-NDFDCVEQIAKKDSDSWKKNVDE  180 (189)
Q Consensus       147 -l~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~  180 (189)
                       ....+.++.+| +.+.+|+.|.+.++..++. +|.
T Consensus       207 LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~-lP~  241 (350)
T 4ay9_X          207 LDISRTRIHSLPSYGLENLKKLRARSTYNLKK-LPT  241 (350)
T ss_dssp             EECTTSCCCCCCSSSCTTCCEEECTTCTTCCC-CCC
T ss_pred             hhcCCCCcCccChhhhccchHhhhccCCCcCc-CCC
Confidence             44556777777 5667777777766666555 553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.24  E-value=1.7e-10  Score=82.17  Aligned_cols=109  Identities=22%  Similarity=0.338  Sum_probs=58.8

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccC
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEG  110 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~  110 (189)
                      +.+++++++++.+| .+.  .+++.|++++| .++.+|. .+.++++|+.|++++| .+..+|. .+..+++|+.|++++
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence            45666666666665 332  45666666663 3444443 3455666666666663 3444443 345566666666666


Q ss_pred             ccCCCCChh-chhccCCC-----CCCCCCcccc-ccCcccccc
Q 037904          111 TAIRGLPAS-IELLFGNA-----APNLKNVPET-LGNVESLEV  146 (189)
Q Consensus       111 ~~~~~lp~~-~~~L~~L~-----~~~l~~lp~~-~~~l~~L~~  146 (189)
                      |.+..+|.. +..++.|+     .+.++.+|.. +..+++|+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  128 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK  128 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence            666555442 34444443     4445555543 456677776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.23  E-value=6.1e-11  Score=84.68  Aligned_cols=99  Identities=16%  Similarity=0.181  Sum_probs=64.7

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEEEccC
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEIHLEG  110 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l~l~~  110 (189)
                      +.+++++++++.+| .+.  .+|++|++++|. +..+ |..+.++++|+.|++++| .+..+|.. +..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            56777777777777 553  677777777743 4444 456677777777777773 56666654 46777777777777


Q ss_pred             ccCCCCChh-chhccCCC-----CCCCCCccc
Q 037904          111 TAIRGLPAS-IELLFGNA-----APNLKNVPE  136 (189)
Q Consensus       111 ~~~~~lp~~-~~~L~~L~-----~~~l~~lp~  136 (189)
                      |.+..+|.. +..++.|+     .|.+...+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            777776654 55555555     455555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.23  E-value=3.4e-11  Score=85.91  Aligned_cols=102  Identities=17%  Similarity=0.108  Sum_probs=83.7

Q ss_pred             chhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccc-cCCCCCCEEeccCCCCCccCcc--ccCCC
Q 037904           24 SRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTI-SALKYLSTLNLSGLLKFREFPE--KTSSR  100 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~--~~~~l  100 (189)
                      +.+....++|++|++++|.+++++.+..+++|++|++++| .+..+|..+ ..+++|+.|++++| .+..+|.  .++.+
T Consensus        35 ~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l  112 (176)
T 1a9n_A           35 ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASL  112 (176)
T ss_dssp             CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGC
T ss_pred             HHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcC
Confidence            3334445599999999999998877889999999999995 577777655 89999999999995 6788887  78899


Q ss_pred             CCCcEEEccCccCCCCChh----chhccCCC
Q 037904          101 DELLEIHLEGTAIRGLPAS----IELLFGNA  127 (189)
Q Consensus       101 ~~L~~l~l~~~~~~~lp~~----~~~L~~L~  127 (189)
                      ++|+.+++++|.+..+|..    +..++.|+
T Consensus       113 ~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~  143 (176)
T 1a9n_A          113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  143 (176)
T ss_dssp             TTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             CCCCEEEecCCCCCCcHhHHHHHHHHCCccc
Confidence            9999999999999888774    55555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.21  E-value=4.7e-11  Score=100.05  Aligned_cols=124  Identities=13%  Similarity=0.153  Sum_probs=92.0

Q ss_pred             CccCCCCCcEEe-ccCCcCCccCcc------cccC--CCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCCh
Q 037904           48 SIELLFGLVQLT-LNGCKNLEHLPR------TISA--LKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPA  118 (189)
Q Consensus        48 ~~~~l~~L~~L~-l~~~~~l~~lp~------~~~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~  118 (189)
                      .++.+.+|+.|+ ++. +.+..++.      .+..  ...|+.|++++| .++.+|. ++.+++|+.|++++|.+..+|.
T Consensus       404 ~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~  480 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPP  480 (567)
T ss_dssp             HHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCG
T ss_pred             HHHHHHhcccCcchhh-cccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccch
Confidence            556677787777 443 22222221      1111  125888999884 6777886 8888889999999998888888


Q ss_pred             hchhccCCC-----CCCCCCccccccCcccccc-ccCCcCcccc--C---cccccccceeccCCcchhh
Q 037904          119 SIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKM--Q---NDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       119 ~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~--~---~~l~~L~~L~l~~~~~l~~  176 (189)
                      .++.+++|+     .|.++.+| +++.+++|+. ..+.|.+..+  |   +.+++|+.|+++++. +.+
T Consensus       481 ~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~  547 (567)
T 1dce_A          481 ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQ  547 (567)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGG
T ss_pred             hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCC
Confidence            888888887     78888888 7999999999 5555778777  6   778999999999987 665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.20  E-value=9.2e-11  Score=84.93  Aligned_cols=95  Identities=20%  Similarity=0.193  Sum_probs=78.2

Q ss_pred             CCcEEEccCCCccCCC-C--ccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904           32 TLWEVLSDGTDIKEPL-S--IELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH  107 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p-~--~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~  107 (189)
                      ++++|++++|+++.++ .  +..+++|++|++++|......|..+.++++|+.|++++| .+..++ ..+..+++|+.|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence            7899999999999987 3  889999999999996544444778999999999999995 555554 5588899999999


Q ss_pred             ccCccCCCC-ChhchhccCCC
Q 037904          108 LEGTAIRGL-PASIELLFGNA  127 (189)
Q Consensus       108 l~~~~~~~l-p~~~~~L~~L~  127 (189)
                      +++|.+..+ |..+..++.|+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCC
T ss_pred             CCCCcCCeeCHHHhhcCCCCC
Confidence            999999875 66677777776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.18  E-value=1.5e-10  Score=82.59  Aligned_cols=91  Identities=20%  Similarity=0.223  Sum_probs=78.0

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l  106 (189)
                      ++|+.|++++|+++.++  .+.++++|++|++++| .++.+|.. +.++++|+.|++++ +.+..+|.. +..+++|+.|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEE
Confidence            68999999999999994  8999999999999995 67888875 57999999999999 567777765 8899999999


Q ss_pred             EccCccCCCCChhchhc
Q 037904          107 HLEGTAIRGLPASIELL  123 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L  123 (189)
                      ++++|.+...+..+..+
T Consensus       111 ~L~~N~~~c~~~~~~~l  127 (174)
T 2r9u_A          111 YLYNNPWDCECRDIMYL  127 (174)
T ss_dssp             ECCSSCBCTTBGGGHHH
T ss_pred             EeCCCCcccccccHHHH
Confidence            99999998776654443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.18  E-value=1.8e-10  Score=82.09  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=82.9

Q ss_pred             CCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcE
Q 037904           30 ADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFPE-KTSSRDELLE  105 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~  105 (189)
                      .+++++|++++|+++.+|  .+..+++|++|++++| .++.+|. .+.++++|+.|++++| .++.+|. .++.+++|+.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence            368999999999999987  5789999999999995 5677765 4689999999999995 5666665 4688999999


Q ss_pred             EEccCccCCCCChh-chhccCCC-----CCCCCCc
Q 037904          106 IHLEGTAIRGLPAS-IELLFGNA-----APNLKNV  134 (189)
Q Consensus       106 l~l~~~~~~~lp~~-~~~L~~L~-----~~~l~~l  134 (189)
                      |++++|.+..+|.. +..++.|+     .|.+..-
T Consensus       105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            99999999988775 46676666     5555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.16  E-value=2.6e-10  Score=81.02  Aligned_cols=90  Identities=18%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcEEEccC
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLEIHLEG  110 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~l~l~~  110 (189)
                      +.+++++++++.+| .+.  .+++.|++++| .+..+ |..+.++++|++|++++| .+..+|.. +..+++|+.|++++
T Consensus        12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence            45666666666665 432  55666666653 33333 344556666666666653 44444432 35566666666666


Q ss_pred             ccCCCCChh-chhccCCC
Q 037904          111 TAIRGLPAS-IELLFGNA  127 (189)
Q Consensus       111 ~~~~~lp~~-~~~L~~L~  127 (189)
                      |.+..+|.. +..++.|+
T Consensus        88 N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCC
T ss_pred             CccCEeCHHHhcCCCCCC
Confidence            666555442 44444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.10  E-value=7.5e-10  Score=78.59  Aligned_cols=86  Identities=20%  Similarity=0.208  Sum_probs=74.0

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCccc-ccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRT-ISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l  106 (189)
                      +++++|++++|+++.++  .+.++++|++|++++| .+..+|.. +.++++|+.|++++| .+..+|. .+..+++|+.|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence            68999999999999995  7999999999999995 57777764 689999999999994 6777775 58899999999


Q ss_pred             EccCccCCCCCh
Q 037904          107 HLEGTAIRGLPA  118 (189)
Q Consensus       107 ~l~~~~~~~lp~  118 (189)
                      ++++|.+...+.
T Consensus       108 ~L~~N~~~c~c~  119 (170)
T 3g39_A          108 WLLNNPWDCACS  119 (170)
T ss_dssp             ECCSSCBCTTBG
T ss_pred             EeCCCCCCCCch
Confidence            999998875544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.06  E-value=2.2e-11  Score=97.13  Aligned_cols=35  Identities=14%  Similarity=0.056  Sum_probs=16.4

Q ss_pred             cCCCCcEEEccCCCccC-----CC-CccCCCCCcEEeccCC
Q 037904           29 EADTLWEVLSDGTDIKE-----PL-SIELLFGLVQLTLNGC   63 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~-----~p-~~~~l~~L~~L~l~~~   63 (189)
                      .+++|++|++++|.++.     +| .+..+++|++|++++|
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            44455555555554444     23 3444444555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.03  E-value=4.1e-11  Score=95.53  Aligned_cols=148  Identities=11%  Similarity=0.094  Sum_probs=109.5

Q ss_pred             chhhhcCCCCcEEEccCCCccCCC------CccCC---------CCCcEEeccCCcCC-ccCc---ccccCCCCCCEEec
Q 037904           24 SRLWEEADTLWEVLSDGTDIKEPL------SIELL---------FGLVQLTLNGCKNL-EHLP---RTISALKYLSTLNL   84 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~~~p------~~~~l---------~~L~~L~l~~~~~l-~~lp---~~~~~l~~L~~L~l   84 (189)
                      +..+..+++|++|++++|.++..+      .+..+         ++|++|++++|..- ..++   ..+..+++|+.|++
T Consensus       115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  194 (386)
T 2ca6_A          115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM  194 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEEC
Confidence            445778999999999999987542      23334         89999999996533 2444   45678899999999


Q ss_pred             cCCCCCc------cCccccCCCCCCcEEEccCccC-----CCCChhchhccCCC-----CCCCCC-----ccccc--cCc
Q 037904           85 SGLLKFR------EFPEKTSSRDELLEIHLEGTAI-----RGLPASIELLFGNA-----APNLKN-----VPETL--GNV  141 (189)
Q Consensus        85 ~~~~~~~------~lp~~~~~l~~L~~l~l~~~~~-----~~lp~~~~~L~~L~-----~~~l~~-----lp~~~--~~l  141 (189)
                      ++| .+.      .+|..+..+++|+.|++++|.+     ..+|..+..+++|+     .+.+..     +|..+  +.+
T Consensus       195 ~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  273 (386)
T 2ca6_A          195 VQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN  273 (386)
T ss_dssp             CSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred             cCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence            996 454      2444778889999999999998     45677777777777     566664     35555  348


Q ss_pred             ccccc-ccCCcCccc-----cC----cccccccceeccCCc
Q 037904          142 ESLEV-RLSCHKRAK-----MQ----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       142 ~~L~~-l~~~~~l~~-----~~----~~l~~L~~L~l~~~~  172 (189)
                      ++|+. ....+.+..     +|    ..+++|++|+++++.
T Consensus       274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            88988 444455665     66    347999999999986

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.03  E-value=1e-12  Score=95.70  Aligned_cols=131  Identities=20%  Similarity=0.233  Sum_probs=73.7

Q ss_pred             CcEEEccCC--CccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904           33 LWEVLSDGT--DIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE  109 (189)
Q Consensus        33 L~~L~l~~~--~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~  109 (189)
                      ++...++++  .++.+| .+..+++|++|++++| .+..+| .+.++++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence            334444433  444555 5566666666666663 345555 5666666666666663 445566555555566666666


