Citrus Sinensis ID: 037959

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MEDSRRRSGLHDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTLLVLQSASRPSRASTVITSGSSRHLDMSALSEKQLPANGENLKLEGRLVFSTGVFHVC
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHcccccccc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHccccccccEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccEEEcc
medsrrrsglhdfnlaSRKAEESAWRRFEAAEWLENlvgplgvssepseREFISCLRNGLILCnainkinpgtvtkVVENSSyiqsfsresqpppayqyfENVRNFLVAVEElklpafeasdlerdtleagsaAKIVDCILSLKSYHEWkqmscengfykpaKTLLVLQsasrpsrastvitsgssrhldmsalsekqlpangenlkleGRLVFSTGVFHVC
medsrrrsglhdfnlasrkaeESAWRRFEAAEWLENLVgplgvssepSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTLLVLQSASRPSRASTvitsgssrhldMSALSEKQLPANGENLKLEGRLVFSTGVFHVC
MEDSRRRSGLHDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTLLVLQSASRPSRASTVITSGSSRHLDMSALSEKQLPANGENLKLEGRLVFSTGVFHVC
***********************AWRRFEAAEWLENLVGPLGVS*****REFISCLRNGLILCNAINKINPGTVTKVVENSSYIQ**********AYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTLLVL****************************************EGRLVFSTGVFH**
******R****DFN**SRKAEESAWRRFEAAEWLENLVGPLGVSS*PSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYH******************************************************************FSTGVFHVC
**********HDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTLLVLQ**************GSSRHLDMSALSEKQLPANGENLKLEGRLVFSTGVFHVC
**********HDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVE************QPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQM****************************************************NLKLEGRLVFSTGVFHVC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEDSRRRSGLHDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTLLVLQSASRPSRASTVITSGSSRHLDMSALSEKQLPANGENLKLEGRLVFSTGVFHVC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
O81635 987 Kinesin-4 OS=Arabidopsis no no 0.828 0.186 0.426 2e-36
P51911297 Calponin-1 OS=Homo sapien yes no 0.675 0.505 0.251 3e-07
Q9DAW9 330 Calponin-3 OS=Mus musculu yes no 0.603 0.406 0.259 2e-06
P37397 330 Calponin-3 OS=Rattus norv no no 0.603 0.406 0.254 3e-06
Q7YRL2297 Calponin-1 OS=Ovis aries N/A no 0.675 0.505 0.251 3e-06
Q2HJ38297 Calponin-1 OS=Bos taurus yes no 0.675 0.505 0.251 3e-06
Q9GK38297 Calponin-1 OS=Mustela put N/A no 0.675 0.505 0.251 3e-06
Q08091297 Calponin-1 OS=Mus musculu no no 0.675 0.505 0.251 3e-06
Q08290297 Calponin-1 OS=Rattus norv yes no 0.675 0.505 0.251 4e-06
Q08092297 Calponin-1 OS=Sus scrofa yes no 0.662 0.494 0.25 5e-06
>sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 Back     alignment and function desciption
 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 27/211 (12%)

Query: 12  DFNLASRKAEESAWRRFEAAEWLENLVG---PLGVSSEPSEREFISCLRNGLILCNAINK 68
           D  L SRK EES+ RR+EAA WL +++G         EPSE EF   LR+G++LCN +NK
Sbjct: 32  DVGLVSRKVEESSLRRYEAAGWLRDMIGVSNGKDFPGEPSEEEFRLGLRSGIVLCNVLNK 91

Query: 69  INPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTL 128
           +NPG+V+KVVE    +   +  S    A+QYFEN+RNFLVA+EE+ LP+FEASD+E+   
Sbjct: 92  VNPGSVSKVVEAPDDVADGAALS----AFQYFENIRNFLVAIEEMGLPSFEASDMEK--- 144

Query: 129 EAGSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTL--------LVLQSASRPSRASTV 180
             G + +IV+CIL+LKSY EWK +  ENG ++    +        L L+ +S P      
Sbjct: 145 -GGKSIRIVNCILALKSYSEWK-LKGENGPWRYGSNMKHNFGSRKLFLRKSSEP------ 196

Query: 181 ITSGSSRHLDMSALSEKQ-LPANGENLKLEG 210
             S  SR      LS  Q L ++G++  + G
Sbjct: 197 FVSSISRTQSTDMLSTDQPLSSDGDSRSING 227
Microtubule-binding motor protein.
Arabidopsis thaliana (taxid: 3702)
>sp|P51911|CNN1_HUMAN Calponin-1 OS=Homo sapiens GN=CNN1 PE=1 SV=2 Back     alignment and function description
>sp|Q9DAW9|CNN3_MOUSE Calponin-3 OS=Mus musculus GN=Cnn3 PE=2 SV=1 Back     alignment and function description
>sp|P37397|CNN3_RAT Calponin-3 OS=Rattus norvegicus GN=Cnn3 PE=1 SV=1 Back     alignment and function description
>sp|Q7YRL2|CNN1_SHEEP Calponin-1 OS=Ovis aries GN=CNN1 PE=2 SV=1 Back     alignment and function description
>sp|Q2HJ38|CNN1_BOVIN Calponin-1 OS=Bos taurus GN=CNN1 PE=2 SV=1 Back     alignment and function description
>sp|Q9GK38|CNN1_MUSPF Calponin-1 OS=Mustela putorius furo GN=CNN1 PE=2 SV=1 Back     alignment and function description
>sp|Q08091|CNN1_MOUSE Calponin-1 OS=Mus musculus GN=Cnn1 PE=2 SV=1 Back     alignment and function description
>sp|Q08290|CNN1_RAT Calponin-1 OS=Rattus norvegicus GN=Cnn1 PE=2 SV=1 Back     alignment and function description
>sp|Q08092|CNN1_PIG Calponin-1 OS=Sus scrofa GN=CNN1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
297739636 992 unnamed protein product [Vitis vinifera] 0.923 0.206 0.694 2e-76
359481805 977 PREDICTED: kinesin-4-like [Vitis vinifer 0.896 0.203 0.672 2e-70
147770480 972 hypothetical protein VITISV_007863 [Viti 0.869 0.198 0.686 3e-70
317106707 979 JHL06B08.9 [Jatropha curcas] 0.855 0.194 0.683 2e-69
255585490 987 kinesin heavy chain, putative [Ricinus c 0.887 0.199 0.686 2e-69
224090079 924 predicted protein [Populus trichocarpa] 0.828 0.199 0.657 3e-65
449523874 1012 PREDICTED: kinesin-4-like [Cucumis sativ 0.941 0.206 0.595 3e-63
449466095 967 PREDICTED: kinesin-4-like [Cucumis sativ 0.941 0.216 0.595 3e-63
356570460 989 PREDICTED: kinesin-4-like [Glycine max] 0.855 0.192 0.598 1e-59
240255315 922 myosin and kinesin motor and CH domain-c 0.891 0.214 0.610 2e-59
>gi|297739636|emb|CBI29818.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/213 (69%), Positives = 166/213 (77%), Gaps = 8/213 (3%)

Query: 11  HDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKIN 70
           HD NLASRKAEE+AWRRF+AA WLE LVGP+GVS+ PSEREF+SCLRNGLILCNAINKI+
Sbjct: 8   HDMNLASRKAEEAAWRRFQAAGWLETLVGPIGVSTHPSEREFVSCLRNGLILCNAINKIH 67

Query: 71  PGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEA 130
           PG+V K+VEN S  QS + ESQP PAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEA
Sbjct: 68  PGSVPKIVENHSSSQSLTWESQPLPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEA 127

Query: 131 GSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTLLVLQSASR-PSRASTVITSGSSRHL 189
           GSAAK+VDCIL LKSYHEWKQM   NG+YK  ++ +V+ SA+R  S AS    S S R L
Sbjct: 128 GSAAKVVDCILVLKSYHEWKQMGGGNGYYKHVRSPMVVHSANRVNSTASAANPSDSCRRL 187