Q ss_pred             CccCCCCChhchhccCCC-----CCCCCCccc--cccCcccccc-ccCCcCcccc-C-------------ccccccccee
Q 037904          110 GTAIRGLPASIELLFGNA-----APNLKNVPE--TLGNVESLEV-RLSCHKRAKM-Q-------------NDFDCVEQIA  167 (189)
Q Consensus       110 ~~~~~~lp~~~~~L~~L~-----~~~l~~lp~--~~~~l~~L~~-l~~~~~l~~~-~-------------~~l~~L~~L~  167 (189)
                      +|.+..+| .+..++.|+     .+.++.++.  .+..+++|+. ....+.+... |             ..+++|+.|+
T Consensus       102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            66666554 344444444     455555543  5677777777 3333444332 1             4567778776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.03  E-value=2.6e-12  Score=93.46  Aligned_cols=100  Identities=11%  Similarity=0.018  Sum_probs=82.5

Q ss_pred             hhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCc
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELL  104 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  104 (189)
                      ..+..+++|++|++++|.++.+|.+..+++|++|++++| .+..+|..+..+++|+.|++++| .+..+| .++.+++|+
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred             HHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence            467888999999999999988887788899999999985 56788887777889999999985 666676 577788899


Q ss_pred             EEEccCccCCCCCh--hchhccCCC
Q 037904          105 EIHLEGTAIRGLPA--SIELLFGNA  127 (189)
Q Consensus       105 ~l~l~~~~~~~lp~--~~~~L~~L~  127 (189)
                      .|++++|.+..++.  .+..+++|+
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~  143 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCC
Confidence            99999999987654  567777766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=3.4e-09  Score=83.12  Aligned_cols=93  Identities=22%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             CCCcchhhhcCCCCcEEEccC-CCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc
Q 037904           20 PGNCSRLWEEADTLWEVLSDG-TDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE   95 (189)
Q Consensus        20 ~~~~~~~~~~l~~L~~L~l~~-~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~   95 (189)
                      ....+. +..+++|++|++++ |.++.+|  .+.++.+|+.|+|++| .+..++ ..|.++++|+.|++++ +.+..+|.
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeCH
Confidence            334555 77788899999996 9999887  7889999999999996 456555 4678999999999999 56777776


Q ss_pred             ccCCCCCCcEEEccCccCCC
Q 037904           96 KTSSRDELLEIHLEGTAIRG  115 (189)
Q Consensus        96 ~~~~l~~L~~l~l~~~~~~~  115 (189)
                      .+.....|+.|++.+|.+..
T Consensus        98 ~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             TTTCSCCCCEEECCSSCCCC
T ss_pred             HHcccCCceEEEeeCCCccC
Confidence            54333349999999988764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.85  E-value=1.7e-08  Score=79.07  Aligned_cols=86  Identities=16%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             cEEEccCC-CccCCCCccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEccC
Q 037904           34 WEVLSDGT-DIKEPLSIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLEG  110 (189)
Q Consensus        34 ~~L~l~~~-~l~~~p~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~  110 (189)
                      ..++.+++ +++.+|.+..+.+|+.|+|++++.+..+| ..|.++++|+.|++++| .+..++ ..+..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence            45688887 89999877888999999999646677777 57899999999999996 565554 5789999999999999


Q ss_pred             ccCCCCChhc
Q 037904          111 TAIRGLPASI  120 (189)
Q Consensus       111 ~~~~~lp~~~  120 (189)
                      |.+..+|..+
T Consensus        90 N~l~~~~~~~   99 (347)
T 2ifg_A           90 NALESLSWKT   99 (347)
T ss_dssp             SCCSCCCSTT
T ss_pred             CccceeCHHH
Confidence            9999988754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.83  E-value=8.9e-10  Score=87.18  Aligned_cols=146  Identities=14%  Similarity=0.102  Sum_probs=76.7

Q ss_pred             hhhhcCC-CCcEEEccCCCccCCC--CccCC-----CCCcEEeccCCcCCccCc-cc----ccCC-CCCCEEeccCCCCC
Q 037904           25 RLWEEAD-TLWEVLSDGTDIKEPL--SIELL-----FGLVQLTLNGCKNLEHLP-RT----ISAL-KYLSTLNLSGLLKF   90 (189)
Q Consensus        25 ~~~~~l~-~L~~L~l~~~~l~~~p--~~~~l-----~~L~~L~l~~~~~l~~lp-~~----~~~l-~~L~~L~l~~~~~~   90 (189)
                      +.+..++ +|++|++++|.+++..  .+..+     ++|++|++++|. ++..+ ..    +..+ ++|+.|++++|. +
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l  121 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-F  121 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred             HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-C
Confidence            3445565 6777777777766653  44443     667777777754 33332 22    3333 677777777743 3


Q ss_pred             ccCcc-----ccCC-CCCCcEEEccCccCCC-----CChhchhcc-CCC-----CCCCCCccc-----cccCc-ccccc-
Q 037904           91 REFPE-----KTSS-RDELLEIHLEGTAIRG-----LPASIELLF-GNA-----APNLKNVPE-----TLGNV-ESLEV-  146 (189)
Q Consensus        91 ~~lp~-----~~~~-l~~L~~l~l~~~~~~~-----lp~~~~~L~-~L~-----~~~l~~lp~-----~~~~l-~~L~~-  146 (189)
                      +..+.     .+.. ..+|++|++++|.+.+     ++..+..+. .|+     .+.++....     .+... ++|+. 
T Consensus       122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L  201 (362)
T 3goz_A          122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL  201 (362)
T ss_dssp             GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence            33331     1333 2467777777776653     222233222 333     455544332     23333 46766 


Q ss_pred             ccCCcCccc-----cC---c-ccccccceeccCCc
Q 037904          147 RLSCHKRAK-----MQ---N-DFDCVEQIAKKDSD  172 (189)
Q Consensus       147 l~~~~~l~~-----~~---~-~l~~L~~L~l~~~~  172 (189)
                      ..+.+.++.     ++   . ..++|++|+++++.
T Consensus       202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            334455665     33   1 23578888887764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.79  E-value=1.3e-09  Score=86.23  Aligned_cols=140  Identities=11%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             CCCcEEEccCCCccCCC--C----ccCC-CCCcEEeccCCcCCccCcc-cc----cC-CCCCCEEeccCCCCCc-----c
Q 037904           31 DTLWEVLSDGTDIKEPL--S----IELL-FGLVQLTLNGCKNLEHLPR-TI----SA-LKYLSTLNLSGLLKFR-----E   92 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~----~~~l-~~L~~L~l~~~~~l~~lp~-~~----~~-l~~L~~L~l~~~~~~~-----~   92 (189)
                      ++|++|++++|.+++.+  .    +..+ ++|++|++++|. ++..+. .+    .. .++|++|++++| .++     .
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~  157 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDE  157 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHH
Confidence            66777777777666543  2    2333 567777776644 333332 22    22 246777777664 333     2


Q ss_pred             CccccCCCC-CCcEEEccCccCCCCCh-hc----hhc-cCCC-----CCCCCC-----ccccccCc-ccccc-ccCCcCc
Q 037904           93 FPEKTSSRD-ELLEIHLEGTAIRGLPA-SI----ELL-FGNA-----APNLKN-----VPETLGNV-ESLEV-RLSCHKR  153 (189)
Q Consensus        93 lp~~~~~l~-~L~~l~l~~~~~~~lp~-~~----~~L-~~L~-----~~~l~~-----lp~~~~~l-~~L~~-l~~~~~l  153 (189)
                      ++..+..+. +|++|++++|.+..... .+    ... +.|+     .+.+..     ++..+..+ ++|+. ..+.+.+
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            333344443 66777777766654332 22    222 2343     445544     44444442 35666 3333445


Q ss_pred             cccC--------cccccccceeccCCc
Q 037904          154 AKMQ--------NDFDCVEQIAKKDSD  172 (189)
Q Consensus       154 ~~~~--------~~l~~L~~L~l~~~~  172 (189)
                      ...+        ..+++|+.|++++|.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            4443        345566666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=1.9e-08  Score=78.52  Aligned_cols=70  Identities=14%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             CCCCcEEEccCccCCCCCh-hchhccCCC----CCCCCCccc-cccCccccc-c-ccCCcCccccC----ccccccccee
Q 037904          100 RDELLEIHLEGTAIRGLPA-SIELLFGNA----APNLKNVPE-TLGNVESLE-V-RLSCHKRAKMQ----NDFDCVEQIA  167 (189)
Q Consensus       100 l~~L~~l~l~~~~~~~lp~-~~~~L~~L~----~~~l~~lp~-~~~~l~~L~-~-l~~~~~l~~~~----~~l~~L~~L~  167 (189)
                      +++|+.+++++|.+..+|. .|.++..|+    ..+++.++. +|.++++|+ . ... +.++.++    ..+++|+.++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~-~~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELP-ASVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEEC-TTCCEECTTTTTTCTTEEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEc-ccceEEchhhhhCCccCCEEE
Confidence            5688888888888888876 467777777    445777776 577888887 6 222 2677776    5567788887


Q ss_pred             ccC
Q 037904          168 KKD  170 (189)
Q Consensus       168 l~~  170 (189)
                      +.+
T Consensus       304 l~~  306 (329)
T 3sb4_A          304 ATG  306 (329)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            744

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.69  E-value=6.7e-08  Score=75.35  Aligned_cols=90  Identities=13%  Similarity=0.127  Sum_probs=67.2

Q ss_pred             CCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc-
Q 037904           76 LKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV-  146 (189)
Q Consensus        76 l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-  146 (189)
                      +++|+.+++++| .+..+|+ .+..+.+|+.+++..+ ++.++. .|.++..|+     .+.++.++. +|.++++|+. 
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEE
Confidence            778999999984 5777775 5889999999999987 777754 466666664     457777765 6888999998 


Q ss_pred             ccCCcCccccC----ccccccccee
Q 037904          147 RLSCHKRAKMQ----NDFDCVEQIA  167 (189)
Q Consensus       147 l~~~~~l~~~~----~~l~~L~~L~  167 (189)
                      ....+.++.++    ..+++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            55557788887    4455666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.60  E-value=3.8e-09  Score=85.64  Aligned_cols=32  Identities=13%  Similarity=0.085  Sum_probs=16.8

Q ss_pred             CCcEEEccCCCccC-----CC-CccCCCCCcEEeccCC
Q 037904           32 TLWEVLSDGTDIKE-----PL-SIELLFGLVQLTLNGC   63 (189)
Q Consensus        32 ~L~~L~l~~~~l~~-----~p-~~~~l~~L~~L~l~~~   63 (189)
                      +|++|++++|.+++     ++ .+..+++|+.|++++|
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  123 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  123 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence            45555555555542     23 4455555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.55  E-value=5.2e-09  Score=84.87  Aligned_cols=146  Identities=13%  Similarity=0.137  Sum_probs=87.6

Q ss_pred             chhhhcCCCCcEEEccCCCccCC------C-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCCCCc
Q 037904           24 SRLWEEADTLWEVLSDGTDIKEP------L-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLLKFR   91 (189)
Q Consensus        24 ~~~~~~l~~L~~L~l~~~~l~~~------p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~   91 (189)
                      ++.+..+++|++|++++|.+++.      + .+..+++|+.|++++| .++.     ++..+.++++|+.|++++| .+.
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~  297 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELG  297 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCc
Confidence            44566788889999988877653      2 2235778888888886 4554     5666777888888888885 333


Q ss_pred             c-----CccccC-CCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCCCc-ccccc----C-cccccc--c
Q 037904           92 E-----FPEKTS-SRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLKNV-PETLG----N-VESLEV--R  147 (189)
Q Consensus        92 ~-----lp~~~~-~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~~l-p~~~~----~-l~~L~~--l  147 (189)
                      .     +...+. ..++|+.|++++|.+..     ++..+..++.|+     .+.+... +..+.    . .++|+.  +
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence            1     222222 22477888888777654     344455555555     4444332 11122    1 446666  4


Q ss_pred             cCCcCcc-----ccC---cccccccceeccCCc
Q 037904          148 LSCHKRA-----KMQ---NDFDCVEQIAKKDSD  172 (189)
Q Consensus       148 ~~~~~l~-----~~~---~~l~~L~~L~l~~~~  172 (189)
                      .+| .+.     .++   ..+++|++|+++++.
T Consensus       378 ~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          378 ADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            443 444     344   446777777777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.53  E-value=5.4e-09  Score=87.29  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=40.9

Q ss_pred             cCCCCcEEEccCC-CccC--CC-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCC-CC--ccCccc
Q 037904           29 EADTLWEVLSDGT-DIKE--PL-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLL-KF--REFPEK   96 (189)
Q Consensus        29 ~l~~L~~L~l~~~-~l~~--~p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~-~~--~~lp~~   96 (189)
                      .+++|++|++++| .++.  ++ .+.++++|++|++++|. +..     ++.....+++|+.|++++|. .+  ..++..
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence            4667777777766 4443  23 33456667777776654 221     12222245566666666643 11  011112


Q ss_pred             cCCCCCCcEEEccCc
Q 037904           97 TSSRDELLEIHLEGT  111 (189)
Q Consensus        97 ~~~l~~L~~l~l~~~  111 (189)
                      +..+++|++|+++++
T Consensus       207 ~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHCTTCCEEECCTT
T ss_pred             HHhCCCCcEEecCCC
Confidence            233455666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.49  E-value=5.5e-08  Score=81.23  Aligned_cols=12  Identities=8%  Similarity=0.235  Sum_probs=5.5