Query: 190 DMSALSEKQLPANGENLKLEGRLVFSTGVFHVC 222
           DMS       P +GE  KLE  +V    VF  C
Sbjct: 188 DMSVTP----PLDGEARKLEDLIV---SVFAEC 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359481805|ref|XP_002278603.2| PREDICTED: kinesin-4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147770480|emb|CAN75891.1| hypothetical protein VITISV_007863 [Vitis vinifera] Back     alignment and taxonomy information
>gi|317106707|dbj|BAJ53207.1| JHL06B08.9 [Jatropha curcas] Back     alignment and taxonomy information
>gi|255585490|ref|XP_002533437.1| kinesin heavy chain, putative [Ricinus communis] gi|223526711|gb|EEF28944.1| kinesin heavy chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224090079|ref|XP_002308934.1| predicted protein [Populus trichocarpa] gi|222854910|gb|EEE92457.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449523874|ref|XP_004168948.1| PREDICTED: kinesin-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449466095|ref|XP_004150762.1| PREDICTED: kinesin-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356570460|ref|XP_003553405.1| PREDICTED: kinesin-4-like [Glycine max] Back     alignment and taxonomy information
>gi|240255315|ref|NP_187642.4| myosin and kinesin motor and CH domain-containing protein [Arabidopsis thaliana] gi|332641369|gb|AEE74890.1| myosin and kinesin motor and CH domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
TAIR|locus:2076289 922 AT3G10310 [Arabidopsis thalian 0.932 0.224 0.591 6e-60
TAIR|locus:2061992 983 AT2G47500 [Arabidopsis thalian 0.932 0.210 0.408 1.9e-33
TAIR|locus:2148543 987 ATK4 "kinesin 4" [Arabidopsis 0.851 0.191 0.432 4.1e-33
TAIR|locus:2195316 1010 AT1G09170 [Arabidopsis thalian 0.558 0.122 0.463 8.5e-29
TAIR|locus:2101645 1087 KP1 "kinesin-like protein 1" [ 0.653 0.133 0.461 6e-24
UNIPROTKB|B4DUX6277 CNN1 "cDNA FLJ59763, highly si 0.738 0.592 0.267 6.6e-05
UNIPROTKB|P51911297 CNN1 "Calponin-1" [Homo sapien 0.738 0.552 0.267 7.7e-05
TAIR|locus:2026639 1071 AT1G63640 [Arabidopsis thalian 0.513 0.106 0.280 8.3e-05
UNIPROTKB|I3LUJ5309 CNN2 "Calponin-2" [Sus scrofa 0.671 0.482 0.258 0.00043
UNIPROTKB|E2RB32297 CNN1 "Uncharacterized protein" 0.738 0.552 0.267 0.00052
TAIR|locus:2076289 AT3G10310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 618 (222.6 bits), Expect = 6.0e-60, P = 6.0e-60
 Identities = 126/213 (59%), Positives = 162/213 (76%)

Query:     8 SGLHDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAIN 67
             +GLH+FNLASR+AEE+A RRF+A +WL+++VG LG+ ++PSE+EFISCLRNG+ILCNAIN
Sbjct:     3 TGLHEFNLASRRAEEAAARRFQAVQWLKSVVGQLGIPNQPSEKEFISCLRNGMILCNAIN 62

Query:    68 KINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDT 127
             KI+PG V+KVVEN SY+     E Q PPAYQYFENVRNFLVA+E L+LP FEASDLE+D 
Sbjct:    63 KIHPGAVSKVVENYSYLNG---EYQLPPAYQYFENVRNFLVALETLRLPGFEASDLEKDN 119

Query:   128 LEAGSAAKIVDCILSLKSYHEWKQMSCENGFYKPAKTLLVLQSASRPSRASTVITSGSSR 187
             LE+GS  K+VDCIL LK+YHE K  S  NG YK  KT     SA++     T+  S +SR
Sbjct:   120 LESGSVTKVVDCILGLKAYHECKLPSNGNGLYKHVKTPTFQLSATKIH--PTLSASKTSR 177

Query:   188 HLDMSALSEKQLPANGENLKLEG-RLVFSTGVF 219
             HLDMS++ E+    +GE+ KL+G   +F+  +F
Sbjct:   178 HLDMSSVRERNDCTDGESDKLKGIAKLFADHIF 210
GO:0003777 "microtubule motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2061992 AT2G47500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148543 ATK4 "kinesin 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195316 AT1G09170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B4DUX6 CNN1 "cDNA FLJ59763, highly similar to Calponin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P51911 CNN1 "Calponin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2026639 AT1G63640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|I3LUJ5 CNN2 "Calponin-2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB32 CNN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025619001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (723 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 1e-08
smart00033101 smart00033, CH, Calponin homology domain 5e-08
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 2e-06
COG5261 1054 COG5261, IQG1, Protein involved in regulation of c 9e-04
COG5199178 COG5199, SCP1, Calponin [Cytoskeleton] 0.001
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information 
 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 21/117 (17%)

Query: 29  EAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFS 88
           E   W+  ++G  G     +   F + L++G+ LC  +N ++P  + K   N   +  F 
Sbjct: 5   ELLRWINKVLGEYG---PVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINP--LSRFK 59

Query: 89  RESQPPPAYQYFENVRNFLVAVEELKLPA--FEASDLERDTLEAGSAAKIVDCILSL 143
           R           EN+   L   E+L +P   F+A DL  D    G    ++  + SL
Sbjct: 60  RL----------ENINLALNFAEKLGVPVVNFDAEDLVED----GDEKLVLGLLWSL 102

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
KOG2046193 consensus Calponin [Cytoskeleton] 99.93
COG5199178 SCP1 Calponin [Cytoskeleton] 99.84
cd00014107 CH Calponin homology domain; actin-binding domain 99.82
COG5261 1054 IQG1 Protein involved in regulation of cellular mo 99.78
KOG2128 1401 consensus Ras GTPase-activating protein family - I 99.75
smart00033103 CH Calponin homology domain. Actin binding domains 99.73
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.67
KOG2996 865 consensus Rho guanine nucleotide exchange factor V 99.64
KOG0532722 consensus Leucine-rich repeat (LRR) protein, conta 99.63
KOG0046 627 consensus Ca2+-binding actin-bundling protein (fim 98.65
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 98.42
KOG0046627 consensus Ca2+-binding actin-bundling protein (fim 98.18
PF0639589 CDC24: CDC24 Calponin; InterPro: IPR010481 This is 97.44
KOG0517 2473 consensus Beta-spectrin [Cytoskeleton] 96.69
COG5069 612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 95.54
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 90.96
KOG3631365 consensus Alpha-parvin and related focal adhesion 90.08
>KOG2046 consensus Calponin [Cytoskeleton] Back     alignment and domain information 
Probab=99.93  E-value=1.1e-25  Score=191.08  Aligned_cols=107  Identities=34%  Similarity=0.565  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhH
Q 037959           24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENV  103 (222)
Q Consensus        24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI  103 (222)
                      ...+.++++||+.++.. ..   +...+|.+.|+||+|||+|+|+|+|+++++++.             +...|.++|||
T Consensus        24 ~~~~~el~~WI~~~~~~-~~---~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~-------------s~~~f~qmEnI   86 (193)
T KOG2046|consen   24 DELEKELREWIENVVLT-EL---PARGDFQDLLKDGVILCKLINKLYPGVVKKINE-------------SKMAFVQMENI   86 (193)
T ss_pred             HHHHHHHHHHHHHhhcc-CC---CcccCHHHHHcchHHHHHHHHHhCcCccccccc-------------ccccHHHHHHH
Confidence            56788999999997443 22   235799999999999999999999988888763             26889999999


Q ss_pred             HHHHHHHHHCCCC---CccCCCCcccccccCChhHHHHHHHHHHHhHHHhh
Q 037959          104 RNFLVAVEELKLP---AFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQ  151 (222)
Q Consensus       104 ~~FL~ac~~lGv~---~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~k~  151 (222)
                      ++||.||+.+||+   .|++.||    ||+||+.+|+.||++|++.+..+.
T Consensus        87 s~Fi~a~~~ygv~~~d~FqtvDL----fE~kd~~~V~vtL~aLa~~a~~~~  133 (193)
T KOG2046|consen   87 SNFIKAAKKYGVPEVDLFQTVDL----FEGKDMAQVQVTLLALARKAQKKG  133 (193)
T ss_pred             HHHHHHHHhcCCChhhccccccc----ccCCCHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999   5999999    999999999999999999998774