Q ss_pred             CCCCCCEEeccC
Q 037904           75 ALKYLSTLNLSG   86 (189)
Q Consensus        75 ~l~~L~~L~l~~   86 (189)
                      ++++|+.|++++
T Consensus       218 ~~~~L~~L~L~~  229 (592)
T 3ogk_B          218 NCRSLVSVKVGD  229 (592)
T ss_dssp             HCTTCCEEECSS
T ss_pred             hCCCCcEEeccC
Confidence            444444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.43  E-value=1.1e-07  Score=79.49  Aligned_cols=101  Identities=13%  Similarity=-0.041  Sum_probs=61.6

Q ss_pred             hhhcCCCCcEEEccCCCccCC-----C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCC---ccCccc
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-----L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKF---REFPEK   96 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~---~~lp~~   96 (189)
                      +...+++|++|++++|.++.+     + .+.++++|+.|++++| .+..+|..+.++++|+.|++..+...   ...+..
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            344566777777777666532     2 3456788888888885 35557777777888888888643222   223345


Q ss_pred             cCCCCCCcEEEccCccCCCCChhchhccCCC
Q 037904           97 TSSRDELLEIHLEGTAIRGLPASIELLFGNA  127 (189)
Q Consensus        97 ~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~  127 (189)
                      ++.+++|+.+++.++....+|..+..+++|+
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIR  296 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCc
Confidence            5566666666666654444555444444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.43  E-value=1.4e-08  Score=84.73  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             hhcCCCCcEEEccCCCccCCC--Ccc-CCCCCcEEeccCCcCCcc--CcccccCCCCCCEEeccCCCCCcc-----Cccc
Q 037904           27 WEEADTLWEVLSDGTDIKEPL--SIE-LLFGLVQLTLNGCKNLEH--LPRTISALKYLSTLNLSGLLKFRE-----FPEK   96 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p--~~~-~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~   96 (189)
                      ...+++|++|++++|.+++..  .+. .+++|+.|++++|..++.  ++..+.++++|++|++++|. +..     ++..
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~  179 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF  179 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH
Confidence            456788999999988776543  443 678999999998865554  45545578999999999875 322     3334


Q ss_pred             cCCCCCCcEEEccCcc
Q 037904           97 TSSRDELLEIHLEGTA  112 (189)
Q Consensus        97 ~~~l~~L~~l~l~~~~  112 (189)
                      ...+++|+.|+++++.
T Consensus       180 ~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CTTCCCCCEEECTTCC
T ss_pred             hhcCCcCcEEEecccC
Confidence            4467789999998876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=3.4e-07  Score=65.17  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=65.0

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCC----CCCCEEeccCCCCCccCc-cccCCCCCC
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISAL----KYLSTLNLSGLLKFREFP-EKTSSRDEL  103 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l----~~L~~L~l~~~~~~~~lp-~~~~~l~~L  103 (189)
                      .|++|++++|.+++..  .+.++++|+.|+|++|..++.-- ..+..+    ++|+.|++++|..++.-- ..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            6899999999988765  67899999999999998777532 234443    479999999998886522 345678899


Q ss_pred             cEEEccCcc-CCC
Q 037904          104 LEIHLEGTA-IRG  115 (189)
Q Consensus       104 ~~l~l~~~~-~~~  115 (189)
                      +.|+++++. +++
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            999999864 443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.10  E-value=1.3e-07  Score=75.23  Aligned_cols=140  Identities=11%  Similarity=0.145  Sum_probs=69.7

Q ss_pred             CCCcEEEccCCCccCCC--Ccc-----CCCCCcEEeccCCcCCcc-Ccccc-cCCCCCCEEeccCCCCCcc-----Cccc
Q 037904           31 DTLWEVLSDGTDIKEPL--SIE-----LLFGLVQLTLNGCKNLEH-LPRTI-SALKYLSTLNLSGLLKFRE-----FPEK   96 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~-----~l~~L~~L~l~~~~~l~~-lp~~~-~~l~~L~~L~l~~~~~~~~-----lp~~   96 (189)
                      +.+++|++++|.++...  .+.     ...+|+.|++++|. ++. ....+ ..+.+|+.|++++| .++.     +...
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence            55677777777665432  221     22567777777653 221 11111 23445666777664 3322     1112


Q ss_pred             c-CCCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCCC-----ccccccCcccccc-ccCCcCccccC--
Q 037904           97 T-SSRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLKN-----VPETLGNVESLEV-RLSCHKRAKMQ--  157 (189)
Q Consensus        97 ~-~~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~~-----lp~~~~~l~~L~~-l~~~~~l~~~~--  157 (189)
                      + ...+.|+.|++++|.+.+     ++..+...+.|+     .|.+..     ++..+...+.|+. ....+.++..+  
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            2 234556667776666543     233333334444     344432     2334555566776 33334555433  


Q ss_pred             ------cccccccceeccCCc
Q 037904          158 ------NDFDCVEQIAKKDSD  172 (189)
Q Consensus       158 ------~~l~~L~~L~l~~~~  172 (189)
                            ...++|++|+++++.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHhCCCCCEEeccCCC
Confidence                  234677888887765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.10  E-value=3.8e-05  Score=61.60  Aligned_cols=141  Identities=12%  Similarity=0.110  Sum_probs=74.8

Q ss_pred             hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCC---------------
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGL---------------   87 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~---------------   87 (189)
                      .+.++++|+.+++.+|+++.++  .|. +.+|+.+.+..  .++.++. .|.++++|+.+++..+               
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~  251 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGIT  251 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCS
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccCccccccccCCcc
Confidence            4566777777777777666665  333 45666666653  2444442 4556666666666531               


Q ss_pred             -----CCCccCc-cccCCCCCCcEEEccCccCC-----CCC-hhchhccCCC----CCCCCCccc-cccCcccccc-ccC
Q 037904           88 -----LKFREFP-EKTSSRDELLEIHLEGTAIR-----GLP-ASIELLFGNA----APNLKNVPE-TLGNVESLEV-RLS  149 (189)
Q Consensus        88 -----~~~~~lp-~~~~~l~~L~~l~l~~~~~~-----~lp-~~~~~L~~L~----~~~l~~lp~-~~~~l~~L~~-l~~  149 (189)
                           +.+..++ ..+..+.+|+.+.+.++.+.     .++ ..|.++..|+    .++++.++. +|.++++|+. .. 
T Consensus       252 ~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l-  330 (401)
T 4fdw_A          252 TVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI-  330 (401)
T ss_dssp             EEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE-
T ss_pred             EEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE-
Confidence                 0122222 24555666666666655443     232 2345555554    344555554 4555666666 22 


Q ss_pred             CcCccccC----cccccccceeccCC
Q 037904          150 CHKRAKMQ----NDFDCVEQIAKKDS  171 (189)
Q Consensus       150 ~~~l~~~~----~~l~~L~~L~l~~~  171 (189)
                      .+.++.++    ..+ +|+.+++.+.
T Consensus       331 p~~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          331 PANVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred             CccccEEcHHhCCCC-CCCEEEEcCC
Confidence            23355554    344 6777776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=1.1e-05  Score=61.10  Aligned_cols=62  Identities=27%  Similarity=0.366  Sum_probs=33.6

Q ss_pred             cCCCCCcEEeccCCcCCccC---cccccCCCCCCEEeccCCCCCccCc--cccCCCCCCcEEEccCccCC
Q 037904           50 ELLFGLVQLTLNGCKNLEHL---PRTISALKYLSTLNLSGLLKFREFP--EKTSSRDELLEIHLEGTAIR  114 (189)
Q Consensus        50 ~~l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~l~l~~~~~~  114 (189)
                      .++++|+.|+|++| .+..+   |..+..+++|+.|++++ +.+..+.  ..+..+ +|+.|++++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCcCc
Confidence            34566666666664 33333   33445666667777666 3444432  122223 6677777776664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.83  E-value=0.00017  Score=57.76  Aligned_cols=74  Identities=12%  Similarity=0.178  Sum_probs=38.6

Q ss_pred             CcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEEcc
Q 037904           33 LWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIHLE  109 (189)
Q Consensus        33 L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~  109 (189)
                      |+.+.+.. .++.++  .|.+|.+|+.+++.+ +.+..++.....+.+|+.+.+..  .+..++ ..+..+.+|+.+.+.
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECC
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecC
Confidence            44444443 344443  555666666666655 34555554433455666666653  244443 245556666666665


Q ss_pred             C
Q 037904          110 G  110 (189)
Q Consensus       110 ~  110 (189)
                      .
T Consensus       235 ~  235 (401)
T 4fdw_A          235 E  235 (401)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.74  E-value=2.7e-06  Score=67.58  Aligned_cols=125  Identities=15%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             CCCcEEEccCCCccCCC---CccCCCCCcEEeccCCcCCccCc-cc----c-cCCCCCCEEeccCCCCCcc-----Cccc
Q 037904           31 DTLWEVLSDGTDIKEPL---SIELLFGLVQLTLNGCKNLEHLP-RT----I-SALKYLSTLNLSGLLKFRE-----FPEK   96 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p---~~~~l~~L~~L~l~~~~~l~~lp-~~----~-~~l~~L~~L~l~~~~~~~~-----lp~~   96 (189)
                      ++|++|++++|.+++..   -...+.+|+.|++++|. ++... ..    + ...++|+.|++++|. ++.     ++..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            68999999999887542   33456789999999964 44321 22    2 246789999999964 432     4455


Q ss_pred             cCCCCCCcEEEccCccCCC-----CChhchhccCCC-----CCCCCC-----ccccccCcccccc-ccCCcCccccC
Q 037904           97 TSSRDELLEIHLEGTAIRG-----LPASIELLFGNA-----APNLKN-----VPETLGNVESLEV-RLSCHKRAKMQ  157 (189)
Q Consensus        97 ~~~l~~L~~l~l~~~~~~~-----lp~~~~~L~~L~-----~~~l~~-----lp~~~~~l~~L~~-l~~~~~l~~~~  157 (189)
                      +...++|++|++++|.+.+     ++..+...++|+     .|.++.     +...+...+.|+. ..+.|.++..+
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            6777889999999998764     234455555555     566653     3334555677888 44445566544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.70  E-value=2.4e-05  Score=55.60  Aligned_cols=58  Identities=12%  Similarity=0.219  Sum_probs=33.0

Q ss_pred             CCCcEEeccCCcCCccC-cccccCCCCCCEEeccCCCCCccCc-cccCCC----CCCcEEEccCc
Q 037904           53 FGLVQLTLNGCKNLEHL-PRTISALKYLSTLNLSGLLKFREFP-EKTSSR----DELLEIHLEGT  111 (189)
Q Consensus        53 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l----~~L~~l~l~~~  111 (189)
                      ..|+.|++++|. ++.. -..+.++++|+.|++++|..++.-- ..+..+    ++|++|++++|
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence            457777777765 3332 2335667777777777776654321 122222    24666766664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.46  E-value=0.00013  Score=57.77  Aligned_cols=143  Identities=15%  Similarity=0.084  Sum_probs=68.8

Q ss_pred             hhcCCCCcEEEccCCCcc----------CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCcc
Q 037904           27 WEEADTLWEVLSDGTDIK----------EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPE   95 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~----------~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~   95 (189)
                      ...+++|+.|.+.+....          .++ .+..+++|+.|++++|..+ .++. + .+++|+.|++..|........
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            445667777776543221          122 3345677777777775322 2333 3 366777777766432111111


Q ss_pred             cc--CCCCCCcEEEccC--cc------CCCCChhc--hhccCCC-----CCCCCC-ccccc---cCcccccc-ccCCcCc
Q 037904           96 KT--SSRDELLEIHLEG--TA------IRGLPASI--ELLFGNA-----APNLKN-VPETL---GNVESLEV-RLSCHKR  153 (189)
Q Consensus        96 ~~--~~l~~L~~l~l~~--~~------~~~lp~~~--~~L~~L~-----~~~l~~-lp~~~---~~l~~L~~-l~~~~~l  153 (189)
                      .+  ..+++|++|+|..  +.      +..+...+  ..+++|+     .+.+.. .+..+   ..+++|+. ...++.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            22  2466777777642  11      11111111  1122232     222221 11111   24667777 4455666


Q ss_pred             ccc-----C---cccccccceeccCCc
Q 037904          154 AKM-----Q---NDFDCVEQIAKKDSD  172 (189)
Q Consensus       154 ~~~-----~---~~l~~L~~L~l~~~~  172 (189)
                      +..     +   ..+++|+.|++++|.
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCc
Confidence            652     2   346788888888774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.32  E-value=0.00012  Score=52.28  Aligned_cols=89  Identities=17%  Similarity=0.250  Sum_probs=66.1

Q ss_pred             hhhhcCCCCcEEEccCC-CccCC-----C-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCCCCcc
Q 037904           25 RLWEEADTLWEVLSDGT-DIKEP-----L-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLLKFRE   92 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~-~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~   92 (189)
                      .++...+.|++|++++| .+.+.     . .+...+.|++|++++|. +..     +...+...++|++|++++| .++.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~  107 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISG  107 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence            34667889999999999 88753     2 45667899999999964 442     3444556688999999995 4443