>COG5199 SCP1 Calponin [Cytoskeleton] Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton] Back     alignment and domain information
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain Back     alignment and domain information
>KOG0517 consensus Beta-spectrin [Cytoskeleton] Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
1wyp_A136 Solution Structure Of The Ch Domain Of Human Calpon 2e-07
1h67_A108 Nmr Structure Of The Ch Domain Of Calponin Length = 8e-06
1wyn_A146 Solution Structure Of The Ch Domain Of Human Calpon 6e-05
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1 Length = 136 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 26  RRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQ 85
           R  E  EW+E      GV+       F+  L++G+ILC  INK+ PG+V K+ E++    
Sbjct: 18  REQELREWIE------GVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQ--- 68
Query: 86  SFSRESQPPPAYQYFENVRNFLVAVEELKLP---AFEASDLERDTLEAGSAAKIVDCILS 142
                      +   EN+ NF+ A+ +  +     FEA+DL  +T    +  ++   +L+
Sbjct: 69  ----------NWHQLENIGNFIKAITKYGVKPHDIFEANDLFENT----NHTQVQSTLLA 114
Query: 143 LKSYHEWKQMSCENGFYKPA 162
           L S  + K      G   P+
Sbjct: 115 LASMAKTKGNKVNVGVSGPS 134
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin Length = 108 Back     alignment and structure
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2 Length = 146 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 3e-26
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 1e-25
1ujo_A144 Transgelin; CH domain, actin binding, structural g 2e-25
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 9e-25
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 8e-24
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 1e-23
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 2e-23
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 2e-23
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 1e-22
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 2e-20
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 9e-18
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 7e-05
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 121 Back     alignment and structure
 Score = 97.3 bits (242), Expect = 3e-26
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 23  SAWRRFEAAEWLENLVG--PLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVEN 80
            +    +   WL +L        +    E    S L+NG++LC  IN++ PG+V K    
Sbjct: 4   GSSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCL- 62

Query: 81  SSYIQSFSRESQPPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCI 140
                       P        N+ +FL     L++  F+  DL        + +K++  +
Sbjct: 63  -----------DPQTEADCINNINDFLKGCATLQVEIFDPDDLY----SGVNFSKVLSTL 107

Query: 141 LSLKSYHEWKQMS 153
           L++    E    S
Sbjct: 108 LAVNKATESGPSS 120
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Length = 108 Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Length = 144 Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203 Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193 Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190 Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 136 Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 155 Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159 Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Length = 126 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 100.0
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 100.0
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 100.0
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 100.0
1ujo_A144 Transgelin; CH domain, actin binding, structural g 99.98
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 99.98
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 99.97
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 99.97
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 99.97
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 99.96
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 99.96
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 99.89
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 99.68
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 99.5
1pxy_A 506 Fimbrin-like protein; calponin homology, F-actin-b 99.49
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 99.37
1rt8_A 513 Fimbrin; filamentous actin binding domain (ABD), c 99.35
2qjz_A123 Microtubule-associated protein RP/EB family member 99.35
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 99.32
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 99.32
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 99.24
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 99.23
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 99.16
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 99.13
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.08
3hoc_A272 Filamin-A; calponin homology domain, actin binding 99.04
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 98.85
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 98.81
4b7l_A 347 Filamin-B; structural protein, FR 1 filamin hinge 98.66
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 98.44
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 98.21
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 98.05
1wyl_A116 NEDD9 interacting protein with calponin homology a 98.0
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 97.85
2d88_A121 Protein mical-3; all alpha, calponin homology doma 97.82
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 97.8
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 97.71
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 97.59
1bhd_A118 Utrophin; calponin homology, actin binding, struct 97.54
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 97.52
2r8u_A268 Microtubule-associated protein RP/EB family member 97.51
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 97.42
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 97.38
3hoc_A272 Filamin-A; calponin homology domain, actin binding 97.26
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 97.23
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 97.08
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 97.08
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 96.71
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 96.28
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 93.93
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
Probab=100.00  E-value=1.5e-33  Score=232.55  Aligned_cols=115  Identities=25%  Similarity=0.480  Sum_probs=105.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCc
Q 037959           17 SRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPA   96 (222)
Q Consensus        17 ~rka~e~~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~   96 (222)
                      ..+||||++|++++++||++++|. ++|   +.++|.++|+||||||+|+|+++|++|++|+..            +..+
T Consensus         3 ~~~a~eyl~~~~e~~~WIe~~l~~-~l~---~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~------------~~~~   66 (159)
T 1p2x_A            3 TLQAYDYLCRVDEAKKWIEECLGT-DLG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYS------------NELQ   66 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTS-CCC---CGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCC------------SSCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCC-CCC---ChHHHHHHHcchHHHHHHHHHhCCCCccccccc------------cCCc
Confidence            568999999999999999999998 675   467999999999999999999999999999752            2568