Q ss_pred             -----CccccCCCCCCcEEEc--cCccCCC
Q 037904           93 -----FPEKTSSRDELLEIHL--EGTAIRG  115 (189)
Q Consensus        93 -----lp~~~~~l~~L~~l~l--~~~~~~~  115 (189)
                           +...+...+.|++|++  ++|.+.+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence                 4566777788999999  7787764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.27  E-value=8.9e-05  Score=52.92  Aligned_cols=88  Identities=13%  Similarity=0.102  Sum_probs=65.7

Q ss_pred             hhhhcCCCCcEEEccCCCccCC-----C-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEec--cCCCCCc
Q 037904           25 RLWEEADTLWEVLSDGTDIKEP-----L-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNL--SGLLKFR   91 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l--~~~~~~~   91 (189)
                      +.+...++|++|++++|.+.+.     . .+...+.|++|++++|. ++.     +...+...++|+.|++  ++| .++
T Consensus        59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~  136 (185)
T 1io0_A           59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQ-PLG  136 (185)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCC
T ss_pred             HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCC
Confidence            3455678999999999988763     2 44556789999999964 443     4566777889999999  664 454


Q ss_pred             c-----CccccCCCCCCcEEEccCccCC
Q 037904           92 E-----FPEKTSSRDELLEIHLEGTAIR  114 (189)
Q Consensus        92 ~-----lp~~~~~l~~L~~l~l~~~~~~  114 (189)
                      .     +.+.+...+.|+.|++++|.+.
T Consensus       137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          137 NNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2     4455666788999999998764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.18  E-value=0.00035  Score=52.92  Aligned_cols=33  Identities=15%  Similarity=0.075  Sum_probs=15.3

Q ss_pred             CCCCcEEEccCCCccCCC----CccCCCCCcEEeccC
Q 037904           30 ADTLWEVLSDGTDIKEPL----SIELLFGLVQLTLNG   62 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~p----~~~~l~~L~~L~l~~   62 (189)
                      +++|+.|++++|+++.++    .+..+++|+.|+|++
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  205 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC
Confidence            444555555555444432    223444555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.58  E-value=0.0005  Score=54.32  Aligned_cols=130  Identities=14%  Similarity=0.043  Sum_probs=75.6

Q ss_pred             cchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccc--cCCCCCCEEeccCCCC-------CccC
Q 037904           23 CSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTI--SALKYLSTLNLSGLLK-------FREF   93 (189)
Q Consensus        23 ~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~~~~-------~~~l   93 (189)
                      ...++..+++|++|.++++.-..++.+. +.+|+.|++..|..-......+  ..+++|+.|+++.+..       +..+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            4456778899999999987312333333 7889999998754222211223  2688999999863211       2222


Q ss_pred             cccc--CCCCCCcEEEccCccCCC-CChhc---hhccCCC-----CCCCCC-----ccccccCcccccc--ccCCcCcc
Q 037904           94 PEKT--SSRDELLEIHLEGTAIRG-LPASI---ELLFGNA-----APNLKN-----VPETLGNVESLEV--RLSCHKRA  154 (189)
Q Consensus        94 p~~~--~~l~~L~~l~l~~~~~~~-lp~~~---~~L~~L~-----~~~l~~-----lp~~~~~l~~L~~--l~~~~~l~  154 (189)
                      ...+  ..+++|+.|++..|.+.. .+..+   ..++.|+     ++.+..     ++..+..+++|+.  +.+ +.+.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~-n~i~  320 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY-NYLS  320 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS-BBCC
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC-CcCC
Confidence            2222  357899999998877653 11111   1233444     565654     3444456677877  444 3444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.36  E-value=0.03  Score=43.89  Aligned_cols=96  Identities=15%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-ccCCCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-KTSSRDE  102 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  102 (189)
                      +....+++.+.+..+ ++.++  .+.++..|+.+.+..  .++.+. ..+.++.+|+.+.+..  .+..++. .+..+.+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~  287 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccccccc
Confidence            344556666666543 44443  566677777777754  244444 3455677777777754  3444443 4566677


Q ss_pred             CcEEEccCccCCCCCh-hchhccCCC
Q 037904          103 LLEIHLEGTAIRGLPA-SIELLFGNA  127 (189)
Q Consensus       103 L~~l~l~~~~~~~lp~-~~~~L~~L~  127 (189)
                      |+.+.+..+.++.++. .|.++..|+
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             cccccccccccceehhhhhcCCCCCC
Confidence            7777777666666543 355544444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.34  E-value=0.047  Score=42.75  Aligned_cols=78  Identities=12%  Similarity=0.073  Sum_probs=38.8

Q ss_pred             hcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCC
Q 037904           28 EEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDEL  103 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L  103 (189)
                      ..+..|+.+.+..+ ++.++  .+.++..|+.+.+..  .+..++. .+.+|.+|+.+.+.+ ..+..++ ..+..+.+|
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTC
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCC
Confidence            34455555555443 44443  455555566555543  2344432 345556666666554 2344443 244555556


Q ss_pred             cEEEcc
Q 037904          104 LEIHLE  109 (189)
Q Consensus       104 ~~l~l~  109 (189)
                      +.+.+.
T Consensus       313 ~~i~lp  318 (379)
T 4h09_A          313 SSVTLP  318 (379)
T ss_dssp             CEEECC
T ss_pred             CEEEcC
Confidence            665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.22  E-value=0.036  Score=43.81  Aligned_cols=57  Identities=16%  Similarity=0.167  Sum_probs=39.5

Q ss_pred             hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEecc
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLS   85 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~   85 (189)
                      .|.++.+|+++.+.. .++.++  .|.+|.+|+.+++..  .++.++. .+.++.+|+.+.+.
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhccc
Confidence            466778888888864 377776  788888888888865  2555543 46667777666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.00  E-value=0.015  Score=46.09  Aligned_cols=90  Identities=12%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             hhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCc-cccCCCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFP-EKTSSRDE  102 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~  102 (189)
                      +..+..++.+....+.   ++  .+..+.+|+.+.+..  .++.++ ..|.++.+|+.+++..  .++.++ ..+..+.+
T Consensus       272 F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS  344 (394)
T ss_dssp             TTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred             cccccccceeccCcee---ecccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence            3445555555554432   23  466677777777754  255554 3566777787777764  355554 35667777


Q ss_pred             CcEEEccCccCCCCCh-hchhcc
Q 037904          103 LLEIHLEGTAIRGLPA-SIELLF  124 (189)
Q Consensus       103 L~~l~l~~~~~~~lp~-~~~~L~  124 (189)
                      |+.+.+..+ ++.+.. .|.++.
T Consensus       345 L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          345 LSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             CCEECCCTT-CCEECTTTBTTCT
T ss_pred             CCEEEECcc-ccEehHHHhhCCC
Confidence            777777554 444432 344433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.81  E-value=0.042  Score=43.44  Aligned_cols=96  Identities=9%  Similarity=0.157  Sum_probs=67.0

Q ss_pred             hhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRD  101 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~  101 (189)
                      .+.++..|+.+.+.++ +..++  .+.++..|+.+.+..  .+..++. .|.+|.+|+.+++..  .++.+. ..+..+.
T Consensus       260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred             eeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCC
Confidence            4667788888888654 34454  778888999888863  4666664 577889999999875  355554 4677888


Q ss_pred             CCcEEEccCccCCCCCh-hchhccCCC
Q 037904          102 ELLEIHLEGTAIRGLPA-SIELLFGNA  127 (189)
Q Consensus       102 ~L~~l~l~~~~~~~lp~-~~~~L~~L~  127 (189)
                      +|+.+.+..+ ++.+.. .|.++.+|+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            8999888643 555643 456654444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.75  E-value=0.032  Score=37.20  Aligned_cols=52  Identities=25%  Similarity=0.245  Sum_probs=34.9

Q ss_pred             cEEEccCCCcc--CCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCC
Q 037904           34 WEVLSDGTDIK--EPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLL   88 (189)
Q Consensus        34 ~~L~l~~~~l~--~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~   88 (189)
                      ..++-++++++  .+| .+.  .+++.|+|++ +.++.+|. .|..+++|+.|++.+|+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            36677777777  777 443  3577888887 45667765 35667777777777643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.56  E-value=0.099  Score=41.23  Aligned_cols=99  Identities=13%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             ccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccCccCCCCC-
Q 037904           43 IKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEGTAIRGLP-  117 (189)
Q Consensus        43 l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~lp-  117 (189)
                      ++.+.  .|.++..|+.+.+.. . ...+. ..+.++..|+.+.+..  .+..+++ .+..+.+|+.+.+..+ ++.+. 
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~  327 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILD  327 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             ceEcccceeeecccccEEeccc-c-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence            44454  688899999999875 2 33444 4678899999999974  4666664 5788899999999754 55553 


Q ss_pred             hhchhccCCC----CCCCCCccc-cccCcccccc
Q 037904          118 ASIELLFGNA----APNLKNVPE-TLGNVESLEV  146 (189)
Q Consensus       118 ~~~~~L~~L~----~~~l~~lp~-~~~~l~~L~~  146 (189)
                      ..|.++.+|+    .++++.+.. +|.++++|+.
T Consensus       328 ~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSSVTKIPESAFSNCTALNN  361 (394)
T ss_dssp             TTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCE
T ss_pred             hHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCE
Confidence            3466655555    344555544 4555555555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.23  E-value=0.021  Score=38.14  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=30.6

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCc
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCK   64 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~   64 (189)
                      ++++.|++++|+|+.+|  .+..+.+|++|+|++|.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            36999999999999998  78899999999999964

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=88.11  E-value=0.45  Score=34.05  Aligned_cols=83  Identities=14%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             hhcCCCCcEEEccCC-CccCC-----C-CccCCCCCcEEeccCCcCCc-----cCcccccCCCCCCEEeccCCCCCc---
Q 037904           27 WEEADTLWEVLSDGT-DIKEP-----L-SIELLFGLVQLTLNGCKNLE-----HLPRTISALKYLSTLNLSGLLKFR---   91 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~-~l~~~-----p-~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~---   91 (189)
                      ..+-+.|++|+++++ ++.+.     - .+..-..|+.|+|++|. ++     .+...+..=+.|+.|++++| .++   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G  114 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTPEL  114 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence            445678999999885 66542     2 44555789999999854 44     23334444577999999884 443   


Q ss_pred             --cCccccCCCCCCcEEEccCc
Q 037904           92 --EFPEKTSSRDELLEIHLEGT  111 (189)
Q Consensus        92 --~lp~~~~~l~~L~~l~l~~~  111 (189)
                        .+-+.+..-..|+.|+++++
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCC
Confidence              23345665667899988764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=82.85  E-value=0.75  Score=32.91  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             cCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCCCCc-----cCccccCCCCCCcEEEccCccCCC
Q 037904           50 ELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLLKFR-----EFPEKTSSRDELLEIHLEGTAIRG  115 (189)
Q Consensus        50 ~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~l~l~~~~~~~  115 (189)
                      .+-..|+.|++++++.+..     +-..+..=+.|+.|++++| .++     .+.+.+..-+.|+.|+|+.|.+..
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3446799999987545553     3445566678999999996 443     344455556789999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.59
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.58
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.36
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.31
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.31
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.29
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.12
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.01
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.0
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.99
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.94
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.26
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.36

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.5e-15  Score=109.74  Aligned_cols=136  Identities=17%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEcc
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLE  109 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~  109 (189)
                      ++++|++++|.++.+|  .+.++++|++|++++| .++.+|. ++.+++|+.|++++| .+...+..+..+++|+.++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccccc-ccccccccccccccccccccc
Confidence            4566666666666654  4556666666666663 3454443 345556666666653 444455555555555555555


Q ss_pred             CccCCC------------------------CChh-chhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC
Q 037904          110 GTAIRG------------------------LPAS-IELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ  157 (189)
Q Consensus       110 ~~~~~~------------------------lp~~-~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~  157 (189)
                      ++.+..                        +|.. +..++.|+     .+.++.+|. .+..+++|+. ....|.++.+|
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccC
Confidence            554444                        3322 22333333     455555554 3555566666 33334555665


Q ss_pred             ---cccccccceeccC
Q 037904          158 ---NDFDCVEQIAKKD  170 (189)
Q Consensus       158 ---~~l~~L~~L~l~~  170 (189)
                         ..+++|+.|++++
T Consensus       189 ~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             TTTTTTCCCSEEECCS
T ss_pred             hhHCCCCCCCEEEecC
Confidence               3345566666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-14  Score=107.23  Aligned_cols=124  Identities=19%  Similarity=0.145  Sum_probs=92.3

Q ss_pred             hhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCC----------------
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLL----------------   88 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~----------------   88 (189)
                      ..+.++++|++|++++|+++.+|.++.+++|++|++++| .+...+..+.++++|+.|+++++.                
T Consensus        49 ~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  127 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (266)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             HHhhccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccceeeccccccccccc
Confidence            456778888888888888887775567788888888884 566666667777777777776532                


Q ss_pred             -------CCccCcc-ccCCCCCCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccccccCcccccc--ccC
Q 037904           89 -------KFREFPE-KTSSRDELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPETLGNVESLEV--RLS  149 (189)
Q Consensus        89 -------~~~~lp~-~~~~l~~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~--l~~  149 (189)
                             .+..+|. .+..+..++.+++++|.+..++. .+..++.|+     .|.++.+|.++..+++|+.  +.+
T Consensus       128 ~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             cccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecC
Confidence                   2233332 34567889999999999998865 467777776     7899999999999999988  554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.57  E-value=4.6e-15  Score=113.47  Aligned_cols=156  Identities=17%  Similarity=0.155  Sum_probs=86.5

Q ss_pred             hhhhcCCCCcEEEccC-CCcc-CCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCC
Q 037904           25 RLWEEADTLWEVLSDG-TDIK-EPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRD  101 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~-~~l~-~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~  101 (189)
                      ..+.++++|++|++++ |++. .+| +++++++|++|++++|+.....+..+..+.+|+.++++.|.....+|..++.++
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc
Confidence            3445555555555554 4444 345 555555555555555433333333344555555555555444455666677777


Q ss_pred             CCcEEEccCccCC-CCChhchhccCCC-----------------------------------------------------
Q 037904          102 ELLEIHLEGTAIR-GLPASIELLFGNA-----------------------------------------------------  127 (189)
Q Consensus       102 ~L~~l~l~~~~~~-~lp~~~~~L~~L~-----------------------------------------------------  127 (189)
                      .++.+++++|.+. .+|..+..+..+.                                                     
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~  229 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             ccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7777777776654 4555554444331                                                     


Q ss_pred             CCCCCCccccccCcccccc-ccCCcCcc-ccC---cccccccceeccCCcchhhccccc
Q 037904          128 APNLKNVPETLGNVESLEV-RLSCHKRA-KMQ---NDFDCVEQIAKKDSDSWKKNVDEG  181 (189)
Q Consensus       128 ~~~l~~lp~~~~~l~~L~~-l~~~~~l~-~~~---~~l~~L~~L~l~~~~~l~~~~~~~  181 (189)
                      .+.+...+..+..+++|+. ....+++. .+|   +.+++|++|+++++. +.+.+|+.
T Consensus       230 ~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~-l~g~iP~~  287 (313)
T d1ogqa_         230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQG  287 (313)
T ss_dssp             SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEEECCCS
T ss_pred             cccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc-ccccCCCc
Confidence            1111222334556666766 33334444 677   567788888888875 66667764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.1e-13  Score=100.12  Aligned_cols=138  Identities=18%  Similarity=0.290  Sum_probs=93.3

Q ss_pred             cCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           29 EADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      .+..+++|++++|.++.++++..+++|++|++++| .++.++. ++.+++|++|++++| .++.+| .+..+++|+.+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccc-ccccccccccccc
Confidence            35677888888888777766677888888888874 5666664 667888888888774 566666 4677778888888


Q ss_pred             cCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCc
Q 037904          109 EGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSD  172 (189)
Q Consensus       109 ~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~  172 (189)
                      .++.+..++ .+..++.++     ++.+...+ .+..+++|+. ....+.+..++  ..+++|+.|+++++.
T Consensus       120 ~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         120 EHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccccccccccccccccccccc-cccccccccccccccccccccccccCCCCCCEEECCCCC
Confidence            877776543 355555555     45555544 3556677777 33344566665  667777777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.8e-13  Score=98.20  Aligned_cols=144  Identities=14%  Similarity=0.252  Sum_probs=115.4

Q ss_pred             hcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           28 EEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      ..++++++|+++++++++++++..+++|++|++++| .++.+++ ++++++|+.|++++| .+..++ .+..++.|+.++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccc-cccCccc-ccCCccccccccccc-cccccc-cccccccccccc
Confidence            356789999999999998877888999999999995 6777776 889999999999985 556666 478899999999


Q ss_pred             ccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCcchhhccc
Q 037904          108 LEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSDSWKKNVD  179 (189)
Q Consensus       108 l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~~~~  179 (189)
                      ++++....++ .+..++.|+     .+.+..++ .+..+++|+. ...++.+..++  +.+++|++|+++++. +.+ ++
T Consensus       113 l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~-i~~-i~  188 (199)
T d2omxa2         113 LFNNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK-VSD-IS  188 (199)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCC-CG
T ss_pred             cccccccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCccccCCCCCCEEECCCCC-CCC-Cc
Confidence            9988877653 355666666     66777776 4888888988 55567788887  788999999999985 654 44

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.4e-13  Score=91.63  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             cEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccC
Q 037904           34 WEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAI  113 (189)
Q Consensus        34 ~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~  113 (189)
                      |.|++++|+++.++.+..+.+|++|++++ +.++.+|..++.+++|+.|++++ +.++.+| .++.+++|+.+++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCC-CccCcchhhhhhhhccccccccc-ccccccC-ccccccccCeEECCCCcc
Confidence            45666666666665556666666666666 34566666666666666666666 3555554 356666666666666666


Q ss_pred             CCCC
Q 037904          114 RGLP  117 (189)
Q Consensus       114 ~~lp  117 (189)
                      .+++
T Consensus        78 ~~~~   81 (124)
T d1dcea3          78 QQSA   81 (124)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            6544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=6.1e-13  Score=95.34  Aligned_cols=134  Identities=16%  Similarity=0.257  Sum_probs=106.6

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|++|++++|++++++.++++++|+.|++++| .+..++. +.++++|+.+++++|. ...+ +.+..+++|+.+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L  133 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQ-ITDI-DPLKNLTNLNRL  133 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CCCC-GGGTTCTTCSEE
T ss_pred             cccCCCcCcCccccccccCcccccCCccccccccccc-ccccccc-cccccccccccccccc-cccc-cccchhhhhHHh
Confidence            5678999999999999999877889999999999985 5666664 8899999999999864 3333 357788999999


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccce
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQI  166 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L  166 (189)
                      ++++|.+..++ .+..++.|+     ++.++.++. ++++++|+. ....+++++++  ..+++|+.|
T Consensus       134 ~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             hhhhhhhcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence            99999988765 466666666     678888874 889999999 33445788887  666676654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.45  E-value=1.4e-13  Score=105.01  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=114.1

Q ss_pred             CCcchhhhcCCCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccC
Q 037904           21 GNCSRLWEEADTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTS   98 (189)
Q Consensus        21 ~~~~~~~~~l~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~   98 (189)
                      +..|..+.++++|++|++++|++..++  .+..+..|+.+++++|.....+|.++.+++.++.+++++|.....+|+.+.
T Consensus        91 g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~  170 (313)
T d1ogqa_          91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             cccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccc
Confidence            345677889999999999999988775  678888899999988877778888888888888888887544444554444


Q ss_pred             CC------------------------------------------------CCCcEEEccCccCCCCChhchhccCCC---
Q 037904           99 SR------------------------------------------------DELLEIHLEGTAIRGLPASIELLFGNA---  127 (189)
Q Consensus        99 ~l------------------------------------------------~~L~~l~l~~~~~~~lp~~~~~L~~L~---  127 (189)
                      .+                                                .+++.+++.++.+...++.++.++.|+   
T Consensus       171 ~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~  250 (313)
T d1ogqa_         171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD  250 (313)
T ss_dssp             CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            43                                                333444444444443344455555565   


Q ss_pred             --CCCCC-CccccccCcccccc--ccCCcCcc-ccC--cccccccceeccCCcchhh
Q 037904          128 --APNLK-NVPETLGNVESLEV--RLSCHKRA-KMQ--NDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       128 --~~~l~-~lp~~~~~l~~L~~--l~~~~~l~-~~~--~~l~~L~~L~l~~~~~l~~  176 (189)
                        .+.++ .+|.+++++++|+.  +.+ |++. .+|  +.+++|+.+++.+...+.+
T Consensus       251 Ls~N~l~g~iP~~l~~L~~L~~L~Ls~-N~l~g~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         251 LRNNRIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCS-SEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             CccCeecccCChHHhCCCCCCEEECcC-CcccccCCCcccCCCCCHHHhCCCccccC
Confidence              67887 79999999999999  555 5555 788  6788999999999887776

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=6.6e-13  Score=95.94  Aligned_cols=138  Identities=14%  Similarity=0.163  Sum_probs=112.9

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++|++|++++|.+++++.++.+++|++|++++| .++.+|. +.++++|+.|++.+|. ...++ .+..++.++.+
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~l~~l  139 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESL  139 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEE
T ss_pred             HhhCCCCCEEeCCCccccCccccccCccccccccccc-ccccccc-cccccccccccccccc-ccccc-ccccccccccc
Confidence            5678999999999999999886788999999999995 6777774 8899999999999954 44554 57788899999


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccC
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKD  170 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~  170 (189)
                      +++++.+.+.+ .+..++.|+     .+.++.++. +.++++|+. ....+.+++++  ..+++|++|++++
T Consensus       140 ~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         140 YLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             ccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence            99999887654 355666666     678888775 889999999 55556788888  7789999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.3e-12  Score=97.00  Aligned_cols=141  Identities=21%  Similarity=0.206  Sum_probs=68.9

Q ss_pred             CCcEEEccCCCccCCC--CccCCCCCcEEeccCC------------------------cCCccC-cccccCCCCCCEEec
Q 037904           32 TLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGC------------------------KNLEHL-PRTISALKYLSTLNL   84 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~------------------------~~l~~l-p~~~~~l~~L~~L~l   84 (189)
                      ++++|++++|+++.+|  .+.++++|++|+++++                        +.+..+ +.++.++++|+.|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            3455555555555554  4555555555555543                        222233 334556666666666


Q ss_pred             cCCCCCccCccccCCCCCCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCcccc
Q 037904           85 SGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKM  156 (189)
Q Consensus        85 ~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~  156 (189)
                      ++|......+..+..+..|+.+++++|.++.+|. .+..++.|+     .+.++.+|. .+.++++|+. ....+.+..+
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            6643222223344555556666666666655543 344444444     445555443 3445555555 3333333333


Q ss_pred             C----cccccccceeccCCc
Q 037904          157 Q----NDFDCVEQIAKKDSD  172 (189)
Q Consensus       157 ~----~~l~~L~~L~l~~~~  172 (189)
                      +    ..+++|++|+++++.
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSC
T ss_pred             ChhHhhhhhhcccccccccc
Confidence            2    334455555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.3e-12  Score=96.09  Aligned_cols=145  Identities=14%  Similarity=0.208  Sum_probs=103.0

Q ss_pred             cEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCC---------------------
Q 037904           34 WEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKF---------------------   90 (189)
Q Consensus        34 ~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~---------------------   90 (189)
                      ..++.++++++.+| .+.  ..+++|++++| .++.+|. ++.++++|++|+++++...                     
T Consensus        14 ~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCCCCC--CCCCEEECcCC-cCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34567788899999 654  57899999995 5778775 6889999999999874321                     


Q ss_pred             ---ccC-ccccCCCCCCcEEEccCccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCccccC-
Q 037904           91 ---REF-PEKTSSRDELLEIHLEGTAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRAKMQ-  157 (189)
Q Consensus        91 ---~~l-p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~~~~-  157 (189)
                         ..+ |..+..+++|+.+++++|.+..++. .+.....|.     .+.++.+|. .+..+++|+. ....+.+..++ 
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence               112 3356677888888888888776543 445555555     678888875 5778888888 44456778776 


Q ss_pred             ---cccccccceeccCCcchhhcccccc
Q 037904          158 ---NDFDCVEQIAKKDSDSWKKNVDEGI  182 (189)
Q Consensus       158 ---~~l~~L~~L~l~~~~~l~~~~~~~~  182 (189)
                         ..+++|+++++.++. +.+..|+.+
T Consensus       171 ~~f~~l~~L~~l~l~~N~-l~~i~~~~f  197 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNR-VAHVHPHAF  197 (284)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred             hhhccccccchhhhhhcc-ccccChhHh
Confidence               567788999988876 333234443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.9e-13  Score=91.38  Aligned_cols=123  Identities=16%  Similarity=0.129  Sum_probs=90.9

Q ss_pred             hcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccc-cCCCCCCcE
Q 037904           28 EEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEK-TSSRDELLE  105 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~  105 (189)
                      .++..+++|++++|+++.++ .+..+.+|+.|++++| .+..++ .+..+++|++|++++| .+..+|.. +..+++|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccc-cccCCCcccccccccccc
Confidence            35668999999999999998 6678899999999995 677775 4889999999999995 57777654 467889999


Q ss_pred             EEccCccCCCCChhchhccCCCCCCCCCccccccCcccccc--ccCCcCccccC-------cccccccceeccC
Q 037904          106 IHLEGTAIRGLPASIELLFGNAAPNLKNVPETLGNVESLEV--RLSCHKRAKMQ-------NDFDCVEQIAKKD  170 (189)
Q Consensus       106 l~l~~~~~~~lp~~~~~L~~L~~~~l~~lp~~~~~l~~L~~--l~~~~~l~~~~-------~~l~~L~~L~l~~  170 (189)
                      |++++|.+..++.               + ..+..+++|+.  +.+ +.+...|       ..+++|++||...
T Consensus        92 L~L~~N~i~~~~~---------------l-~~l~~l~~L~~L~l~~-N~i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          92 LILTNNSLVELGD---------------L-DPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             EECCSCCCCCGGG---------------G-GGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ceecccccccccc---------------c-cccccccccchhhcCC-CccccccchHHHHHHHCCCcCeeCCCC
Confidence            9999999887543               0 12455566666  333 3444444       4466777776443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.7e-12  Score=94.19  Aligned_cols=148  Identities=12%  Similarity=0.064  Sum_probs=103.1

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l  106 (189)
                      +++++|++++|.++.+|  .|.++++|++|++++|.....++. .+.++++++.+++..++.+..++ ..+..+++|+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            47899999999999987  688999999999999766665543 57789999999987766665554 557888999999


Q ss_pred             EccCccCCCCCh--hchhccCCC------------------------------CCCCCCccccccCcccccc--ccCCcC
Q 037904          107 HLEGTAIRGLPA--SIELLFGNA------------------------------APNLKNVPETLGNVESLEV--RLSCHK  152 (189)
Q Consensus       107 ~l~~~~~~~lp~--~~~~L~~L~------------------------------~~~l~~lp~~~~~l~~L~~--l~~~~~  152 (189)
                      +++++.+...+.  .+..+..+.                              .+.++.++....+..++..  ..+++.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            999887765543  112222221                              3344555544444444444  556677


Q ss_pred             ccccC----cccccccceeccCCcchhhcccc
Q 037904          153 RAKMQ----NDFDCVEQIAKKDSDSWKKNVDE  180 (189)
Q Consensus       153 l~~~~----~~l~~L~~L~l~~~~~l~~~~~~  180 (189)
                      ++.+|    ..+++|++|++++.. +.. +|.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~-l~~-l~~  218 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTR-IHS-LPS  218 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSC-CCC-CCS
T ss_pred             cccccHHHhcCCCCCCEEECCCCc-CCc-cCH
Confidence            88877    456788888888765 443 443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=1.5e-11  Score=93.13  Aligned_cols=57  Identities=23%  Similarity=0.074  Sum_probs=36.8

Q ss_pred             CCCcEEEccCCCccCCC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 037904           31 DTLWEVLSDGTDIKEPL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGL   87 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~   87 (189)
                      +++++|++++|+++.+|  .+.++++|++|++++|......|..+.++++|+.|++++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            45677777777777775  5667777777777775443333455666777777776663

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.8e-11  Score=89.02  Aligned_cols=143  Identities=15%  Similarity=0.258  Sum_probs=92.6

Q ss_pred             hcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEE
Q 037904           28 EEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIH  107 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~  107 (189)
                      ..+.+|+.|++.+|++++++++..+++|+.|++++| .+..+++ +..+++++.+++++| .++.++ .+..++.|+.++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCc-eeecccc-ccccccccccccccc-cccccc-cccccccccccc
Confidence            445677778888777777766677777888888774 4555543 667777777777764 344454 456667777777


Q ss_pred             ccCccCCCCCh---------------------hchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--c
Q 037904          108 LEGTAIRGLPA---------------------SIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--N  158 (189)
Q Consensus       108 l~~~~~~~lp~---------------------~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~  158 (189)
                      ++.+....++.                     .+...+.|+     ++.+...+ .+.++++|+. ...++.++.++  .
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~l~  192 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISPLA  192 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCccCCChhhc
Confidence            76654433211                     122222333     44444444 3778888888 44445788887  7


Q ss_pred             ccccccceeccCCcchhh
Q 037904          159 DFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       159 ~l~~L~~L~l~~~~~l~~  176 (189)
                      .+++|++|++++|. +++
T Consensus       193 ~l~~L~~L~Ls~N~-lt~  209 (227)
T d1h6ua2         193 SLPNLIEVHLKNNQ-ISD  209 (227)
T ss_dssp             GCTTCCEEECTTSC-CCB
T ss_pred             CCCCCCEEECcCCc-CCC
Confidence            78899999999984 655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=7.6e-12  Score=88.98  Aligned_cols=96  Identities=19%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             CCCcEEEccCCCccC-CC--CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEE
Q 037904           31 DTLWEVLSDGTDIKE-PL--SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEI  106 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~-~p--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l  106 (189)
                      +++++|++++|+++. ++  .+.++++|+.|++++|......+..+..+++|+.|++++| ++..+| ..+..+++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCccccc
Confidence            478899999998875 43  6788899999999886555555567788899999999984 666665 467888999999


Q ss_pred             EccCccCCCCCh-hchhccCCC
Q 037904          107 HLEGTAIRGLPA-SIELLFGNA  127 (189)
Q Consensus       107 ~l~~~~~~~lp~-~~~~L~~L~  127 (189)
                      +|++|.++.+|+ .|..+.+|+
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCC
T ss_pred             ccCCccccccCHHHhcCCcccc
Confidence            999999988765 366776666

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=2.9e-11  Score=87.97  Aligned_cols=139  Identities=12%  Similarity=0.151  Sum_probs=105.9

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCcc--------------
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFRE--------------   92 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--------------   92 (189)
                      +..+++|++|++++|.+++++.+..+.+++.+++++| .++.++. +.++++|+.+++++|.....              
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n-~~~~i~~-l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~  136 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN-PLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL  136 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC-CCSCCGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred             HhcCCCCcEeecCCceeeccccccccccccccccccc-ccccccc-ccccccccccccccccccccchhccccchhhhhc
Confidence            5789999999999999988766788889999999885 4566653 77888899888877543210              


Q ss_pred             ------CccccCCCCCCcEEEccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc--ccCCcCccccC--
Q 037904           93 ------FPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV--RLSCHKRAKMQ--  157 (189)
Q Consensus        93 ------lp~~~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~--l~~~~~l~~~~--  157 (189)
                            ....+..+.+|+.++++++.+...+. ++.++.|+     ++.++.++. +..+++|+.  +.+ ++++.++  
T Consensus       137 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~-N~lt~i~~l  213 (227)
T d1h6ua2         137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKN-NQISDVSPL  213 (227)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTT-SCCCBCGGG
T ss_pred             hhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEECcC-CcCCCCccc
Confidence                  11134556788999999988876543 66677776     678888875 888999999  555 4788887  


Q ss_pred             cccccccceeccC
Q 037904          158 NDFDCVEQIAKKD  170 (189)
Q Consensus       158 ~~l~~L~~L~l~~  170 (189)
                      ..+++|+.|++++
T Consensus       214 ~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 ANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEEEEE
T ss_pred             ccCCCCCEEEeeC
Confidence            7899999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=7.7e-12  Score=82.95  Aligned_cols=88  Identities=16%  Similarity=0.158  Sum_probs=77.0

Q ss_pred             hhcCCCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc--cccCCCCCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP--EKTSSRDEL  103 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L  103 (189)
                      +..+++|++|++++|.++++| .+..+++|++|++++ +.++.+|. +.++++|+.+++++ +.+..+|  ..++.+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~-~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG-VANLPRLQELLLCN-NRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccCc-cccccccCeEECCC-CccCCCCCchhhcCCCCC
Confidence            577889999999999999999 899999999999999 56788875 88999999999999 5677666  467889999


Q ss_pred             cEEEccCccCCCCC
Q 037904          104 LEIHLEGTAIRGLP  117 (189)
Q Consensus       104 ~~l~l~~~~~~~lp  117 (189)
                      +.+++++|.+...+
T Consensus        93 ~~L~l~~N~i~~~~  106 (124)
T d1dcea3          93 VLLNLQGNSLCQEE  106 (124)
T ss_dssp             CEEECTTSGGGGSS
T ss_pred             CEEECCCCcCCcCc
Confidence            99999999887543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=1.9e-11  Score=86.88  Aligned_cols=120  Identities=18%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             CcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccC
Q 037904           33 LWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEG  110 (189)
Q Consensus        33 L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~  110 (189)
                      .+.++.++++++.+| .+.  .++++|++++|.....++ ..+.++++|+.|+++++......+..+..+++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            457899999999999 664  689999999965434453 5678999999999999655455567788899999999999


Q ss_pred             ccCCCCCh-hchhccCCC-----CCCCCCccc-cccCcccccc-ccCCcCcc
Q 037904          111 TAIRGLPA-SIELLFGNA-----APNLKNVPE-TLGNVESLEV-RLSCHKRA  154 (189)
Q Consensus       111 ~~~~~lp~-~~~~L~~L~-----~~~l~~lp~-~~~~l~~L~~-l~~~~~l~  154 (189)
                      |.+..+|+ .|.+++.|+     .+.++.+|. .|..+++|+. ..+.+.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            99999865 477888777     788888876 5778888888 33334444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=5.5e-11  Score=92.14  Aligned_cols=143  Identities=15%  Similarity=0.231  Sum_probs=96.0

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      ....++|++|++++|.+++++.+..+++|+.+++++| .+..++. +..+++|+.++++++ .+..++. +..+..++.+
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~~-~l~~~~~-~~~~~~l~~l  290 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNL  290 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred             ccccCCCCEEECCCCCCCCcchhhcccccchhccccC-ccCCCCc-ccccccCCEeeccCc-ccCCCCc-cccccccccc
Confidence            4557789999999999888877778889999999885 4666665 778889999999874 4555543 5556667777


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccCCcchhh
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKDSDSWKK  176 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~  176 (189)
                      .+..+.+..++. +..+..++     .+.++.++. +..+++|+. ....+.++.++  ..+++|++|+++++. +.+
T Consensus       291 ~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~-l~~  365 (384)
T d2omza2         291 ELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ-ISD  365 (384)
T ss_dssp             ECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCB
T ss_pred             cccccccccccc-cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCc-CCC
Confidence            777776665432 33333333     556666653 666677777 33334566665  556777777776654 443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.6e-11  Score=83.98  Aligned_cols=96  Identities=17%  Similarity=0.127  Sum_probs=80.6

Q ss_pred             CCcchhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccc-cCCCCCCEEeccCCCCCccCcc--cc
Q 037904           21 GNCSRLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTI-SALKYLSTLNLSGLLKFREFPE--KT   97 (189)
Q Consensus        21 ~~~~~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~--~~   97 (189)
                      ...++.+..+++|+.|++++|.++.++.+..+++|++|++++| .+..++..+ ..+++|+.|++++| .+..+++  .+
T Consensus        31 ~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l  108 (162)
T d1a9na_          31 PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPL  108 (162)
T ss_dssp             CSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGG
T ss_pred             CccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccc-cccCCCccccccccccccceeccc-ccccccccccc
Confidence            3445566788999999999999999888889999999999995 577777654 57999999999994 6776664  67


Q ss_pred             CCCCCCcEEEccCccCCCCCh
Q 037904           98 SSRDELLEIHLEGTAIRGLPA  118 (189)
Q Consensus        98 ~~l~~L~~l~l~~~~~~~lp~  118 (189)
                      ..+++|+++++++|.+...|.
T Consensus       109 ~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_         109 ASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             GGCTTCCEEECCSSGGGGSTT
T ss_pred             ccccccchhhcCCCccccccc
Confidence            889999999999999987764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=3.1e-10  Score=87.82  Aligned_cols=138  Identities=14%  Similarity=0.220  Sum_probs=66.0

Q ss_pred             hhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEE
Q 037904           27 WEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEI  106 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l  106 (189)
                      +..+++++.+++.+|.+++++.+..+++|+.|+++++ .+..+++ +..++.++.+++..| .+..++ .+..+.+++.+
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~-~l~~~~~-~~~~~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L  312 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDIS-PISNLKNLTYL  312 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCG-GGGGCTTCSEE
T ss_pred             hhcccccchhccccCccCCCCcccccccCCEeeccCc-ccCCCCc-ccccccccccccccc-cccccc-ccchhcccCeE
Confidence            3444555555555555555444444555555555552 3333333 444555555555542 233222 24444555555


Q ss_pred             EccCccCCCCChhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC--cccccccceeccC
Q 037904          107 HLEGTAIRGLPASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ--NDFDCVEQIAKKD  170 (189)
Q Consensus       107 ~l~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~--~~l~~L~~L~l~~  170 (189)
                      ++++|.+.++++ +..+++|+     .+.++.++ ++..+++|+. ..+++.++.++  ..+++|+.|++++
T Consensus       313 ~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         313 TLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             ECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCC
T ss_pred             ECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCC
Confidence            555555555432 33344443     44455544 3555555555 33334444444  4455555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.12  E-value=7.1e-10  Score=83.70  Aligned_cols=142  Identities=13%  Similarity=0.128  Sum_probs=76.4

Q ss_pred             hcCCCCcEEEccCCCccCC---C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904           28 EEADTLWEVLSDGTDIKEP---L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDEL  103 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~---p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  103 (189)
                      ........+....+.....   + .+..+++|+.+++++| .+..+|..+  +++|+.|++.+|......+..+..+..+
T Consensus       121 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l  197 (305)
T d1xkua_         121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL  197 (305)
T ss_dssp             TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             hccccccccccccccccccCCCccccccccccCccccccC-CccccCccc--CCccCEEECCCCcCCCCChhHhhccccc
Confidence            3344455555555432221   2 4555556666666653 344444432  4556666666644444444555556666


Q ss_pred             cEEEccCccCCCCC-hhchhccCCC-----CCCCCCccccccCcccccc-ccCCcCccccC----------cccccccce
Q 037904          104 LEIHLEGTAIRGLP-ASIELLFGNA-----APNLKNVPETLGNVESLEV-RLSCHKRAKMQ----------NDFDCVEQI  166 (189)
Q Consensus       104 ~~l~l~~~~~~~lp-~~~~~L~~L~-----~~~l~~lp~~~~~l~~L~~-l~~~~~l~~~~----------~~l~~L~~L  166 (189)
                      +.|++++|.+..++ ..+..+++|+     .+.++.+|.++..+++|+. ....++++.++          ..+.+|+.|
T Consensus       198 ~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L  277 (305)
T d1xkua_         198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV  277 (305)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred             cccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEE
Confidence            66666666665543 3344444444     4556666666666777766 22234566654          234567777


Q ss_pred             eccCCc
Q 037904          167 AKKDSD  172 (189)
Q Consensus       167 ~l~~~~  172 (189)
                      ++++..
T Consensus       278 ~L~~N~  283 (305)
T d1xkua_         278 SLFSNP  283 (305)
T ss_dssp             ECCSSS
T ss_pred             ECCCCc
Confidence            777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.8e-10  Score=82.36  Aligned_cols=148  Identities=13%  Similarity=0.116  Sum_probs=97.9

Q ss_pred             hhhcCCCCcEEEccCCCccCC-C--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCcc------
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-L--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPE------   95 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~------   95 (189)
                      .+.++++|++|++++|.+... +  .+.++..++.+.+..++.+...+ ..+.++++|+.++++++ .+...+.      
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~  126 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHS  126 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC-CCCSCCCCTTTCB
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchh-hhccccccccccc
Confidence            467899999999999987764 4  67889999999887766666555 45788999999999885 3433321      


Q ss_pred             --------------------ccCCC-CCCcEEEccCccCCCCChhchhccCC------CCCCCCCcccc-ccCcccccc-
Q 037904           96 --------------------KTSSR-DELLEIHLEGTAIRGLPASIELLFGN------AAPNLKNVPET-LGNVESLEV-  146 (189)
Q Consensus        96 --------------------~~~~l-~~L~~l~l~~~~~~~lp~~~~~L~~L------~~~~l~~lp~~-~~~l~~L~~-  146 (189)
                                          .+..+ ..++.++++++.+..++........+      .++.++++|.. +.++++|+. 
T Consensus       127 l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             ccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence                                11111 23455566666666655443233222      27789999874 788999999 


Q ss_pred             ccCCcCccccC-cccc---cccceeccCCcch
Q 037904          147 RLSCHKRAKMQ-NDFD---CVEQIAKKDSDSW  174 (189)
Q Consensus       147 l~~~~~l~~~~-~~l~---~L~~L~l~~~~~l  174 (189)
                      ....++++.+| ..+.   +|+.+++.+++.+
T Consensus       207 ~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~~l  238 (242)
T d1xwdc1         207 DISRTRIHSLPSYGLENLKKLRARSTYNLKKL  238 (242)
T ss_dssp             ECTTSCCCCCCSSSCTTCCEEESSSEESSSCS
T ss_pred             ECCCCcCCccCHHHHcCCcccccCcCCCCCcC
Confidence            44556788888 4444   4555555554433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.4e-09  Score=74.67  Aligned_cols=84  Identities=24%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             hcCCCCcEEEccCC-CccCCC--CccCCCCCcEEeccCCcCCccCc-ccccCCCCCCEEeccCCCCCccCccccCCCCCC
Q 037904           28 EEADTLWEVLSDGT-DIKEPL--SIELLFGLVQLTLNGCKNLEHLP-RTISALKYLSTLNLSGLLKFREFPEKTSSRDEL  103 (189)
Q Consensus        28 ~~l~~L~~L~l~~~-~l~~~p--~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  103 (189)
                      ..++++++|+++++ .++.++  .|.++.+|+.|++++| .++.++ ..|.++++|++|++++ +.++.+|..+-....|
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l  105 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSL  105 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCC
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccC-CCCcccChhhhccccc
Confidence            34444555555433 244443  4444555555555542 334332 2344455555555554 3344444333222245


Q ss_pred             cEEEccCccC
Q 037904          104 LEIHLEGTAI  113 (189)
Q Consensus       104 ~~l~l~~~~~  113 (189)
                      +.|++++|.+
T Consensus       106 ~~L~L~~Np~  115 (156)
T d2ifga3         106 QELVLSGNPL  115 (156)
T ss_dssp             CEEECCSSCC
T ss_pred             cccccCCCcc
Confidence            5555554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=87.59  Aligned_cols=145  Identities=17%  Similarity=0.266  Sum_probs=81.5

Q ss_pred             hhcCCCCcEEEccCCCccCC-C-CccCCCCCcEEeccCCcCCccC--cccccCCCCCCEEeccCCCCCcc--CccccC-C
Q 037904           27 WEEADTLWEVLSDGTDIKEP-L-SIELLFGLVQLTLNGCKNLEHL--PRTISALKYLSTLNLSGLLKFRE--FPEKTS-S   99 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~-p-~~~~l~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~--lp~~~~-~   99 (189)
                      +..+++|++|++++|.+.+. + .++.+++|+.|++++|..++..  ..-+.++++|+.|++++|..+..  +...+. .
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            45566677777777665543 2 5556667777777776655432  22234566777777777655432  111222 2


Q ss_pred             CCCCcEEEccCc--cCCC--CChhchhccCCC------CCCCCC-ccccccCcccccc--ccCCcCccccC----ccccc
Q 037904          100 RDELLEIHLEGT--AIRG--LPASIELLFGNA------APNLKN-VPETLGNVESLEV--RLSCHKRAKMQ----NDFDC  162 (189)
Q Consensus       100 l~~L~~l~l~~~--~~~~--lp~~~~~L~~L~------~~~l~~-lp~~~~~l~~L~~--l~~~~~l~~~~----~~l~~  162 (189)
                      .+.|+.++++++  .+.+  +..-..++++|+      |..++. ....+.++++|+.  +.+|+.+..-.    ..+++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            346677776653  2221  111123334444      444542 3345667777887  77777776433    56678


Q ss_pred             ccceeccCC
Q 037904          163 VEQIAKKDS  171 (189)
Q Consensus       163 L~~L~l~~~  171 (189)
                      |+.|++.+|
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            888888887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.99  E-value=8.1e-13  Score=94.78  Aligned_cols=90  Identities=11%  Similarity=0.030  Sum_probs=59.8

Q ss_pred             hhhhcCCCCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCc
Q 037904           25 RLWEEADTLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELL  104 (189)
Q Consensus        25 ~~~~~l~~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  104 (189)
                      ..+..+++|++|++++|+++.++.+..+++|+.|++++| .++.+|.....+++|+.|++++| .+..++ .+..+++|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~  118 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEE-ECCCHH-HHHHHHHSS
T ss_pred             hHHhcccccceeECcccCCCCcccccCCccccChhhccc-ccccccccccccccccccccccc-cccccc-ccccccccc
Confidence            456667777777777777777666667777777777774 45666654444556777777774 555553 355566777


Q ss_pred             EEEccCccCCCCC
Q 037904          105 EIHLEGTAIRGLP  117 (189)
Q Consensus       105 ~l~l~~~~~~~lp  117 (189)
                      .|++++|.+..++
T Consensus       119 ~L~L~~N~i~~~~  131 (198)
T d1m9la_         119 VLYMSNNKITNWG  131 (198)
T ss_dssp             EEEESEEECCCHH
T ss_pred             ccccccchhcccc
Confidence            7777777776543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.8e-09  Score=72.36  Aligned_cols=89  Identities=16%  Similarity=0.136  Sum_probs=76.7

Q ss_pred             CCCcEEEccCCCccCCC-CccCCCCCcEEeccCCcCCccCcc-cccCCCCCCEEeccCCCCCccCc-cccCCCCCCcEEE
Q 037904           31 DTLWEVLSDGTDIKEPL-SIELLFGLVQLTLNGCKNLEHLPR-TISALKYLSTLNLSGLLKFREFP-EKTSSRDELLEIH  107 (189)
Q Consensus        31 ~~L~~L~l~~~~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~  107 (189)
                      .....+...++++.+.| .+..+++|+.|++++++.++.++. .|.++++|+.|++++| .++.++ ..+..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccccccccccccee
Confidence            34567888999999999 999999999999998777888875 6889999999999994 677774 5689999999999


Q ss_pred             ccCccCCCCChhc
Q 037904          108 LEGTAIRGLPASI  120 (189)
Q Consensus       108 l~~~~~~~lp~~~  120 (189)
                      +++|.++.+|.+.
T Consensus        87 Ls~N~l~~l~~~~   99 (156)
T d2ifga3          87 LSFNALESLSWKT   99 (156)
T ss_dssp             CCSSCCSCCCSTT
T ss_pred             ccCCCCcccChhh
Confidence            9999999988754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.87  E-value=1.6e-11  Score=87.82  Aligned_cols=115  Identities=22%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             CCcEEEccCC--CccCCC-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEc
Q 037904           32 TLWEVLSDGT--DIKEPL-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHL  108 (189)
Q Consensus        32 ~L~~L~l~~~--~l~~~p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l  108 (189)
                      ..+.+.+.+.  .++.+| ++..+.+|++|++++ +.++.++ .+.++++|+.|++++| .++.+|.....++.|+.|++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~-n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSE-EEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEEC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcc-cCCCCcc-cccCCccccChhhccc-cccccccccccccccccccc
Confidence            3556666654  577778 889999999999998 4577886 4889999999999985 67778765555667999999


Q ss_pred             cCccCCCCChhchhccCCC-----CCCCCCccc--cccCcccccc--ccCC
Q 037904          109 EGTAIRGLPASIELLFGNA-----APNLKNVPE--TLGNVESLEV--RLSC  150 (189)
Q Consensus       109 ~~~~~~~lp~~~~~L~~L~-----~~~l~~lp~--~~~~l~~L~~--l~~~  150 (189)
                      ++|.+..++ .+..+++|+     .+.++.++.  .+..+++|+.  +.++
T Consensus       101 ~~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         101 SYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccc-cccccccccccccccchhccccccccccCCCccceeecCCC
Confidence            999998874 356666665     667777763  5778888888  5443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.6e-10  Score=85.67  Aligned_cols=148  Identities=15%  Similarity=0.091  Sum_probs=102.9

Q ss_pred             cCCCCcEEEccCCCccCC--C-CccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCcc--CccccCCCCCC
Q 037904           29 EADTLWEVLSDGTDIKEP--L-SIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFRE--FPEKTSSRDEL  103 (189)
Q Consensus        29 ~l~~L~~L~l~~~~l~~~--p-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L  103 (189)
                      ....|++|+++++.++..  . .+.++++|++|++++|..-...+..+.++++|+.|++++|..++.  +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            456899999999877653  4 578899999999999865445566788899999999999988764  33334667899


Q ss_pred             cEEEccCcc-CCC--CChhchhc-cCCC------C-CCCC--CccccccCcccccc--ccCCcCccccC----ccccccc
Q 037904          104 LEIHLEGTA-IRG--LPASIELL-FGNA------A-PNLK--NVPETLGNVESLEV--RLSCHKRAKMQ----NDFDCVE  164 (189)
Q Consensus       104 ~~l~l~~~~-~~~--lp~~~~~L-~~L~------~-~~l~--~lp~~~~~l~~L~~--l~~~~~l~~~~----~~l~~L~  164 (189)
                      ++|+++++. +.+  +...+... +.|+      + ..+.  .+..-...+++|+.  +.+|..++.-.    ..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            999999853 332  22222222 2333      1 1222  12222345678888  77888876433    6678999


Q ss_pred             ceeccCCcchhh
Q 037904          165 QIAKKDSDSWKK  176 (189)
Q Consensus       165 ~L~l~~~~~l~~  176 (189)
                      +|++++|..++.
T Consensus       204 ~L~L~~C~~i~~  215 (284)
T d2astb2         204 HLSLSRCYDIIP  215 (284)
T ss_dssp             EEECTTCTTCCG
T ss_pred             EEECCCCCCCCh
Confidence            999999987765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.74  E-value=6.2e-08  Score=73.42  Aligned_cols=80  Identities=20%  Similarity=0.248  Sum_probs=36.7

Q ss_pred             CCcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccC----------------C-CCCCEEeccCCCCCccCc
Q 037904           32 TLWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISA----------------L-KYLSTLNLSGLLKFREFP   94 (189)
Q Consensus        32 ~L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~----------------l-~~L~~L~l~~~~~~~~lp   94 (189)
                      ++++|++++++++.+|.  ..++|++|++++ +.++++|..+++                + +.|++|++++| .+..+|
T Consensus        39 ~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~-N~l~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n-~l~~lp  114 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE--LPPHLESLVASC-NSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEKLP  114 (353)
T ss_dssp             TCSEEECTTSCCSCCCS--CCTTCSEEECCS-SCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSSCC
T ss_pred             CCCEEEeCCCCCCCCCC--CCCCCCEEECCC-CCCcccccchhhhhhhhhhhcccchhhhhcccccccccccc-cccccc
Confidence            34555555555555551  123455555554 344444433211                1 23555555552 344444


Q ss_pred             cccCCCCCCcEEEccCccCCCC
Q 037904           95 EKTSSRDELLEIHLEGTAIRGL  116 (189)
Q Consensus        95 ~~~~~l~~L~~l~l~~~~~~~l  116 (189)
                      . ++.+++|+.++++++.+...
T Consensus       115 ~-~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         115 E-LQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             C-CTTCTTCCEEECCSSCCSCC
T ss_pred             c-hhhhccceeecccccccccc
Confidence            3 34455555555555544433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.40  E-value=7.9e-07  Score=67.10  Aligned_cols=96  Identities=24%  Similarity=0.282  Sum_probs=69.1

Q ss_pred             CCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCccccCCCCCCcEEEccCccCCCCChhchhccCCC--CCC
Q 037904           53 FGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFPEKTSSRDELLEIHLEGTAIRGLPASIELLFGNA--APN  130 (189)
Q Consensus        53 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~lp~~~~~L~~L~--~~~  130 (189)
                      .++++|++++ ..++.+|..   .++|++|++++ +.++.+|+.+   .+|+.|++.+|.++.++.-...|+.|.  ++.
T Consensus        38 ~~l~~LdLs~-~~L~~lp~~---~~~L~~L~Ls~-N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNN-LGLSSLPEL---PPHLESLVASC-NSLTELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTT-SCCSCCCSC---CTTCSEEECCS-SCCSSCCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCSSC
T ss_pred             cCCCEEEeCC-CCCCCCCCC---CCCCCEEECCC-CCCcccccch---hhhhhhhhhhcccchhhhhccccccccccccc
Confidence            4688999999 568889863   56899999997 5788999764   468899999988877654333444443  778


Q ss_pred             CCCccccccCcccccc-ccCCcCccccC
Q 037904          131 LKNVPETLGNVESLEV-RLSCHKRAKMQ  157 (189)
Q Consensus       131 l~~lp~~~~~l~~L~~-l~~~~~l~~~~  157 (189)
                      +..+|. +..+++|+. ....+.+...+
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccc-hhhhccceeeccccccccccc
Confidence            888885 677788877 33334444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.9e-06  Score=58.73  Aligned_cols=62  Identities=26%  Similarity=0.319  Sum_probs=28.0

Q ss_pred             CCCCCcEEeccCCcCCccCc---ccccCCCCCCEEeccCCCCCccCcc-ccCCCCCCcEEEccCccCC
Q 037904           51 LLFGLVQLTLNGCKNLEHLP---RTISALKYLSTLNLSGLLKFREFPE-KTSSRDELLEIHLEGTAIR  114 (189)
Q Consensus        51 ~l~~L~~L~l~~~~~l~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~  114 (189)
                      .++.|++|++++| .++.++   ..+..+++|+.|++++ +.+..+++ .......|+.+++.+|.+.
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcC
Confidence            4455555555553 333332   2233455555555555 34444443 1111224555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=1.4e-05  Score=61.94  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             cchhhhcCCCCcEEEccCCCccCC-----C-CccCCCCCcEEeccCCcCCcc-----Cccccc-CCCCCCEEeccCCCCC
Q 037904           23 CSRLWEEADTLWEVLSDGTDIKEP-----L-SIELLFGLVQLTLNGCKNLEH-----LPRTIS-ALKYLSTLNLSGLLKF   90 (189)
Q Consensus        23 ~~~~~~~l~~L~~L~l~~~~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~-~l~~L~~L~l~~~~~~   90 (189)
                      +.+.++.+++++.|++++|++++.     . .+..+++|+.|++++| .++.     +...+. ...+|+.|++++|. +
T Consensus        19 ~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i   96 (460)
T d1z7xw1          19 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-L   96 (460)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-C
T ss_pred             HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCC-c
Confidence            356677889999999999988743     3 4577889999999985 4442     222332 23579999999974 4


Q ss_pred             cc-----CccccCCCCCCcEEEccCccCCC
Q 037904           91 RE-----FPEKTSSRDELLEIHLEGTAIRG  115 (189)
Q Consensus        91 ~~-----lp~~~~~l~~L~~l~l~~~~~~~  115 (189)
                      +.     ++..+..+++|++|++++|.+.+
T Consensus        97 t~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          97 TGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cccccccccchhhccccccccccccccchh
Confidence            32     45667888999999999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=5.3e-05  Score=58.55  Aligned_cols=61  Identities=21%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             hhhcCCCCcEEEccCCCccCCC------Ccc-CCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCC
Q 037904           26 LWEEADTLWEVLSDGTDIKEPL------SIE-LLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGL   87 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~p------~~~-~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~   87 (189)
                      ++..+++|++|++++|.+++.+      .+. ....|+.|++++|. ++.     ++..+..+++|++|++++|
T Consensus        50 ~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          50 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccc
Confidence            3456667777777777665321      222 22357777777653 332     2344556677777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.18  E-value=5.3e-05  Score=57.22  Aligned_cols=37  Identities=14%  Similarity=0.007  Sum_probs=22.6

Q ss_pred             hhcCCCCcEEEccCCCccCCC------CccCCCCCcEEeccCC
Q 037904           27 WEEADTLWEVLSDGTDIKEPL------SIELLFGLVQLTLNGC   63 (189)
Q Consensus        27 ~~~l~~L~~L~l~~~~l~~~p------~~~~l~~L~~L~l~~~   63 (189)
                      +...++|++|++++|.+....      .+...++|+.|++++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccc
Confidence            344567777777777665431      2344566777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=2.1e-05  Score=53.40  Aligned_cols=82  Identities=15%  Similarity=0.069  Sum_probs=49.5

Q ss_pred             CcEEEccCCCccCCCCccCCCCCcEEeccCCcCCccCcccccCCCCCCEEeccCCCCCccCc---cccCCCCCCcEEEcc
Q 037904           33 LWEVLSDGTDIKEPLSIELLFGLVQLTLNGCKNLEHLPRTISALKYLSTLNLSGLLKFREFP---EKTSSRDELLEIHLE  109 (189)
Q Consensus        33 L~~L~l~~~~l~~~p~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~l~l~  109 (189)
                      .+.|++++.  ...+.+..+..+..++..+ .....++.....+++|+.|++++| .++.++   ..+..+++|+.|+++
T Consensus        24 ~~~Ldls~l--~~~~~l~~~~~~~~l~~~~-~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          24 QQALDLKGL--RSDPDLVAQNIDVVLNRRS-SMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLS   99 (162)
T ss_dssp             SCCBCCCCC--SSCTTTTTTTCCCCTTSHH-HHHHHHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCT
T ss_pred             hCeeecccC--CCCchhhhccchhhcchhh-hHhhhhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccc
Confidence            344555443  2222233333344444333 223333444457899999999994 566554   446678899999999


Q ss_pred             CccCCCCCh
Q 037904          110 GTAIRGLPA  118 (189)
Q Consensus       110 ~~~~~~lp~  118 (189)
                      +|.++++++
T Consensus       100 ~N~i~~l~~  108 (162)
T d1koha1         100 GNELKSERE  108 (162)
T ss_dssp             TSCCCCGGG
T ss_pred             cCccccchh
Confidence            999988765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.71  E-value=0.00043  Score=51.97  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             CCCCcEEEccCCCccCC-----C-CccCCCCCcEEeccCCcCCcc------CcccccCCCCCCEEeccCCCCCc-----c
Q 037904           30 ADTLWEVLSDGTDIKEP-----L-SIELLFGLVQLTLNGCKNLEH------LPRTISALKYLSTLNLSGLLKFR-----E   92 (189)
Q Consensus        30 l~~L~~L~l~~~~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~------lp~~~~~l~~L~~L~l~~~~~~~-----~   92 (189)
                      .+.++.+.+++|.+...     . .+.....|+.|++++|. +..      +...+..+++|+.|++++|. ++     .
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~  234 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSA  234 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-cccccccc
Confidence            44555555555544322     1 23344555555555542 221      12233445555555555532 21     1


Q ss_pred             CccccCCCCCCcEEEccCccCC
Q 037904           93 FPEKTSSRDELLEIHLEGTAIR  114 (189)
Q Consensus        93 lp~~~~~l~~L~~l~l~~~~~~  114 (189)
                      +...+..++.|+.|++++|.+.
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCC
T ss_pred             ccccccccccchhhhhhcCccC
Confidence            2233444555555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.16  E-value=0.0012  Score=44.40  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             hhhcCCCCcEEEccCC-CccCC-----C-CccCCCCCcEEeccCCcCCc-----cCcccccCCCCCCEEeccCCCCCcc-
Q 037904           26 LWEEADTLWEVLSDGT-DIKEP-----L-SIELLFGLVQLTLNGCKNLE-----HLPRTISALKYLSTLNLSGLLKFRE-   92 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~-~l~~~-----p-~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~-   92 (189)
                      +..+.+.|++|+++++ .++.-     - .+...+.|+.|++++|. ++     .+...+...+.|+.|++++|. ++. 
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~   87 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPE   87 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHH
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhh-cchH
Confidence            3445678999999874 45432     1 45667889999999864 33     223345567889999999964 432 


Q ss_pred             ----CccccCCCCCCcEEEccCccCCCCC
Q 037904           93 ----FPEKTSSRDELLEIHLEGTAIRGLP  117 (189)
Q Consensus        93 ----lp~~~~~l~~L~~l~l~~~~~~~lp  117 (189)
                          +-..+...++|++|+++++.+..+.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g  116 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLG  116 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCcc
Confidence                3345777788999999888766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.52  E-value=0.0084  Score=40.10  Aligned_cols=84  Identities=13%  Similarity=0.060  Sum_probs=59.1

Q ss_pred             hhhcCCCCcEEEccCCCccCC-----C-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCCCCcc--
Q 037904           26 LWEEADTLWEVLSDGTDIKEP-----L-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLLKFRE--   92 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~~~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~--   92 (189)
                      .+...+.|++|++++|.+.+-     . .+...+.|+.|++++|. ++.     +-..+...++|+.|+++++. ...  
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n~-~~~~g  116 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQR-QSVLG  116 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCS-SCCCC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCCc-CCCcc
Confidence            355678899999999988753     1 34556889999999974 442     33356677889999998753 222  


Q ss_pred             ------CccccCCCCCCcEEEccCc
Q 037904           93 ------FPEKTSSRDELLEIHLEGT  111 (189)
Q Consensus        93 ------lp~~~~~l~~L~~l~l~~~  111 (189)
                            +.+.+..-++|+.++++.+
T Consensus       117 ~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         117 NQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCccEeeCcCC
Confidence                  3344555678888888654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.09  E-value=0.018  Score=38.20  Aligned_cols=83  Identities=17%  Similarity=0.229  Sum_probs=51.9

Q ss_pred             hhhcCCCCcEEEccC-CCccCC-----C-CccCCCCCcEEeccCCcCCcc-----CcccccCCCCCCEEeccCCCCCc--
Q 037904           26 LWEEADTLWEVLSDG-TDIKEP-----L-SIELLFGLVQLTLNGCKNLEH-----LPRTISALKYLSTLNLSGLLKFR--   91 (189)
Q Consensus        26 ~~~~l~~L~~L~l~~-~~l~~~-----p-~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--   91 (189)
                      +..+.+.|++|++++ +.++.-     - .+...++|+.|++++| .++.     +-..+...++++.+++.+|....  
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            345567888888887 445432     1 4556778888888886 3332     23344566788888888754321  


Q ss_pred             --cCccccCCCCCCcEEEcc
Q 037904           92 --EFPEKTSSRDELLEIHLE  109 (189)
Q Consensus        92 --~lp~~~~~l~~L~~l~l~  109 (189)
                        .+...+...++|+.++++
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECC
T ss_pred             HHHHHHHHHhCccccEEeec
Confidence              233456666778876664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.36  E-value=0.035  Score=36.65  Aligned_cols=83  Identities=13%  Similarity=0.099  Sum_probs=38.5

Q ss_pred             hcCCCCcEEEccCCCccCCC------CccCCCCCcEEeccCCcCCc----cCcccccCCCCCCEEeccCCC-CCc-----
Q 037904           28 EEADTLWEVLSDGTDIKEPL------SIELLFGLVQLTLNGCKNLE----HLPRTISALKYLSTLNLSGLL-KFR-----   91 (189)
Q Consensus        28 ~~l~~L~~L~l~~~~l~~~p------~~~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~~~-~~~-----   91 (189)
                      ...++|++|++++|.++...      .+.....++.+++++|..-.    .+-..+...++|+.++++.+. .++     
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            34556666666666554321      23344556666666543211    122334445556655554321 221     


Q ss_pred             cCccccCCCCCCcEEEccC
Q 037904           92 EFPEKTSSRDELLEIHLEG  110 (189)
Q Consensus        92 ~lp~~~~~l~~L~~l~l~~  110 (189)
                      .+.+.+...+.|+.|++..
T Consensus       123 ~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHhCCCcCEEeCcC
Confidence            1233344455566665544