Q ss_pred             chhhhhHHHHHHHHHHCCCC---CccCCCCcccccccCChhHHHHHHHHHHHhHHHhh
Q 037959           97 YQYFENVRNFLVAVEELKLP---AFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQ  151 (222)
Q Consensus        97 F~~~ENI~~FL~ac~~lGv~---~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~k~  151 (222)
                      |+++|||++||+||+++|||   +|++.||    ||++|+++|+.||++|++++..++
T Consensus        67 f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL----~e~kn~~~Vi~~L~aL~~~~~~~g  120 (159)
T 1p2x_A           67 FRHSDNINKFLDFIHGIGLPEIFHFELTDI----YEGKNLPKVIYCIHALSYFLSMQD  120 (159)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCGGGCCCHHHH----SSCSCHHHHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHcCCCcccccCHHHH----HhcCCHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999   5999999    999999999999999999987653
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d1h67a_108 a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T 7e-22
d1ujoa_144 a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta 9e-22
d1p2xa_159 a.40.1.1 (A:) Ras GTPase-activating-like protein r 9e-15
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108 Back     information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 84.2 bits (208), Expect = 7e-22
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 26/125 (20%)

Query: 29  EAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFS 88
           +   W+E   G            F+  L++G+ILC  INK+ PG+V KV +         
Sbjct: 7   QLRVWIEGATG------RRIGDNFMDGLKDGVILCELINKLQPGSVQKVND--------- 51

Query: 89  RESQPPPAYQYFENVRNFLVAVEELKLPA---FEASDLERDTLEAGSAAKIVDCILSLKS 145
               P   +   EN+ NFL A++   +     FEA+DL     E  +  ++   +++L S
Sbjct: 52  ----PVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDL----FENTNHTQVQSTLIALAS 103

Query: 146 YHEWK 150
             + K
Sbjct: 104 QAKTK 108
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144 Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 99.97
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 99.97
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 99.97
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.33
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.16
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.07
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 98.9
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.85
d1pxya_ 500 Fimbrin (Plastin), actin-crosslinking domain {Thal 98.81
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 98.49
d1rt8a_ 505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 98.43
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 98.33
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 98.28
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 98.05
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 98.03
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 98.0
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 97.96
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.3e-32  Score=217.29  Aligned_cols=114  Identities=25%  Similarity=0.392  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHhhCCCCCC-CCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhHH
Q 037959           26 RRFEAAEWLENLVGPLGVS-SEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVR  104 (222)
Q Consensus        26 r~~e~~~WI~~llg~~~lp-~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI~  104 (222)
                      .++++++||++++|+ .+. .++..++|+++|+||+|||+|+|+|+|++|++++....         .+..+|+++|||+
T Consensus        10 ~e~~~~~WI~~~~g~-~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~~~~~~~~---------~~~~~f~~~eNI~   79 (144)
T d1ujoa_          10 LEERLVEWIVVQCGP-DVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN---------PPSMVFKQMEQVA   79 (144)
T ss_dssp             HHHHHHHHHHHHHCT-TTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSS---------CCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-ccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCCCccccCC---------CcchhHHHHHHHH
Confidence            478999999999999 442 34567899999999999999999999999988764222         2367899999999


Q ss_pred             HHHHHHHHCCCC---CccCCCCcccccccCChhHHHHHHHHHHHhHHHhhcc
Q 037959          105 NFLVAVEELKLP---AFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQMS  153 (222)
Q Consensus       105 ~FL~ac~~lGv~---~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~k~~~  153 (222)
                      +||+||+++||+   +|+++||    ||++|+++|+.||++|+|++.+++.+
T Consensus        80 ~FL~~c~~~Gv~~~~lF~~~DL----~e~kn~~~Vi~cL~~L~r~a~~~~~~  127 (144)
T d1ujoa_          80 QFLKAAEDYGVIKTDMFQTVDL----YEGKDMAAVQRTLMALGSLAVTKNDG  127 (144)
T ss_dssp             HHHHHHHHHTCCSSSCCCHHHH----HTCSCHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHhCCCcccccchhHH----hhcCCHHHHHHHHHHHHHHHHHccCC
Confidence            999999999999   5999999    99999999999999999999988643
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure