Citrus Sinensis ID: 037964
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 202 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W474 | 907 | Probable disease resistan | yes | no | 0.920 | 0.205 | 0.309 | 3e-12 | |
| Q9FJB5 | 901 | Disease resistance RPP8-l | no | no | 0.945 | 0.211 | 0.255 | 7e-11 | |
| P0DI18 | 1049 | Probable disease resistan | no | no | 0.440 | 0.084 | 0.404 | 8e-11 | |
| P0DI17 | 1049 | Probable disease resistan | no | no | 0.440 | 0.084 | 0.404 | 8e-11 | |
| Q8W4J9 | 908 | Disease resistance protei | no | no | 0.945 | 0.210 | 0.273 | 2e-10 | |
| Q9FJK8 | 908 | Probable disease resistan | no | no | 0.440 | 0.098 | 0.382 | 5e-10 | |
| P0C8S1 | 906 | Probable disease resistan | no | no | 0.440 | 0.098 | 0.370 | 2e-09 | |
| Q9XIF0 | 906 | Putative disease resistan | no | no | 0.346 | 0.077 | 0.442 | 3e-09 | |
| P59584 | 910 | Disease resistance protei | no | no | 0.950 | 0.210 | 0.255 | 6e-09 | |
| P0DI16 | 1017 | Probable disease resistan | no | no | 0.376 | 0.074 | 0.464 | 1e-06 |
| >sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4 | Back alignment and function desciption |
|---|
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 9 TPEDIWKMHKLRHLNFGYIKLHAHPGKYCS-----ALENLNFISALHLSSCTRDILGRLP 63
P+ +MH+LR+L + LH H S LE L + S H S ++D+ G +
Sbjct: 648 VPDVFMRMHELRYLK---LPLHMHKKTRLSLRNLVKLETLVYFSTWH--SSSKDLCG-MT 701
Query: 64 NLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVN--------ESNMLGILQI-----DI 110
L +L I LS S+ LR L+ L +V E +L + + D+
Sbjct: 702 RLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLDL 761
Query: 111 ---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPC 167
+ FP LT + L+ L++DPMP LEKL HL + L + S+ R++ C GGFP
Sbjct: 762 YMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGGFPQ 821
Query: 168 LKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
LK L + + +EW + + LE L I C
Sbjct: 822 LKKLEIVGLNKWEEWLVEEGSMPLLETLSILDC 854
|
Possible disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 24/215 (11%)
Query: 8 HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQS 67
H P + +M +LR+L+ + +H L NL ++ + L R+ L+
Sbjct: 632 HVPNVLKEMLELRYLSLP-LDMHDKTKLELGDLVNLEYLWCFSTQHSSVTDLLRMTKLRF 690
Query: 68 LKI-FEDLSHYQSVLSKSLCELRCLDSLKLVNES-----NMLGILQIDIA---------- 111
+ F + +++ LS SL + R L++L + + +G +D
Sbjct: 691 FGVSFSERCTFEN-LSSSLRQFRKLETLSFIYSRKTYMVDYVGEFVLDFIHLKKLSLGVH 749
Query: 112 ------EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGF 165
++Q P + H+ L +++DPMP LEKL HL ++L++ +F R++ C GGF
Sbjct: 750 LSKIPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGF 809
Query: 166 PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
P L+ L + L+EW + + L LII+ C
Sbjct: 810 PQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSC 844
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%)
Query: 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171
E FP LT L L + +L++DPMP LEKL L L+L++ SFS +++ C SGGFP L+ L
Sbjct: 772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKL 831
Query: 172 HLKSMLWLDEWTMGTKATWKLEHLIINPC 200
+K + ++W + + L L I C
Sbjct: 832 SIKGLEEWEDWKVEESSMPVLHTLDIRDC 860
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%)
Query: 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171
E FP LT L L + +L++DPMP LEKL L L+L++ SFS +++ C SGGFP L+ L
Sbjct: 772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKL 831
Query: 172 HLKSMLWLDEWTMGTKATWKLEHLIINPC 200
+K + ++W + + L L I C
Sbjct: 832 SIKGLEEWEDWKVEESSMPVLHTLDIRDC 860
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 8 HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQS 67
H P + +M +LR+L+ +K+ L NL ++ + L R+ L+
Sbjct: 640 HVPNVLKEMIQLRYLSLP-LKMDDKTKLELGDLVNLEYLYGFSTQHSSVTDLLRMTKLRY 698
Query: 68 LKI-FEDLSHYQSVLSKSLCELRCLDSLKLVN--ESNMLGIL------------QIDIA- 111
L + + ++++ LS SL ELR L++L + E+ M+ + Q+ +A
Sbjct: 699 LAVSLSERCNFET-LSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAV 757
Query: 112 -------EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGG 164
++QFP L HL L +++DPMP LEKL HL ++L + +F ++ C GG
Sbjct: 758 RMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGG 817
Query: 165 FPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
FP L + + L+EW + + L L I+ C
Sbjct: 818 FPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDC 853
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171
++QFP L H+ L + +K+DPMP LEKL HL + L +F R++ C GGFP L L
Sbjct: 765 QHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCAL 824
Query: 172 HLKSMLWLDEWTMGTKATWKLEHLIINPC 200
+ L+EW + + L L I+ C
Sbjct: 825 GISGESELEEWIVEEGSMPCLRTLTIHDC 853
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171
+Y+FP L H+ L ++++DPMP LEKL HL + L +F R++ C GGFP L L
Sbjct: 763 QYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQLLAL 822
Query: 172 HLKSMLWLDEWTMGTKATWKLEHLIINPC 200
+ L EW + + L L I+ C
Sbjct: 823 KMSYKKELVEWRVEEGSMPCLRTLTIDNC 851
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 115 FPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLK 174
FP LT +SL L++DPMPTLEKL L V+ L N++ R++ C GGFP L L +
Sbjct: 751 FPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIW 810
Query: 175 SMLWLDEWTM 184
+ L+EW +
Sbjct: 811 GLDALEEWIV 820
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 8 HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQS 67
H P + +M +LR+L+ +K+ L NL ++ + L R+ L++
Sbjct: 642 HVPNVLKEMIELRYLSIP-VKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRN 700
Query: 68 LKIFEDLSHYQSVLSKSLCELRCLDSLKLVNES-----NMLGILQID------------- 109
L + + LS SL ELR L++L ++ + +G +D
Sbjct: 701 LTVSLSERYNFKTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVVR 760
Query: 110 ----IAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGF 165
++QFP L H+ L +++DPMP LEKL HL ++L+ +F R++ C GF
Sbjct: 761 MSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVCSKDGF 820
Query: 166 PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
L L + L++W + + L L I+ C
Sbjct: 821 TQLCALDISKQSELEDWIVEEGSMPCLRTLTIHDC 855
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI16|DRL44_ARATH Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 111 AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKF 170
E FP LT L L + +L++DPMP LEKL L L+L SFS +K+ C SGGFP L+
Sbjct: 763 TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQR 822
Query: 171 LHLKSMLWLDEWTMGTKATWKLEH 194
L S+L L+EW WK+E
Sbjct: 823 L---SLLKLEEW-----EDWKVEE 838
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 202 | ||||||
| 339431373 | 968 | putative CC-NBS-LRR protein [Malus x dom | 0.945 | 0.197 | 0.324 | 4e-15 | |
| 255577231 | 1394 | ATP binding protein, putative [Ricinus c | 0.975 | 0.141 | 0.290 | 2e-13 | |
| 296081343 | 1312 | unnamed protein product [Vitis vinifera] | 0.930 | 0.143 | 0.309 | 2e-13 | |
| 359495931 | 1359 | PREDICTED: probable disease resistance p | 0.930 | 0.138 | 0.309 | 2e-13 | |
| 359496848 | 856 | PREDICTED: disease resistance RPP8-like | 0.960 | 0.226 | 0.314 | 4e-13 | |
| 147795782 | 1450 | hypothetical protein VITISV_023621 [Viti | 0.930 | 0.129 | 0.309 | 4e-13 | |
| 359491404 | 922 | PREDICTED: probable disease resistance R | 0.970 | 0.212 | 0.308 | 2e-12 | |
| 291464699 | 255 | disease resistance protein RPP8 [Arabido | 0.856 | 0.678 | 0.333 | 2e-12 | |
| 147766035 | 902 | hypothetical protein VITISV_038742 [Viti | 0.960 | 0.215 | 0.305 | 3e-12 | |
| 297743817 | 1083 | unnamed protein product [Vitis vinifera] | 0.955 | 0.178 | 0.324 | 6e-12 |
| >gi|339431373|gb|AEJ72566.1| putative CC-NBS-LRR protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 28/219 (12%)
Query: 8 HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQS 67
P IWKM +LRHL +A L NL + + C + L +L NL+
Sbjct: 702 QIPNVIWKMERLRHLYLPKWCGNAVDKLQLGNLINLQTLVNFPANKCDVEDLRKLTNLRK 761
Query: 68 LKIFEDLSHYQS---VLSKSLCELRCLDSLKLVNES-----NMLGILQI----------- 108
L + D H++S + S L CL+SL L +E+ +++ + Q+
Sbjct: 762 L-VLNDPKHFKSLVIIFSPQSRTLSCLESLSLTSETLSFPDDVVDVRQLMLSCRRLQKLH 820
Query: 109 ------DIAEY-QFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACC 161
+ EY QFP +L L+L + L++DPMPTLE+LP+L +L Q F+ +K+ C
Sbjct: 821 VEGRIEKLPEYHQFPPNLAKLTLWGSNLEEDPMPTLERLPNLRILSGWQ-MFAGKKMVCS 879
Query: 162 SGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
+ GFP LK L L+ L++WTM A L L I+ C
Sbjct: 880 NQGFPKLKSLLLRGFSNLEDWTMEEGAMPSLCRLEISSC 918
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577231|ref|XP_002529498.1| ATP binding protein, putative [Ricinus communis] gi|223531056|gb|EEF32908.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 34/231 (14%)
Query: 4 SFIDHTPEDIWKMHKLRHLNFG--YIKLHAHPGKYCSALENLNFISALHLS--SCTRDIL 59
++I P IWKM +LRHL Y H + S+LE L + + + S + L
Sbjct: 1041 TYISKLPHSIWKMQRLRHLYLSESYRSRFEHKPRNVSSLEELQTLWGVFVDERSPVKHGL 1100
Query: 60 GRLPNLQSLKI----------------------FEDLSHYQSVLSKSLCE--------LR 89
+L NL+ L + L H QS+ +S E L+
Sbjct: 1101 DKLENLRKLGLACRTMLSQKKQMLLQIDAIADWIRKLKHLQSLRLRSFDEHGEAWFLPLK 1160
Query: 90 CLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLK 149
L L ++ N+LG LQ+ ++ P+ LT+L+L+ +++K+DPM L+ L +L LKL
Sbjct: 1161 HLSELGNLSSMNLLGRLQLKFVKFGVPKGLTYLTLSASRMKEDPMQILQYLHNLKELKLL 1220
Query: 150 QNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
NS+ +K+ C G F L+ L + + L +WT+ A +L L I C
Sbjct: 1221 SNSYLGKKMHCPLGSFLQLQVLKMWKLEHLQQWTVENGALRQLRELEIRFC 1271
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081343|emb|CBI17689.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAH----PGKYCSALENLNFISALHLSSCT--RDILGRLP 63
P IW M +LR L Y+ H P + L + L + T D L +
Sbjct: 1062 PSPIWNMQQLRQL---YLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVTDGLDQFI 1118
Query: 64 NLQSLKIFEDL-SHYQSVLSKSLCELRCLDSLKL--VNESN------------------- 101
NL+ L + L S Q + + + +L L+SL+L ++E N
Sbjct: 1119 NLRKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCL 1178
Query: 102 -MLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160
+LG L+ +FP SL L+L+ ++L++DPM TL+KLP+L VL+ NS+ + + C
Sbjct: 1179 YLLGRLKNPSVGSEFPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGC 1238
Query: 161 CSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
SGGFP L+ L L + L+EW + A L L I C
Sbjct: 1239 SSGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSC 1278
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495931|ref|XP_003635117.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAH----PGKYCSALENLNFISALHLSSCT--RDILGRLP 63
P IW M +LR L Y+ H P + L + L + T D L +
Sbjct: 1109 PSPIWNMQQLRQL---YLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVTDGLDQFI 1165
Query: 64 NLQSLKIFEDL-SHYQSVLSKSLCELRCLDSLKL--VNESN------------------- 101
NL+ L + L S Q + + + +L L+SL+L ++E N
Sbjct: 1166 NLRKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCL 1225
Query: 102 -MLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160
+LG L+ +FP SL L+L+ ++L++DPM TL+KLP+L VL+ NS+ + + C
Sbjct: 1226 YLLGRLKNPSVGSEFPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGC 1285
Query: 161 CSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
SGGFP L+ L L + L+EW + A L L I C
Sbjct: 1286 SSGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSC 1325
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 22/216 (10%)
Query: 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSA--LENLNFISALHLSSCTRDILGRLP 63
+ P +W M LRHL + HP + S L+ L+ +S ++ + D+LG+L
Sbjct: 593 VSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVS-IYGNQWIPDLLGKLT 651
Query: 64 NLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKL--------------VNESNMLGI-LQI 108
NL+ L I + LS+ L +L L +L+L +N+ N+ + L
Sbjct: 652 NLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSG 711
Query: 109 DIAEYQFPQ----SLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGG 164
I + PQ +LT + L N+ L D L KLP+L +LKL NSF +++ C + G
Sbjct: 712 PIEKLPDPQEIQPNLTKIILENSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCSASG 771
Query: 165 FPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
FP L L L ++ L+EW + A L HLII+ C
Sbjct: 772 FPKLHGLELSELVNLEEWRVDDGAMPSLRHLIIDHC 807
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795782|emb|CAN61050.1| hypothetical protein VITISV_023621 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 102/220 (46%), Gaps = 32/220 (14%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAH----PGKYCSALENLNFISALHLSSCT--RDILGRLP 63
P IW M +LR L Y+ H P + L + L + T D L +
Sbjct: 1109 PSPIWNMQQLRQL---YLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVTDGLDQFI 1165
Query: 64 NLQSLKIFEDL-SHYQSVLSKSLCELRCLDSLKL--VNESN------------------- 101
NL+ L + L S Q + + + +L L+SL+L ++E N
Sbjct: 1166 NLRKLGLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCL 1225
Query: 102 -MLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160
+LG L+ FP SL L+L+ ++L++DPM TL+KLP+L VL+ NS+ + + C
Sbjct: 1226 YLLGRLKNPSVGSXFPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGC 1285
Query: 161 CSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
SGGFP L+ L L + L+EW + A L L I C
Sbjct: 1286 SSGGFPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSC 1325
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 28/224 (12%)
Query: 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISAL--HLSSCTRDILGR 61
+ ++ P IWKM KLRHL F ++ A ++L NL + + + +S + L +
Sbjct: 635 TLLNPIPIVIWKMQKLRHLYFNELEEMAVNPPTDASLANLQTLHGICINQTSYVENGLSK 694
Query: 62 LPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI----------- 110
L NL+ L + DL ++ + K + L+ LKL M + I
Sbjct: 695 LTNLRELGLHGDLLLHEEAIGKWIFSSERLECLKLHTRDVMGDFAKNAIPKLNFSSHPHL 754
Query: 111 --------------AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR 156
AEY FPQ+LT LSL + L +DPM LE L L VLKLK +++ +
Sbjct: 755 IKLHLKGFMAKLFDAEY-FPQNLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGK 813
Query: 157 KLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
++ C GGFP L FL L + ++ W + A +L L I C
Sbjct: 814 EMICSCGGFPQLHFLKLSFLNTVERWRIEDGAMGRLRQLEIIEC 857
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|291464699|gb|ADE05810.1| disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea] | Back alignment and taxonomy information |
|---|
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 28/201 (13%)
Query: 8 HTPEDIWKMHKLRHLN---FGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRLPN 64
H P + +M +LR+L+ F + K G + LE L S H + +D+L R+
Sbjct: 55 HVPNVLKEMLELRYLSLPLFMHDKTKLELGDLVN-LERLRAFSTQH--NNVKDLL-RMTK 110
Query: 65 LQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVN--ESNM---LGILQIDIA-------- 111
L+SL I S LS SL ELR L+ L + E+ M +G +D
Sbjct: 111 LRSLAISLSESFTFETLSSSLRELRNLEMLDFFSLPETYMVDYMGEFVLDFIHLKELVLA 170
Query: 112 --------EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSG 163
++QFP L H+ L ++++DPMPTLEKL HL ++L+ ++F RK+ C G
Sbjct: 171 VRMSKIPDQHQFPPHLEHIDLYYCRMEEDPMPTLEKLLHLNSVELRHHAFVGRKMVCSKG 230
Query: 164 GFPCLKFLHLKSMLWLDEWTM 184
GFP L L++ L L+EW +
Sbjct: 231 GFPRLCALNISEELELEEWIV 251
|
Source: Arabidopsis lyrata subsp. petraea Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 22/216 (10%)
Query: 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSA--LENLNFISALHLSSCTRDILGRLP 63
+ P +W M LRHL + HP + S L+ L+ +S ++ + D+LG+L
Sbjct: 639 VSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVS-IYGNQWIPDLLGKLT 697
Query: 64 NLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKL--------------VNESNMLGI-LQI 108
NL+ L I + LS+ L +L L +L+L +N+ N+ + L
Sbjct: 698 NLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSG 757
Query: 109 DIAEYQFPQ----SLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGG 164
I + PQ +LT + L + L D L KLP+L +LKL NSF +++ C + G
Sbjct: 758 PIEKLPDPQEIQPNLTKIILEKSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCSASG 817
Query: 165 FPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
FP L L L ++ L+EW + A L HL+I+ C
Sbjct: 818 FPKLHGLELSELVNLEEWRVDDGAMPSLRHLVIDHC 853
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743817|emb|CBI36700.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 38/231 (16%)
Query: 6 IDHTPEDIWKMHKLRHLNFG---YIKLHAHPGKYCSALENLNFISALHLSSCT--RDILG 60
I P IWK+ KLRHL KL G ++L L + L + T RD L
Sbjct: 835 ISTLPNSIWKLQKLRHLYLSESYRSKLMLRHG--TNSLTTLQTLCGLFIDEETLVRDCLD 892
Query: 61 RLPNLQSLKIFEDLSHYQSVLSKSL-------CELRCLDSLKL--VNESN---------- 101
RL +++ L + +S Q +S SL +L L SL+L +++SN
Sbjct: 893 RLLDIKKLGL--TMSSKQEAVSLSLQAVADWISKLNQLHSLRLKSIDKSNQPWDLELKPL 950
Query: 102 ----------MLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQN 151
+LG L+ QFP SL L+L+ + L +DPM +L+KLP+L LKL
Sbjct: 951 VGHVNLSCIYLLGRLRNPSIISQFPYSLIDLTLSGSGLAEDPMQSLDKLPNLRSLKLFAK 1010
Query: 152 SFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCAS 202
S+ + + C GGFP L+ L L + L+EW + A L L I C S
Sbjct: 1011 SYLGKNMLCSLGGFPQLRALKLWKLEQLEEWNVDKGALQDLRDLEIRFCRS 1061
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 202 | ||||||
| TAIR|locus:2037639 | 907 | AT1G58390 "AT1G58390" [Arabido | 0.965 | 0.214 | 0.278 | 6.8e-09 | |
| TAIR|locus:2152536 | 908 | AT5G48620 [Arabidopsis thalian | 0.440 | 0.098 | 0.303 | 8e-08 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.920 | 0.177 | 0.27 | 3.9e-06 | |
| TAIR|locus:2826978 | 1049 | AT1G59218 [Arabidopsis thalian | 0.920 | 0.177 | 0.27 | 3.9e-06 | |
| TAIR|locus:2169523 | 901 | AT5G35450 [Arabidopsis thalian | 0.965 | 0.216 | 0.227 | 9e-06 | |
| TAIR|locus:504956184 | 1017 | AT1G58807 "AT1G58807" [Arabido | 0.678 | 0.134 | 0.302 | 1.5e-05 | |
| TAIR|locus:2827038 | 1017 | AT1G59124 "AT1G59124" [Arabido | 0.678 | 0.134 | 0.302 | 1.5e-05 | |
| TAIR|locus:2176486 | 908 | RPP8 "RECOGNITION OF PERONOSPO | 0.965 | 0.214 | 0.236 | 1.8e-05 | |
| TAIR|locus:2025916 | 906 | AT1G59780 "AT1G59780" [Arabido | 0.940 | 0.209 | 0.266 | 4.4e-05 | |
| TAIR|locus:2037623 | 899 | AT1G58410 [Arabidopsis thalian | 0.693 | 0.155 | 0.278 | 0.00047 |
| TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 145 (56.1 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 61/219 (27%), Positives = 94/219 (42%)
Query: 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPG---KYCSALENLNFISALHLSSCTRD 57
+ FI P+ +MH+LR+L + +H + LE L + S H SS +D
Sbjct: 641 VDTEFI-FVPDVFMRMHELRYLKLP-LHMHKKTRLSLRNLVKLETLVYFSTWHSSS--KD 696
Query: 58 ILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVN-ESNML---GI-------- 105
+ G + L +L I LS S+ LR L+ L +V S + GI
Sbjct: 697 LCG-MTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLK 755
Query: 106 -LQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACC 161
L +D+ + FP LT + L+ L++DPMP + S+ R++ C
Sbjct: 756 HLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCS 815
Query: 162 SGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200
GGFP LK L + + +EW + + LE L I C
Sbjct: 816 GGGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDC 854
|
|
| TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 112 EYQFPQSLTHLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACCSGGFPCLKFL 171
++QFP L H+ L + +K+DPMP +F R++ C GGFP L L
Sbjct: 765 QHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCAL 824
Query: 172 HLKSMLWLDEWTMGTKATWKLEHLIINPC 200
+ L+EW + + L L I+ C
Sbjct: 825 GISGESELEEWIVEEGSMPCLRTLTIHDC 853
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 54/200 (27%), Positives = 92/200 (46%)
Query: 10 PEDIWKMHKLRHLNFGYIK-LHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQSL 68
P+D+ + KL N ++ L K CS LE+L + L + T + L + +L++L
Sbjct: 666 PKDMGRKTKLELSNLVKLETLKNFSTKNCS-LEDLR--GMVRLRTLTIE-LRKETSLETL 721
Query: 69 KI-FEDLSHYQSVLSKSL-CELRCLDSLKLVNESNMLGILQIDI------AEYQFPQSLT 120
L + +S+ L E+R ++ +V + L L + + E FP LT
Sbjct: 722 AASIGGLKYLESLTITDLGSEMRTKEA-GIVFDFVYLKTLTLKLYMPRLSKEQHFPSHLT 780
Query: 121 HLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACCSGGFPCLKFLHLKSMLWLD 180
L L + +L++DPMP + SFS +++ C SGGFP L+ L +K + +
Sbjct: 781 TLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWE 840
Query: 181 EWTMGTKATWKLEHLIINPC 200
+W + + L L I C
Sbjct: 841 DWKVEESSMPVLHTLDIRDC 860
|
|
| TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 54/200 (27%), Positives = 92/200 (46%)
Query: 10 PEDIWKMHKLRHLNFGYIK-LHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQSL 68
P+D+ + KL N ++ L K CS LE+L + L + T + L + +L++L
Sbjct: 666 PKDMGRKTKLELSNLVKLETLKNFSTKNCS-LEDLR--GMVRLRTLTIE-LRKETSLETL 721
Query: 69 KI-FEDLSHYQSVLSKSL-CELRCLDSLKLVNESNMLGILQIDI------AEYQFPQSLT 120
L + +S+ L E+R ++ +V + L L + + E FP LT
Sbjct: 722 AASIGGLKYLESLTITDLGSEMRTKEA-GIVFDFVYLKTLTLKLYMPRLSKEQHFPSHLT 780
Query: 121 HLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACCSGGFPCLKFLHLKSMLWLD 180
L L + +L++DPMP + SFS +++ C SGGFP L+ L +K + +
Sbjct: 781 TLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWE 840
Query: 181 EWTMGTKATWKLEHLIINPC 200
+W + + L L I C
Sbjct: 841 DWKVEESSMPVLHTLDIRDC 860
|
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| TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 46/202 (22%), Positives = 83/202 (41%)
Query: 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCT-RDIL 59
+PL D T ++ + L +L + + H+ + L F CT ++
Sbjct: 648 LPLDMHDKTKLELGDLVNLEYL-WCFSTQHSSVTDLLR-MTKLRFFGVSFSERCTFENLS 705
Query: 60 GRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAE-YQFPQS 118
L + L+ + ++ + + E LD + L S LG+ I + +Q P
Sbjct: 706 SSLRQFRKLETLSFIYSRKTYMVDYVGEF-VLDFIHLKKLS--LGVHLSKIPDQHQLPPH 762
Query: 119 LTHLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACCSGGFPCLKFLHLKSMLW 178
+ H+ L +++DPMP + +F R++ C GGFP L+ L +
Sbjct: 763 IAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQLRALQISEQSE 822
Query: 179 LDEWTMGTKATWKLEHLIINPC 200
L+EW + + L LII+ C
Sbjct: 823 LEEWIVEEGSMPCLRDLIIHSC 844
|
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| TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 46/152 (30%), Positives = 70/152 (46%)
Query: 42 NLNFISALHLSSCTRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESN 101
N+ I L + I G L L+ L+I++ S ++ + + + L L L
Sbjct: 701 NIKLIEETSLETLAASI-GGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWL----- 754
Query: 102 MLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACC 161
L + ++ E FP LT L L + +L++DPMP SFS +K+ C
Sbjct: 755 KLYMPRLS-TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCS 813
Query: 162 SGGFPCLKFLHLKSMLWLDEWTMGTKATWKLE 193
SGGFP L+ L S+L L+EW WK+E
Sbjct: 814 SGGFPQLQRL---SLLKLEEWE-----DWKVE 837
|
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| TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 46/152 (30%), Positives = 70/152 (46%)
Query: 42 NLNFISALHLSSCTRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESN 101
N+ I L + I G L L+ L+I++ S ++ + + + L L L
Sbjct: 701 NIKLIEETSLETLAASI-GGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWL----- 754
Query: 102 MLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACC 161
L + ++ E FP LT L L + +L++DPMP SFS +K+ C
Sbjct: 755 KLYMPRLS-TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCS 813
Query: 162 SGGFPCLKFLHLKSMLWLDEWTMGTKATWKLE 193
SGGFP L+ L S+L L+EW WK+E
Sbjct: 814 SGGFPQLQRL---SLLKLEEWE-----DWKVE 837
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| TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 48/203 (23%), Positives = 86/203 (42%)
Query: 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS-CTRDIL 59
+PL D T ++ + L +L +G+ H+ + L ++ A+ LS C + L
Sbjct: 656 LPLKMDDKTKLELGDLVNLEYL-YGFSTQHSSVTDLLR-MTKLRYL-AVSLSERCNFETL 712
Query: 60 GR-LPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAE-YQFPQ 117
L L++L+ L ++ + + E LD + + L + I + +QFP
Sbjct: 713 SSSLRELRNLETLNFLFSLETYMVDYMGEF-VLDHFIHLKQLG-LAVRMSKIPDQHQFPP 770
Query: 118 SLTHLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACCSGGFPCLKFLHLKSML 177
L HL L +++DPMP + +F ++ C GGFP L + +
Sbjct: 771 HLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKES 830
Query: 178 WLDEWTMGTKATWKLEHLIINPC 200
L+EW + + L L I+ C
Sbjct: 831 ELEEWIVEEGSMPCLRTLTIDDC 853
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| TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 54/203 (26%), Positives = 90/203 (44%)
Query: 8 HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQS 67
+ P +M +LR+L+ + + + + L+ I+ S D L R+ L++
Sbjct: 637 NVPNVFKEMLELRYLSLPWERSSLTKLELGNLLKLETLINFSTKDSSVTD-LHRMTKLRT 695
Query: 68 LKIF---EDLSHYQSVLSKSLCELRCLDSLKLVNESNMLG------ILQIDIAEYQ-FPQ 117
L+I E L H ++ LS +L L L+ L + N + I + + + Q FP
Sbjct: 696 LQILISGEGL-HMET-LSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPS 753
Query: 118 SLTHLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACCSGGFPCLKFLHLKSML 177
LT +SL L++DPMPT N++ R++ C GGFP L L + +
Sbjct: 754 HLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLD 813
Query: 178 WLDEWTMGTKATWKLEHLIINPC 200
L+EW + + L L I C
Sbjct: 814 ALEEWIVEEGSMPLLHTLHIVDC 836
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|
| TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00047, P = 0.00047
Identities = 41/147 (27%), Positives = 63/147 (42%)
Query: 51 LSSCTRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI 110
L + + + G L +L++ KI E+ + + + + L L L E L +Q
Sbjct: 709 LQTLSASVCG-LRHLENFKIMENAGVNRMGEERMVLDFTYLKKLTLSIEMPRLPKIQ--- 764
Query: 111 AEYQFPQSLTHLSLTNTKLKDDPMPTXXXXXXXXXXXXXQNSFSRRKLACCSGGFPCLKF 170
P LT L L+ L++DPMP SFS RK+ C +GGFP L+
Sbjct: 765 ---HLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYLSFSGRKMVCSAGGFPQLRK 821
Query: 171 LHLKSMLWLDEWTMGTKATWKLEHLII 197
L L +EW + + +L L I
Sbjct: 822 LALDEQEEWEEWIVEEGSMSRLHTLSI 848
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.437 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 202 189 0.00089 110 3 11 22 0.40 32
31 0.42 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 621 (66 KB)
Total size of DFA: 193 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.92u 0.20s 17.12t Elapsed: 00:00:00
Total cpu time: 16.92u 0.20s 17.12t Elapsed: 00:00:00
Start: Fri May 10 07:41:26 2013 End: Fri May 10 07:41:26 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00017592001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (858 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 202 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.76 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.75 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.49 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.48 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.42 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.4 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.4 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.39 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.37 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.34 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.32 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.32 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.14 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.08 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.07 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.06 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.96 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.95 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.9 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.87 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.87 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.81 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.81 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.81 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.77 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.77 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.73 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.72 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.7 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.56 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.51 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.45 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.44 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.39 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.39 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.39 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.26 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.25 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.21 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.19 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.08 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.02 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.89 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.69 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.68 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.6 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.54 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.4 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.39 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.24 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.15 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.99 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.98 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.86 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.59 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.57 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.35 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.22 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.1 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.09 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.02 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.98 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.98 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.69 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.44 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.32 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.05 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.69 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.34 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.6 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.12 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.12 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 87.38 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 86.68 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 82.41 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 81.04 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=155.54 Aligned_cols=193 Identities=22% Similarity=0.269 Sum_probs=119.0
Q ss_pred CCccc-cccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCchH
Q 037964 3 LSFID-HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 3 ~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
++.+. .+|.+++++++|++|++++|.....+|..++++++|++|+...+.. . |.+ ++++++|+.|++++|. ..
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~--l~ 225 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN--LS 225 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc--cC
Confidence 44443 5677788888888888887555667777777777777776544432 2 555 7777777777777776 55
Q ss_pred HHHHHHhccCCCccEEEeecCcc------hhh-c------------hhccc--ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESN------MLG-I------------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~------~~~-~------------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+.+|..++++++|+.|+++++.- .+. + +.+.+ ++.. +++|+.|++++|.+.+..+..+
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhH
Confidence 56666777777777777765310 000 0 11111 3344 5666666666666665555666
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
.++++|+.|++++|.+.+.. +.....+++|+.|++++|.....++...+.+++|+.|++++|
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred cCCCCCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 66666777776666554432 333455677777777777633345555556677777777665
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=154.23 Aligned_cols=195 Identities=22% Similarity=0.214 Sum_probs=141.8
Q ss_pred CCCcc-ccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccC--ch-hHHHcCcCCccceeeEEeecCch
Q 037964 2 PLSFI-DHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS--SC-TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 2 ~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
.++.+ +.+|.+++++++|++|++++|.....+|..++.+.+|++|+...+. +. |.+ ++++++|++|++++|. .
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~--l 248 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN--L 248 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce--e
Confidence 34444 3577788888888888888855566777778888888887754443 22 556 7778888888887776 5
Q ss_pred HHHHHHHhccCCCccEEEeecCc---c---hhh----c---------hhccc--ccccCCCCccEEEeeCCCCCCCCCcc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNES---N---MLG----I---------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPT 136 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~---~---~~~----~---------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~ 136 (202)
.+.+|..++++++|+.|+++.+. . .+. + +.+.+ ++.. +++|+.|++.+|.+.+..+..
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChh
Confidence 56677777777777777776531 1 110 0 22222 4667 899999999999999888888
Q ss_pred ccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 137 LEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+..+++|+.|+++.|.+.+.. +...+.+++|+.|++++|.....++.....+++|+.|++.+|.
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 999999999999988886543 5556778999999999998444555555667889999998763
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-14 Score=126.10 Aligned_cols=190 Identities=19% Similarity=0.164 Sum_probs=93.1
Q ss_pred ccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHH
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLS 82 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (202)
.+..+|..+ ...+|+.|++.+ +....+|.++..+++|+.++....... +++ ++.+++|+.|++.+|. ....+|
T Consensus 600 ~l~~lP~~f-~~~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~--~L~~lp 674 (1153)
T PLN03210 600 PLRCMPSNF-RPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS--SLVELP 674 (1153)
T ss_pred CCCCCCCcC-CccCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC--Cccccc
Confidence 344555544 345566666665 344445555555555555553332211 334 5555556666665554 445555
Q ss_pred HHhccCCCccEEEeecCcchhh---------c----hhcc--c-ccccCCCCccEEEeeCCCCCCCCCcc----------
Q 037964 83 KSLCELRCLDSLKLVNESNMLG---------I----LQID--I-AEYQFPQSLTHLSLTNTKLKDDPMPT---------- 136 (202)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~~~~---------~----~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~~~---------- 136 (202)
.+++++++|+.|+++++..... + ++|. + .+...+.+|+.|++.++.+...+...
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELIL 754 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccc
Confidence 5555555555555554211000 0 0110 0 01111345555666555544332110
Q ss_pred -------------------ccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEee
Q 037964 137 -------------------LEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLII 197 (202)
Q Consensus 137 -------------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i 197 (202)
....++|+.|++++|....+ +|...+.+++|+.|++++|..++.+|... .+++|++|++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 00123555555554433222 24445567777777777776666665443 4677777777
Q ss_pred ecCC
Q 037964 198 NPCA 201 (202)
Q Consensus 198 ~~c~ 201 (202)
++|.
T Consensus 833 s~c~ 836 (1153)
T PLN03210 833 SGCS 836 (1153)
T ss_pred CCCC
Confidence 7764
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-16 Score=128.50 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=92.3
Q ss_pred CCCccccccHH-HhccccccEEEeCceeeccccccccccCCCcceeccccc------------------------Cch--
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHL------------------------SSC-- 54 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~------------------------~~~-- 54 (202)
+.|+|..||.. +.+++.|-.||+++ |....+|..+..+.+|++|++.++ ...
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence 45667777754 56677777777777 666666665555555555543222 111
Q ss_pred --hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-----ccccCCCCccEEEeeCC
Q 037964 55 --TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-----AEYQFPQSLTHLSLTNT 127 (202)
Q Consensus 55 --~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~l~~L~~L~l~~~ 127 (202)
|.. +..|.+|+.++++.|. .-.+|+.+.++++|++|+++++ .+ ..+. -.+|++|+++.|
T Consensus 213 N~Pts-ld~l~NL~dvDlS~N~---Lp~vPecly~l~~LrrLNLS~N---------~iteL~~~~~~-W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 213 NIPTS-LDDLHNLRDVDLSENN---LPIVPECLYKLRNLRRLNLSGN---------KITELNMTEGE-WENLETLNLSRN 278 (1255)
T ss_pred cCCCc-hhhhhhhhhccccccC---CCcchHHHhhhhhhheeccCcC---------ceeeeeccHHH-Hhhhhhhccccc
Confidence 444 5556666666666663 5567777777777777777652 11 1222 346666666666
Q ss_pred CCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccc
Q 037964 128 KLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSM 176 (202)
Q Consensus 128 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 176 (202)
++... |.++.++++|+.|++..|...-+++|...+.+..|+.+..++|
T Consensus 279 QLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 279 QLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred hhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 66654 3566666666666666666555555554444444444444433
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-13 Score=119.98 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
+++|+.|++++|......+. ..++|+.|++++|.+. .+|...+.+++|+.|++.+|..+..++.....++.|+.+
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred ccccCEEECCCCCccccccc---cccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 44555555555432221111 1245666666655543 234455678899999999988888888777788889999
Q ss_pred eeecCCC
Q 037964 196 IINPCAS 202 (202)
Q Consensus 196 ~i~~c~~ 202 (202)
++.+|++
T Consensus 899 ~l~~C~~ 905 (1153)
T PLN03210 899 DFSDCGA 905 (1153)
T ss_pred ecCCCcc
Confidence 9988863
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-15 Score=119.87 Aligned_cols=180 Identities=18% Similarity=0.127 Sum_probs=90.1
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.+++.++|.+++.+..|++|+.++ +....+|++++.+..+..++..+.... |.+ +..+.+|..+++.+|. ..+
T Consensus 100 ~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~---l~~ 174 (565)
T KOG0472|consen 100 HNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNK---LKA 174 (565)
T ss_pred cchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccc---hhh
Confidence 455666666666666666666666 555556666666666666654444433 444 6666666666666663 444
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
+|.....|+.|+++|...+. -+.+ .++. +.+|..|++..|++...| +|+++..|+.+++..|.+.- +
T Consensus 175 l~~~~i~m~~L~~ld~~~N~------L~tlP~~lg~-l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~--l 243 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNL------LETLPPELGG-LESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEM--L 243 (565)
T ss_pred CCHHHHHHHHHHhcccchhh------hhcCChhhcc-hhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHh--h
Confidence 44444446666666654321 0111 2334 455555555555555432 44455555555544333211 1
Q ss_pred E-EcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 159 A-CCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 159 ~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
+ .....++++..|++++|. ++++|.+...+.+|++|++++
T Consensus 244 pae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred HHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccC
Confidence 1 112234444444444444 444444444344444444443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-14 Score=114.78 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=95.8
Q ss_pred CCccccccH-HHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 3 LSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 3 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
-|.|++||. ++-.-.++++|++++ |....+.. .+.++.+|.+|++.++... |.-+|+++++|+.|++..|+ ..
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~--ir 234 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR--IR 234 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc--ee
Confidence 345555553 233445566666666 43333332 2555555666555454444 32227777777777777775 22
Q ss_pred HHHHHHhccCCCccEEEeecCc------chhh----c-----hhccc------ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 79 SVLSKSLCELRCLDSLKLVNES------NMLG----I-----LQIDI------AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~------~~~~----~-----~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
..-.-.|..+++|+.|.+.+++ +.+- + -.+++ |+-. ++.|+.|++++|.+....++..
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecchh
Confidence 2223445555555555554421 1100 0 01111 4555 5666666666666665555555
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPC 200 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c 200 (202)
..+++|+.|+++.|.+..-+ +.....+..|+.|.+++|. +..+.- ....+.+|++|++++.
T Consensus 314 sftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhcccceeEeccccccccCC-hhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCC
Confidence 56666666666655554321 1222335556666666665 433211 1123556666666553
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-13 Score=112.40 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=73.3
Q ss_pred CCccccccH-HHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCch
Q 037964 3 LSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 3 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
.|.|.++.+ ++..++.||.||++. |....+|. .+..=.++++|++..+++. ... |..+.+|-.|.++.|+ .
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNr--i 209 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNR--I 209 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeeecccCc--c
Confidence 344555432 355566666666666 44333333 2444456666654444433 333 6667777777777776 4
Q ss_pred HHHHHHHhccCCCccEEEeecCc-chhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNES-NMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
...-+.+|.++++|+.|++.++. ...++ - .+.. +++|+.|.+..|++.+..-..|-.+.++++|++.+|..
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~---l-tFqg-L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEG---L-TFQG-LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehh---h-hhcC-chhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 44444577779999999887631 00000 0 2333 44444444444444443333333444444444444443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-15 Score=103.81 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=124.1
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCC
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRC 90 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (202)
+.++++++.|.++. |.....|..|..+.+|+.|+..+.... |.+ ++.+++||.|+++-|+ ...+|..|+.++.
T Consensus 29 Lf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnr---l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNR---LNILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhh---hhcCccccCCCch
Confidence 66788999999999 777777778999999999987777655 888 9999999999999884 7889999999999
Q ss_pred ccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcc
Q 037964 91 LDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCL 168 (202)
Q Consensus 91 L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 168 (202)
|+.||+.+++-. ...+ .+-. ++.|+.|+++.|.+.-.| ..++++.+|+.|.+.+|.... +|...+.+..|
T Consensus 104 levldltynnl~----e~~lpgnff~-m~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~--lpkeig~lt~l 175 (264)
T KOG0617|consen 104 LEVLDLTYNNLN----ENSLPGNFFY-MTTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRL 175 (264)
T ss_pred hhhhhccccccc----cccCCcchhH-HHHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhh--CcHHHHHHHHH
Confidence 999999874210 0011 1222 577888899888887664 566888999999998777632 35556778889
Q ss_pred cEEEeccccCccceeeCCC
Q 037964 169 KFLHLKSMLWLDEWTMGTK 187 (202)
Q Consensus 169 ~~L~l~~~~~l~~~~~~~~ 187 (202)
++|++.++. +.-+|.+.+
T Consensus 176 relhiqgnr-l~vlppel~ 193 (264)
T KOG0617|consen 176 RELHIQGNR-LTVLPPELA 193 (264)
T ss_pred HHHhcccce-eeecChhhh
Confidence 999998887 666665543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-14 Score=115.48 Aligned_cols=184 Identities=20% Similarity=0.186 Sum_probs=134.7
Q ss_pred ccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHH
Q 037964 7 DHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKS 84 (202)
Q Consensus 7 ~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (202)
+.||.++.+|..|..||++. |...+.|.++....++-.|++.++.+. |..++-+++.|-.|++++|+ .+.+|..
T Consensus 93 sGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr---Le~LPPQ 168 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR---LEMLPPQ 168 (1255)
T ss_pred CCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch---hhhcCHH
Confidence 34899999999999999999 888889988988888888886666654 66667889999999999995 8889999
Q ss_pred hccCCCccEEEeecCcc-hhh---c----------hhccc--------ccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 85 LCELRCLDSLKLVNESN-MLG---I----------LQIDI--------AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 85 l~~l~~L~~L~l~~~~~-~~~---~----------~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
+.++..|+.|++++++- .+. + +++.- .+.. +.+|..++++.|++... |+++-++++
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N~Lp~v-Pecly~l~~ 246 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSENNLPIV-PECLYKLRN 246 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh-hhhhhhccccccCCCcc-hHHHhhhhh
Confidence 99999999999988541 111 0 22211 3445 66777777777777765 467777777
Q ss_pred cceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 143 LLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
|+.|++++|.+.. +....+...+|++|++++|+ +..+|.-...++.|++|...+
T Consensus 247 LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 247 LRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred hheeccCcCceee--eeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhcc
Confidence 8888887776643 33444556777888888777 666665556667776665544
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-15 Score=115.31 Aligned_cols=182 Identities=16% Similarity=0.128 Sum_probs=106.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.+.+.++|++++++..|..++..+ |....+|.+++.+.++..+........ +++ .-+|+.|++++...| ..+
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N---~L~ 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSN---LLE 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchh---hhh
Confidence 4577888899999999999999888 777777877887777777764333322 444 334888888888888 688
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
.+|..++.+.+|+.|++..+.-. .+ .+.. +..|.+++++.|.++-.+.+...+++++..|++.+|.... .
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~------~lPef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke--~ 267 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR------FLPEFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE--V 267 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc------cCCCCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc--C
Confidence 88888888888888888753200 00 2333 4444444444444444433333344444444444444321 1
Q ss_pred EEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 159 ACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
|....-+++|++|++++|. +..+|.+.|.+ .|+.|-+.+
T Consensus 268 Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred chHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcC
Confidence 1112224444444444444 44444444444 444444433
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-13 Score=106.82 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=123.2
Q ss_pred CCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccc-cCch--hHHHcCc-----------------
Q 037964 3 LSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALH-LSSC--TRDILGR----------------- 61 (202)
Q Consensus 3 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~-~~~~--~~~~l~~----------------- 61 (202)
.|.|+.||+ +|+.+++||.||++.|+....-|+.+.++.++.+|.... .++. +..+|+.
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 578999986 699999999999999666666677788888877776444 2222 4343444
Q ss_pred -------CCccceeeEEeecCchHHHHHH-HhccCCCccEEEeecCcchhh----c------------------------
Q 037964 62 -------LPNLQSLKIFEDLSHYQSVLSK-SLCELRCLDSLKLVNESNMLG----I------------------------ 105 (202)
Q Consensus 62 -------l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~----~------------------------ 105 (202)
|++|+.|.+.+|. ...++. ++..+..++.+++..++..-+ |
T Consensus 156 r~~al~dL~~l~lLslyDn~---~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~ 232 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNK---IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLY 232 (498)
T ss_pred hHHHHHHhhhcchhcccchh---hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHH
Confidence 5555555555442 333333 444455555554443221110 0
Q ss_pred ----------------------hhcc--c-------ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 106 ----------------------LQID--I-------AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 106 ----------------------~~~~--~-------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
+.+. . .+.. +++|+.+++++|+++.....+|.++.+++.|++..|.+.
T Consensus 233 ~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 233 YKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred HHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 0000 0 3566 899999999999999988889999999999999988864
Q ss_pred CceEEEcCCCCCcccEEEeccccCccceeeCC-CccccccEEeeecC
Q 037964 155 RRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-KATWKLEHLIINPC 200 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c 200 (202)
.-. .....++..|+.|++.+|+ ++.+.+.. ....+|.+|.+-..
T Consensus 312 ~v~-~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 312 FVS-SGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred HHH-HHhhhccccceeeeecCCe-eEEEecccccccceeeeeehccC
Confidence 311 2244578899999999998 66543321 22345666665443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-11 Score=97.77 Aligned_cols=162 Identities=23% Similarity=0.157 Sum_probs=70.9
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCCC---cceecccccCc--h----hHHHcCcC-CccceeeEEeecCc--h
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALEN---LNFISALHLSS--C----TRDILGRL-PNLQSLKIFEDLSH--Y 77 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~---L~~L~~~~~~~--~----~~~~l~~l-~~L~~L~l~~~~~~--~ 77 (202)
+..+..+++|++|++++|.+....+..+..+.+ |++|+...+.. . ...++..+ ++|+.|++++|... .
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 344455556666666553333333333333333 55555332211 1 11114444 55566666555411 1
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhc----cc--ccccCCCCccEEEeeCCCCCCCCC----ccccCCCCcceEE
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQI----DI--AEYQFPQSLTHLSLTNTKLKDDPM----PTLEKLPHLLVLK 147 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~--~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~ 147 (202)
...++..+..+++|+.|+++++. +.+ .+ .+.. .++|+.|++++|.+..... ..+..+++|++|+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~-----l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNG-----IGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCC-----CchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 12344444555556655555421 010 00 1223 3466666666665543321 1233455666666
Q ss_pred eccCccCCceEEEcCC----CCCcccEEEecccc
Q 037964 148 LKQNSFSRRKLACCSG----GFPCLKFLHLKSML 177 (202)
Q Consensus 148 l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~ 177 (202)
+++|.+.+..+..... ..+.|+.|++.+|.
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 6655544311110000 23566666666654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.6e-12 Score=107.01 Aligned_cols=84 Identities=26% Similarity=0.259 Sum_probs=56.7
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCc---------------------eEEEcCCCCCcccEEEec
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR---------------------KLACCSGGFPCLKFLHLK 174 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---------------------~~~~~~~~~~~L~~L~l~ 174 (202)
..+|+.|++++|.+...+...+.+++.|+.|++++|....- .+| ....++.|+.++++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc
Confidence 66777777777777766666667777777777776665320 001 22347889999999
Q ss_pred cccCccceeeCCCcc-ccccEEeeecCC
Q 037964 175 SMLWLDEWTMGTKAT-WKLEHLIINPCA 201 (202)
Q Consensus 175 ~~~~l~~~~~~~~~~-~~L~~L~i~~c~ 201 (202)
.|. ++.+......- |.|++|++++.+
T Consensus 461 ~N~-L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 461 CNN-LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cch-hhhhhhhhhCCCcccceeeccCCc
Confidence 887 77665443323 789999998875
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-12 Score=92.03 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=89.9
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
++.++++-+|+.+..+.+|+.|++.+ |....+|..+..+++|+.|+..-.+-. |+. ||.+|.|..|++++|. -..
T Consensus 40 LSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynn-l~e 116 (264)
T KOG0617|consen 40 LSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNN-LNE 116 (264)
T ss_pred cccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccc-ccc
Confidence 35677888888888888888888888 777888888888888877763222222 667 8888888888888765 112
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
..+|.-|..+..|+-|++..++ --.+ .++. +.+|+-|.+..|.+-.. +..++.+..|+.|++++|..
T Consensus 117 ~~lpgnff~m~tlralyl~dnd------fe~lp~dvg~-lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDND------FEILPPDVGK-LTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCC------cccCChhhhh-hcceeEEeeccCchhhC-cHHHHHHHHHHHHhccccee
Confidence 3345445455555555554321 0000 3455 66666666666665554 35566666666666665554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-11 Score=94.13 Aligned_cols=185 Identities=19% Similarity=0.137 Sum_probs=92.1
Q ss_pred ccHHHhccccccEEEeCceeec------cccccccccCCCcceecccccCch---hHHHcCcC---CccceeeEEeecCc
Q 037964 9 TPEDIWKMHKLRHLNFGYIKLH------AHPGKYCSALENLNFISALHLSSC---TRDILGRL---PNLQSLKIFEDLSH 76 (202)
Q Consensus 9 lp~~~~~l~~L~~L~l~~~~~~------~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l---~~L~~L~l~~~~~~ 76 (202)
++..+...+++++++++++... ..++..+..+++|+.|+....... +.. +..+ ++|++|+++++...
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccc
Confidence 4444555566666666662222 112233444556666654333211 222 3333 33666666666411
Q ss_pred --hHHHHHHHhccC-CCccEEEeecCcchhhchhc----cc--ccccCCCCccEEEeeCCCCCCCCCc----cccCCCCc
Q 037964 77 --YQSVLSKSLCEL-RCLDSLKLVNESNMLGILQI----DI--AEYQFPQSLTHLSLTNTKLKDDPMP----TLEKLPHL 143 (202)
Q Consensus 77 --~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~----~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L 143 (202)
....+...+..+ ++|+.|+++++. +++ .+ .+.. +++|+.|++++|.+.+.... .+...++|
T Consensus 122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~-----l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 195 (319)
T cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGRNR-----LEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEGLKANCNL 195 (319)
T ss_pred hHHHHHHHHHHHhCCCCceEEEcCCCc-----CCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHHHHhCCCC
Confidence 112333455555 666666666532 010 01 2334 56777777777776643322 23345677
Q ss_pred ceEEeccCccCCceE---EEcCCCCCcccEEEeccccCccceeeC--CC----ccccccEEeeecCC
Q 037964 144 LVLKLKQNSFSRRKL---ACCSGGFPCLKFLHLKSMLWLDEWTMG--TK----ATWKLEHLIINPCA 201 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~----~~~~L~~L~i~~c~ 201 (202)
++|++++|.+.+... ......+++|+.|++++|. +...... .. ..+.|++|++.+|.
T Consensus 196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 777777666543221 1123346778888888776 4321100 01 12567777777663
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-10 Score=95.74 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=16.7
Q ss_pred CccccccHHHhccccccEEEeCceeeccccccccccCCCcceec
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFIS 47 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 47 (202)
.+++.+|..+. ++|+.|++++ |....+|..+. .+|++|+
T Consensus 188 ~~LtsLP~~Ip--~~L~~L~Ls~-N~LtsLP~~l~--~nL~~L~ 226 (754)
T PRK15370 188 LGLTTIPACIP--EQITTLILDN-NELKSLPENLQ--GNIKTLY 226 (754)
T ss_pred CCcCcCCcccc--cCCcEEEecC-CCCCcCChhhc--cCCCEEE
Confidence 34445554332 3455555555 33334443332 3444444
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=93.86 Aligned_cols=35 Identities=9% Similarity=-0.122 Sum_probs=23.2
Q ss_pred CcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 166 PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+|+.|++++|. ++.+|...+.+++|+.|++++++
T Consensus 422 ~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 422 SGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 345566666665 55555555667888888888765
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-11 Score=91.68 Aligned_cols=181 Identities=20% Similarity=0.183 Sum_probs=110.1
Q ss_pred ccccEEEeCceeecc-ccccccccCCCcceecccccC--ch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 17 HKLRHLNFGYIKLHA-HPGKYCSALENLNFISALHLS--SC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
++|++||+++.+... .+-.-+.++.+|+.|....+. +. ..+ +++-.+|+.++++.+++...-.+.-.+..++.|+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 357788888733322 122224666777776644332 33 555 7777888888888877555555556677778888
Q ss_pred EEEeecCcchhhchhcccccccCCCCccEEEeeCC--CCCCCCCcccc-CCCCcceEEeccCccCCceEEEcCCCCCccc
Q 037964 93 SLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNT--KLKDDPMPTLE-KLPHLLVLKLKQNSFSRRKLACCSGGFPCLK 169 (202)
Q Consensus 93 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 169 (202)
.|+++.+...-+ .-++.+.+.-++++.|+++++ .+.......+. ++|+|.+|+++++.....+.......|+.|+
T Consensus 264 ~LNlsWc~l~~~--~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 264 ELNLSWCFLFTE--KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hcCchHhhccch--hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 888876321100 000022331346777777776 22222344554 7888888998866543323333344688899
Q ss_pred EEEeccccCcc-ceeeCCCccccccEEeeecC
Q 037964 170 FLHLKSMLWLD-EWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 170 ~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~c 200 (202)
+|.++.|+.+. +........|+|.+|++.+|
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 99999888653 33445567888999988877
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-09 Score=91.96 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=115.6
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
+.+|+++.+|..+. .+|++|++++ |....+|..+. .+|+.|+...+... |.. +. ++|+.|++++|. .
T Consensus 206 Ls~N~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N~---L 274 (754)
T PRK15370 206 LDNNELKSLPENLQ--GNIKTLYANS-NQLTSIPATLP--DTIQEMELSINRITELPER-LP--SALQSLDLFHNK---I 274 (754)
T ss_pred ecCCCCCcCChhhc--cCCCEEECCC-CccccCChhhh--ccccEEECcCCccCcCChh-Hh--CCCCEEECcCCc---c
Confidence 35788889998765 5899999999 55556776553 46777765444333 544 43 579999999886 3
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
..+|..+. ++|+.|+++++. +.+ + ...++++|+.|++++|++...+. .+ .++|+.|++++|.+.. +
T Consensus 275 ~~LP~~l~--~sL~~L~Ls~N~-----Lt~-L-P~~lp~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~Lt~--L 340 (754)
T PRK15370 275 SCLPENLP--EELRYLSVYDNS-----IRT-L-PAHLPSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGENALTS--L 340 (754)
T ss_pred CccccccC--CCCcEEECCCCc-----ccc-C-cccchhhHHHHHhcCCccccCCc-cc--cccceeccccCCcccc--C
Confidence 35676554 489999997532 010 0 11114578899999998886542 22 2689999999887653 2
Q ss_pred EEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 159 ACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+. .-.++|+.|++++|. +..++.. ..+.|++|++++|.
T Consensus 341 P~--~l~~sL~~L~Ls~N~-L~~LP~~--lp~~L~~LdLs~N~ 378 (754)
T PRK15370 341 PA--SLPPELQVLDVSKNQ-ITVLPET--LPPTITTLDVSRNA 378 (754)
T ss_pred Ch--hhcCcccEEECCCCC-CCcCChh--hcCCcCEEECCCCc
Confidence 22 224799999999997 6655433 24689999999874
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-10 Score=80.50 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccc-cCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCS-ALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
...|.++|. +.+..+++.|++.+ +....+. .++ .+.+|+.|+..++... .+. +..+++|+.|++++|+ ...
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~-n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~---I~~ 78 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRG-NQISTIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNR---ISS 78 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS------S
T ss_pred ccccccccc-cccccccccccccc-ccccccc-chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCC---CCc
Confidence 344555555 55666789999999 5544443 355 4677888776555555 656 7778888888888886 323
Q ss_pred HHHHh-ccCCCccEEEeec
Q 037964 81 LSKSL-CELRCLDSLKLVN 98 (202)
Q Consensus 81 ~~~~l-~~l~~L~~L~l~~ 98 (202)
+.+.+ ..+++|+.|++++
T Consensus 79 i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -CHHHHHH-TT--EEE-TT
T ss_pred cccchHHhCCcCCEEECcC
Confidence 32222 2455666666643
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=90.22 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=27.6
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEee
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFED 73 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~ 73 (202)
|..++.|++||+++|.....+|..|+++-+|+.|+....... |.. ++++.+|++|++..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVT 628 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-HHHHHhhheeccccc
Confidence 334555555555542224455555555555554443333322 434 444444444444444
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-10 Score=88.22 Aligned_cols=87 Identities=25% Similarity=0.182 Sum_probs=61.4
Q ss_pred HhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 84 SLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
.|+++++|+.|+++++. -..| |+.. ...++.|+|..|++....-..|.++..|+.|++++|.+..-- +.
T Consensus 269 cf~~L~~L~~lnlsnN~------i~~i~~~aFe~-~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-~~ 340 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNK------ITRIEDGAFEG-AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-PG 340 (498)
T ss_pred HHhhcccceEeccCCCc------cchhhhhhhcc-hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe-cc
Confidence 46778999999998642 1112 7777 888889999888887766667778888888999888875321 22
Q ss_pred cCCCCCcccEEEeccccC
Q 037964 161 CSGGFPCLKFLHLKSMLW 178 (202)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~ 178 (202)
......+|.+|.+-.|+.
T Consensus 341 aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccceeeeeehccCcc
Confidence 334456677777777663
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-10 Score=98.46 Aligned_cols=171 Identities=22% Similarity=0.223 Sum_probs=108.8
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSL 94 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 94 (202)
.+|.+++++. +....+|.+++.+.+|+.+...++.-. +.+ +..+++|++|.+..|. .+.+|....+.+.|++|
T Consensus 241 ~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~ne---l~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYNE---LEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecch-hhhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhhh---hhhCCCcccccceeeee
Confidence 4666677776 555566666777777777765544434 555 6677777777777773 66667777777777777
Q ss_pred EeecCc--chhh-c-------------hhccc------ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCc
Q 037964 95 KLVNES--NMLG-I-------------LQIDI------AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNS 152 (202)
Q Consensus 95 ~l~~~~--~~~~-~-------------~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 152 (202)
++..+. ...+ + .+..+ .-.. .+.|+.|++.+|.+.+...+.+.++.+|+.|++++|.
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~-~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN-HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh-hHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 776521 0001 0 01111 1122 5679999999999999999999999999999999886
Q ss_pred cCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 153 FSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 153 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
...-. ......++.|+.|++++|. ++.++-....+++|+.|
T Consensus 395 L~~fp-as~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 395 LNSFP-ASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTL 435 (1081)
T ss_pred cccCC-HHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHH
Confidence 64210 1234457777888888876 65554433333334333
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=85.74 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=23.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecc
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISA 48 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~ 48 (202)
+++.++.+|..+. .+|+.|++.+ |....+|.. +++|+.|+.
T Consensus 209 s~~~LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~l---p~~Lk~LdL 249 (788)
T PRK15387 209 GESGLTTLPDCLP--AHITTLVIPD-NNLTSLPAL---PPELRTLEV 249 (788)
T ss_pred CCCCCCcCCcchh--cCCCEEEccC-CcCCCCCCC---CCCCcEEEe
Confidence 4556677777654 3566666666 444445532 345555553
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-09 Score=92.86 Aligned_cols=177 Identities=21% Similarity=0.170 Sum_probs=113.1
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
+..++++|++++.+.+||+|++++ +....+|.+++++.+|.+|+......- ++.+...|++||+|.+..........
T Consensus 581 ~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~ 659 (889)
T KOG4658|consen 581 NSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL 659 (889)
T ss_pred CCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchh
Confidence 346788999999999999999999 777799999999999999985555432 43426679999999998764335566
Q ss_pred HHHHhccCCCccEEEeecCcc-hh-hc------------hh--ccc------ccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 81 LSKSLCELRCLDSLKLVNESN-ML-GI------------LQ--IDI------AEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~-~~-~~------------~~--~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
....+.++.+|+.++...... .+ ++ +. +.. .... +.+|+.|.+.++.+.........
T Consensus 660 ~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~-l~~L~~L~i~~~~~~e~~~~~~~ 738 (889)
T KOG4658|consen 660 LLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS-LGNLEELSILDCGISEIVIEWEE 738 (889)
T ss_pred hHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc-ccCcceEEEEcCCCchhhccccc
Confidence 677778888888888866332 11 10 11 100 3444 67777777777776543332211
Q ss_pred C------CCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCcccee
Q 037964 139 K------LPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWT 183 (202)
Q Consensus 139 ~------l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 183 (202)
. ++++..+... ++..... ..+....|+|+.|.+.+|...+++.
T Consensus 739 ~~~~~~~f~~l~~~~~~-~~~~~r~-l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 739 SLIVLLCFPNLSKVSIL-NCHMLRD-LTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccchhhhHHHHHHHHhh-ccccccc-cchhhccCcccEEEEecccccccCC
Confidence 1 2233333332 2211111 2334457788888888877665543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-09 Score=84.53 Aligned_cols=128 Identities=22% Similarity=0.214 Sum_probs=71.6
Q ss_pred CccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCC-CccccCC
Q 037964 63 PNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDP-MPTLEKL 140 (202)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l 140 (202)
+.|+.|.++.|. ...+.+...+..+|+|+.|++..+... .... ...- ++.|+.|+|++|++...+ ....+.+
T Consensus 197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~----~~~~~~~~i-~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEII----LIKATSTKI-LQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccccc----ceecchhhh-hhHHhhccccCCcccccccccccccc
Confidence 444444444443 114444455555666666666543211 0000 2333 677888888888776544 3456678
Q ss_pred CCcceEEeccCccCCceEEE-----cCCCCCcccEEEeccccCccceeeC--CCccccccEEee
Q 037964 141 PHLLVLKLKQNSFSRRKLAC-----CSGGFPCLKFLHLKSMLWLDEWTMG--TKATWKLEHLII 197 (202)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~i 197 (202)
|.|..|.++.++...-..+. ....|++|++|++..|+ ..+|+.- ....++|+.|.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhc
Confidence 88888888866653311111 12458888888888887 6556433 233455665554
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-09 Score=85.90 Aligned_cols=84 Identities=24% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC-------Cc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-------KA 188 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~ 188 (202)
+++++.|++..|..-........-+..|+.|++++|.+.........+.||.|+.|.++.+. ++.+.... ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence 55666666655531111112222344566666666665443323345567777777777776 44443221 35
Q ss_pred cccccEEeeecC
Q 037964 189 TWKLEHLIINPC 200 (202)
Q Consensus 189 ~~~L~~L~i~~c 200 (202)
||+|++|++...
T Consensus 300 f~kL~~L~i~~N 311 (505)
T KOG3207|consen 300 FPKLEYLNISEN 311 (505)
T ss_pred cccceeeecccC
Confidence 788888887654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-09 Score=76.34 Aligned_cols=61 Identities=26% Similarity=0.302 Sum_probs=19.8
Q ss_pred CCCccEEEeeCCCCCCCCCccc-cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTL-EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+++|+.|++++|.++... +.+ ..+|+|+.|++++|.+..-.-......+|+|+.|++.+|+
T Consensus 63 L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 556666666666666542 222 2466666666665555331111223346666666666666
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=77.34 Aligned_cols=173 Identities=21% Similarity=0.235 Sum_probs=99.6
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCC-CcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALE-NLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
+..+..++.++.|++.+ +....+|...+.+. +|+.|+....... +.. ++.+++|+.|++++|+ ...++...+
T Consensus 109 ~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~---l~~l~~~~~ 183 (394)
T COG4886 109 ISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFND---LSDLPKLLS 183 (394)
T ss_pred chhhhcccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCch---hhhhhhhhh
Confidence 34455566777777777 66666666566553 7777764444433 345 7777777777777774 666666666
Q ss_pred cCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCC
Q 037964 87 ELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGG 164 (202)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 164 (202)
..+.|+.|+++++. -..+ .... +.+|+++.+.+|+.... +..+.++.++..+.+..|.... .+...+.
T Consensus 184 ~~~~L~~L~ls~N~------i~~l~~~~~~-~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~ 253 (394)
T COG4886 184 NLSNLNNLDLSGNK------ISDLPPEIEL-LSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLED--LPESIGN 253 (394)
T ss_pred hhhhhhheeccCCc------cccCchhhhh-hhhhhhhhhcCCcceec-chhhhhcccccccccCCceeee--ccchhcc
Confidence 77777777776521 0011 1123 45566777766643332 3455566666666655444322 1233445
Q ss_pred CCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 165 FPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 165 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
.++++.|++++|. +..++. .+....++.|++++
T Consensus 254 l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 254 LSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ccccceecccccc-cccccc-ccccCccCEEeccC
Confidence 5667777776666 555544 44556666666654
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-07 Score=56.30 Aligned_cols=60 Identities=28% Similarity=0.447 Sum_probs=44.9
Q ss_pred CCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
++|+.|++++|++...+...+.++++|++|++++|.+.. .-+....++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888888877888888888888888777743 112234678888888888775
|
... |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-08 Score=75.52 Aligned_cols=188 Identities=22% Similarity=0.235 Sum_probs=102.6
Q ss_pred HHHhccccccEEEeCceeeccc----cccccccCCCcceeccccc--Cc--h--------hHHHcCcCCccceeeEEeec
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAH----PGKYCSALENLNFISALHL--SS--C--------TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~~~~~--~~--~--------~~~~l~~l~~L~~L~l~~~~ 74 (202)
+.+..+..++.+++++|++... +.+.+...++|+.-+..+. .. . ...|+...++|++++|++|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455678899999999655433 2233455555555442221 11 1 33446677899999999987
Q ss_pred --CchHHHHHHHhccCCCccEEEeecCcchhh--------c------------------hhc--cc----------cccc
Q 037964 75 --SHYQSVLSKSLCELRCLDSLKLVNESNMLG--------I------------------LQI--DI----------AEYQ 114 (202)
Q Consensus 75 --~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------~------------------~~~--~~----------~~~~ 114 (202)
......+-+.+.++..|++|.++++.-... + ..| +. .++.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 223455666777888999999987431110 0 000 00 2333
Q ss_pred CCCCccEEEeeCCCCCCCCC----ccccCCCCcceEEeccCccCCce---EEEcCCCCCcccEEEeccccCccc---e--
Q 037964 115 FPQSLTHLSLTNTKLKDDPM----PTLEKLPHLLVLKLKQNSFSRRK---LACCSGGFPCLKFLHLKSMLWLDE---W-- 182 (202)
Q Consensus 115 ~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~---~-- 182 (202)
.+.|+.+.++.|.+..... ..+..+++|+.|++.+|.|.-+. +......+++|+.|++.+|- ++. +
T Consensus 184 -~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~ 261 (382)
T KOG1909|consen 184 -HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAF 261 (382)
T ss_pred -ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHH
Confidence 4566666666665544332 23446666666666666654322 11122345666666666665 321 1
Q ss_pred -eeCCCccccccEEeeecC
Q 037964 183 -TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 183 -~~~~~~~~~L~~L~i~~c 200 (202)
..-....|.|+.+.+.+|
T Consensus 262 ~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHhccCCCCceeccCcc
Confidence 111133666666666554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-07 Score=79.86 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=74.0
Q ss_pred cceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 65 LQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
++.|++.++. ..+.+|..++++++|+.|+++++. +.|.+ .+.. +++|+.|++++|++.+..+..++++++
T Consensus 420 v~~L~L~~n~--L~g~ip~~i~~L~~L~~L~Ls~N~-----l~g~iP~~~~~-l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG--LRGFIPNDISKLRHLQSINLSGNS-----IRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCC--ccccCCHHHhCCCCCCEEECCCCc-----ccCcCChHHhC-CCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 5667777766 666777888888888888887643 23343 4566 788888888888888777778888888
Q ss_pred cceEEeccCccCCceEEEcCC-CCCcccEEEeccccCcc
Q 037964 143 LLVLKLKQNSFSRRKLACCSG-GFPCLKFLHLKSMLWLD 180 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~ 180 (202)
|+.|++++|.+.+.. |...+ .+.++..+.+.+|..+.
T Consensus 492 L~~L~Ls~N~l~g~i-P~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 492 LRILNLNGNSLSGRV-PAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCEEECcCCcccccC-ChHHhhccccCceEEecCCcccc
Confidence 888888877776643 32222 23455677777766443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-07 Score=73.74 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=122.3
Q ss_pred HHHhccccccEEEeCceeeccccccc----cccCCCcceecccccCch------h---------HHHcCcCCccceeeEE
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGKY----CSALENLNFISALHLSSC------T---------RDILGRLPNLQSLKIF 71 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~~~------~---------~~~l~~l~~L~~L~l~ 71 (202)
+++...++|++++||.|.+....+.. +.++..|++|++.++.-. . ....+.-++||.+...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34456679999999997665554443 566788999986665311 1 1113455889999999
Q ss_pred eecCc--hHHHHHHHhccCCCccEEEeecCcchhhchhcc-c---ccccCCCCccEEEeeCCCCCCCC----CccccCCC
Q 037964 72 EDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQID-I---AEYQFPQSLTHLSLTNTKLKDDP----MPTLEKLP 141 (202)
Q Consensus 72 ~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~---~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~ 141 (202)
.|+.. --..+...+...+.|+.+.++.+.-.. .|. . .+.. +++|+.|++..|-++... ...+..++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccC---chhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 88722 233455677778899999887521000 011 1 4566 899999999999776544 33556788
Q ss_pred CcceEEeccCccCCceEE----EcCCCCCcccEEEeccccCccc-----eeeCCCccccccEEeeecCC
Q 037964 142 HLLVLKLKQNSFSRRKLA----CCSGGFPCLKFLHLKSMLWLDE-----WTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~i~~c~ 201 (202)
+|+.+++.++....++.. ...+.+|+|+.|.+..|. .+. +.......|.|.+|++++|.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999987766543321 122348999999988887 321 12223447889999988874
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-07 Score=76.08 Aligned_cols=160 Identities=24% Similarity=0.248 Sum_probs=109.1
Q ss_pred CCCccccccHHHhccc-cccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMH-KLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
..+.++++|+....+. +|+.|++++ +....+|..++.+++|+.|........ +.. .+.+++|+.|+++++. .
T Consensus 124 ~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~---i 198 (394)
T COG4886 124 DNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNK---I 198 (394)
T ss_pred CCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCc---c
Confidence 4678899999888885 999999999 777777767899999999986665554 433 4588999999999995 7
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR 156 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 156 (202)
..+|..+.....|+.+.+.++... .. .+.. +.++..+.+..+++... +..++.+++++.|+++.|....-
T Consensus 199 ~~l~~~~~~~~~L~~l~~~~N~~~------~~~~~~~~-~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 199 SDLPPEIELLSALEELDLSNNSII------ELLSSLSN-LKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCchhhhhhhhhhhhhhcCCcce------ecchhhhh-cccccccccCCceeeec-cchhccccccceecccccccccc
Confidence 778877777777888888754200 00 2334 55555555555555443 34555666677777765554321
Q ss_pred eEEEcCCCCCcccEEEecccc
Q 037964 157 KLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~ 177 (202)
.. .+.+.+++.|++..+.
T Consensus 271 --~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 271 --SS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred --cc-ccccCccCEEeccCcc
Confidence 11 4556666677666654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.8e-07 Score=77.80 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=61.4
Q ss_pred ccEEEeCceeeccccccccccCCCcceecccccC--ch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEE
Q 037964 19 LRHLNFGYIKLHAHPGKYCSALENLNFISALHLS--SC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLK 95 (202)
Q Consensus 19 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (202)
++.|++++|...+.+|..++.+++|+.|++.... +. |.. ++++++|+.|++++|. ..+.+|+.++++++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~--lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNS--FNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCC--CCCCCchHHhcCCCCCEEE
Confidence 5667777755566667667777777777644433 23 555 7777777777777776 5666777777777777777
Q ss_pred eecCcchhhchhccc--ccccCCCCccEEEeeCCC
Q 037964 96 LVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTK 128 (202)
Q Consensus 96 l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~ 128 (202)
++++. +.|.+ .+.....++..+++.+|.
T Consensus 497 Ls~N~-----l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNS-----LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCc-----ccccCChHHhhccccCceEEecCCc
Confidence 76543 23333 122212345566666654
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-07 Score=72.37 Aligned_cols=107 Identities=24% Similarity=0.337 Sum_probs=56.6
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+.=+|++|.|+++.|+ . ..+ +.++.+++|+.||++++. +.... |-.. +-+.++|.++.|.+.. ...+
T Consensus 303 vKL~Pkir~L~lS~N~--i-~~v-~nLa~L~~L~~LDLS~N~-----Ls~~~Gwh~K-LGNIKtL~La~N~iE~--LSGL 370 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNR--I-RTV-QNLAELPQLQLLDLSGNL-----LAECVGWHLK-LGNIKTLKLAQNKIET--LSGL 370 (490)
T ss_pred hhhccceeEEeccccc--e-eee-hhhhhcccceEeecccch-----hHhhhhhHhh-hcCEeeeehhhhhHhh--hhhh
Confidence 4444666666666664 1 111 225556666666665421 00000 4444 5566666666665544 3455
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+++-+|+.|++.+|.+...+-....+.+|.|+.+.+.+|+
T Consensus 371 ~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5666666666666665432222344556666666666666
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-08 Score=81.97 Aligned_cols=135 Identities=22% Similarity=0.317 Sum_probs=74.3
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.+.+-.||.++.++..|.+|+++. |....+|.++..+ -|+.|...+.... |.+ ++-+..|..|+.+.|. ...
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~ne---i~s 180 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNE---IQS 180 (722)
T ss_pred hccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEecCccccCCcc-cccchhHHHhhhhhhh---hhh
Confidence 344555666666666666666666 5555566555444 2444443333322 555 6655666666666663 556
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc--ccccC-CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQF-PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
+|..++.+.+|+.|.+.++ .+ ....+ --.|.+||++.|++...| -.|.++..|++|.+..|.+
T Consensus 181 lpsql~~l~slr~l~vrRn---------~l~~lp~El~~LpLi~lDfScNkis~iP-v~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRN---------HLEDLPEELCSLPLIRLDFSCNKISYLP-VDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred chHHhhhHHHHHHHHHhhh---------hhhhCCHHHhCCceeeeecccCceeecc-hhhhhhhhheeeeeccCCC
Confidence 6666666666666655431 11 01110 114566666666666653 3556666677777765554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-07 Score=72.86 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=108.0
Q ss_pred HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch----hHHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC----TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
.-++.+++|+.|.+.++.....+...++.=.+|+.++..-.++. ..-.+.+++.|..|+++++... .+.+...+.
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~-~~~Vtv~V~ 282 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF-TEKVTVAVA 282 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc-chhhhHHHh
Confidence 34678899999999994446666667777788888885555443 4444778999999999998622 222333333
Q ss_pred cC-CCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCC-CCCCCccccCCCCcceEEeccCccCCceEEEcC
Q 037964 87 EL-RCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKL-KDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCS 162 (202)
Q Consensus 87 ~l-~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 162 (202)
.. ++|+.|+++++-..+. ...+ -... +++|.+|||++|.. +.+...++.+++.|++++++.+-.....-....
T Consensus 283 hise~l~~LNlsG~rrnl~--~sh~~tL~~r-cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l 359 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQ--KSHLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL 359 (419)
T ss_pred hhchhhhhhhhhhhHhhhh--hhHHHHHHHh-CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeee
Confidence 33 5788888876311000 0011 2344 89999999999844 444455677999999999974333222223345
Q ss_pred CCCCcccEEEecccc
Q 037964 163 GGFPCLKFLHLKSML 177 (202)
Q Consensus 163 ~~~~~L~~L~l~~~~ 177 (202)
...|+|.+|++.+|-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 678999999999875
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-06 Score=51.37 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=35.5
Q ss_pred ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCc
Q 037964 111 AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNS 152 (202)
Q Consensus 111 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 152 (202)
++.. +++|+.|++++|++...++..+.++++|++|++++|.
T Consensus 20 ~f~~-l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 20 SFSN-LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTT-GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred HHcC-CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4666 8899999999999988888899999999999998775
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-06 Score=67.14 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=76.3
Q ss_pred ccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccE
Q 037964 15 KMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDS 93 (202)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (202)
..+.|+.+|+++ |....+-..+.-++.++.|+...++.. +.. +..+++|..|++++|. ...+-..=.++.+.+.
T Consensus 282 TWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~---Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL---LAECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch---hHhhhhhHhhhcCEee
Confidence 345667777777 555555555555667777665554444 555 6667777777777774 3333333445556666
Q ss_pred EEeecCc-chhhchhcccccccCCCCccEEEeeCCCCCCC-CCccccCCCCcceEEeccCccC
Q 037964 94 LKLVNES-NMLGILQIDIAEYQFPQSLTHLSLTNTKLKDD-PMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 94 L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
|.+..+. +. ++ .+.. +.+|..|++++|++... ....++++|.|+.+.+.+|...
T Consensus 357 L~La~N~iE~---LS---GL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIET---LS---GLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhh---hh---hhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6665421 00 11 2445 66677777777766542 2456677777777777766654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.4e-07 Score=73.65 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.|.+..+|..+..|+ |+.|.+++ |....+|.+++.+..|.+|+...+..- +++ ++.+.+|+.|++..|. ..
T Consensus 129 s~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~---l~ 202 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNH---LE 202 (722)
T ss_pred ccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhh---hh
Confidence 4566666777666554 67777777 667777777776667777664444432 677 7777777777777774 56
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCc--cccCCCCcceEEec
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMP--TLEKLPHLLVLKLK 149 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~ 149 (202)
.+|..+..+ .|.+||++.+.- ..+ .+.. +.+|+.|.|.+|.+..-+.. .-+++.--++|+.+
T Consensus 203 ~lp~El~~L-pLi~lDfScNki------s~iPv~fr~-m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 203 DLPEELCSL-PLIRLDFSCNKI------SYLPVDFRK-MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred hCCHHHhCC-ceeeeecccCce------eecchhhhh-hhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 667666644 466677763210 011 4455 67777777777766553321 22233334455554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-06 Score=74.57 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=15.5
Q ss_pred CccceeeEEeecCchHHHHHHHhccCCCccEEEeec
Q 037964 63 PNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 98 (202)
|+|+.|.+.+.. ...+++.....++++|..||+++
T Consensus 148 PsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 148 PSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred cccceEEecCce-ecchhHHHHhhccCccceeecCC
Confidence 555555554432 11223334444445555555544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.2e-07 Score=75.77 Aligned_cols=152 Identities=23% Similarity=0.243 Sum_probs=80.2
Q ss_pred cHHHhccccccEEEeCceeeccccccccccC-CCcceeccccc-----------Cc-------h---------------h
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSAL-ENLNFISALHL-----------SS-------C---------------T 55 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~~~~~-----------~~-------~---------------~ 55 (202)
|-+|..+..||+|.+.+|+... .+++..+ .+|++|--.+. .+ | +
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 6677888999999999965433 3333333 23443321000 00 0 2
Q ss_pred HHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCC
Q 037964 56 RDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDD 132 (202)
Q Consensus 56 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~ 132 (202)
++.+.=++.|+.|++++|+ +.+ +- .+..+++|++||++++. -..+ .+.. .+|+.|.+++|-+..
T Consensus 180 D~SLqll~ale~LnLshNk--~~~-v~-~Lr~l~~LkhLDlsyN~------L~~vp~l~~~g--c~L~~L~lrnN~l~t- 246 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNK--FTK-VD-NLRRLPKLKHLDLSYNC------LRHVPQLSMVG--CKLQLLNLRNNALTT- 246 (1096)
T ss_pred HHHHHHHHHhhhhccchhh--hhh-hH-HHHhcccccccccccch------hccccccchhh--hhheeeeecccHHHh-
Confidence 2223334566666666664 222 11 55566666666666521 0000 1111 236666666665554
Q ss_pred CCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 133 PMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 133 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
...+.++.+|+.|++++|.+.+-.--.+...+..|+.|++.+|+
T Consensus 247 -L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 247 -LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 34555677777777777776542211233446677777777777
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.2e-05 Score=59.77 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=56.9
Q ss_pred HHhccccccEEEeCceeecccccc----ccccCCCcceeccccc--Cc--h--------hHHHcCcCCccceeeEEeec-
Q 037964 12 DIWKMHKLRHLNFGYIKLHAHPGK----YCSALENLNFISALHL--SS--C--------TRDILGRLPNLQSLKIFEDL- 74 (202)
Q Consensus 12 ~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~~~~~--~~--~--------~~~~l~~l~~L~~L~l~~~~- 74 (202)
.+..+..+..+++++|++...-.. .|.+-.+|+.-+..+. .. . ...|+.++|+|++.+++.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 355678899999999655443322 3444444444331111 10 1 22347889999999999987
Q ss_pred -CchHHHHHHHhccCCCccEEEeecC
Q 037964 75 -SHYQSVLSKSLCELRCLDSLKLVNE 99 (202)
Q Consensus 75 -~~~~~~~~~~l~~l~~L~~L~l~~~ 99 (202)
......+-+.+++...|.+|.++++
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecC
Confidence 2235566677888899999999885
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.6e-05 Score=66.82 Aligned_cols=126 Identities=18% Similarity=0.143 Sum_probs=75.3
Q ss_pred CccceeeEEeecCchHHHHHHHhcc-CCCccEEEeec----CcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 63 PNLQSLKIFEDLSHYQSVLSKSLCE-LRCLDSLKLVN----ESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~----~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
.+|++|++++.. ......+..++. +|.|++|.+.+ +++... .... +++|..||+++++++.. ..+
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~------lc~s-FpNL~sLDIS~TnI~nl--~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ------LCAS-FPNLRSLDISGTNISNL--SGI 191 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHH------Hhhc-cCccceeecCCCCccCc--HHH
Confidence 678888888753 335556666664 58888888865 111100 1334 78888888888887763 677
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce-------eeCCCccccccEEeeec
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW-------TMGTKATWKLEHLIINP 199 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~~~~~~L~~L~i~~ 199 (202)
+++.+|+.|.+.+-.+....--...-.+.+|+.|++++......- .. ...+|.|+.|+.++
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLPELRFLDCSG 259 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh-cccCccccEEecCC
Confidence 788888888887444432100112335777888888775533211 11 13467777777654
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=1.2e-05 Score=66.00 Aligned_cols=166 Identities=22% Similarity=0.196 Sum_probs=89.1
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.++.|..+...+..+++|++|++++ |....+. ++..+..|+.|+...+... ... +..+++|+.+++++|+ ...
T Consensus 103 ~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~--i~~- 176 (414)
T KOG0531|consen 103 YDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNR--IVD- 176 (414)
T ss_pred cccchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheeccCcchhccC-CccchhhhcccCCcch--hhh-
Confidence 3455666655566777788888887 5544443 3555666666665555444 555 6667788888888775 222
Q ss_pred HHHH-hccCCCccEEEeecCc----chhh----c-----hhccc-ccccC--CCC--ccEEEeeCCCCCCCCCccccCCC
Q 037964 81 LSKS-LCELRCLDSLKLVNES----NMLG----I-----LQIDI-AEYQF--PQS--LTHLSLTNTKLKDDPMPTLEKLP 141 (202)
Q Consensus 81 ~~~~-l~~l~~L~~L~l~~~~----~~~~----~-----~~~~~-~~~~~--l~~--L~~L~l~~~~~~~~~~~~l~~l~ 141 (202)
+... +..+.+++.+.+..+. +.++ + ..+.+ .+..+ ... |+.+++.++.+...+ ..+..+.
T Consensus 177 ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~ 255 (414)
T KOG0531|consen 177 IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP-EGLENLK 255 (414)
T ss_pred hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc-ccccccc
Confidence 2221 4566666666665521 1100 0 01111 11110 222 667777777666532 4455666
Q ss_pred CcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 142 HLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
.++.+++..+..... ......+.+..++..++.
T Consensus 256 ~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 256 NLPVLDLSSNRISNL---EGLERLPKLSELWLNDNK 288 (414)
T ss_pred cccccchhhcccccc---ccccccchHHHhccCcch
Confidence 677777764444321 122345555556555555
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=1.1e-05 Score=66.22 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=28.3
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeec
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 74 (202)
+..+++|..|++.. +....+...+..+++|+.|+....... ... +..++.|+.|++.+|.
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL 151 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc
Confidence 44555555555555 333333322444555555543333333 333 4445555555555553
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00021 Score=39.18 Aligned_cols=37 Identities=41% Similarity=0.696 Sum_probs=25.7
Q ss_pred CCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
++|+.|++++|++...+ ..++++++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence 46788888888888643 34788888888888877664
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00012 Score=56.62 Aligned_cols=86 Identities=27% Similarity=0.328 Sum_probs=61.6
Q ss_pred cCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-cc-ccCCCCccEEEeeCCCCCCCCCcc-c
Q 037964 61 RLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AE-YQFPQSLTHLSLTNTKLKDDPMPT-L 137 (202)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-~~~l~~L~~L~l~~~~~~~~~~~~-l 137 (202)
..+.++.+++.+|....+.++...+.++|.|+.|+++.++ +...| .. .. ..+|+.|.|.+..++...... +
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-----L~s~I~~lp~p-~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-----LSSDIKSLPLP-LKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-----CCCccccCccc-ccceEEEEEcCCCCChhhhhhhh
Confidence 3478899999999755677888888999999999998643 11112 11 23 568888888888877655443 4
Q ss_pred cCCCCcceEEeccCc
Q 037964 138 EKLPHLLVLKLKQNS 152 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~ 152 (202)
..+|.++.|+++.|.
T Consensus 143 ~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNS 157 (418)
T ss_pred hcchhhhhhhhccch
Confidence 478888888888774
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0001 Score=56.92 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=83.7
Q ss_pred HHHhccccccEEEeCceeeccccccccccCCCcceecccccC-ch--hHHHcCcCCccceeeEEeecCchHHHHH---HH
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS-SC--TRDILGRLPNLQSLKIFEDLSHYQSVLS---KS 84 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~ 84 (202)
.-+.+|+.|+.|+++.|-....+...-..+.+|++|...... .| ....+..+|.++.|.++.|+ .+.+. ..
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~---~rq~n~Dd~c 167 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS---LRQLNLDDNC 167 (418)
T ss_pred HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch---hhhhcccccc
Confidence 345688888888888832222221111344566666543332 22 33336778888888888874 11111 11
Q ss_pred hccC-CCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCC-ccccCCCCcceEEeccCccCCceEEEc
Q 037964 85 LCEL-RCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPM-PTLEKLPHLLVLKLKQNSFSRRKLACC 161 (202)
Q Consensus 85 l~~l-~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~ 161 (202)
+..+ +.+..++...+... .+-.+ -+...++++..+-+..|++..... .....+|.+..|.++.+++....-.-.
T Consensus 168 ~e~~s~~v~tlh~~~c~~~---~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~ 244 (418)
T KOG2982|consen 168 IEDWSTEVLTLHQLPCLEQ---LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA 244 (418)
T ss_pred ccccchhhhhhhcCCcHHH---HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH
Confidence 1122 13444444332110 00000 122226777777777776665432 233356667677777665532110112
Q ss_pred CCCCCcccEEEeccccCcc
Q 037964 162 SGGFPCLKFLHLKSMLWLD 180 (202)
Q Consensus 162 ~~~~~~L~~L~l~~~~~l~ 180 (202)
..+|+.|..|.+..++.+.
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HcCCchhheeeccCCcccc
Confidence 3468888888877777444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00067 Score=49.58 Aligned_cols=82 Identities=21% Similarity=0.091 Sum_probs=44.2
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce----eeCCCcccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW----TMGTKATWK 191 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~~ 191 (202)
++.|.+|.+.+|.+....+....-+|+|..|.+.+|++..-.=--....+|.|++|.+-+|+ .+.. -.....+|+
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPS 141 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCc
Confidence 56666666666666665555545566666666665554321101123346666666666665 3221 112344666
Q ss_pred ccEEeee
Q 037964 192 LEHLIIN 198 (202)
Q Consensus 192 L~~L~i~ 198 (202)
|+.|++.
T Consensus 142 l~~LDF~ 148 (233)
T KOG1644|consen 142 LRTLDFQ 148 (233)
T ss_pred ceEeehh
Confidence 6666654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00033 Score=38.43 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=27.4
Q ss_pred CCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce
Q 037964 141 PHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW 182 (202)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 182 (202)
++|++|++++|.+.. ++...+.+++|+.|++++|+ +..+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC-CCCC
Confidence 478889998888764 34346788999999999887 6544
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=2.5e-05 Score=66.75 Aligned_cols=123 Identities=21% Similarity=0.200 Sum_probs=80.9
Q ss_pred ccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 64 NLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
.|...+.+.|+ ...+-.++.-++.++.|+++++.- ..+ .+.. ++.|++|||++|.+...+--...++ +
T Consensus 165 ~L~~a~fsyN~---L~~mD~SLqll~ale~LnLshNk~------~~v~~Lr~-l~~LkhLDlsyN~L~~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNR---LVLMDESLQLLPALESLNLSHNKF------TKVDNLRR-LPKLKHLDLSYNCLRHVPQLSMVGC-K 233 (1096)
T ss_pred hHhhhhcchhh---HHhHHHHHHHHHHhhhhccchhhh------hhhHHHHh-cccccccccccchhccccccchhhh-h
Confidence 45666777774 666777888889999999985320 011 3555 8899999999998887653333344 4
Q ss_pred cceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce-ee-CCCccccccEEeeecCC
Q 037964 143 LLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW-TM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~-~~~~~~~L~~L~i~~c~ 201 (202)
|..|.+++|.... -...+++.+|+.|++++|- +.+. .. ..+.+..|..|.+.++|
T Consensus 234 L~~L~lrnN~l~t---L~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 LQLLNLRNNALTT---LRGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred heeeeecccHHHh---hhhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999998666542 1234678899999999876 3221 11 12445567777776654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0046 Score=50.43 Aligned_cols=135 Identities=17% Similarity=0.071 Sum_probs=68.7
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCC
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELR 89 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 89 (202)
+..+.++++|++++ +....+|. + -.+|++|...+...- |.. + -++|++|++.+|. ....+|.
T Consensus 48 ~~~~~~l~~L~Is~-c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs--~L~sLP~------ 112 (426)
T PRK15386 48 IEEARASGRLYIKD-CDIESLPV-L--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCP--EISGLPE------ 112 (426)
T ss_pred HHHhcCCCEEEeCC-CCCcccCC-C--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcc--ccccccc------
Confidence 45678999999999 45556662 2 235777764432211 322 2 1578899998875 3444554
Q ss_pred CccEEEeecCcchhhchhcccccccCCCCccEEEeeCCC-CCCCCCccccCC-CCcceEEeccCccCCceEEEcCCCCCc
Q 037964 90 CLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTK-LKDDPMPTLEKL-PHLLVLKLKQNSFSRRKLACCSGGFPC 167 (202)
Q Consensus 90 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~ 167 (202)
.|+.|++.... ...+..++++|+.|.+.+++ ....... ..+ ++|++|+++++.... + +.+-..+
T Consensus 113 sLe~L~L~~n~--------~~~L~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~--L--P~~LP~S 178 (426)
T PRK15386 113 SVRSLEIKGSA--------TDSIKNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNII--L--PEKLPES 178 (426)
T ss_pred ccceEEeCCCC--------CcccccCcchHhheeccccccccccccc--cccCCcccEEEecCCCccc--C--ccccccc
Confidence 45566664311 00123325567777664322 1110000 012 357777776444221 1 1112246
Q ss_pred ccEEEeccc
Q 037964 168 LKFLHLKSM 176 (202)
Q Consensus 168 L~~L~l~~~ 176 (202)
|+.|++..+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 777776654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00021 Score=53.99 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=57.7
Q ss_pred ccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccC
Q 037964 38 SALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQF 115 (202)
Q Consensus 38 ~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~ 115 (202)
....+|+.+...++.-. ... +..|++|++|.++.|.......+.-...++++|++++++++.-. .--.+ ....
T Consensus 40 d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---~lstl~pl~~- 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---DLSTLRPLKE- 114 (260)
T ss_pred ccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---cccccchhhh-
Confidence 34445555554444433 555 66778888888888742255555555566677777777653100 00000 3344
Q ss_pred CCCccEEEeeCCCCCCCC---CccccCCCCcceEEec
Q 037964 116 PQSLTHLSLTNTKLKDDP---MPTLEKLPHLLVLKLK 149 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~ 149 (202)
+.+|..|++.+|...... -..+.-+++|++|+-.
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 566677777777555421 1133345666665553
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0034 Score=45.99 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=20.7
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+..++.|..|.+..|+ ..+.-|.--..+++|+.|.++
T Consensus 60 lp~l~rL~tLll~nNr--It~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR--ITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred CCCccccceEEecCCc--ceeeccchhhhccccceEEec
Confidence 6666777777777776 444333333333445555554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.00027 Score=48.62 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=40.3
Q ss_pred ccccEEEeCceeecccccccccc-CCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSA-LENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDS 93 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~-l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (202)
..|+..++++ |....+|+.+.. .+-+++|+..+.... |.+ +..++.||.|+++.|. ....|..+.++.++..
T Consensus 53 ~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~---l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNP---LNAEPRVIAPLIKLDM 127 (177)
T ss_pred ceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCc---cccchHHHHHHHhHHH
Confidence 3444456666 444444444322 234455543333322 666 6667777777777664 4445555555555555
Q ss_pred EEee
Q 037964 94 LKLV 97 (202)
Q Consensus 94 L~l~ 97 (202)
|+..
T Consensus 128 Lds~ 131 (177)
T KOG4579|consen 128 LDSP 131 (177)
T ss_pred hcCC
Confidence 5554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0031 Score=48.42 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=18.6
Q ss_pred CCccEEEeeCCCCCCCCCc-----cccCCCCcceEEeccCcc
Q 037964 117 QSLTHLSLTNTKLKDDPMP-----TLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~ 153 (202)
.+|+.+.+..|.+...+.. .+..+.+|+.|++++|.+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 4555555655555543322 123445566666655554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0012 Score=53.22 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=42.9
Q ss_pred CCCccEEEeeCCCCCCCC-Ccccc-CCCCcceEEeccCcc-CCce---EEEcCCCCCcccEEEeccccCccceeeC-CCc
Q 037964 116 PQSLTHLSLTNTKLKDDP-MPTLE-KLPHLLVLKLKQNSF-SRRK---LACCSGGFPCLKFLHLKSMLWLDEWTMG-TKA 188 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~-~~~l~-~l~~L~~L~l~~~~~-~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~ 188 (202)
.+.|+.+++..+....+. ...++ +++.|+.+.+++... .+++ +.........|+.+.+.+++...+-..+ ...
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 455666666555333222 22222 566777777764332 2221 1122234666777777777754432211 234
Q ss_pred cccccEEeeecC
Q 037964 189 TWKLEHLIINPC 200 (202)
Q Consensus 189 ~~~L~~L~i~~c 200 (202)
++.|+.+++.+|
T Consensus 425 c~~Leri~l~~~ 436 (483)
T KOG4341|consen 425 CRNLERIELIDC 436 (483)
T ss_pred Ccccceeeeech
Confidence 667777776665
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0015 Score=50.29 Aligned_cols=90 Identities=20% Similarity=0.037 Sum_probs=60.3
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch----hHHHcCcCCccceeeEEeecCch-
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC----TRDILGRLPNLQSLKIFEDLSHY- 77 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~- 77 (202)
|+.+.+|.- ..+|+.|+.|.|+- |....+. .+..+++|++|++-.+.+. ..- +.++|+||.|.|..|....
T Consensus 28 g~~L~DIsi-c~kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 28 GCGLDDISI-CEKMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred CCCccHHHH-HHhcccceeEEeec-cccccch-hHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccc
Confidence 345555433 67899999999999 5555554 3788889999886555433 444 8899999999999887221
Q ss_pred --HHHHHHHhccCCCccEEEe
Q 037964 78 --QSVLSKSLCELRCLDSLKL 96 (202)
Q Consensus 78 --~~~~~~~l~~l~~L~~L~l 96 (202)
...-...+..+|+|+.||=
T Consensus 104 ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cchhHHHHHHHHcccchhccC
Confidence 1222234556667776653
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0034 Score=47.53 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=36.6
Q ss_pred CCCccEEEeeCC--CCCCCCCcccc-CCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 116 PQSLTHLSLTNT--KLKDDPMPTLE-KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 116 l~~L~~L~l~~~--~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+++|+.|.++.| ++... +..+. .+|+|++++++.|....-.--.....+++|..|++.+|+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 567778888777 44443 33333 567888888877776531101123346667777777776
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.00029 Score=48.45 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccC
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLW 178 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 178 (202)
..+|+..+|++|.+...+...-.++|.++.+++.+|.+.+ +|......|.|+.|+++.|+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCcc
Confidence 5677888888888887765555577788888888666643 344456678888888888873
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.00029 Score=56.63 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=34.0
Q ss_pred HhccccccEEEeCceeecccc-cccc-ccCCCcceecccccCch----hHHHcCcCCccceeeEEeec
Q 037964 13 IWKMHKLRHLNFGYIKLHAHP-GKYC-SALENLNFISALHLSSC----TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~-p~~l-~~l~~L~~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~ 74 (202)
-.+++++++|.+.+|.....- -..+ ..+.+|+++.......+ ....-..+++|.+++++++.
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 456788888888884322111 1111 44566777664443222 22212356778888887776
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.00027 Score=54.20 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
++.|+.|.|+.|+++. ...+.++.+|+.|++..|++..-.--.-..++|+|+.|++..|+
T Consensus 40 Mp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 3444444444444443 23344444444444444443221101122344555555554444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.017 Score=47.27 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=20.8
Q ss_pred CcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 166 PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
++|++|.+.+|... ..+ .+-..+|+.|++..+
T Consensus 156 sSLk~L~Is~c~~i-~LP--~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILP--EKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCc--ccccccCcEEEeccc
Confidence 57999999988733 222 122347888887654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0086 Score=27.39 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=15.9
Q ss_pred cccEEEeCceeecccccccccc
Q 037964 18 KLRHLNFGYIKLHAHPGKYCSA 39 (202)
Q Consensus 18 ~L~~L~l~~~~~~~~~p~~l~~ 39 (202)
+|++|++++|.+. .+|.++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5899999995445 78876654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0016 Score=54.17 Aligned_cols=136 Identities=19% Similarity=0.132 Sum_probs=75.3
Q ss_pred cCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecC-cchhhchhccc---ccccCCCCccEEEeeCCC-CCCCCCc
Q 037964 61 RLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNE-SNMLGILQIDI---AEYQFPQSLTHLSLTNTK-LKDDPMP 135 (202)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~-~~~~~~~ 135 (202)
..+.|+.+.+..+.......+-......++|+.|+++.+ ..... .+.. .... +++|+.++++++. +++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~-~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL--SPLLLLLLLSI-CRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc--chhHhhhhhhh-cCCcCccchhhhhccCchhHH
Confidence 467777777776642222224556666778888887641 00000 0000 1223 6778888888876 5655555
Q ss_pred ccc-CCCCcceEEeccCc-cCCceEEEcCCCCCcccEEEeccccCccc--eeeCCCccccccEEeeec
Q 037964 136 TLE-KLPHLLVLKLKQNS-FSRRKLACCSGGFPCLKFLHLKSMLWLDE--WTMGTKATWKLEHLIINP 199 (202)
Q Consensus 136 ~l~-~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~ 199 (202)
.++ .+++|+.|.+..+. ..+..+......+++|++|+++.|..+.+ +......+|.++.+.+..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 555 47788888865333 34444444455678888888888775422 111123355555554443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.0033 Score=52.22 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=19.5
Q ss_pred CCccceeeEEeecCchHHHHHHHhccCCCccEEEeec
Q 037964 62 LPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 98 (202)
+++|+.|.+..+.......+.....+++.|+.|+++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 5566666654443223344444455556666666655
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.00094 Score=48.77 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=49.2
Q ss_pred ccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc-CCceEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEe
Q 037964 119 LTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF-SRRKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLI 196 (202)
Q Consensus 119 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~ 196 (202)
++.++=+++.+...+.+-+.++++++.|++..+.. .+..+....+.+++|+.|+++.|+.+++- -.-...+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45555566666666666677777777777763332 22222333446778888888877765432 11234567777777
Q ss_pred eecCC
Q 037964 197 INPCA 201 (202)
Q Consensus 197 i~~c~ 201 (202)
+.+.+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 66554
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.047 Score=36.81 Aligned_cols=82 Identities=12% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccC
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCEL 88 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 88 (202)
.++.++.+|+.+.+.. . ...++. .+.++.+++.+.....-.. ...++..+++|+.+.+... ....-...+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~---~~~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPNN---LKSIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETST---T-EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-C-eeEeChhhcccccccccccccccccccceeeeeccccccccccccc---cccccccccccc
Confidence 3466777777777765 3 223333 3566667776653322111 3333666666777776432 122122344445
Q ss_pred CCccEEEee
Q 037964 89 RCLDSLKLV 97 (202)
Q Consensus 89 ~~L~~L~l~ 97 (202)
++++.+++.
T Consensus 81 ~~l~~i~~~ 89 (129)
T PF13306_consen 81 TNLKNIDIP 89 (129)
T ss_dssp TTECEEEET
T ss_pred ccccccccC
Confidence 566666553
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.014 Score=42.79 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=52.2
Q ss_pred cceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhc-hhcccccccCCCCccEEEeeCC-CCCCCCCccccCCCC
Q 037964 65 LQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGI-LQIDIAEYQFPQSLTHLSLTNT-KLKDDPMPTLEKLPH 142 (202)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~ 142 (202)
+..++.++.. ...+-.+-+..++.++.|.+.++..+-|| +. .+....++|+.|+|++| +++..+...+.++++
T Consensus 103 IeaVDAsds~--I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSS--IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred EEEEecCCch--HHHHHHHHHhccchhhhheeccccchhhHHHH---HhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 4456665555 55556666666777777777653211110 00 13333678888888877 777777778888888
Q ss_pred cceEEeccCc
Q 037964 143 LLVLKLKQNS 152 (202)
Q Consensus 143 L~~L~l~~~~ 152 (202)
|+.|.+++-.
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 8888886433
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.12 Score=21.91 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=6.3
Q ss_pred cccEEEeccccCccc
Q 037964 167 CLKFLHLKSMLWLDE 181 (202)
Q Consensus 167 ~L~~L~l~~~~~l~~ 181 (202)
+|+.|++++|. ++.
T Consensus 2 ~L~~L~l~~n~-L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTS 15 (17)
T ss_dssp T-SEEEETSS---SS
T ss_pred ccCEEECCCCC-CCC
Confidence 45666666665 443
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.24 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=15.0
Q ss_pred CCCccEEEeeCCCCCCCCCccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+++|+.|++.+|++...+...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567778888887777665444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.24 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=15.0
Q ss_pred CCCccEEEeeCCCCCCCCCccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+++|+.|++.+|++...+...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567778888887777665444
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=87.38 E-value=0.35 Score=22.26 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=13.2
Q ss_pred CCccceeeEEeecCchHHHHHHHhc
Q 037964 62 LPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
+++|++|++++|. ..+.....++
T Consensus 1 ~~~L~~L~l~~n~--i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ--ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB--EHHHHHHHHH
T ss_pred CCCCCEEEccCCc--CCHHHHHHhC
Confidence 3677888888776 6665555543
|
... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=86.68 E-value=0.38 Score=22.70 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=9.9
Q ss_pred cccccEEeeecCCC
Q 037964 189 TWKLEHLIINPCAS 202 (202)
Q Consensus 189 ~~~L~~L~i~~c~~ 202 (202)
+|.|++|++++|++
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 46777787777763
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.41 E-value=0.027 Score=42.42 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=64.1
Q ss_pred cccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 5 FIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 5 ~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
.+.++| .++....+.+.||++. +....+.+.+.-++.+..++....... |.+ ++++..++.+++..| ..+..
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n---~~~~~ 103 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN---NHSQQ 103 (326)
T ss_pred Hhcccchhhhhccceeeeehhhh-hHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc---chhhC
Confidence 345666 4578888889999998 776666666665666666654433333 777 788888888887777 47778
Q ss_pred HHHhccCCCccEEEeecC
Q 037964 82 SKSLCELRCLDSLKLVNE 99 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~ 99 (202)
|.+.++.+++++++.-.+
T Consensus 104 p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred CccccccCCcchhhhccC
Confidence 888888888888877553
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=81.04 E-value=1.9 Score=28.76 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=14.0
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEec
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLK 149 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 149 (202)
++.++.+.+.. .+...+...+..+++|+.+++.
T Consensus 57 ~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 57 CKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccccccc-cccccccccccccccccccccC
Confidence 44555555533 3333333445555666666654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 10/163 (6%)
Query: 14 WKMHKLRHLNFGYIKLHAHP-GKYCSALENLNFIS-ALHLSSCTRDILGRLPNLQSLKIF 71
K+ L+ L F K +LE L+ L C +L+ L
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL--- 378
Query: 72 EDLSH-YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLK 130
DLS +S + L L+ L + + L + + + + ++L +L +++T +
Sbjct: 379 -DLSFNGVITMSSNFLGLEQLEHLDFQH--SNLKQM-SEFSVFLSLRNLIYLDISHTHTR 434
Query: 131 DDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHL 173
L L VLK+ NSF L L FL L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-05
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 18/157 (11%)
Query: 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----TRDILG 60
+ + + +L HL+F + L S +L + L +S I
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 61 RLPNLQSLKIFEDLSH---YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQ 117
L +L+ L ++ ++ L ELR L L L L L
Sbjct: 443 GLSSLEVL----KMAGNSFQENFLPDIFTELRNLTFLDL--SQCQLEQLSPTAFNSL--S 494
Query: 118 SLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154
SL L++ + +LK P ++L L + L N +
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 6e-04
Identities = 30/128 (23%), Positives = 40/128 (31%), Gaps = 10/128 (7%)
Query: 50 HLSSCTRDILGRLPNLQSLKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQ 107
L P LQ L DLS Q++ + L L +L L N + L
Sbjct: 39 PLRHLGSYSFFSFPELQVL----DLSRCEIQTIEDGAYQSLSHLSTLIL--TGNPIQSLA 92
Query: 108 IDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPC 167
+ + SL L T L + L L L + N KL
Sbjct: 93 LGA--FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 168 LKFLHLKS 175
L+ L L S
Sbjct: 151 LEHLDLSS 158
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 10/149 (6%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALH--LSSCTRDILGRLPNLQS 67
PE K+ L+ LN + +L K + NL + + + + + NL +
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 68 LKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLT 125
L DLSH S + +L L L L +N + L+ + + SL L L+
Sbjct: 126 L----DLSHNGLSSTKLGTQVQLENLQELLL--SNNKIQALKSEELDIFANSSLKKLELS 179
Query: 126 NTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154
+ ++K+ + L L L
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 18/173 (10%)
Query: 16 MHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC------TRDILGRLPNLQSLK 69
L LN K+ A L + L L T L N+ +
Sbjct: 380 HSPLHILNLTKNKISKIES---DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI- 435
Query: 70 IFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNT 127
LS+ Y + S + L L L L + + +Q ++LT L L+N
Sbjct: 436 ---YLSYNKYLQLTRNSFALVPSLQRLML--RRVALKNVDSSPSPFQPLRNLTILDLSNN 490
Query: 128 KLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLD 180
+ + LE L L +L L+ N+ +R GG L + L+
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF-LKGLSHLHILN 542
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 29/196 (14%)
Query: 9 TPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----TRDILGRLP 63
T + L+ L + L + S + L ++ L LS+ D+L L
Sbjct: 446 TRNSFALVPSLQRLMLRRVALK-NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
Query: 64 NLQSLKIFEDLSH-------YQSVLSKSLCELRCLDSLKLVN-ESNMLGILQIDIAEYQF 115
L+ L DL H + + L+ L L ++N ESN + +++ ++
Sbjct: 505 KLEIL----DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV--FKD 558
Query: 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHL-- 173
L + L L P L L L++N + + F L L +
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Query: 174 -------KSMLWLDEW 182
+S+ W W
Sbjct: 619 NPFDCTCESIAWFVNW 634
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 18/174 (10%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENL-------NFISALHLSSCTRDILGRL 62
+ L HLN + + L NL +F S L++ T L
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA-H 380
Query: 63 PNLQSLKIFEDLSHYQ--SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLT 120
L L +L+ + + S + L L+ L L N +G + E++ +++
Sbjct: 381 SPLHIL----NLTKNKISKIESDAFSWLGHLEVLDL--GLNEIGQE-LTGQEWRGLENIF 433
Query: 121 HLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR-RKLACCSGGFPCLKFLHL 173
+ L+ K + +P L L L++ + L L L
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 10/174 (5%)
Query: 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLH-AHPGKYCSALENLNFIS-ALHLSSCTRDILG 60
L K+ L+ L F K A +LE L+ L C
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 61 RLPNLQSLKIFEDLSH-YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSL 119
+L+ L DLS +S + L L+ L + + L + + + + ++L
Sbjct: 371 GTTSLKYL----DLSFNGVITMSSNFLGLEQLEHLDFQH--SNLKQM-SEFSVFLSLRNL 423
Query: 120 THLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHL 173
+L +++T + L L VLK+ NSF L L FL L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 18/176 (10%)
Query: 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----TRDILG 60
+ + + +L HL+F + L S +L + L +S I
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 61 RLPNLQSLKIFEDLSH---YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQ 117
L +L+ L ++ ++ L ELR L L L L Q+ +
Sbjct: 443 GLSSLEVL----KMAGNSFQENFLPDIFTELRNLTFLDL--SQCQLE--QLSPTAFNSLS 494
Query: 118 SLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHL 173
SL L++++ + L L VL N K L FL+L
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 10/161 (6%)
Query: 16 MHKLRHLNFGYIKL-HAHPGKYCSALENLNFIS-ALHLSSCTRDILGRLPNLQSLKIFED 73
+ L+ L K + +L L+ AL S C +L+ L D
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL----D 382
Query: 74 LSH-YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDD 132
LS ++S + L L L + + L + + + + + L +L ++ T K D
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQH--STLKRV-TEFSAFLSLEKLLYLDISYTNTKID 439
Query: 133 PMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHL 173
L L LK+ NSF L+ L FL L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 12/154 (7%)
Query: 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----TRDILG 60
+ + +L+HL+F + L SA +L + L +S I
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVT--EFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445
Query: 61 RLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLT 120
L +L +L ++ + +L ++ S + QI + L
Sbjct: 446 GLTSLNTL----KMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQ 500
Query: 121 HLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154
L++++ L +L L L N
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 19/160 (11%)
Query: 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC------TR 56
LSF + LRHL+ + L + L
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA----NFMGLEELQHLDFQHSTLKRVTEF 417
Query: 57 DILGRLPNLQSLKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQ 114
L L L D+S+ + L L++LK+ N +
Sbjct: 418 SAFLSLEKLLYL----DISYTNTKIDFDGIFLGLTSLNTLKM--AGNSF-KDNTLSNVFA 470
Query: 115 FPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154
+LT L L+ +L+ + L L +L + N+
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-06
Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 16/175 (9%)
Query: 15 KMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCT---------RDILGRLPNL 65
+ +R+L L E + + L +L + L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253
Query: 66 QSLKI----FEDLSHYQSVLSKSLCELRCLDSLKL-VNESNMLGILQIDIAEYQFPQSLT 120
++ L + S + EL ++++ + + Y + +
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 121 HLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLA--CCSGGFPCLKFLHL 173
+++ N+K+ P + L L L L +N L C G +P L+ L L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 20/154 (12%)
Query: 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNF--ISALHLSSCTRDILG 60
L + T E + + L L+ H P C E + F +S+ + I
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP- 430
Query: 61 RLPNLQSLKIFEDLSHYQ-SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSL 119
L+ L D+S+ S L L+ L + N L L + L
Sbjct: 431 --QTLEVL----DVSNNNLDSFSLFLPRLQ---ELYI--SRNKLKTLP----DASLFPVL 475
Query: 120 THLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153
+ ++ +LK P ++L L + L N +
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 24/159 (15%)
Query: 6 IDHTPEDIWK-MHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS-------SCTRD 57
+ P + + L L+ + K + + L LS T +
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381
Query: 58 ILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVN-ESNMLGILQIDIAEYQFP 116
IL L NL SL D+S + + ++ +N S + +++ I P
Sbjct: 382 ILLTLKNLTSL----DISRNT--FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-----P 430
Query: 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155
Q+L L ++N L + LP L L + +N
Sbjct: 431 QTLEVLDVSNNNLDSFSLF----LPRLQELYISRNKLKT 465
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 6e-06
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 24/182 (13%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----TRDILGRLPN 64
+ KM KL L+ + K+ A ++ L L D
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRH-----LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620
Query: 65 LQSLKIFEDLSH---YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQS 118
++ L SH + + + S+ N +G +I + +
Sbjct: 621 VEGL----GFSHNKLKYIPNIFNAKSVYVMGSVDF--SYNKIGSEGRNISCSMDDYKGIN 674
Query: 119 LTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLW 178
+ ++L+ +++ P + + L N + + S + + +
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTT 732
Query: 179 LD 180
+D
Sbjct: 733 ID 734
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-05
Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 7/146 (4%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAHP---GKYCSALENLNFISALHLSSCTRDILGRLPNLQ 66
P+ I ++ +L+ L+FG G + + L L
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 67 SLKIFED-LSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLT 125
+ +D ++ + L ++ N +N + + I L +
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL---TKLQIIYFA 456
Query: 126 NTKLKDDPMPTLEKLPHLLVLKLKQN 151
N+ D + + + K +N
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYEN 482
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 26/169 (15%)
Query: 14 WKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----TRDILGRLPNLQSL 68
+ + L+ LN Y L S L ++ + L L LQ+L
Sbjct: 311 YGLDNLQVLNLSYNLLGELYS---SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367
Query: 69 KIFEDLSHYQSVLSKSLCELRCLDSLKLVNES-NMLGILQIDIAEYQFPQSLTHLSLTNT 127
DL L + + S+ + S N L L + + + L+
Sbjct: 368 ----DLRDNA------LTTIHFIPSIPDIFLSGNKLVTLP------KINLTANLIHLSEN 411
Query: 128 KLKD-DPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175
+L++ D + L ++PHL +L L QN FS P L+ L L
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 33/143 (23%), Positives = 48/143 (33%), Gaps = 14/143 (9%)
Query: 41 ENLNFISALHLSSC-----TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLK 95
+ LN L LS T L LQ L +L + L+ R L +L+
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLL----ELGSQYTPLTIDKEAFRNLPNLR 76
Query: 96 LVN-ESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMP--TLEKLPHLLVLKLKQNS 152
+++ S+ I + +Q L L L L D + L L L L +N
Sbjct: 77 ILDLGSS--KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 153 FSRRKLACCSGGFPCLKFLHLKS 175
L G LK + S
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSS 157
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 42/177 (23%), Positives = 65/177 (36%), Gaps = 24/177 (13%)
Query: 10 PEDIWKMHKLRHLNFGY--IKLHAHPGKYCSALENLNFISALHLS-------SCTRDILG 60
L HL+ +L G LENL + L LS C L
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTG----CLENLENLRELDLSHDDIETSDCCNLQLR 373
Query: 61 RLPNLQSLKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQS 118
L +LQSL +LS+ S+ +++ E L+ L L L + +Q
Sbjct: 374 NLSHLQSL----NLSYNEPLSLKTEAFKECPQLELLDL--AFTRLKVKDAQSP-FQNLHL 426
Query: 119 LTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCS--GGFPCLKFLHL 173
L L+L+++ L + LP L L L+ N F + + + L+ L L
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 15/176 (8%)
Query: 5 FIDHTPEDIWKMHKLRHLNFGYIK-----LHAHPGKYCSALENLNFISALHLSSCTRDIL 59
I + + LNFG + +L F + + +
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF-EDMDDEDISPAVF 248
Query: 60 GRLPNLQSLKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQ 117
L + I +L + ++ S + L L L L L +
Sbjct: 249 EGLCEMSVESI--NLQKHYFFNISSNTFHCFSGLQELDLTA--THLSELPSGLVGLS--- 301
Query: 118 SLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHL 173
+L L L+ K ++ + P L L +K N+ C L+ L L
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 22/210 (10%)
Query: 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----TRDILG 60
+ + + +L HL+F + L S +L + L +S I
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 61 RLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLT 120
L +L+ LK+ S ++ L ELR L L L L L SL
Sbjct: 148 GLSSLEVLKM-AGNSFQENFLPDIFTELRNLTFLDL--SQCQLEQLSPTAFNSL--SSLQ 202
Query: 121 HLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLK------ 174
L++++ + L L VL N K L FL+L
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262
Query: 175 --SMLWLDEWTMGTKATWKLEHLIINPCAS 202
+W + + CA+
Sbjct: 263 TCEHQSFLQWIKDQRQLLVEVERME--CAT 290
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 18/154 (11%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQSLK 69
+ + ++ KLR G A EN + L +L +
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED---LKWDNLKDLTDV- 254
Query: 70 IFEDLSHYQ--SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFP------QSLTH 121
++ + + L L L + + + N + ++Q + +
Sbjct: 255 ---EVYNCPNLTKLPTFLKALPEMQLINV--ACNRGISGEQLKDDWQALADAPVGEKIQI 309
Query: 122 LSLTNTKLKDDPMPT-LEKLPHLLVLKLKQNSFS 154
+ + LK P+ T L+K+ L +L+ N
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 13/178 (7%)
Query: 10 PEDIWKMHKLRHLNFGYIKLHAHP---GKYCSALENLNFISALHLSSCTRDILGRLPNLQ 66
+ KM KL L Y +L G L +LN ++ ++ + G ++
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGS-EIKLASLN-LAYNQITEIPANFCGFTEQVE 380
Query: 67 SLKIFE-DLSHYQSVLSKSLCELRCLDSLKLVN---ESNMLGILQIDIAEYQFPQSLTHL 122
+L L + ++ + + ++ S +++ +
Sbjct: 381 NLSFAHNKLKYIPNIFD--AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 123 SLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLD 180
+L+N ++ P L + L N + ++ S F + + +D
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSID 494
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 16 MHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCT-----RDILGRLPNLQSLKI 70
++ L+ L G L A LN + L L C + L L L L
Sbjct: 127 LYNLKSLEVGDNDLVYIS---HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL-- 181
Query: 71 FEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTK 128
L H ++ S L L L++ + L + + + +LT LS+T+
Sbjct: 182 --RLRHLNINAIRDYSFKRLYRLKVLEI-SHWPYLDTMTPNC---LYGLNLTSLSITHCN 235
Query: 129 LKDDPMPTLEKLPHLLVLKLKQNSFSR 155
L P + L +L L L N S
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPIST 262
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 7e-04
Identities = 29/165 (17%), Positives = 47/165 (28%), Gaps = 22/165 (13%)
Query: 12 DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRLPNLQSLKIF 71
DI K L+ L ++ + + ++ + L L + P L+
Sbjct: 63 DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE----- 117
Query: 72 EDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKD 131
L+ L L N S + + L LS+ +
Sbjct: 118 --------------ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163
Query: 132 DPMPTLEKLPHLLVLKLKQNSFSRRK---LACCSGGFPCLKFLHL 173
+ P L L L N + A C FP L+ L L
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 202 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.82 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.81 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.81 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.8 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.79 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.79 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.78 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.78 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.77 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.77 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.77 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.77 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.76 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.76 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.75 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.75 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.75 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.75 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.75 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.74 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.74 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.74 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.73 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.73 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.73 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.73 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.73 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.73 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.73 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.73 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.72 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.72 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.72 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.72 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.72 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.71 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.71 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.7 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.7 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.7 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.7 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.7 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.7 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.7 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.69 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.69 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.68 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.67 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.66 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.66 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.66 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.65 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.65 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.65 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.65 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.64 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.64 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.64 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.64 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.64 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.63 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.63 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.63 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.63 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.63 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.63 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.63 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.63 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.62 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.62 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.62 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.62 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.62 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.61 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.6 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.6 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.6 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.59 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.59 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.58 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.56 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.55 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.55 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.55 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.54 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.53 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.53 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.52 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.51 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.51 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.5 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.49 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.47 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.46 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.46 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.45 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.45 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.44 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.43 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.43 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.42 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.38 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.38 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.38 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.37 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.37 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.36 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.36 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.35 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.35 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.34 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.3 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.3 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.29 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.28 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.28 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.25 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.2 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.2 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.18 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.15 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.15 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.14 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.14 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.11 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.09 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.09 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.06 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.06 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.02 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.89 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.89 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.79 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.76 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.76 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.68 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.63 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.6 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.58 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.52 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.48 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.45 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.41 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.34 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.3 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.96 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.88 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.82 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.7 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.65 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.11 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 95.63 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 95.49 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 95.23 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.13 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 95.06 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 94.77 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 92.52 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 90.42 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 88.84 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=159.26 Aligned_cols=187 Identities=21% Similarity=0.221 Sum_probs=149.6
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+++.++.+|..+.++++|++|++++ |....+|..++.+++|++|+....... |.. ++++++|++|++++|. ..+
T Consensus 89 ~~n~l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~--~~~ 164 (328)
T 4fcg_A 89 RSVPLPQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACP--ELT 164 (328)
T ss_dssp ESSCCSSCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEET--TCC
T ss_pred cCCCchhcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCC--Ccc
Confidence 4678889999999999999999999 444488988999999999986665544 667 9999999999999987 666
Q ss_pred HHHHHhcc---------CCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEe
Q 037964 80 VLSKSLCE---------LRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKL 148 (202)
Q Consensus 80 ~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 148 (202)
.+|..++. +++|+.|+++++. +. .+ ++.. +++|+.|++++|++...+ ..++.+++|++|++
T Consensus 165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-----l~-~lp~~l~~-l~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTG-----IR-SLPASIAN-LQNLKSLKIRNSPLSALG-PAIHHLPKLEELDL 236 (328)
T ss_dssp CCCSCSEEEC-CCCEEESTTCCEEEEEEEC-----CC-CCCGGGGG-CTTCCEEEEESSCCCCCC-GGGGGCTTCCEEEC
T ss_pred ccChhHhhccchhhhccCCCCCEEECcCCC-----cC-cchHhhcC-CCCCCEEEccCCCCCcCc-hhhccCCCCCEEEC
Confidence 67766654 8999999998642 11 22 4666 889999999999988754 56888999999999
Q ss_pred ccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 149 KQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++|.+.+.. +...+.+++|+.|++++|...+.++...+.+++|++|++++|+
T Consensus 237 s~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 237 RGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred cCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 987776543 5566778999999999988777777777788999999999875
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-21 Score=151.95 Aligned_cols=186 Identities=20% Similarity=0.104 Sum_probs=153.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccC--ch-hHHHcC---------cCCccceee
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS--SC-TRDILG---------RLPNLQSLK 69 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~--~~-~~~~l~---------~l~~L~~L~ 69 (202)
.++.++.+|.+++++++|++|++++ |....+|..++.+++|++|+...+. +. +.. ++ .+++|++|+
T Consensus 112 ~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 112 DAAGLMELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLR 189 (328)
T ss_dssp ESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEE
T ss_pred CCCCccchhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCCEEECCCCCCccccChh-HhhccchhhhccCCCCCEEE
Confidence 4678889999999999999999999 5544889899999999999865533 22 444 44 499999999
Q ss_pred EEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEe
Q 037964 70 IFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKL 148 (202)
Q Consensus 70 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 148 (202)
+++|. .. .+|..++++++|+.|+++++. +.+.. .+.. +++|+.|++++|.+.+..+..++++++|++|++
T Consensus 190 L~~n~--l~-~lp~~l~~l~~L~~L~L~~N~-----l~~l~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 190 LEWTG--IR-SLPASIANLQNLKSLKIRNSP-----LSALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp EEEEC--CC-CCCGGGGGCTTCCEEEEESSC-----CCCCCGGGGG-CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CcCCC--cC-cchHhhcCCCCCCEEEccCCC-----CCcCchhhcc-CCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 99997 33 788899999999999998743 12111 4667 899999999999998888889999999999999
Q ss_pred ccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 149 KQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
++|...+.. +...+.+++|+.|++++|...+.+|...+.+++|+.+.+..
T Consensus 261 ~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 261 KDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 987776543 55567799999999999998888888888899999887753
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-21 Score=149.69 Aligned_cols=192 Identities=16% Similarity=0.110 Sum_probs=130.5
Q ss_pred CCccc---cccHHHhccccccEEEeCc-eeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecC
Q 037964 3 LSFID---HTPEDIWKMHKLRHLNFGY-IKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 3 ~~~~~---~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~ 75 (202)
++.++ .+|.++.++++|++|++++ |+....+|..++.+++|++|+...... . +.. ++++++|++|++++|.
T Consensus 59 ~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~- 136 (313)
T 1ogq_A 59 GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNA- 136 (313)
T ss_dssp CCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSE-
T ss_pred CCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCc-
Confidence 44554 5788888888888888884 456667777788888888887555443 2 555 7788888888888776
Q ss_pred chHHHHHHHhccCCCccEEEeecCc---chhh-c----------------hhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNES---NMLG-I----------------LQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~-~----------------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
..+.+|..++.+++|++|+++++. .... + +.+.+ .+.. +. |+.|++++|.+.+..
T Consensus 137 -l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 137 -LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp -EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECCSSEEEECC
T ss_pred -cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECcCCcccCcC
Confidence 555677777777888888777632 0000 0 11111 3344 43 777777777777666
Q ss_pred CccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 134 MPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 134 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+..++.+++|+.|++++|.+.+.. + ....+++|++|++++|.....++.....+++|++|++++|.
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred CHHHhcCCCCCEEECCCCceeeec-C-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 677778888888888877775432 2 24567889999998888333556566778889999988763
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-20 Score=146.78 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=141.3
Q ss_pred Cccc-cccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCchHH
Q 037964 4 SFID-HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 4 ~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.+. .+|.+++++++|++|++++|.....+|..++.+++|++|+...... . +.. ++++++|++|++++|. ..+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~--l~~ 163 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR--ISG 163 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC--CEE
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCc--ccC
Confidence 3444 5788888888888888888555667887888888888887555432 2 556 8888888888888886 555
Q ss_pred HHHHHhccCC-CccEEEeecCc------chhh------c------hhccc--ccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 80 VLSKSLCELR-CLDSLKLVNES------NMLG------I------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 80 ~~~~~l~~l~-~L~~L~l~~~~------~~~~------~------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
.+|..++.++ +|+.|+++++. ..+. + +.+.. .+.. +++|+.|++++|.+.... ..+.
T Consensus 164 ~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~-~~~~ 241 (313)
T 1ogq_A 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDL-GKVG 241 (313)
T ss_dssp ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEECCBG-GGCC
T ss_pred cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhc-CCCCCEEECCCCceeeec-Cccc
Confidence 6777888876 88888887631 1111 0 12222 4667 899999999999998764 3478
Q ss_pred CCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 139 KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+++|++|++++|.+.+.. +.....+++|+.|++++|...+.+|.. +.+++|+.+++.+++
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCCCCEEECcCCcccCcC-ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 8999999999988886543 555667999999999999833355544 779999999998875
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-20 Score=142.67 Aligned_cols=189 Identities=20% Similarity=0.097 Sum_probs=125.7
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccC-ch---hHHHcCcCCccceeeEEeecCc
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS-SC---TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~---~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
.++.++.+|. .+.++++|++|++++|......|..++.+++|++|+..... .. +.. +..+++|++|++++|.
T Consensus 40 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n~-- 116 (285)
T 1ozn_A 40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCG-- 116 (285)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSC--
T ss_pred eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCCc--
Confidence 4566666664 46777777777777743444445567777777777755443 22 344 7777777777777776
Q ss_pred hHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 77 YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
..+..+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|++|++++|.+.
T Consensus 117 l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 117 LQELGPGLFRGLAALQYLYLQDNA-----LQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCEECHhHhhCCcCCCEEECCCCc-----ccccCHhHhcc-CCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 444445667777778877776532 01100 3556 778888888888888776667788888888888877765
Q ss_pred CceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 155 RRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
+.. +.....+++|+.|++++|. +..++.. ...+++|++|++++++
T Consensus 191 ~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 191 HVH-PHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEC-TTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccC-HhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 422 3345567888888888887 5555432 4567888888888765
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-20 Score=157.92 Aligned_cols=194 Identities=20% Similarity=0.212 Sum_probs=134.8
Q ss_pred CCccc-cccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCchH
Q 037964 3 LSFID-HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 3 ~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
++.+. .+|.++..+++|++|++++|...+.+|..++.+++|+.|+..++.. . |.+ ++++++|++|++++|+ ..
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~--l~ 527 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS--FS 527 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC--CE
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCc--cc
Confidence 33444 4556666666666666666444555666666666666666444432 2 555 7777777777777776 55
Q ss_pred HHHHHHhccCCCccEEEeecCc---chhh-c-------------------------------------------------
Q 037964 79 SVLSKSLCELRCLDSLKLVNES---NMLG-I------------------------------------------------- 105 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~---~~~~-~------------------------------------------------- 105 (202)
+.+|..++.+++|+.|+++++. .... +
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 6677777777777777776531 0000 0
Q ss_pred ------------hhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEE
Q 037964 106 ------------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171 (202)
Q Consensus 106 ------------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 171 (202)
+.|.+ .+.. +++|+.|++++|++.+..+..++++++|+.|++++|.+.+.. |...+.+++|+.|
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~-l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~L~~L~~L 685 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNIL 685 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSS-SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEE
T ss_pred ccccccccccceecccCchhhhc-cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-ChHHhCCCCCCEE
Confidence 00111 2334 577899999999999888899999999999999999988765 6667789999999
Q ss_pred EeccccCccceeeCCCccccccEEeeecCC
Q 037964 172 HLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 172 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++++|.....+|.....++.|++|++++|+
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999998555777777888999999999873
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=136.11 Aligned_cols=188 Identities=23% Similarity=0.206 Sum_probs=137.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
++++++.+|..+. +++++|++++|......+..++.+++|++|+....... +..++.++++|++|++++|. ...
T Consensus 24 ~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l~~ 99 (270)
T 2o6q_A 24 SSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK--LQA 99 (270)
T ss_dssp TTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC--CCC
T ss_pred cCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc--CCc
Confidence 4567888887554 68999999994444444446888999999886555433 44437889999999999987 444
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
..+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...+...++.+++|++|++++|.+....
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQ-----LKSLPPRVFDS-LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCHhHcccccCCCEEECCCCc-----cCeeCHHHhCc-CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 444567888999999998632 01111 3566 889999999999999887777889999999999988775421
Q ss_pred EEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 158 LACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
+.....+++|+.|++++|. +..++.. ...+++|+.|++.++|
T Consensus 174 -~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 174 -EGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 2224568899999999987 6666543 3567889999998765
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=140.25 Aligned_cols=189 Identities=18% Similarity=0.149 Sum_probs=120.5
Q ss_pred CCCccccccHH-HhccccccEEEeCce-------------------------eeccccccccccCCCcceecccccCch-
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYI-------------------------KLHAHPGKYCSALENLNFISALHLSSC- 54 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~-------------------------~~~~~~p~~l~~l~~L~~L~~~~~~~~- 54 (202)
.++.++++|.. +.++++|++|++++| +....+|..+..+++|++|+.......
T Consensus 36 ~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~ 115 (306)
T 2z66_A 36 ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115 (306)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES
T ss_pred CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccc
Confidence 34555555543 455556666666553 222233444455555555543332221
Q ss_pred -h--HHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcc-c--ccccCCCCccEEEeeCCC
Q 037964 55 -T--RDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQID-I--AEYQFPQSLTHLSLTNTK 128 (202)
Q Consensus 55 -~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~--~~~~~l~~L~~L~l~~~~ 128 (202)
+ .. +..+++|++|++++|. .....+..+..+++|+.|+++++. +.+. + .+.. +++|+.|++++|+
T Consensus 116 ~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~-l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 116 MSEFSV-FLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNS-----FQENFLPDIFTE-LRNLTFLDLSQCQ 186 (306)
T ss_dssp STTTTT-TTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCE-----EGGGEECSCCTT-CTTCCEEECTTSC
T ss_pred cccchh-hhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCc-----cccccchhHHhh-CcCCCEEECCCCC
Confidence 1 23 6666666666666665 444455556666777777766532 1221 1 4666 8899999999999
Q ss_pred CCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccc-eeeCCCccc-cccEEeeecCC
Q 037964 129 LKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDE-WTMGTKATW-KLEHLIINPCA 201 (202)
Q Consensus 129 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~-~L~~L~i~~c~ 201 (202)
+...++..+..+++|++|++++|.+.+.. +.....+++|+.|++++|. +.. .+.....+| +|++|++++++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 98887788899999999999988876532 2245678999999999998 543 344445664 89999998875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-19 Score=143.02 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|. ++..+++|++|++++|......|..++.+++|++|+....... +.++++++++|++|++++|. ..
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~ 154 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LE 154 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc--cC
Confidence 3444555443 4555555555555553323333334555555555554333322 33324556666666666654 33
Q ss_pred HHHHHHhccCCCccEEEeec
Q 037964 79 SVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~ 98 (202)
...+..++.+++|+.|++++
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCS
T ss_pred ccChhhccCCCCCCEEECCC
Confidence 33344556666666666655
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=151.00 Aligned_cols=193 Identities=16% Similarity=0.197 Sum_probs=97.2
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|+ ++..+++|++|++++|......|..++.+++|++|+...+... +..+++++++|++|++++|. ..
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~--l~ 160 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LE 160 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc--CC
Confidence 3445555543 4555666666666653333333334555666666654433322 33324666666666666665 44
Q ss_pred HHHHHHhccCCCccEEEeecCc-c-----hhh-c----hh----------------------------------------
Q 037964 79 SVLSKSLCELRCLDSLKLVNES-N-----MLG-I----LQ---------------------------------------- 107 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~-~-----~~~-~----~~---------------------------------------- 107 (202)
+..+..++.+++|+.|+++++. . .+. + +.
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 4444556666666666665521 0 000 0 00
Q ss_pred c-cc----ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce
Q 037964 108 I-DI----AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW 182 (202)
Q Consensus 108 ~-~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 182 (202)
+ .+ ++.. +++|+.|++++|.+.+.++..++++++|+.|++++|.+.+ ++.....+++|+.|++++|. +..+
T Consensus 241 ~n~l~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i 316 (597)
T 3oja_B 241 HNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHV 316 (597)
T ss_dssp SSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSC-CCCC
T ss_pred CCCCCCChhhcc-CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCC-CCcc
Confidence 0 00 2333 4555666666665555555555666666666666555543 23333446666666666665 4444
Q ss_pred eeCCCccccccEEeeecC
Q 037964 183 TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 183 ~~~~~~~~~L~~L~i~~c 200 (202)
+.....+++|+.|++++|
T Consensus 317 ~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp GGGHHHHTTCSEEECCSS
T ss_pred CcccccCCCCCEEECCCC
Confidence 433344455555555444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=136.92 Aligned_cols=191 Identities=17% Similarity=0.162 Sum_probs=102.7
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch-----------------------hH
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----------------------TR 56 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-----------------------~~ 56 (202)
+.++.++.+|. ++.++++|++|++++|......|..++.+++|++|+....... +.
T Consensus 59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~ 138 (330)
T 1xku_A 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 138 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCH
T ss_pred CCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCH
Confidence 35677777765 5778888888888884445455666777777777764332211 22
Q ss_pred HHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcc
Q 037964 57 DILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPT 136 (202)
Q Consensus 57 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 136 (202)
++++++++|+.|++++|.....+..+..+..+++|+.|+++++.- . .+.... .++|+.|++++|.+...++..
T Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-----~-~l~~~~-~~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-----T-TIPQGL-PPSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-----C-SCCSSC-CTTCSEEECTTSCCCEECTGG
T ss_pred hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-----c-cCCccc-cccCCEEECCCCcCCccCHHH
Confidence 225666666666666665222234445566666666666654210 0 001111 345555555555555544555
Q ss_pred ccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 137 LEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
+.++++|++|++++|.+.+.. +.....+++|+.|++++|. +..++.....+++|++|++++|
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence 555666666666555543211 1122335556666666554 4444444444555555555544
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-19 Score=153.92 Aligned_cols=190 Identities=19% Similarity=0.167 Sum_probs=123.4
Q ss_pred CCCccc-cccHH-HhccccccEEEeCceeeccccccccccCC-CcceecccccCc-------------------------
Q 037964 2 PLSFID-HTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALE-NLNFISALHLSS------------------------- 53 (202)
Q Consensus 2 ~~~~~~-~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~~~~~~~------------------------- 53 (202)
.++.+. .+|.. +.++++|++|++++|...+.+|..+..++ +|++|+......
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 445554 67765 77777777777777555556666666555 555555332211
Q ss_pred ---h-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCC
Q 037964 54 ---C-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNT 127 (202)
Q Consensus 54 ---~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~ 127 (202)
. +.. ++++++|+.|++++|. ..+.+|..++.+++|+.|+++++. +.+.+ .+.. +++|+.|++++|
T Consensus 406 l~~~~p~~-l~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~~~~-l~~L~~L~L~~N 476 (768)
T 3rgz_A 406 FTGKIPPT-LSNCSELVSLHLSFNY--LSGTIPSSLGSLSKLRDLKLWLNM-----LEGEIPQELMY-VKTLETLILDFN 476 (768)
T ss_dssp EEEECCGG-GGGCTTCCEEECCSSE--EESCCCGGGGGCTTCCEEECCSSC-----CCSCCCGGGGG-CTTCCEEECCSS
T ss_pred cccccCHH-HhcCCCCCEEECcCCc--ccCcccHHHhcCCCCCEEECCCCc-----ccCcCCHHHcC-CCCceEEEecCC
Confidence 1 333 5555555555555554 444555555555666666555432 12222 4556 788888888888
Q ss_pred CCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 128 KLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 128 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++.+..+..++++++|++|++++|.+.+.. +...+.+++|+.|++++|.....++...+.+++|+.|++++|+
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcC-ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 888777778888888888888877776543 5556678888888888888444666666778888888888763
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-19 Score=144.17 Aligned_cols=169 Identities=21% Similarity=0.184 Sum_probs=104.1
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.+++++.++ .++.++++|++|++++|......|..++++++|++|+....... +..+++++++|++|++++|. .
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i 116 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK--I 116 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC--C
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc--c
Confidence 3566677764 46777888888888874445555666777778887775544333 33336777888888887776 5
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
....+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|+.|++++|.+.+
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDND-----LVYISHRAFSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCTT-----CCEECTTSSTT-CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred ccCChhHccccccCCEEECCCCc-----cceeChhhccC-CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 55556667777788888776532 01000 3455 6677777777777776665566677777777776655532
Q ss_pred ceEEEcCCCCCcccEEEeccccC
Q 037964 156 RKLACCSGGFPCLKFLHLKSMLW 178 (202)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~ 178 (202)
.. +.....+++|+.|++++|..
T Consensus 191 ~~-~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 191 IR-DYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EC-TTCSCSCTTCCEEEEECCTT
T ss_pred eC-hhhcccCcccceeeCCCCcc
Confidence 11 11233455555555555443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-19 Score=148.71 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=153.0
Q ss_pred CCCccccc---cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---h-HHHcCcCCccceeeEEeec
Q 037964 2 PLSFIDHT---PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---T-RDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 2 ~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~-~~~l~~l~~L~~L~l~~~~ 74 (202)
.++.++.+ |..+..+++|++|++++ |....+|..++.+++|++|+....... + .. ++++++|+.|++++|.
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSF-NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA-FLSLEKLLYLDISYTN 435 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCS-CSEEEECCCCTTCTTCCEEECTTSEEESTTTTTT-TTTCTTCCEEECTTSC
T ss_pred cCCccCCCcchhhhhccCCcccEeECCC-CccccchhhccCCCCCCeeECCCCccCCccChhh-hhccccCCEEECcCCC
Confidence 45666665 78899999999999999 555557777889999999986555433 3 35 8899999999999998
Q ss_pred CchHHHHHHHhccCCCccEEEeecCcchhhchhcc-c--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccC
Q 037964 75 SHYQSVLSKSLCELRCLDSLKLVNESNMLGILQID-I--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQN 151 (202)
Q Consensus 75 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 151 (202)
..+..|..++.+++|+.|+++++. +.+. + .+.. +++|+.|++++|++.+.++..++++++|++|++++|
T Consensus 436 --l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 436 --TKIDFDGIFLGLTSLNTLKMAGNS-----FKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp --CEECCTTTTTTCTTCCEEECTTCE-----EGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --CCccchhhhcCCCCCCEEECCCCc-----CCCcchHHhhcc-CCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 667778889999999999998753 2222 2 4677 899999999999999888888999999999999988
Q ss_pred ccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccc-cccEEeeecCC
Q 037964 152 SFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATW-KLEHLIINPCA 201 (202)
Q Consensus 152 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~i~~c~ 201 (202)
.+.+.. +.....+++|+.|++++|. +..++.....++ +|++|+++++|
T Consensus 508 ~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 508 NLLFLD-SSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CCSCEE-GGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred cCCCcC-HHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 886532 4566789999999999998 888887777787 59999999875
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=141.79 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=124.6
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.++.++.++ .++.++++|++|++++|......+..+.++++|++|+..+.... +.+++..+++|++|++++|. .
T Consensus 71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--i 148 (440)
T 3zyj_A 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP--I 148 (440)
T ss_dssp CCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC--C
T ss_pred ccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc--c
Confidence 3567777775 56788888888888884444444456777888888875554433 33337788888888888776 3
Q ss_pred HHHHHHHhccCCCccEEEeecCcch-------hh-c-------hh-ccc----ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNM-------LG-I-------LQ-IDI----AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~-------~~-~-------~~-~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
....+..+.++++|+.|+++++... +. + ++ +.+ .+.. +++|+.|++++|++...++..+
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP-LIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTT-CSSCCEEECTTSCCCEECTTTT
T ss_pred cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCC-CcccCEEECCCCccCccChhhh
Confidence 3333446667777777777652110 00 0 01 111 2344 5677777777777776666677
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
.++++|+.|++++|.+.+.. +.....+++|+.|++++|. +..++.. ...+++|+.|+++++|
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 77777777777766654321 2234567888888888887 6655543 2557888888888765
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=134.77 Aligned_cols=186 Identities=19% Similarity=0.101 Sum_probs=143.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.++.++.+|..+. +++++|++++|......+..+..+++|+.|+....... ... .+.+++|+.|++++|. ...
T Consensus 18 ~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~---l~~ 91 (290)
T 1p9a_G 18 DKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ---LQS 91 (290)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC---CSS
T ss_pred CCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCc---CCc
Confidence 4677888887664 68999999995555555667888999999886665544 444 5788999999999996 446
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
+|..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..+..+++|+.|++++|.+..-.
T Consensus 92 l~~~~~~l~~L~~L~l~~N~-----l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~- 164 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNR-----LTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP- 164 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSC-----CCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-
T ss_pred CchhhccCCCCCEEECCCCc-----CcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-
Confidence 77788889999999998642 11110 3566 889999999999999888888889999999999988876311
Q ss_pred EEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 159 ACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+.....+++|+.|++++|. +..++......+.|+.+++.++|
T Consensus 165 ~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred HHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 1223568999999999998 77777777777889999998765
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=131.81 Aligned_cols=187 Identities=18% Similarity=0.110 Sum_probs=143.6
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|.++ .++|++|++++|......+..++.+++|++|+....... +.. ++++++|++|++++|. ..
T Consensus 19 ~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--~l 93 (285)
T 1ozn_A 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNA--QL 93 (285)
T ss_dssp CSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCT--TC
T ss_pred CcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCC--Cc
Confidence 456788888754 579999999995445444456899999999986655433 555 9999999999999984 23
Q ss_pred HHH-HHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 79 SVL-SKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 79 ~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
..+ +..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...+...++++++|++|++++|.+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCG-----LQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred cccCHHHhcCCcCCCEEECCCCc-----CCEECHhHhhC-CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 334 6788999999999998642 11111 3666 8999999999999998888889999999999999887753
Q ss_pred ceEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecCC
Q 037964 156 RKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~ 201 (202)
.. +.....+++|+.|++++|. +..+ +.....+++|++|++++|.
T Consensus 168 ~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 168 VP-ERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred cC-HHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc
Confidence 11 1235678999999999998 6555 4445678999999999874
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=141.10 Aligned_cols=196 Identities=16% Similarity=0.134 Sum_probs=130.6
Q ss_pred CCCCccccc-cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHT-PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
++++.++.+ |.++.++++|++|++++|......+..+..+++|++|+..+.... +.++++.+++|++|++++|. .
T Consensus 82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--l 159 (452)
T 3zyi_A 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP--I 159 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC--C
T ss_pred CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC--c
Confidence 456778887 456889999999999995445555566888888888886555433 43338888899999998886 4
Q ss_pred HHHHHHHhccCCCccEEEeecCcch-------hh----c----hh-ccc----ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNM-------LG----I----LQ-IDI----AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~-------~~----~----~~-~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
....+..+.++++|+.|+++++... +. + ++ +.+ .+.. +++|+.|++++|.+...++..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTT-CTTCCEEECTTSCCSEECGGGG
T ss_pred ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccc-cccccEEECcCCcCcccCcccc
Confidence 4433446777788888887652110 00 0 01 111 2344 5677777777777777666777
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
.++++|+.|++++|.+.+.. +.....+++|+.|++++|. +..++.. ...+++|++|++.++|
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 77778888888766664321 2234567888888888886 6655443 2557888888888765
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=137.18 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=73.8
Q ss_pred CCCccccccHH-HhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|.. +.++++|++|++++|......+..++.+++|++|+....... ++++++++++|++|++++|. ..
T Consensus 53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~ 130 (390)
T 3o6n_A 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--LS 130 (390)
T ss_dssp ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc--cC
Confidence 45678889876 689999999999994444444557899999999986655433 33338999999999999996 33
Q ss_pred HHHHHH-hccCCCccEEEeecC
Q 037964 79 SVLSKS-LCELRCLDSLKLVNE 99 (202)
Q Consensus 79 ~~~~~~-l~~l~~L~~L~l~~~ 99 (202)
.+|.. ++++++|+.|+++++
T Consensus 131 -~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 131 -SLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp -CCCTTTTTTCTTCCEEECCSS
T ss_pred -cCCHHHhcCCCCCcEEECCCC
Confidence 45544 689999999999874
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=132.51 Aligned_cols=179 Identities=17% Similarity=0.133 Sum_probs=130.8
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.++.++.+| ++..+++|++|++++ +....++. ++.+++|++|+....... ++. ++++++|++|++++|. ..+
T Consensus 48 l~~~~i~~l~-~~~~l~~L~~L~L~~-n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~ 121 (308)
T 1h6u_A 48 AFGTGVTTIE-GVQYLNNLIGLELKD-NQITDLAP-LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQ--ITD 121 (308)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTTSC--CCC
T ss_pred eeCCCccCch-hhhccCCCCEEEccC-CcCCCChh-HccCCCCCEEEccCCcCCCchh-hcCCCCCCEEECCCCC--CCC
Confidence 3567778887 588889999999998 45445554 788888888876655544 556 8888999999998886 222
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
++ .+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|.+...+. +..+++|+.|++++|.+.+..
T Consensus 122 -~~-~l~~l~~L~~L~l~~n~-----l~-~~~~l~~-l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~- 189 (308)
T 1h6u_A 122 -VT-PLAGLSNLQVLYLDLNQ-----IT-NISPLAG-LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS- 189 (308)
T ss_dssp -CG-GGTTCTTCCEEECCSSC-----CC-CCGGGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-
T ss_pred -ch-hhcCCCCCCEEECCCCc-----cC-cCccccC-CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh-
Confidence 33 37888899999887632 01 11 3556 7889999999998887533 788899999999888775422
Q ss_pred EEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 159 ACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
....+++|+.|++++|. +..++. ...+++|+.|++++++
T Consensus 190 --~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 --PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp --GGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEE
T ss_pred --hhcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCe
Confidence 25668889999999887 655542 4668889999888763
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=144.36 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=132.1
Q ss_pred CCCccccccHH-HhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|.. +.++++|++|++++|......|..++.+++|+.|+....... ++.+++++++|++|++++|. ..
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~ 136 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--LS 136 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC--CC
Confidence 46778889876 688999999999995555555567999999999986665433 43338999999999999997 44
Q ss_pred HHHHH-HhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC----------------------
Q 037964 79 SVLSK-SLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP---------------------- 133 (202)
Q Consensus 79 ~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---------------------- 133 (202)
.+|. .++.+++|+.|+++++.- .+.. .+.. +++|+.|++++|.+...+
T Consensus 137 -~l~~~~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 137 -SLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTFQA-TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCC-----CBCCTTTTTT-CTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred -CCCHHHhccCCCCCEEEeeCCcC-----CCCChhhhhc-CCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 4444 468999999999987420 0000 1222 333333333333322211
Q ss_pred -------------------------------------CccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccc
Q 037964 134 -------------------------------------MPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSM 176 (202)
Q Consensus 134 -------------------------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 176 (202)
+..++.+++|+.|++++|.+.+.. +...+.+++|+.|++++|
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNN 288 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTS
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC-HHHhcCccCCCEEECCCC
Confidence 245667788888888877765432 445567889999999988
Q ss_pred cCccceeeCCCccccccEEeeecCC
Q 037964 177 LWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 177 ~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
. +..++...+.+|+|+.|++++|.
T Consensus 289 ~-l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 289 R-LVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp C-CCEEECSSSCCTTCCEEECCSSC
T ss_pred C-CCCCCcccccCCCCcEEECCCCC
Confidence 7 77777777778999999998874
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=132.60 Aligned_cols=83 Identities=20% Similarity=0.161 Sum_probs=46.3
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcc----eEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC-Cccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLL----VLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-KATW 190 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~ 190 (202)
+++|+.|++++|++...+...+..+++|+ +|++++|.+.+ ++.......+|+.|++++|. +..++... ..++
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 224 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLT 224 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCC
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEECCCCc-eeecCHhHhcccc
Confidence 44555555555554444333333333333 44444444321 11112234479999999888 76665543 5688
Q ss_pred cccEEeeecCC
Q 037964 191 KLEHLIINPCA 201 (202)
Q Consensus 191 ~L~~L~i~~c~ 201 (202)
+|++|++++++
T Consensus 225 ~L~~L~l~~N~ 235 (276)
T 2z62_A 225 SLQKIWLHTNP 235 (276)
T ss_dssp SCCEEECCSSC
T ss_pred cccEEEccCCc
Confidence 99999998654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=139.19 Aligned_cols=189 Identities=20% Similarity=0.173 Sum_probs=130.9
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+..++++|..+. +++++|++++|......|..++++++|+.|+....... +.. +.++++|++|++++|. ...
T Consensus 63 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~--l~~ 137 (452)
T 3zyi_A 63 RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDNW--LTV 137 (452)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC--CSB
T ss_pred CCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCCCc--CCc
Confidence 457788887554 69999999996556666777999999999987665544 455 9999999999999997 454
Q ss_pred HHHHHhccCCCccEEEeecCc------chhh----c----hhc--cc------ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 80 VLSKSLCELRCLDSLKLVNES------NMLG----I----LQI--DI------AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~------~~~~----~----~~~--~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
..+..+..+++|+.|+++++. ..+. + +.+ .+ .+.. +++|+.|++++|++... ..+
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~--~~~ 214 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDM--PNL 214 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSCCSSC--CCC
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCccccc--ccc
Confidence 445568899999999998742 0110 0 111 11 2444 66777777777777654 346
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecCC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~ 201 (202)
..+++|+.|++++|.+.+.. +.....+++|+.|++++|. +..+.. ....+++|++|+++++.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc
Confidence 67777777777776665321 3345567788888888877 554432 33557888888888763
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=137.09 Aligned_cols=190 Identities=14% Similarity=0.119 Sum_probs=111.1
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|. ++.++++|++|++++|......|..++++++|++|+....... +.++++++++|++|++++|. .
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l 136 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP---Y 136 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC---C
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC---C
Confidence 4566677665 5777777777777774334444455777777777765444333 33336777777777777775 2
Q ss_pred HHHHH--HhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccC--------------
Q 037964 79 SVLSK--SLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEK-------------- 139 (202)
Q Consensus 79 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-------------- 139 (202)
..++. .+..+++|+.|+++++... +.+ .+.. +++|+.|++++|.+....+..+++
T Consensus 137 ~~l~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 137 KTLGETSLFSHLTKLQILRVGNMDTF-----TKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSC-----CEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred cccCchhhhccCCCCcEEECCCCccc-----cccCHHHccC-CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 23443 5667777777777653200 000 2333 444555555555444433333333
Q ss_pred ----------CCCcceEEeccCccCCceE------------------------------EEcCCCCCcccEEEeccccCc
Q 037964 140 ----------LPHLLVLKLKQNSFSRRKL------------------------------ACCSGGFPCLKFLHLKSMLWL 179 (202)
Q Consensus 140 ----------l~~L~~L~l~~~~~~~~~~------------------------------~~~~~~~~~L~~L~l~~~~~l 179 (202)
+++|++|++++|.+.+... +.....+++|+.|++++|. +
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l 289 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-L 289 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-C
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-C
Confidence 5555555555555433110 0011346788888888887 6
Q ss_pred cceeeCC-CccccccEEeeecCC
Q 037964 180 DEWTMGT-KATWKLEHLIINPCA 201 (202)
Q Consensus 180 ~~~~~~~-~~~~~L~~L~i~~c~ 201 (202)
..++... +.+++|++|++++++
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHHhcCCCCCEEEeeCCC
Confidence 6666654 668889999998875
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-18 Score=146.10 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=111.6
Q ss_pred CCccccccHHHhccccccEEEeCceeeccc-----------------cccccc--cCCCcceecccccC--ch-hHHHcC
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAH-----------------PGKYCS--ALENLNFISALHLS--SC-TRDILG 60 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-----------------~p~~l~--~l~~L~~L~~~~~~--~~-~~~~l~ 60 (202)
.++++.||.+++++++|++|++++|...+. +|..++ ++++|++|+..... +. |.. ++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-Hh
Confidence 457777999999999999999999555554 899998 99999999876654 33 767 99
Q ss_pred cCCccceeeEEeecCchHH-HHHHHhccC------CCccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCCCC
Q 037964 61 RLPNLQSLKIFEDLSHYQS-VLSKSLCEL------RCLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNTKL 129 (202)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~ 129 (202)
++++|++|++++|+. ..+ .+|..++++ ++|+.|+++++. +. .+ .+.. +++|+.|++++|.+
T Consensus 271 ~l~~L~~L~Ls~n~~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-----l~-~ip~~~~l~~-l~~L~~L~L~~N~l 342 (636)
T 4eco_A 271 ALPEMQLINVACNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYNN-----LK-TFPVETSLQK-MKKLGMLECLYNQL 342 (636)
T ss_dssp TCSSCCEEECTTCTT-SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-----CS-SCCCHHHHTT-CTTCCEEECCSCCC
T ss_pred cCCCCCEEECcCCCC-CccccchHHHHhhhccccCCCCCEEECCCCc-----CC-ccCchhhhcc-CCCCCEEeCcCCcC
Confidence 999999999999841 233 688888876 899999998742 01 11 1344 66677777777766
Q ss_pred CCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCc-ccEEEecccc
Q 037964 130 KDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPC-LKFLHLKSML 177 (202)
Q Consensus 130 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 177 (202)
.+..+ .++.+++|++|++++|.+. .++.....+++ |+.|++++|.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSC
T ss_pred ccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCc
Confidence 63323 5556666666666655543 22222333444 5555555554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=131.97 Aligned_cols=172 Identities=19% Similarity=0.186 Sum_probs=105.1
Q ss_pred hccccccEEEeCceeeccccccccccC-----CCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHH--HHH
Q 037964 14 WKMHKLRHLNFGYIKLHAHPGKYCSAL-----ENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSV--LSK 83 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~~p~~l~~l-----~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~ 83 (202)
..+++|++|++++ |.....|..++.+ ++|++|+..+.... +.. ++++++|++|++++|+ ..+. ++.
T Consensus 118 ~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~ 193 (312)
T 1wwl_A 118 ATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNP--ELGERGLIS 193 (312)
T ss_dssp CCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSCT--TCHHHHHHH
T ss_pred hcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCCC--cCcchHHHH
Confidence 4455555555555 2222224444444 45555554333322 234 6677777777777765 3332 444
Q ss_pred Hh--ccCCCccEEEeecCcchhhchhc--cc---ccccCCCCccEEEeeCCCCCCCC-CccccCCCCcceEEeccCccCC
Q 037964 84 SL--CELRCLDSLKLVNESNMLGILQI--DI---AEYQFPQSLTHLSLTNTKLKDDP-MPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 84 ~l--~~l~~L~~L~l~~~~~~~~~~~~--~~---~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
.+ +.+++|+.|+++++. +.+ .+ .+.. +++|+.|++++|++.+.+ ...+..+++|++|++++|.+..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAG-----METPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HSCTTSCTTCCEEECTTSC-----CCCHHHHHHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred HHHhccCCCCCEEECCCCc-----CcchHHHHHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 54 667777777776532 110 11 2234 688899999988888755 3455677889999998887752
Q ss_pred ceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 156 RKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++... +++|+.|++++|. ++.++. ...+++|++|++++++
T Consensus 268 --ip~~~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 --VPKGL--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp --CCSSC--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred --hhhhc--cCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 23222 3789999999887 766654 5678899999988764
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=137.81 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=127.8
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+..++++|..+. +++++|++++|......+..++++++|+.|+....... +.. +.++++|++|++++|. ...
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~--l~~ 126 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDNR--LTT 126 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECCSSC--CSS
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCCc--CCe
Confidence 467888888665 78999999995555555577999999999986665544 455 9999999999999997 444
Q ss_pred HHHHHhccCCCccEEEeecCc------chhh----c----hhc--cc------ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 80 VLSKSLCELRCLDSLKLVNES------NMLG----I----LQI--DI------AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~------~~~~----~----~~~--~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
..+..+..+++|+.|+++++. ..+. + +.+ .+ .+.. +++|+.|++++|++...+ .+
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~--~~ 203 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLREIP--NL 203 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEEECTTSCCSSCC--CC
T ss_pred eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCeecCCCCcCcccc--cc
Confidence 444578999999999998742 0110 0 111 11 2444 666777777777666542 45
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPC 200 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c 200 (202)
..+++|+.|++++|.+.+.. +.....+++|+.|++++|. +..+.. ....+++|++|+++++
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp TTCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS
T ss_pred CCCcccCEEECCCCccCccC-hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC
Confidence 66777777777766654311 2334567778888888776 554433 2345788888888776
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-18 Score=134.53 Aligned_cols=181 Identities=19% Similarity=0.144 Sum_probs=136.3
Q ss_pred ccHHHh-------ccccccEEEeCceeecccccccc--ccCCCcceecccccCch--hHHHcCcC-----CccceeeEEe
Q 037964 9 TPEDIW-------KMHKLRHLNFGYIKLHAHPGKYC--SALENLNFISALHLSSC--TRDILGRL-----PNLQSLKIFE 72 (202)
Q Consensus 9 lp~~~~-------~l~~L~~L~l~~~~~~~~~p~~l--~~l~~L~~L~~~~~~~~--~~~~l~~l-----~~L~~L~l~~ 72 (202)
+|..+. ++++|++|++++|......|..+ +.+++|++|+..+.... +.. ++.+ ++|++|++++
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEES
T ss_pred cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeC
Confidence 566665 79999999999966677888876 88999999986665433 434 5555 8999999999
Q ss_pred ecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc------ccccCCCCccEEEeeCCCCCCCC---CccccCCCCc
Q 037964 73 DLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI------AEYQFPQSLTHLSLTNTKLKDDP---MPTLEKLPHL 143 (202)
Q Consensus 73 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L 143 (202)
|. ..+..+..++.+++|+.|+++++. +.+.+ .+.. +++|+.|++++|++...+ ...+.++++|
T Consensus 159 N~--l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 159 AH--SLNFSCEQVRVFPALSTLDLSDNP-----ELGERGLISALCPLK-FPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp CS--CCCCCTTTCCCCSSCCEEECCSCT-----TCHHHHHHHHSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred CC--CccchHHHhccCCCCCEEECCCCC-----cCcchHHHHHHHhcc-CCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 97 666666889999999999998753 11111 2367 899999999999988432 2344578999
Q ss_pred ceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 144 LVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++|++++|.+.+.........+++|+.|++++|. ++.++.... ++|++|+++++.
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC
Confidence 9999999988764311233457999999999998 776655433 899999999874
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-18 Score=138.27 Aligned_cols=88 Identities=24% Similarity=0.201 Sum_probs=61.7
Q ss_pred ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC-Ccc
Q 037964 111 AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-KAT 189 (202)
Q Consensus 111 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~ 189 (202)
.+.. +++|+.|++++|.+...++..++++++|++|++++|.+.+.. +.....+++|++|++++|. +..++... ..+
T Consensus 318 ~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 394 (455)
T 3v47_A 318 AFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQ-LKSVPDGIFDRL 394 (455)
T ss_dssp TTTT-CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhcC-cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhccccccccEEECCCCc-cccCCHhHhccC
Confidence 3455 677888888888777766677777888888888777664321 3345567888888888877 66555433 567
Q ss_pred ccccEEeeecCC
Q 037964 190 WKLEHLIINPCA 201 (202)
Q Consensus 190 ~~L~~L~i~~c~ 201 (202)
++|++|++++++
T Consensus 395 ~~L~~L~l~~N~ 406 (455)
T 3v47_A 395 TSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEEccCCC
Confidence 888888888764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-18 Score=134.11 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=56.4
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.++.++.+|+ ++.++++|++|++++|......|..++.+++|++|+....... +.. +. ++|++|++++|. .
T Consensus 61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~--~~L~~L~l~~n~--i 135 (332)
T 2ft3_A 61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-LP--SSLVELRIHDNR--I 135 (332)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS-CC--TTCCEEECCSSC--C
T ss_pred CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc-cc--ccCCEEECCCCc--c
Confidence 35677777754 6888888888888884445555666778888888775443322 333 22 566666666664 3
Q ss_pred HHHHHHHhccCCCccEEEeec
Q 037964 78 QSVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~ 98 (202)
....+..++.+++|+.|++++
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 136 RKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCCCSGGGSSCSSCCEEECCS
T ss_pred CccCHhHhCCCccCCEEECCC
Confidence 322233455666666666654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-18 Score=142.93 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=108.6
Q ss_pred CCCccccccHH-HhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCch
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
.++.++.+|.. +.++++|++|++++ +....+|.+++.+++|++|+....... +.. ++++++|++|++++|. .
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--~ 337 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNT--K 337 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTT-SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCS--S
T ss_pred ecCccCccCHHHhccccCCCEEeccC-CccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCC--c
Confidence 45566666554 77777888888887 455567777777777777775544322 334 6677777777777665 3
Q ss_pred HHHHHH-HhccCCCccEEEeecCcc--------hhh-c------------hhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 78 QSVLSK-SLCELRCLDSLKLVNESN--------MLG-I------------LQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 78 ~~~~~~-~l~~l~~L~~L~l~~~~~--------~~~-~------------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
...++. .++.+++|+.|+++++.- .+. + +.+.. .+.. +++|+.|++++|.+....
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-CTTCSEEECTTCCEECCT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-CccCCeEECCCCcCCCcc
Confidence 323332 355666666666655210 000 0 00000 2344 556666666666555443
Q ss_pred C-ccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce--e--eCCCccccccEEeeecCC
Q 037964 134 M-PTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW--T--MGTKATWKLEHLIINPCA 201 (202)
Q Consensus 134 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~--~~~~~~~~L~~L~i~~c~ 201 (202)
+ ..++.+++|++|++++|.+.+.. +...+.+++|+.|++++|. +... + .....+++|++|++++|.
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred cchhhhCcccCCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc
Confidence 2 23556666666666655554322 2234456777777777776 3321 1 123456777777777763
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-18 Score=127.52 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=126.6
Q ss_pred CCCccccccH-HHhccccccEEEeCceeecccccc-ccccCCCcceecccc-cCch--hHHHcCcCCccceeeEEeecCc
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALH-LSSC--TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~-~~~~--~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
+++.++.+|. ++.++++|++|++++|.....++. .++.+++|++|+..+ .... +..++.++++|++|++++|.
T Consensus 39 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-- 116 (239)
T 2xwt_C 39 IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-- 116 (239)
T ss_dssp ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC--
T ss_pred eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC--
Confidence 4577778776 678888888888888332444444 577888888887654 3333 33337888888888888886
Q ss_pred hHHHHHHHhccCCCcc---EEEeecCcchhhchhccc---ccccCCCCcc-EEEeeCCCCCCCCCccccCCCCcceEEec
Q 037964 77 YQSVLSKSLCELRCLD---SLKLVNESNMLGILQIDI---AEYQFPQSLT-HLSLTNTKLKDDPMPTLEKLPHLLVLKLK 149 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~---~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 149 (202)
. ..+|. ++.+++|+ .|+++++..+ . .+ .+.. +++|+ .|++++|++...+...+.. ++|+.|+++
T Consensus 117 l-~~lp~-~~~l~~L~~L~~L~l~~N~~l----~-~i~~~~~~~-l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 117 L-KMFPD-LTKVYSTDIFFILEITDNPYM----T-SIPVNAFQG-LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp C-CSCCC-CTTCCBCCSEEEEEEESCTTC----C-EECTTTTTT-TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred C-ccccc-cccccccccccEEECCCCcch----h-hcCcccccc-hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 2 23554 77777777 8888764111 1 11 3566 78888 9999998888666555555 789999998
Q ss_pred cCc-cCCceEEEcCCCC-CcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 150 QNS-FSRRKLACCSGGF-PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 150 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+|. +.. ..+.....+ ++|+.|++++|. +..++.. .+++|+.|++.++.
T Consensus 188 ~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTV-IDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCE-ECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCccc-CCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 774 542 111234456 889999999887 6665544 68899999998875
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=141.20 Aligned_cols=197 Identities=18% Similarity=0.190 Sum_probs=128.8
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.++.++++|.++.++++|++|++++|......|..++.+++|++|+...... . +..+++++++|++|++++|. .
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l 362 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD--I 362 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC--C
T ss_pred ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc--c
Confidence 45677888888888888888888888444444455667777777776444321 1 22225566666666666654 2
Q ss_pred HHHH--HHHhccCCCccEEEeecCc------chhh----c---------hhccc---ccccCCCCccEEEeeCCCCCCCC
Q 037964 78 QSVL--SKSLCELRCLDSLKLVNES------NMLG----I---------LQIDI---AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 78 ~~~~--~~~l~~l~~L~~L~l~~~~------~~~~----~---------~~~~~---~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
.+.. +..++.+++|+.|+++++. ..+. + +.+.. ++.. +++|+.|++++|.+...+
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN-LHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT-CTTCCEEECTTCCCBTTC
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC-cccCCEEECCCCccCCcC
Confidence 2211 4445555566666555421 0110 0 11111 3566 889999999999998888
Q ss_pred CccccCCCCcceEEeccCccCCceEE--EcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecCC
Q 037964 134 MPTLEKLPHLLVLKLKQNSFSRRKLA--CCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 134 ~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~ 201 (202)
+..++++++|++|++++|.+.+..++ .....+++|+.|++++|. +..+ +...+.+++|++|++++|.
T Consensus 442 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCCc
Confidence 88899999999999998888664432 234568899999999987 5554 3445678889999888764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-18 Score=148.67 Aligned_cols=184 Identities=17% Similarity=0.120 Sum_probs=120.7
Q ss_pred CccccccHHHhccccccEEEeCceeecc-----------------ccccccc--cCCCcceecccccC--ch-hHHHcCc
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHA-----------------HPGKYCS--ALENLNFISALHLS--SC-TRDILGR 61 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~-----------------~~p~~l~--~l~~L~~L~~~~~~--~~-~~~~l~~ 61 (202)
++++.||.+++++++|++|++++|.+.+ .+|..++ ++++|+.|+...+. +. |.. +++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhC
Confidence 4555577778888888888888854444 2777766 78888887755543 22 656 778
Q ss_pred CCccceeeEEeecCchHH-HHHHHhccCC-------CccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCCCC
Q 037964 62 LPNLQSLKIFEDLSHYQS-VLSKSLCELR-------CLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNTKL 129 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~~-~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~ 129 (202)
+++|+.|++++|+. ..+ .+|..+++++ +|+.|+++++. +. .+ .+.. +++|+.|++++|.+
T Consensus 514 L~~L~~L~Ls~N~~-lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-----L~-~ip~~~~l~~-L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 514 LPELQSLNIACNRG-ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-----LE-EFPASASLQK-MVKLGLLDCVHNKV 585 (876)
T ss_dssp CSSCCEEECTTCTT-SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-----CC-BCCCHHHHTT-CTTCCEEECTTSCC
T ss_pred CCCCCEEECcCCCC-cccccchHHHHhhhhcccccCCccEEEeeCCc-----CC-ccCChhhhhc-CCCCCEEECCCCCc
Confidence 88888888877731 122 5666666554 78888877532 11 11 1455 77788888888877
Q ss_pred CCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCc-ccEEEeccccCccceeeCCCcc--ccccEEeeecCC
Q 037964 130 KDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPC-LKFLHLKSMLWLDEWTMGTKAT--WKLEHLIINPCA 201 (202)
Q Consensus 130 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~--~~L~~L~i~~c~ 201 (202)
...+ .++.+++|+.|++++|.+. .++.....+++ |+.|++++|. +..++...... ++|+.|++++|.
T Consensus 586 ~~lp--~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 586 RHLE--AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CBCC--CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred ccch--hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence 7432 7777888888888877765 23444556777 8888888877 55555433333 348888887763
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=127.53 Aligned_cols=176 Identities=20% Similarity=0.133 Sum_probs=104.9
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
...+++|+.|++++ +....++ +++.+++|+.|+....... ++. ++++++|++|++++|. ..+..+..++.+++|
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQ--LQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTT-SCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECTTSC--CCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCC-CCccccc-ccccCCCCcEEECCCCCCCCchh-hcCCCCCCEEECCCCc--cCccChhHhcCCcCC
Confidence 45667777777777 3333333 3666677777665444433 445 6777777777777765 444444456677777
Q ss_pred cEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCccc
Q 037964 92 DSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLK 169 (202)
Q Consensus 92 ~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 169 (202)
+.|+++++. +.+.. .+.. +++|+.|++++|++...++..++++++|++|++++|.+.+.. +...+.+++|+
T Consensus 112 ~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 184 (272)
T 3rfs_A 112 KELVLVENQ-----LQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLK 184 (272)
T ss_dssp CEEECTTSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CEEECCCCc-----CCccCHHHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCC
Confidence 777776532 01110 2445 667777777777777666666667777777777766654321 11234567777
Q ss_pred EEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 170 FLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 170 ~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
.|++++|. +..++.. ...+++|++|++++++
T Consensus 185 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 185 DLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 77777776 5444333 3456777777776653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=136.30 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=121.2
Q ss_pred CCCCccccc-cHHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecC
Q 037964 1 IPLSFIDHT-PEDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 1 ~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~ 75 (202)
+.++.++.+ |.++.++++|++|++++ |....+|. .++++++|++|+....... +.. +.++++|+.|++++|.
T Consensus 63 L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~- 139 (477)
T 2id5_A 63 LNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDND- 139 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTT-
T ss_pred CCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCc-
Confidence 356777777 66788999999999998 54445554 4688888888886555433 444 8888888888888886
Q ss_pred chHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
.....+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...+...+..+++|++|+++++..
T Consensus 140 -l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~l~~-l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 140 -LVYISHRAFSGLNSLEQLTLEKCN-----LTSIPTEALSH-LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp -CCEECTTSSTTCTTCCEEEEESCC-----CSSCCHHHHTT-CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred -cceeChhhccCCCCCCEEECCCCc-----CcccChhHhcc-cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 445556677788888888887632 01000 2455 66777777777776666555666666666666665443
Q ss_pred CCce----------------------EE-EcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecC
Q 037964 154 SRRK----------------------LA-CCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPC 200 (202)
Q Consensus 154 ~~~~----------------------~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c 200 (202)
.+.. ++ .....+++|+.|++++|. +..++.. ...+++|++|++++|
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence 2211 01 112346667777777766 4444332 345677777777765
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=145.68 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=138.0
Q ss_pred ccHHHh--ccccccEEEeCceeeccccccccccCCCcceecccccC---c-h-hHHHcCcC-------CccceeeEEeec
Q 037964 9 TPEDIW--KMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS---S-C-TRDILGRL-------PNLQSLKIFEDL 74 (202)
Q Consensus 9 lp~~~~--~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~---~-~-~~~~l~~l-------~~L~~L~l~~~~ 74 (202)
+|.+++ ++++|++|++++|.....+|..++++++|+.|+...+. + . |.+ ++++ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCc
Confidence 999987 99999999999966788999999999999999965543 3 3 555 5555 499999999997
Q ss_pred CchHHHHHH--HhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCC-cceEEecc
Q 037964 75 SHYQSVLSK--SLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH-LLVLKLKQ 150 (202)
Q Consensus 75 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~ 150 (202)
.. .+|. .++++++|+.|+++++. +. .+ .+.. +++|+.|++++|.+.. .+..+.++++ |+.|++++
T Consensus 560 --L~-~ip~~~~l~~L~~L~~L~Ls~N~-----l~-~lp~~~~-L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 560 --LE-EFPASASLQKMVKLGLLDCVHNK-----VR-HLEAFGT-NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp --CC-BCCCHHHHTTCTTCCEEECTTSC-----CC-BCCCCCT-TSEESEEECCSSCCSC-CCTTSCEECTTCCEEECCS
T ss_pred --CC-ccCChhhhhcCCCCCEEECCCCC-----cc-cchhhcC-CCcceEEECcCCcccc-chHHHhhccccCCEEECcC
Confidence 44 7888 99999999999998643 11 22 4566 8899999999999994 4567889999 99999998
Q ss_pred CccCCceEEEcCCCC--CcccEEEeccccCcccee---eCCC--ccccccEEeeecCC
Q 037964 151 NSFSRRKLACCSGGF--PCLKFLHLKSMLWLDEWT---MGTK--ATWKLEHLIINPCA 201 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~---~~~~--~~~~L~~L~i~~c~ 201 (202)
|.+. .++...... ++|+.|++++|.....++ ...+ ..++|+.|++++|.
T Consensus 629 N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 629 NKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp SCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred CCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 8876 234333333 459999999998333222 2222 34589999999874
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=128.14 Aligned_cols=185 Identities=17% Similarity=0.111 Sum_probs=115.8
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.+..+|..+. +++++|++++|......+..++.+++|++|+....... +.. ++++++|++|++++|. .
T Consensus 39 ~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~---l 112 (330)
T 1xku_A 39 SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQ---L 112 (330)
T ss_dssp TTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSC---C
T ss_pred cCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCc---C
Confidence 4567788887554 68999999995444444456899999999986655433 556 9999999999999886 2
Q ss_pred HHHHH----------------------HhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCC
Q 037964 79 SVLSK----------------------SLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPM 134 (202)
Q Consensus 79 ~~~~~----------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~ 134 (202)
..+|. .+.++++|+.|+++++.-. -.+.. .+.. +++|+.|++++|.+...+.
T Consensus 113 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~-l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK---SSGIENGAFQG-MKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC---GGGBCTTGGGG-CTTCCEEECCSSCCCSCCS
T ss_pred CccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC---ccCcChhhccC-CCCcCEEECCCCccccCCc
Confidence 22332 3344444444444432100 00000 3444 6666667776666665432
Q ss_pred ccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecCC
Q 037964 135 PTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 135 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~ 201 (202)
.. .++|++|++++|.+.+.. +.....+++|+.|++++|. +..++. ....+++|++|++++|.
T Consensus 189 ~~---~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 189 GL---PPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SC---CTTCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred cc---cccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence 22 156777777766654321 2334567888888888887 555543 34567888888888764
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-18 Score=128.54 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=126.8
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.++.++.++. +..+++|++|++++ +....++ .++.+++|++|+....... +..+++++++|++|++++|. ..+
T Consensus 49 ~~~~i~~~~~-l~~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~ 123 (272)
T 3rfs_A 49 NNSDIKSVQG-IQYLPNVRYLALGG-NKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ--LQS 123 (272)
T ss_dssp TTSCCCCCTT-GGGCTTCCEEECTT-SCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCC
T ss_pred CCCCcccccc-cccCCCCcEEECCC-CCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc--CCc
Confidence 4566777664 88999999999999 4444444 6888999999986655433 43338899999999999997 555
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
..+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..++.+++|++|++++|.+.+..
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQ-----LQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCHHHhccCCCCCEEECCCCc-----cCccCHHHhcc-CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 555668899999999998642 11111 3566 899999999999999888778899999999999988886532
Q ss_pred EEEcCCCCCcccEEEecccc
Q 037964 158 LACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~ 177 (202)
+.....+++|+.|++++|+
T Consensus 198 -~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 198 -DGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp -TTTTTTCTTCCEEECCSSC
T ss_pred -HHHHhCCcCCCEEEccCCC
Confidence 2234678999999999987
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=129.94 Aligned_cols=163 Identities=17% Similarity=0.096 Sum_probs=103.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccc-cccCCCcceecccccCch-----hHHHcCcCCccceeeEEeecC
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKY-CSALENLNFISALHLSSC-----TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~ 75 (202)
.++.++++|..+. ++|++|++++ +....+|.+ ++.+++|++|+....... +.. +..+++|++|++++|.
T Consensus 15 ~~~~l~~ip~~~~--~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~- 89 (306)
T 2z66_A 15 NSKGLTSVPTGIP--SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNG- 89 (306)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCS-
T ss_pred CCCCcccCCCCCC--CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCc-
Confidence 4567888887553 6999999999 555566665 689999999986554422 345 6778999999999986
Q ss_pred chHHHHHHHhccCCCccEEEeecCcchhhchhcc--c-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCc
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNESNMLGILQID--I-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNS 152 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 152 (202)
...++..+..+++|+.|+++++.- .+. . .+.. +++|+.|++++|.+....+..++++++|++|++++|.
T Consensus 90 --i~~l~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 90 --VITMSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp --EEEEEEEEETCTTCCEEECTTSEE-----ESSTTTTTTTT-CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred --cccChhhcCCCCCCCEEECCCCcc-----cccccchhhhh-ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 334666788889999998876320 000 0 2334 5566666666665555545555555666666665555
Q ss_pred cCCceEEEcCCCCCcccEEEecccc
Q 037964 153 FSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 153 ~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+.+...+.....+++|+.|++++|.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSC
T ss_pred cccccchhHHhhCcCCCEEECCCCC
Confidence 4432223333445555555555544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=133.71 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=62.9
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce-eeCCCccc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATW 190 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~ 190 (202)
+.. +++|+.|++++|.+...++..++++++|++|++++|.+.+. .+...+.+++|+.|++++|. +..+ +.....++
T Consensus 295 ~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 371 (455)
T 3v47_A 295 FSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLP 371 (455)
T ss_dssp TTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred ccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCc-ccccChhhccccc
Confidence 455 77888888888888877777788888888888887766432 13345668888888888887 5544 33456678
Q ss_pred cccEEeeecCC
Q 037964 191 KLEHLIINPCA 201 (202)
Q Consensus 191 ~L~~L~i~~c~ 201 (202)
+|++|++++|.
T Consensus 372 ~L~~L~L~~N~ 382 (455)
T 3v47_A 372 NLKELALDTNQ 382 (455)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECCCCc
Confidence 88888888763
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-17 Score=125.66 Aligned_cols=167 Identities=23% Similarity=0.223 Sum_probs=130.9
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeeccccccc-cccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCc
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKY-CSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
++++.++.+|. ++.++++|++|++++ +....+|.. +..+++|++|+....... +..++..+++|++|++++|.
T Consensus 44 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-- 120 (270)
T 2o6q_A 44 LQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-- 120 (270)
T ss_dssp CCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC--
T ss_pred CcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc--
Confidence 46788889886 689999999999999 554556655 588999999986655433 44438999999999999997
Q ss_pred hHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 77 YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
.....+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...++..+.++++|++|++++|.+.
T Consensus 121 l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 121 LKSLPPRVFDSLTKLTYLSLGYNE-----LQSLPKGVFDK-LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCeeCHHHhCcCcCCCEEECCCCc-----CCccCHhHccC-CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 555556678999999999998642 01110 3566 899999999999999988888999999999999988776
Q ss_pred CceEEEcCCCCCcccEEEecccc
Q 037964 155 RRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
... +.....+++|+.|++++|+
T Consensus 195 ~~~-~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVP-EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCC-TTTTTTCTTCCEEECCSSC
T ss_pred cCC-HHHhccccCCCEEEecCCC
Confidence 421 2234568999999999987
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-17 Score=131.30 Aligned_cols=186 Identities=12% Similarity=0.082 Sum_probs=139.8
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
+++.++++|.++. ++|++|++++|......+..++.+++|++|+....... +.. ++++++|++|++++|. ..
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~--l~ 113 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYNY--LS 113 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC--CS
T ss_pred CCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEEECCCCc--CC
Confidence 5678899998765 59999999994444444446899999999986655433 445 9999999999999997 44
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCC-CCCCCCCccccCCCCcceEEeccCcc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNT-KLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
+..+..++++++|++|+++++. +. .+ .+.. +++|+.|++++| .+...++..++++++|++|++++|.+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-----l~-~l~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-----YK-TLGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-----CS-SSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred cCCHhHhCCCccCCEEECCCCC-----Cc-ccCchhhhcc-CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 4444558999999999998642 01 11 2566 899999999999 47766677889999999999998887
Q ss_pred CCceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 154 SRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
.+.. +.....+++|+.|++++|. +..++.. ...+++|++|++++|.
T Consensus 187 ~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 187 QSYE-PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CEEC-TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred CccC-HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence 5422 3445678899999999987 5544332 2346888888888763
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=127.42 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=138.4
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
+..+.++|..+. ++|++|++++|......+..++.+++|++|+..+.... +..+++++++|++|++++|. ....
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~ 91 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSL 91 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEE
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc--cCcc
Confidence 456777887553 57999999994444444457899999999986665433 33339999999999999997 5555
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC-CccccCCCCcceEEeccCccCCce
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP-MPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
.+..+.++++|+.|+++++. +.+.. .+.. +++|+.|++++|.+.... +..++++++|++|++++|.+.+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETN-----LASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSC-----CCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ChhhhcCCccccEEECCCCC-----ccccCchhccc-CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 66789999999999997632 01110 3666 899999999999998754 678999999999999988875421
Q ss_pred EEEcCCCCCccc----EEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 158 LACCSGGFPCLK----FLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 158 ~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+.....+++|+ .|++++|. +..++.......+|++|++++|.
T Consensus 166 -~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 166 -CTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp -GGGGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC
T ss_pred -HHHhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCCc
Confidence 11222344455 89999988 77776655556689999998763
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=128.48 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=82.7
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
++.+++|++|++++|. .. .++. +..+++|+.|+++++. -..+ .+.. +++|+.|++++|++... ..+
T Consensus 217 ~~~~~~L~~L~l~~n~--l~-~~~~-~~~l~~L~~L~l~~n~------l~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNK--IT-DLSP-LANLSQLTWLEIGTNQ------ISDINAVKD-LTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp GGGCTTCCEEECCSSC--CC-CCGG-GTTCTTCCEEECCSSC------CCCCGGGTT-CTTCCEEECCSSCCCCC--GGG
T ss_pred hhcCCcCCEEEccCCc--cC-CCcc-hhcCCCCCEEECCCCc------cCCChhHhc-CCCcCEEEccCCccCCC--hhh
Confidence 4555666666666654 21 1222 5566666666665421 0011 3556 78888888888887764 467
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
..+++|+.|++++|.+.+.. +.....+++|+.|++++|. +..++. ...+++|++|++++|+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGG-HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCCCCCEEECcCCcCCCcC-hhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 78888888888877765433 2334568889999999888 655544 5668899999998875
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-18 Score=142.68 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=19.9
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
+.+|+.|++++|++...+...+..+++|++|++++|.+
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 34555666666655544443444455555555554444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-18 Score=132.95 Aligned_cols=192 Identities=18% Similarity=0.154 Sum_probs=115.8
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccc-cccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCch
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAH-PGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
.++.++..+..+.++++|++|++++|..... +|..+..+++|++|+...+... +.. ++++++|++|++++|....
T Consensus 78 ~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 78 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC
T ss_pred CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC
Confidence 3455555555566777777777777444333 6666677777777775544322 445 7777778888877773222
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhcc-c--ccccCCC-CccEEEeeCC--CCCC-CCCccccCCCCcceEEecc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQID-I--AEYQFPQ-SLTHLSLTNT--KLKD-DPMPTLEKLPHLLVLKLKQ 150 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~--~~~~~l~-~L~~L~l~~~--~~~~-~~~~~l~~l~~L~~L~l~~ 150 (202)
...++..+..+++|+.|+++++..+ .+. + .+.. ++ +|+.|++++| .+.. ..+..+..+++|++|++++
T Consensus 157 ~~~l~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 157 EFALQTLLSSCSRLDELNLSWCFDF----TEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp HHHHHHHHHHCTTCCEEECCCCTTC----CHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred HHHHHHHHhcCCCCCEEcCCCCCCc----ChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 2346666777777887777664111 111 1 3455 66 7888888777 3432 1233455777888888877
Q ss_pred Cc-cCCceEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecC
Q 037964 151 NS-FSRRKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 151 ~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c 200 (202)
|. +.+.. +.....+++|+.|++++|...... ......+++|++|++++|
T Consensus 232 ~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 232 SVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66 33332 223455678888888877533221 112345777888887766
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=138.20 Aligned_cols=141 Identities=17% Similarity=0.156 Sum_probs=81.3
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
++.++++|..+. ++|++|++++|......|..++.+++|++|+....... +.. ++++++|++|++++|. ..+
T Consensus 14 ~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~--l~~ 88 (549)
T 2z81_A 14 SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNH--LSS 88 (549)
T ss_dssp TSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSC--CCS
T ss_pred CCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCc--cCc
Confidence 456666776543 56777777774444444555677777777765444333 334 6777777777777765 445
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhc-cc--ccccCCCCccEEEeeCCC-CCCCCCccccCCCCcceEEeccCccC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQI-DI--AEYQFPQSLTHLSLTNTK-LKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~--~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
..+..++++++|++|+++++. +.+ .+ .+.. +++|+.|++++|. +...+...++++++|++|++++|.+.
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNP-----YQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCC-----CSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred cCHHHhccCCCCcEEECCCCc-----ccccchhhhhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 555557777777777776532 010 00 2444 5666666666665 33333345566666666666655543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-17 Score=122.61 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=112.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.++.++.+|..+. +++++|++++|......+..++.+++|++|+..+.... +..++.++++|++|++++|. ...
T Consensus 22 ~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~ 97 (251)
T 3m19_A 22 QGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ--LAS 97 (251)
T ss_dssp TTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCC
T ss_pred CCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc--ccc
Confidence 4566777777654 57888888884445555556788888888875554433 33327788888888888886 444
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
..+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..++++++|++|++++|.+.+..
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGNQ-----LKSLPSGVFDR-LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cChhHhcccCCCCEEEcCCCc-----CCCcChhHhcc-CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 444567778888888887532 01100 2455 778888888888888777667788888888888877765422
Q ss_pred EEEcCCCCCcccEEEecccc
Q 037964 158 LACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~ 177 (202)
+.....+++|+.|++++|+
T Consensus 172 -~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 172 -HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -TTTTTTCTTCCEEECCSCC
T ss_pred -HHHHhCCCCCCEEEeeCCc
Confidence 2234567788888888876
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=124.92 Aligned_cols=89 Identities=22% Similarity=0.117 Sum_probs=49.3
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.++.+..+|. +..+++|++|++++ +....++. +..+++|++|+..+.... ++. ++++++|++|++++|. .. .
T Consensus 52 ~~~~i~~~~~-~~~~~~L~~L~l~~-n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~l~~n~--i~-~ 124 (347)
T 4fmz_A 52 AGEKVASIQG-IEYLTNLEYLNLNG-NQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDN--IS-D 124 (347)
T ss_dssp CSSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECTTSC--CC-C
T ss_pred eCCccccchh-hhhcCCccEEEccC-Cccccchh-hhcCCcCCEEEccCCcccCchH-HcCCCcCCEEECcCCc--cc-C
Confidence 4555666654 66677777777777 33333443 666666666664444333 444 6666666666666664 11 1
Q ss_pred HHHHhccCCCccEEEeec
Q 037964 81 LSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~ 98 (202)
++. +..+++|+.|++++
T Consensus 125 ~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CGG-GTTCTTCCEEECTT
T ss_pred chh-hccCCceeEEECCC
Confidence 222 55555555555554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-17 Score=135.21 Aligned_cols=168 Identities=16% Similarity=0.207 Sum_probs=123.6
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
++++.++.++ .++.++++|++|++++|......|..++.+++|++|+....... +.++++++++|++|++++|. .
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l 110 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP--Y 110 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC--C
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc--c
Confidence 4677888874 67999999999999995556666677999999999986665533 43339999999999999996 3
Q ss_pred HH-HHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 78 QS-VLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 78 ~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
.. ..+..++++++|+.|+++++.. .+.+ .+.. +++|+.|++++|.+.+..+..++++++|++|+++.+..
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~-----~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVET-----FSEIRRIDFAG-LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSS-----CCEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred cccchhhhhhccCCccEEECCCCcc-----ccccCHhhhhc-ccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 33 3466789999999999987431 1111 3566 88899999999998887777888888888888876654
Q ss_pred CCceEEEcCCCCCcccEEEecccc
Q 037964 154 SRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
.... ....+.+++|+.|++++|.
T Consensus 185 ~~~~-~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 185 AFLL-EIFADILSSVRYLELRDTN 207 (549)
T ss_dssp TTHH-HHHHHSTTTBSEEEEESCB
T ss_pred cccc-hhhHhhcccccEEEccCCc
Confidence 3211 1112346777777777776
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=118.50 Aligned_cols=171 Identities=17% Similarity=0.112 Sum_probs=133.9
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDS 93 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (202)
...+++++++ +....+|.++. ++++.|+....... +.. ++++++|++|++++|. ..+..+..+..+++|+.
T Consensus 14 ~~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCc--CCccCHhHhccCCcCCE
Confidence 4678999999 77778887665 68888886555433 445 9999999999999997 56666677899999999
Q ss_pred EEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEE
Q 037964 94 LKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171 (202)
Q Consensus 94 L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 171 (202)
|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|++|++++|.+.+.. +...+.+++|+.|
T Consensus 88 L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 160 (251)
T 3m19_A 88 LGLANNQ-----LASLPLGVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTL 160 (251)
T ss_dssp EECTTSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEE
T ss_pred EECCCCc-----ccccChhHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEE
Confidence 9998642 11111 3566 899999999999999888888899999999999988876422 2235678999999
Q ss_pred EeccccCccceee-CCCccccccEEeeecCC
Q 037964 172 HLKSMLWLDEWTM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 172 ~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~ 201 (202)
++++|. +..++. ....+++|++|++.+++
T Consensus 161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 999998 666554 34668999999999875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-17 Score=135.90 Aligned_cols=187 Identities=16% Similarity=0.085 Sum_probs=138.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
++.+++++|..+. +++++|++++|......+..++++++|++|+....... +.. ++++++|++|++++|. ..
T Consensus 19 ~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~--l~ 93 (606)
T 3vq2_A 19 MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNP--IQ 93 (606)
T ss_dssp TTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCC--CC
T ss_pred cCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCc--cc
Confidence 4667889998664 89999999995445555557899999999986665433 445 9999999999999997 66
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCC-CCccccCCCCcceEEeccCccCC
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDD-PMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
+..|..++++++|++|+++++. +.+.. .+.. +++|+.|++++|.+... .+..++++++|++|++++|.+.+
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETK-----LASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSC-----CCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccChhhcCCcccCCEEEccCCc-----cccccccccCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 6668899999999999998642 01100 4667 89999999999999863 36789999999999999887754
Q ss_pred ceEEEcCCCCCcc----cEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 156 RKLACCSGGFPCL----KFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 156 ~~~~~~~~~~~~L----~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.. +...+.+++| ..|++++|. +..++.......+|++|++++|.
T Consensus 168 ~~-~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 168 IT-VNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp EC-TTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCC
T ss_pred cC-hhhhhhhhccccccceeeccCCC-cceeCcccccCceeeeeeccCCc
Confidence 21 1112223333 378888887 66665554444588898888763
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-16 Score=120.03 Aligned_cols=167 Identities=22% Similarity=0.165 Sum_probs=96.4
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
...+++|++|++++ +....++ +++.+++|++|+....... ... +.++++|++|++++|. .. .+ ..++.+++|
T Consensus 42 ~~~l~~L~~L~l~~-~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~--l~-~~-~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK--VK-DL-SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CC-CG-GGGTTCTTC
T ss_pred hhhcCcccEEEccC-CCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc--CC-CC-hhhccCCCC
Confidence 34566777777777 3333443 3666666666665444333 334 6667777777777665 22 22 236666777
Q ss_pred cEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccE
Q 037964 92 DSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKF 170 (202)
Q Consensus 92 ~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 170 (202)
+.|+++++. +. .+ .+.. +++|+.|++++|++... ..++.+++|++|++++|.+.+.. ....+++|+.
T Consensus 115 ~~L~L~~n~-----i~-~~~~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHNG-----IS-DINGLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQN 182 (291)
T ss_dssp CEEECTTSC-----CC-CCGGGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCCE
T ss_pred CEEECCCCc-----CC-CChhhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch---hhcCCCccCE
Confidence 777776432 00 01 3445 66677777777766653 45666677777777666654422 1455667777
Q ss_pred EEeccccCccceeeCCCccccccEEeeecC
Q 037964 171 LHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 171 L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
|++++|. ++.++. ...+++|+.|+++++
T Consensus 183 L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 183 LYLSKNH-ISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp EECCSSC-CCBCGG-GTTCTTCSEEEEEEE
T ss_pred EECCCCc-CCCChh-hccCCCCCEEECcCC
Confidence 7777665 554432 345666777766654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=117.71 Aligned_cols=183 Identities=17% Similarity=0.122 Sum_probs=135.0
Q ss_pred ccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccC-ch--hHHHcCcCCccceeeEEe-ecCchHHH
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS-SC--TRDILGRLPNLQSLKIFE-DLSHYQSV 80 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~--~~~~l~~l~~L~~L~l~~-~~~~~~~~ 80 (202)
.++++|. + ..+|++|++++|......+..++.+++|++|+..... .. +..+++++++|++|++++ |. ....
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l~~i 96 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--LTYI 96 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT--CCEE
T ss_pred CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC--eeEc
Confidence 3677887 3 3489999999944444444468899999999976664 33 443399999999999998 76 4444
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCcc---EEEeeCC-CCCCCCCccccCCCCcc-eEEeccCccC
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLT---HLSLTNT-KLKDDPMPTLEKLPHLL-VLKLKQNSFS 154 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~ 154 (202)
.+..+..+++|+.|+++++. +.+ + .+.. +++|+ .|++++| .+...+...+.++++|+ .|++++|.+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-----l~~-lp~~~~-l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-----LKM-FPDLTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-----CCS-CCCCTT-CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CHHHhCCCCCCCEEeCCCCC-----Ccc-cccccc-ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 44678899999999998632 011 1 2344 66666 9999999 99888878899999999 9999988875
Q ss_pred CceEEEcCCCCCcccEEEeccccCccceeeC-CCcc-ccccEEeeecCC
Q 037964 155 RRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKAT-WKLEHLIINPCA 201 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~L~i~~c~ 201 (202)
.++......++|+.|++++|..++.++.. ...+ ++|++|+++++.
T Consensus 170 --~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 170 --SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp --EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred --ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 23332223378999999999657766543 3556 899999998764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=124.27 Aligned_cols=176 Identities=17% Similarity=0.166 Sum_probs=100.9
Q ss_pred cccccEEEeCceeecccccccc--ccCCCcceecccccCch------h-HHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 16 MHKLRHLNFGYIKLHAHPGKYC--SALENLNFISALHLSSC------T-RDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 16 l~~L~~L~l~~~~~~~~~p~~l--~~l~~L~~L~~~~~~~~------~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
+++|++|++++|......|..+ +.+++|++|+..++... . .. +..+++|++|++++|. .....+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~-~~~~~~L~~L~Ls~n~--l~~~~~~~~~ 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ-QWLKPGLKVLSIAQAH--SPAFSCEQVR 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH-TTBCSCCCEEEEECCS--SCCCCTTSCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH-hhhccCCCEEEeeCCC--cchhhHHHhc
Confidence 3456666666644444555544 55566666554333211 1 22 4455566666666554 3333444555
Q ss_pred cCCCccEEEeecCc-ch---h------h-c-------hh-ccc--------c-cccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 87 ELRCLDSLKLVNES-NM---L------G-I-------LQ-IDI--------A-EYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 87 ~l~~L~~L~l~~~~-~~---~------~-~-------~~-~~~--------~-~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
.+++|++|+++++. .. + . + ++ +.+ + +.. +++|+.|++++|++....+..+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-GVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCSCCS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-CCCCCEEECCCCCCCccchhhHH
Confidence 55556666555532 00 0 0 0 00 011 1 244 67888888888888776555555
Q ss_pred CC---CCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 139 KL---PHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 139 ~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+ ++|++|++++|.+.. ++ ..-+++|+.|++++|. +..++. ...+++|++|++++++
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~--lp--~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQ--VP--KGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCS--CC--SCCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCCCCCCc--hh--hhhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 44 688888888777752 22 2234788888888887 666544 4567888888888764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-16 Score=130.47 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=107.5
Q ss_pred ccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---c
Q 037964 38 SALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---A 111 (202)
Q Consensus 38 ~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~ 111 (202)
+.+++|++|+....... +.. ++++++|++|++++|.......+|..++.+++|+.|+++++. +.+.+ .
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-----l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-----VSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-----CBCCGGGCS
T ss_pred hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-----CCcccccch
Confidence 55667777765444322 555 888888999988888733334677888888899999888643 12212 2
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATW 190 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~ 190 (202)
+.. +++|+.|++++|++.+..+..+. ++|+.|++++|.+. .++.....+++|+.|++++|. +..++.. ...++
T Consensus 395 ~~~-l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 395 CSW-TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLT 468 (520)
T ss_dssp CCC-CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred hcc-CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCc-CCccCHHHhccCC
Confidence 455 78889999988888754443333 68899999888775 234444578899999999987 7777665 56688
Q ss_pred cccEEeeecCC
Q 037964 191 KLEHLIINPCA 201 (202)
Q Consensus 191 ~L~~L~i~~c~ 201 (202)
+|++|++++++
T Consensus 469 ~L~~L~l~~N~ 479 (520)
T 2z7x_B 469 SLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECcCCC
Confidence 89999998875
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=138.74 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=135.0
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccC--ch--hHHHcCcCCccceeeEEeecCch
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS--SC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~--~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
++.+++.+|. -.++|++|++++|......|..++++++|+.|+..... .. +.. ++++++|++|++++|. .
T Consensus 12 s~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~--l 85 (844)
T 3j0a_A 12 RFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSK--I 85 (844)
T ss_dssp SCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCC--C
T ss_pred cCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCc--C
Confidence 3567888887 56799999999955565667778999999999865552 22 444 9999999999999987 6
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCCCCCCCCC-ccccCCCCcceEEeccCc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNTKLKDDPM-PTLEKLPHLLVLKLKQNS 152 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 152 (202)
....|..++++++|+.|+++++. +.+.+ ++.. +++|+.|++++|.+....+ ..++++++|++|++++|.
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCG-----LSDAVLKDGYFRN-LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCC-----CSSCCSTTCCCSS-CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cccCHhHccCCcccCEeeCcCCC-----CCcccccCccccc-cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 66678889999999999998643 12222 3667 8899999999998887654 578899999999999877
Q ss_pred cCCceEEEcCCCC--CcccEEEeccccCccceeeCCCcccc------ccEEeeecC
Q 037964 153 FSRRKLACCSGGF--PCLKFLHLKSMLWLDEWTMGTKATWK------LEHLIINPC 200 (202)
Q Consensus 153 ~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~------L~~L~i~~c 200 (202)
+.+.. +.....+ ++|+.|++++|......+...+.++. |+.|++++|
T Consensus 160 i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 160 IFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CCCCC-SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCeeC-HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 75422 1122223 77888888888744444444343443 888888776
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-16 Score=131.98 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
+++|+.|++++|.+... .....+++|+.|++++|.+.+ ++.....+++|+.|++++|. +..++.....+++|+.|
T Consensus 168 l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHF 242 (487)
T ss_dssp TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred CCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEE
Confidence 55666666666665543 222345666666666555543 22234456666677776666 55555555556677777
Q ss_pred eeecCC
Q 037964 196 IINPCA 201 (202)
Q Consensus 196 ~i~~c~ 201 (202)
++++|+
T Consensus 243 ~l~~N~ 248 (487)
T 3oja_A 243 DLRGNG 248 (487)
T ss_dssp ECTTCC
T ss_pred EcCCCC
Confidence 776654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=128.74 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=45.6
Q ss_pred CCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+++.++.+| .++.++++|++|++++|......|..++++++|++|+....... ++. . .+++|++|++++|. ..+
T Consensus 29 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~-~l~~L~~L~L~~N~--l~~ 104 (520)
T 2z7x_B 29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-H-PTVNLKHLDLSFNA--FDA 104 (520)
T ss_dssp CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-C-CCCCCSEEECCSSC--CSS
T ss_pred CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-c-ccCCccEEeccCCc--ccc
Confidence 445555554 34666666666666663333334455555666665554333222 212 1 44555555555553 222
Q ss_pred -HHHHHhccCCCccEEEeec
Q 037964 80 -VLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 80 -~~~~~l~~l~~L~~L~l~~ 98 (202)
.+|..++++++|++|++++
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEE
T ss_pred ccchhhhccCCcceEEEecC
Confidence 2344555555555555544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-16 Score=112.72 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=101.9
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
...+++|++|++++ +....+| ++..+++|++|+....... ++. +..+++|++|++++|. .....+..++.+++|
T Consensus 40 ~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLAN-INVTDLT-GIEYAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKD--VTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEES-SCCSCCT-TGGGCTTCSEEEEESCCCSCCGG-GTTCTTCCEEEEECTT--CBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccC-CCccChH-HHhcCCCCCEEEccCCCCCcchh-hhcCCCCCEEEeECCc--cCcccChhhcCCCCC
Confidence 36778889999988 5545666 6888888888886666544 666 8888888888888886 555566677777888
Q ss_pred cEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCC-CCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcc
Q 037964 92 DSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTK-LKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCL 168 (202)
Q Consensus 92 ~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 168 (202)
+.|+++++. +.+.. .+.. +++|+.|++++|. +... ..+..+++|++|++++|.+.+- + ....+++|
T Consensus 115 ~~L~Ls~n~-----i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~i~~~--~-~l~~l~~L 183 (197)
T 4ezg_A 115 TLLDISHSA-----HDDSILTKINT-LPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY--R-GIEDFPKL 183 (197)
T ss_dssp CEEECCSSB-----CBGGGHHHHTT-CSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBCCCCC--T-TGGGCSSC
T ss_pred CEEEecCCc-----cCcHhHHHHhh-CCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCCCcCh--H-HhccCCCC
Confidence 888877532 11111 3555 7777777777776 5543 3567777777777776666541 2 34556777
Q ss_pred cEEEecccc
Q 037964 169 KFLHLKSML 177 (202)
Q Consensus 169 ~~L~l~~~~ 177 (202)
+.|++++|+
T Consensus 184 ~~L~l~~N~ 192 (197)
T 4ezg_A 184 NQLYAFSQT 192 (197)
T ss_dssp CEEEECBC-
T ss_pred CEEEeeCcc
Confidence 777777765
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=119.02 Aligned_cols=168 Identities=13% Similarity=0.087 Sum_probs=133.0
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
..++++|++|++++ +....+| .+..+++|++|+....... ... ++++++|++|++++|. ..+ + ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~--l~~-~-~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFG-TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--LKN-V-SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--CSC-C-GGGTTCTTC
T ss_pred HHHcCCcCEEEeeC-CCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc--CCC-c-hhhcCCCCC
Confidence 56789999999999 5555566 5888999999986665544 555 8999999999999997 322 3 368999999
Q ss_pred cEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccE
Q 037964 92 DSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKF 170 (202)
Q Consensus 92 ~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 170 (202)
+.|+++++. +. .+ .+.. +++|+.|++++|.+...+ .++.+++|++|++++|.+.+.. ....+++|+.
T Consensus 110 ~~L~l~~n~-----l~-~~~~l~~-l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~ 177 (308)
T 1h6u_A 110 KTLDLTSTQ-----IT-DVTPLAG-LSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTT 177 (308)
T ss_dssp CEEECTTSC-----CC-CCGGGTT-CTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCE
T ss_pred CEEECCCCC-----CC-CchhhcC-CCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCCh---hhcCCCCCCE
Confidence 999998643 01 11 4667 899999999999998754 3889999999999988876522 2678999999
Q ss_pred EEeccccCccceeeCCCccccccEEeeecCC
Q 037964 171 LHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 171 L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
|++++|. +..++. ...+++|++|++++|.
T Consensus 178 L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 178 LKADDNK-ISDISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EECCSSC-CCCCGG-GGGCTTCCEEECTTSC
T ss_pred EECCCCc-cCcChh-hcCCCCCCEEEccCCc
Confidence 9999998 665554 4678999999999874
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-17 Score=126.58 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=138.7
Q ss_pred cHHHhcc--ccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCchHHHHHHH
Q 037964 10 PEDIWKM--HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHYQSVLSKS 84 (202)
Q Consensus 10 p~~~~~l--~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (202)
|..+.++ +++++|++++|......+ .+..+++|++|+...... . ...++.++++|++|++++|. ..+..+..
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~ 137 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPIVNT 137 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--cCHHHHHH
Confidence 5667777 899999999944444444 467789999998655432 2 33338999999999999997 77889999
Q ss_pred hccCCCccEEEeecCcchhhchhcc-c--ccccCCCCccEEEeeCC-CCCCC-CCccccCCC-CcceEEeccCc--cCCc
Q 037964 85 LCELRCLDSLKLVNESNMLGILQID-I--AEYQFPQSLTHLSLTNT-KLKDD-PMPTLEKLP-HLLVLKLKQNS--FSRR 156 (202)
Q Consensus 85 l~~l~~L~~L~l~~~~~~~~~~~~~-~--~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~--~~~~ 156 (202)
++++++|++|+++++..+ .+. + .+.. +++|+.|++++| .+... .+..+..++ +|++|++++|. +.+.
T Consensus 138 l~~~~~L~~L~L~~~~~l----~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGF----SEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp HTTCTTCSEEECTTCBSC----CHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred HhcCCCCCEEECCCCCCC----CHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 999999999999875221 111 1 3566 899999999999 88754 245677899 99999999884 4433
Q ss_pred eEEEcCCCCCcccEEEeccccCcc-ceeeCCCccccccEEeeecCC
Q 037964 157 KLACCSGGFPCLKFLHLKSMLWLD-EWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.++.....+++|+.|++++|..+. ..+.....+++|++|++++|.
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 334444568999999999998443 334445678999999999985
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=122.88 Aligned_cols=175 Identities=17% Similarity=0.096 Sum_probs=102.5
Q ss_pred hccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 14 WKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
..+++|++|++++|......|..++.+++|++|+..+.... ... ++.+++|++|++++|. .. .+...++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~--l~-----~l~~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQ-----ELLVGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE--EE-----EEEECTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc--cc-----cccCCCCcC
Confidence 34556777777774334444455666777777665444433 333 6666777777776664 11 111234555
Q ss_pred EEEeecCcc------hhh----c------hhccc--ccccCCCCccEEEeeCCCCCCCCCcccc-CCCCcceEEeccCcc
Q 037964 93 SLKLVNESN------MLG----I------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLE-KLPHLLVLKLKQNSF 153 (202)
Q Consensus 93 ~L~l~~~~~------~~~----~------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 153 (202)
.|+++++.- .+. + +.+.. .+.. +++|+.|++++|.+...++..+. .+++|++|++++|.+
T Consensus 103 ~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp EEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 555443210 000 0 01100 3445 67788888888877765555553 677888888877776
Q ss_pred CCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 154 SRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
... + ....+++|+.|++++|. +..++.....+++|++|++++|.
T Consensus 182 ~~~--~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 182 YDV--K-GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CEE--E-CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC
T ss_pred ccc--c-cccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc
Confidence 532 2 23347888888888887 66666656677888888888763
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-16 Score=123.36 Aligned_cols=186 Identities=13% Similarity=0.060 Sum_probs=133.4
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-h----------------HH-HcCc
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-T----------------RD-ILGR 61 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~----------------~~-~l~~ 61 (202)
++++.++.++ .++.++++|++|++++|......+ +..+++|++|+....... . .+ ....
T Consensus 41 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~ 118 (317)
T 3o53_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118 (317)
T ss_dssp CTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC
T ss_pred CcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc
Confidence 4678888886 579999999999999954443333 788888888874433211 0 00 0123
Q ss_pred CCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 62 LPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
+++|+.|++++|. .....+..++.+++|+.|+++++. +.+.. .... +++|+.|++++|.+... ....
T Consensus 119 ~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~--~~~~ 188 (317)
T 3o53_A 119 GQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNE-----IDTVNFAELAAS-SDTLEHLNLQYNFIYDV--KGQV 188 (317)
T ss_dssp CSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTSC-----CCEEEGGGGGGG-TTTCCEEECTTSCCCEE--ECCC
T ss_pred cCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCCC-----CCcccHHHHhhc-cCcCCEEECCCCcCccc--cccc
Confidence 5667777777776 444445577788888988887632 11111 2245 79999999999998875 3344
Q ss_pred CCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 139 KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+++|++|++++|.+.+ ++.....+++|+.|++++|. +..++.....+++|+.|++++++
T Consensus 189 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred ccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 68999999999888764 33345678999999999998 77777777778999999999875
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=124.09 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=39.1
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
+++|+.|++++|++.+.++ ++.+++|+.|++++|.+.+. .....+++|+.|++++|. +..+.. ...+++|++|
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 380 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQL 380 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEE
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEE
Confidence 4455555555555444322 44555555555554444331 123445666666666665 333322 3455666666
Q ss_pred eeecC
Q 037964 196 IINPC 200 (202)
Q Consensus 196 ~i~~c 200 (202)
++++|
T Consensus 381 ~l~~n 385 (466)
T 1o6v_A 381 GLNDQ 385 (466)
T ss_dssp ECCCE
T ss_pred eccCC
Confidence 66654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.9e-16 Score=134.03 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=43.8
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEH 194 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~ 194 (202)
+++|+.|++++|++...++..+.++++|++|++++|.+.+.. +.....+++|+.|++++|. +..++.. ...+++|++
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCE
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCE
Confidence 455555555555555554455555566666666555543211 2233455666666666664 4433322 244566666
Q ss_pred EeeecC
Q 037964 195 LIINPC 200 (202)
Q Consensus 195 L~i~~c 200 (202)
|++++|
T Consensus 367 L~Ls~N 372 (844)
T 3j0a_A 367 LDLRDN 372 (844)
T ss_dssp EEEETC
T ss_pred EECCCC
Confidence 666655
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-16 Score=132.54 Aligned_cols=189 Identities=19% Similarity=0.148 Sum_probs=114.3
Q ss_pred CCCccccc-cHHHhccccccEEEeCceeeccccc-cccccCCCcceecccccCch-------------------------
Q 037964 2 PLSFIDHT-PEDIWKMHKLRHLNFGYIKLHAHPG-KYCSALENLNFISALHLSSC------------------------- 54 (202)
Q Consensus 2 ~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~~~------------------------- 54 (202)
.++.++.+ |.++..+++|++|++++|.....+| ..+..+++|++|+.......
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 45566665 4567777778888877744444444 34666666666664333211
Q ss_pred ----hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhc---------cc-ccccCCCCcc
Q 037964 55 ----TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQI---------DI-AEYQFPQSLT 120 (202)
Q Consensus 55 ----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------~~-~~~~~l~~L~ 120 (202)
+.. ++++++|+.|++++|. .....+..++.+++|+.|+++++. +.+ .. .+.. +++|+
T Consensus 469 ~~~~p~~-~~~l~~L~~L~Ls~N~--l~~i~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~~~~~~~~~-l~~L~ 539 (680)
T 1ziw_A 469 VDSSPSP-FQPLRNLTILDLSNNN--IANINDDMLEGLEKLEILDLQHNN-----LARLWKHANPGGPIYFLKG-LSHLH 539 (680)
T ss_dssp TTCSSCT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-----CGGGGSTTSTTSCCCTTTT-CTTCC
T ss_pred cccCCcc-cccCCCCCEEECCCCC--CCcCChhhhccccccCEEeCCCCC-----ccccchhhccCCcchhhcC-CCCCC
Confidence 223 4445555555555554 333333345555555555555421 010 00 2455 78888
Q ss_pred EEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC-C-ccccccEEeee
Q 037964 121 HLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-K-ATWKLEHLIIN 198 (202)
Q Consensus 121 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~-~~~~L~~L~i~ 198 (202)
.|++++|++...+...++++++|+.|++++|.+..-. +.....+++|+.|++++|. +..++... + .+++|++++++
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECT
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCc-CCccChhHhcccccccCEEEcc
Confidence 8888888888777677888888888888877775311 1123467888888888886 65554332 2 57888888888
Q ss_pred cCC
Q 037964 199 PCA 201 (202)
Q Consensus 199 ~c~ 201 (202)
++|
T Consensus 618 ~N~ 620 (680)
T 1ziw_A 618 FNP 620 (680)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-16 Score=124.08 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=116.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|..+. ++|++|++++|......|..++.+++|++|+....... +.. ++++++|++|++++|. .
T Consensus 41 ~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~---l 114 (332)
T 2ft3_A 41 SDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNH---L 114 (332)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSC---C
T ss_pred CCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCc---C
Confidence 3455666666543 56777777773333333445666777777665444332 344 6777777777777664 2
Q ss_pred HHHHHHhccCCCccEEEeecCc------chhh-c-------hhc--------------------------cc---ccccC
Q 037964 79 SVLSKSLCELRCLDSLKLVNES------NMLG-I-------LQI--------------------------DI---AEYQF 115 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~------~~~~-~-------~~~--------------------------~~---~~~~~ 115 (202)
..+|..+. ++|+.|+++++. ..+. + +.+ .+ ....
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~- 191 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL- 191 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS-
T ss_pred CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc-
Confidence 23444333 567777776521 1110 0 000 00 0011
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
.++|+.|++++|.+...++..+.++++|++|++++|.+.+.. +.....+++|+.|++++|. +..++.....+++|++|
T Consensus 192 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVV 269 (332)
T ss_dssp CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEE
T ss_pred cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEE
Confidence 246777777777777776677888888888888877765422 2234568899999999987 77777767778999999
Q ss_pred eeecCC
Q 037964 196 IINPCA 201 (202)
Q Consensus 196 ~i~~c~ 201 (202)
++++++
T Consensus 270 ~l~~N~ 275 (332)
T 2ft3_A 270 YLHTNN 275 (332)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 998764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-16 Score=128.98 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=91.0
Q ss_pred ccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---c
Q 037964 38 SALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---A 111 (202)
Q Consensus 38 ~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~ 111 (202)
+.+++|++|+....... +.. ++++++|+.|++++|+......+|..++++++|+.|+++++. +.+.+ .
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-----l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-----LNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-----CBSCCSSCC
T ss_pred cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-----CCCccChhh
Confidence 34455555553333221 444 666777777777766522223556666677777777776532 11111 2
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATW 190 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~ 190 (202)
+.. +++|+.|++++|++.+..+..+. ++|+.|++++|.+. .++.....+++|+.|++++|. +..++.. ...++
T Consensus 424 ~~~-l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 497 (562)
T 3a79_B 424 CAW-AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLT 497 (562)
T ss_dssp CCC-CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCT
T ss_pred hcC-cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCC
Confidence 444 66777777777776643332222 57777888777654 234444567888888888887 6666655 56678
Q ss_pred cccEEeeecCC
Q 037964 191 KLEHLIINPCA 201 (202)
Q Consensus 191 ~L~~L~i~~c~ 201 (202)
+|+.|++++++
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 88888888765
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-16 Score=131.62 Aligned_cols=130 Identities=21% Similarity=0.157 Sum_probs=86.1
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCch---h-HHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---T-RDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
++|+.|++++|......|..++.+++|+.|+....... + .. +..+++|++|++++|. .....+..+..+++|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE-WRGLENIFEIYLSYNK--YLQLTRNSFALVPSLQ 457 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG-GTTCTTCCEEECCSCS--EEECCTTTTTTCTTCC
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc-ccCcccccEEecCCCC--cceeChhhhhcCcccc
Confidence 68999999996566667778999999999986655432 3 45 8999999999999987 5555556667777777
Q ss_pred EEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 93 SLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 93 ~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
.|++.++.-. -.+.+ ++.. +++|+.|++++|++...++..+.++++|++|++++|.+
T Consensus 458 ~L~l~~n~l~---~~~~~p~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 458 RLMLRRVALK---NVDSSPSPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp EEECTTSCCB---CTTCSSCTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cchhcccccc---ccccCCccccc-CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 7777653200 00011 3444 55666666666666655555555566666666655544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=123.16 Aligned_cols=178 Identities=17% Similarity=0.091 Sum_probs=107.5
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
++++.++.+| ++..+++|++|++++ +....+| ++.+++|++|+....... . + ++++++|++|++++|. ..+
T Consensus 49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~-n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~--l~~ 120 (457)
T 3bz5_A 49 CHNSSITDMT-GIEKLTGLTKLICTS-NNITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNK--LTK 120 (457)
T ss_dssp CCSSCCCCCT-TGGGCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSC--CSC
T ss_pred ccCCCcccCh-hhcccCCCCEEEccC-CcCCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCc--CCe
Confidence 3567788887 688899999999998 4433444 777888888875544433 3 3 7778888888888776 222
Q ss_pred HHHHHhccCCCccEEEeecCc-chhh------c----hhc-----ccccccCCCCccEEEeeCCCCCCCCCccccCCCCc
Q 037964 80 VLSKSLCELRCLDSLKLVNES-NMLG------I----LQI-----DIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHL 143 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~-~~~~------~----~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 143 (202)
++ ++.+++|+.|+++++. ..++ + +.+ .+.+.. +++|+.|++++|++...+ ++.+++|
T Consensus 121 -l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~-l~~L~~L~ls~n~l~~l~---l~~l~~L 193 (457)
T 3bz5_A 121 -LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTP-QTQLTTLDCSFNKITELD---VSQNKLL 193 (457)
T ss_dssp -CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTT-CTTCCEEECCSSCCCCCC---CTTCTTC
T ss_pred -ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccccccc-CCcCCEEECCCCccceec---cccCCCC
Confidence 22 6677777777776531 0000 0 111 113444 667777777777766643 5566666
Q ss_pred ceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 144 LVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
+.|++++|.+.+. ..+.+++|+.|++++|. +..++ .+.+++|+.|+++++
T Consensus 194 ~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 194 NRLNCDTNNITKL----DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCSCC----CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS
T ss_pred CEEECcCCcCCee----ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCC
Confidence 6666666655432 23456666666666665 44443 344566666666554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=123.61 Aligned_cols=180 Identities=19% Similarity=0.146 Sum_probs=127.9
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.++.++.++. +.++++|++|++++|......| ++.+++|++|+....... ... +..+++|+.|++++|. ..+
T Consensus 184 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~--l~~ 257 (466)
T 1o6v_A 184 ISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQ--ISN 257 (466)
T ss_dssp CCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC--CCC
T ss_pred CcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchh-hhcCCCCCEEECCCCc--ccc
Confidence 35667777754 8889999999999943333333 677888888876555444 556 7888999999999886 332
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEE
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLA 159 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 159 (202)
. +. +..+++|+.|+++++. +.+...+.. +++|+.|++++|++...+ .++.+++|+.|++++|.+.+..
T Consensus 258 ~-~~-~~~l~~L~~L~l~~n~-----l~~~~~~~~-l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~-- 325 (466)
T 1o6v_A 258 L-AP-LSGLTKLTELKLGANQ-----ISNISPLAG-LTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS-- 325 (466)
T ss_dssp C-GG-GTTCTTCSEEECCSSC-----CCCCGGGTT-CTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG--
T ss_pred c-hh-hhcCCCCCEEECCCCc-----cCccccccC-CCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCch--
Confidence 2 22 7788889999987632 011003556 788899999988887753 3778889999999888776532
Q ss_pred EcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 160 CCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
....+++|+.|++++|. +..++ ....+++|+.|++++|.
T Consensus 326 -~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 326 -PVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp -GGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred -hhccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 24578889999998886 55553 34567888888888774
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=127.66 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=51.2
Q ss_pred CCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+++.++.+| .++.++++|++|++++|......|..++++++|++|+....... .+. . .+++|++|++++|. ..+
T Consensus 60 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~-~l~~L~~L~Ls~N~--l~~ 135 (562)
T 3a79_B 60 SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-C-PMASLRHLDLSFND--FDV 135 (562)
T ss_dssp CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS-C-CCTTCSEEECCSSC--CSB
T ss_pred CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc-c-ccccCCEEECCCCC--ccc
Confidence 456666665 35666777777777764334444555666666666654443322 222 2 45566666666654 222
Q ss_pred -HHHHHhccCCCccEEEeec
Q 037964 80 -VLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 80 -~~~~~l~~l~~L~~L~l~~ 98 (202)
..|..++++++|+.|++++
T Consensus 136 l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 136 LPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp CCCCGGGGGCTTCCEEEEEC
T ss_pred cCchHhhcccCcccEEecCC
Confidence 2235566666666666654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-16 Score=127.48 Aligned_cols=181 Identities=16% Similarity=0.101 Sum_probs=112.0
Q ss_pred cccHHHhccc----cccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHH
Q 037964 8 HTPEDIWKMH----KLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLS 82 (202)
Q Consensus 8 ~lp~~~~~l~----~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (202)
.+|.++..+. +|++|++++|......|..++.+++|++|+..++... ... ++.+++|++|++++|. .. .
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~-~-- 94 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQ-E-- 94 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE--EE-E--
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc--CC-C--
Confidence 3455555554 6777777774444445556777777777765554433 333 6677777777777765 21 1
Q ss_pred HHhccCCCccEEEeecCc--c----hhh----c------hhccc--ccccCCCCccEEEeeCCCCCCCCCcccc-CCCCc
Q 037964 83 KSLCELRCLDSLKLVNES--N----MLG----I------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLE-KLPHL 143 (202)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~--~----~~~----~------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L 143 (202)
+...++|+.|+++++. + .+. + +.+.. .+.. +++|+.|++++|.+.+.++..+. .+++|
T Consensus 95 --l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 95 --LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp --EEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 1122455555554321 0 000 0 11111 3455 67888888888887776566665 67888
Q ss_pred ceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 144 LVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+.|++++|.+.+. .....+++|+.|++++|. +..++.....+++|+.|++++|.
T Consensus 172 ~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 172 EHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEECTTSCCCEE---ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC
T ss_pred cEEecCCCccccc---cccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc
Confidence 8888887776542 233458888888888887 76666666778888888888763
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=130.16 Aligned_cols=185 Identities=17% Similarity=0.137 Sum_probs=87.8
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccc--------------------cccCCCcceecccccCch-----hHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKY--------------------CSALENLNFISALHLSSC-----TRD 57 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~--------------------l~~l~~L~~L~~~~~~~~-----~~~ 57 (202)
++.++++|..+..+ +|++|++++ +....+|.. ...+++|++|+....... +..
T Consensus 291 ~~~l~~l~~~~~~~-~L~~L~l~~-n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 291 SVTIERVKDFSYNF-GWQHLELVN-CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368 (570)
T ss_dssp SCEECSCCBCCSCC-CCSEEEEES-CBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred CccchhhhhhhccC-CccEEeecc-CcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc
Confidence 45556666666666 666666666 333344431 033444555443322211 233
Q ss_pred HcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCC
Q 037964 58 ILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPM 134 (202)
Q Consensus 58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~ 134 (202)
+..+++|++|++++|. . ..++..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+....+
T Consensus 369 -~~~~~~L~~L~l~~n~--l-~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 369 -DFGTTSLKYLDLSFNG--V-ITMSSNFLGLEQLEHLDFQHSN-----LKQMSEFSVFLS-LRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp -HHTCSCCCEEECCSCS--E-EEEEEEEETCTTCCEEECTTSE-----EESCTTSCTTTT-CTTCCEEECTTSCCEECCT
T ss_pred -ccccCccCEEECCCCc--c-ccccccccccCCCCEEEccCCc-----cccccchhhhhc-CCCCCEEeCcCCcccccch
Confidence 5556666666666654 2 2222235556666666665421 00000 2334 5566666666665555555
Q ss_pred ccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecC
Q 037964 135 PTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 135 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c 200 (202)
..+.++++|++|++++|.+.+..++.....+++|+.|++++|. +..+ +.....+++|++|++++|
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC
Confidence 5555566666666655554422233333444555555555544 3322 222233444444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-16 Score=114.33 Aligned_cols=171 Identities=18% Similarity=0.129 Sum_probs=123.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.++.++++|..+ .++|++|++++|......+..++.+++|++|+....... +..+++.+++|++|++++|. ...
T Consensus 15 ~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~ 90 (208)
T 2o6s_A 15 YSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ--LQS 90 (208)
T ss_dssp CSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred cCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc--CCc
Confidence 456777888655 468999999994444444444788999999986655433 44437899999999999997 444
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
..+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...+...+.++++|++|++++|.+.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQ-----LQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred cCHhHhcCccCCCEEEcCCCc-----CcccCHhHhcc-CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 444557889999999998642 11111 2566 889999999999999887777889999999999988654
Q ss_pred EEEcCCCCCcccEEEeccccCccceeeCCCccc
Q 037964 158 LACCSGGFPCLKFLHLKSMLWLDEWTMGTKATW 190 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 190 (202)
+.+++|++|.+..+.....++...+.++
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3467888888887774456665544443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=118.11 Aligned_cols=164 Identities=21% Similarity=0.140 Sum_probs=128.8
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.++.++.++ .++.++++|++|++++ +....++.. +.+++|++|+....... +.. +..+++|++|++++|+ .
T Consensus 38 L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~--l 112 (290)
T 1p9a_G 38 LSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNR--L 112 (290)
T ss_dssp CTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSC--C
T ss_pred cCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCCCc--C
Confidence 4678888875 5799999999999999 554455543 78899999986665544 555 8899999999999997 5
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
....+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|++|++++|.+..
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 113 TSLPLGALRGLGELQELYLKGNE-----LKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCCCSSTTTTCTTCCEEECTTSC-----CCCCCTTTTTT-CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cccCHHHHcCCCCCCEEECCCCC-----CCccChhhccc-ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 54445778999999999998642 11110 3456 8899999999999999888888999999999999888763
Q ss_pred ceEEEcCCCCCcccEEEecccc
Q 037964 156 RKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
++......++|+.+++++|+
T Consensus 187 --ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 --IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --CCTTTTTTCCCSEEECCSCC
T ss_pred --cChhhcccccCCeEEeCCCC
Confidence 34455567889999999887
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=128.20 Aligned_cols=155 Identities=25% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
++.+..+| ++..+++|++|++++ |....++. +..+++|+.|++..+... ++. ++.+++|+.|++++|. ... +
T Consensus 52 ~n~i~~l~-~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~--l~~-l 124 (605)
T 1m9s_A 52 NSDIKSVQ-GIQYLPNVTKLFLNG-NKLTDIKP-LTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNG--ISD-I 124 (605)
T ss_dssp TCCCCCCT-TGGGCTTCCEEECTT-SCCCCCGG-GGGCTTCCEEECCSSCCCCCTT-STTCTTCCEEECTTSC--CCC-C
T ss_pred CCCCCCCh-HHccCCCCCEEEeeC-CCCCCChh-hccCCCCCEEECcCCCCCCChh-hccCCCCCEEEecCCC--CCC-C
Confidence 33444444 244555555555555 22222222 444455555443333222 333 4555555555555543 111 1
Q ss_pred HHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 82 SKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
..+..+++|+.|+++++. +. .+ .+.. +++|+.|+|++|.+...++ +..+++|+.|++++|.+.+. .
T Consensus 125 -~~l~~l~~L~~L~Ls~N~-----l~-~l~~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l---~ 191 (605)
T 1m9s_A 125 -NGLVHLPQLESLYLGNNK-----IT-DITVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---R 191 (605)
T ss_dssp -GGGGGCTTCSEEECCSSC-----CC-CCGGGGS-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---G
T ss_pred -ccccCCCccCEEECCCCc-----cC-Cchhhcc-cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC---h
Confidence 234445555555554321 00 00 2333 4555555555555544322 44555555555554444321 1
Q ss_pred cCCCCCcccEEEecccc
Q 037964 161 CSGGFPCLKFLHLKSML 177 (202)
Q Consensus 161 ~~~~~~~L~~L~l~~~~ 177 (202)
....+++|+.|++++|+
T Consensus 192 ~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGTTCTTCSEEECCSEE
T ss_pred HHccCCCCCEEEccCCc
Confidence 23344555555555544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-15 Score=114.22 Aligned_cols=157 Identities=24% Similarity=0.190 Sum_probs=124.9
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.++.++.+|. +..+++|++|++++ |....++. ++.+++|+.|+....... ++. ++.+++|++|++++|. ..+
T Consensus 53 l~~~~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~--i~~ 126 (291)
T 1h6t_A 53 ANNSDIKSVQG-IQYLPNVTKLFLNG-NKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG--ISD 126 (291)
T ss_dssp CTTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC--CCC
T ss_pred ccCCCcccChh-HhcCCCCCEEEccC-CccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc--CCC
Confidence 35678888865 89999999999999 55445554 888999999986666555 777 9999999999999997 333
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
+ ..+..+++|+.|+++++. -..+ .+.. +++|+.|++++|.+...++ +..+++|++|++++|.+.+-
T Consensus 127 -~-~~l~~l~~L~~L~l~~n~------l~~~~~l~~-l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-- 193 (291)
T 1h6t_A 127 -I-NGLVHLPQLESLYLGNNK------ITDITVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-- 193 (291)
T ss_dssp -C-GGGGGCTTCCEEECCSSC------CCCCGGGGG-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--
T ss_pred -C-hhhcCCCCCCEEEccCCc------CCcchhhcc-CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--
Confidence 2 568899999999998642 0011 4667 8999999999999988653 88999999999998887652
Q ss_pred EEcCCCCCcccEEEecccc
Q 037964 159 ACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~ 177 (202)
+ ....+++|+.|++++|+
T Consensus 194 ~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEE
T ss_pred h-hhccCCCCCEEECcCCc
Confidence 2 35679999999999987
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=120.70 Aligned_cols=146 Identities=16% Similarity=0.030 Sum_probs=97.7
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccC
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCEL 88 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 88 (202)
+.+++++++|++|++++ +....+| +++.+++|++|+....... . . ++.+++|++|++++|. ..+ ++ ++.+
T Consensus 35 ~~~~~~l~~L~~L~Ls~-n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~--l~~-~~--~~~l 105 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHN-SSITDMT-GIEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNK--LTN-LD--VTPL 105 (457)
T ss_dssp EEEHHHHTTCCEEECCS-SCCCCCT-TGGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSC--CSC-CC--CTTC
T ss_pred ccChhHcCCCCEEEccC-CCcccCh-hhcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCC--Cce-ee--cCCC
Confidence 45688999999999999 4444456 6899999999986655444 3 3 8899999999999997 333 32 8899
Q ss_pred CCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcc
Q 037964 89 RCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCL 168 (202)
Q Consensus 89 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 168 (202)
++|++|+++++. +.+ +.+.. +++|+.|++++|++.+.+ ++++++|++|++++|...+.. ..+.+++|
T Consensus 106 ~~L~~L~L~~N~-----l~~-l~~~~-l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L 172 (457)
T 3bz5_A 106 TKLTYLNCDTNK-----LTK-LDVSQ-NPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQL 172 (457)
T ss_dssp TTCCEEECCSSC-----CSC-CCCTT-CTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTC
T ss_pred CcCCEEECCCCc-----CCe-ecCCC-CCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcC
Confidence 999999998642 111 13555 777777777777776642 455556666666555333221 22334444
Q ss_pred cEEEecccc
Q 037964 169 KFLHLKSML 177 (202)
Q Consensus 169 ~~L~l~~~~ 177 (202)
+.|++++|.
T Consensus 173 ~~L~ls~n~ 181 (457)
T 3bz5_A 173 TTLDCSFNK 181 (457)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 444444443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-16 Score=120.18 Aligned_cols=172 Identities=17% Similarity=0.063 Sum_probs=96.1
Q ss_pred cccccEEEeCceeecc-cccc--ccccCCCcceecccccCch---hHHHc--CcCCccceeeEEeecCchHHH---H-HH
Q 037964 16 MHKLRHLNFGYIKLHA-HPGK--YCSALENLNFISALHLSSC---TRDIL--GRLPNLQSLKIFEDLSHYQSV---L-SK 83 (202)
Q Consensus 16 l~~L~~L~l~~~~~~~-~~p~--~l~~l~~L~~L~~~~~~~~---~~~~l--~~l~~L~~L~l~~~~~~~~~~---~-~~ 83 (202)
...++.+.+.++.... .+.. ....+++|++|+..+.... +.. + +++++|++|++++|. ..+. + ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVS--WATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCC--CSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeeccc--ccchhhhhHHH
Confidence 3457788888732211 1111 1233567888886555432 555 6 889999999999997 3332 1 24
Q ss_pred HhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCC----------------------------CCCCCC
Q 037964 84 SLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNT----------------------------KLKDDP 133 (202)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~----------------------------~~~~~~ 133 (202)
.+..+++|++|+++++.- .+.. .+.. +++|+.|++++| ++...+
T Consensus 140 ~~~~~~~L~~L~Ls~n~l-----~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHS-----PAFSCEQVRA-FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp HTTBCSCCCEEEEECCSS-----CCCCTTSCCC-CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred HhhhccCCCEEEeeCCCc-----chhhHHHhcc-CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 566899999999987420 0000 2233 444455555444 443211
Q ss_pred Cc---cccCCCCcceEEeccCccCCceEEEcCCCC---CcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 134 MP---TLEKLPHLLVLKLKQNSFSRRKLACCSGGF---PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 134 ~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
.. .++.+++|++|++++|.+.+.. +.....+ ++|+.|++++|. ++.++... +++|++|++++|
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~L~~L~Ls~N 282 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAG-LEQVPKGL--PAKLRVLDLSSN 282 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCCSCC--CSCCSCEECCSC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCC-CCchhhhh--cCCCCEEECCCC
Confidence 10 1245566666666666654421 1112222 577777777776 55444332 367777777765
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=108.69 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=110.9
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++++| .+..+++|++|++++ +....+ ..+..+++|++|+....... +.. ++++++|++|++++|. ..
T Consensus 52 ~~n~i~~l~-~l~~l~~L~~L~l~~-n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~--i~ 125 (197)
T 4ezg_A 52 ANINVTDLT-GIEYAHNIKDLTINN-IHATNY-NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSA--HD 125 (197)
T ss_dssp ESSCCSCCT-TGGGCTTCSEEEEES-CCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSB--CB
T ss_pred cCCCccChH-HHhcCCCCCEEEccC-CCCCcc-hhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCc--cC
Confidence 467888899 799999999999999 444444 36888999999986655432 666 8999999999999998 67
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
...+..++.+++|+.|+++++.. .+.+ .+.. +++|+.|++++|++...+ .+..+++|++|++++|.+.+
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~-----i~~~~~l~~-l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGA-----ITDIMPLKT-LPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTB-----CCCCGGGGG-CSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred cHhHHHHhhCCCCCEEEccCCCC-----ccccHhhcC-CCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 77889999999999999986431 1112 4667 899999999999998753 78899999999999887643
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-16 Score=125.40 Aligned_cols=95 Identities=11% Similarity=0.115 Sum_probs=63.4
Q ss_pred CCccccccHHHhccccccEEEeCceeeccc----cccccccCCCcceecccccCc-----h-hH------HHcCcCCccc
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAH----PGKYCSALENLNFISALHLSS-----C-TR------DILGRLPNLQ 66 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~~~~~~~-----~-~~------~~l~~l~~L~ 66 (202)
...+..++..+..+++|++|++++|..... ++..+..+++|++|+..++.. . |. .++.++++|+
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 344566778888888888888888544443 333466778888887544311 1 22 2257788888
Q ss_pred eeeEEeecCchHH----HHHHHhccCCCccEEEeecC
Q 037964 67 SLKIFEDLSHYQS----VLSKSLCELRCLDSLKLVNE 99 (202)
Q Consensus 67 ~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~ 99 (202)
+|++++|. ... .++..+..+++|++|+++++
T Consensus 98 ~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 98 TVRLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp EEECCSCC--CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred EEECCCCc--CCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 88888876 333 57777888888888888764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-15 Score=126.70 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=74.1
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
|..+.++++|++|++++ +....+|..++.+++|++|+....... +..++.++++|++|++++|. ..+..+..+.
T Consensus 366 ~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~ 442 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFN 442 (570)
T ss_dssp EHHHHTCSCCCEEECCS-CSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC--CEECCTTTTT
T ss_pred cccccccCccCEEECCC-CccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc--ccccchhhhh
Confidence 34455555555555555 222223333555555555543332211 11114555555555555554 3334444555
Q ss_pred cCCCccEEEeecCcchhhchh-ccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCC
Q 037964 87 ELRCLDSLKLVNESNMLGILQ-IDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSG 163 (202)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~-~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 163 (202)
.+++|+.|+++++. +. +.+ .+.. +++|+.|++++|++.+..+..++++++|++|++++|.+.+.. +....
T Consensus 443 ~l~~L~~L~l~~n~-----l~~~~~p~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~ 515 (570)
T 2z63_A 443 GLSSLEVLKMAGNS-----FQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP-DGIFD 515 (570)
T ss_dssp TCTTCCEEECTTCE-----EGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTTTT
T ss_pred cCCcCcEEECcCCc-----Cccccchhhhhc-ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC-HHHhh
Confidence 55555555554422 01 111 3344 555555555555555544455555555555555555443321 11233
Q ss_pred CCCcccEEEecccc
Q 037964 164 GFPCLKFLHLKSML 177 (202)
Q Consensus 164 ~~~~L~~L~l~~~~ 177 (202)
.+++|+.|++++|+
T Consensus 516 ~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 516 RLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCcEEEecCCc
Confidence 45555555555554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.5e-15 Score=109.36 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=89.1
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++++|..+. ++|++|++++|......+..+..+++|+.|+....... +.. +.++++|++|++++|. ..
T Consensus 19 ~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~--l~ 93 (220)
T 2v9t_B 19 RGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNK--IT 93 (220)
T ss_dssp TTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSC--CC
T ss_pred CCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCc--CC
Confidence 4566777776554 67888888884334333445777778887775554433 444 7788888888888776 33
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
...+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+..+++|++|++++|.+
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANK-----INCLRVDAFQD-LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCHhHccCCCCCCEEECCCCC-----CCEeCHHHcCC-CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 3222345667777777776532 01110 3445 66777777777777776666677777777777776665
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=122.54 Aligned_cols=177 Identities=21% Similarity=0.158 Sum_probs=137.2
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
.+.+.+++. +..+++|+.|++++ +....+| .++.+++|+.|++...... ... +..+++|+.|++++|. .. .+
T Consensus 30 ~~~i~~~~~-~~~L~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~-~l 102 (605)
T 1m9s_A 30 KKSVTDAVT-QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK--IK-DL 102 (605)
T ss_dssp CSCTTSEEC-HHHHTTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CC-CC
T ss_pred CCCcccccc-hhcCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC--CC-CC
Confidence 344555544 67899999999999 5555565 5888999999986665544 445 8899999999999997 22 23
Q ss_pred HHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 82 SKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
..+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|.+... ..+..+++|+.|++++|.+.+.. +
T Consensus 103 -~~l~~l~~L~~L~Ls~N~-----l~-~l~~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~-~- 170 (605)
T 1m9s_A 103 -SSLKDLKKLKSLSLEHNG-----IS-DINGLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-P- 170 (605)
T ss_dssp -TTSTTCTTCCEEECTTSC-----CC-CCGGGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG-G-
T ss_pred -hhhccCCCCCEEEecCCC-----CC-CCccccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch-h-
Confidence 378899999999998642 01 11 4666 89999999999999875 68889999999999988886532 2
Q ss_pred cCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 161 CSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
...+++|+.|++++|. +..++ ....+++|+.|++++|+
T Consensus 171 -l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEE
T ss_pred -hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCc
Confidence 6789999999999997 66653 35678999999998764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-15 Score=109.29 Aligned_cols=143 Identities=18% Similarity=0.139 Sum_probs=103.9
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.+++++.+|..+. ++|++|++++|......|..+..+++|+.|+....... +.++++.+++|+.|++++|. ...
T Consensus 27 ~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~ 102 (229)
T 3e6j_A 27 RSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ--LTV 102 (229)
T ss_dssp TTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred cCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc--CCc
Confidence 4567788887554 88999999995556556777888888888886655433 43437888999999999886 444
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
..+..+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|++...+...+..+++|+.|++++|.+..
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~-----l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNK-----LT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cChhHhCcchhhCeEeccCCc-----cc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 444556788888888887632 01 11 3456 7888888888888887777778888888888888877653
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-15 Score=123.89 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=98.4
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCc-------------ceecccccCchhHHHcCc-CCccce
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENL-------------NFISALHLSSCTRDILGR-LPNLQS 67 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-------------~~L~~~~~~~~~~~~l~~-l~~L~~ 67 (202)
.++.++++|.+++++++|++|++++|...+.+|.+++.+.+| ++|+..... ..+ +.. .++|++
T Consensus 19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~--l~~-lp~~~~~L~~ 95 (454)
T 1jl5_A 19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG--LSS-LPELPPHLES 95 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC--CSC-CCSCCTTCSE
T ss_pred ccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc--ccc-CCCCcCCCCE
Confidence 567889999999999999999999966678899888888876 444322221 222 222 367899
Q ss_pred eeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEE
Q 037964 68 LKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLK 147 (202)
Q Consensus 68 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 147 (202)
|++++|. ..+ +|. ..++|+.|+++++. +. .+...+++|+.|++++|++.+.+ .++++++|++|+
T Consensus 96 L~l~~n~--l~~-lp~---~~~~L~~L~l~~n~-----l~---~l~~~~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~ 159 (454)
T 1jl5_A 96 LVASCNS--LTE-LPE---LPQSLKSLLVDNNN-----LK---ALSDLPPLLEYLGVSNNQLEKLP--ELQNSSFLKIID 159 (454)
T ss_dssp EECCSSC--CSS-CCC---CCTTCCEEECCSSC-----CS---CCCSCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEE
T ss_pred EEccCCc--CCc-ccc---ccCCCcEEECCCCc-----cC---cccCCCCCCCEEECcCCCCCCCc--ccCCCCCCCEEE
Confidence 9998886 332 443 23678888887532 01 23231367888888888777643 577778888888
Q ss_pred eccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 148 LKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
+++|.+.+ ++ ..+++|++|++++|. +..++ ..+.+++|++|++++|
T Consensus 160 l~~N~l~~--lp---~~~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 160 VDNNSLKK--LP---DLPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCSSCCSC--CC---CCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCcCcc--cC---CCcccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC
Confidence 87776653 12 123466667666665 44443 3445566666665554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=111.10 Aligned_cols=155 Identities=20% Similarity=0.177 Sum_probs=117.4
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
..+.+++++ .+..+++|++|++++ +....+| +++.+++|+.|+..+.... ... ++++++|++|++++|. . ..
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~--l-~~ 99 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDN-SNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR--L-KN 99 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC--C-SC
T ss_pred cCCCccccc-chhhcCcCcEEECcC-CCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc--c-CC
Confidence 456777887 588999999999999 5555666 6888899999986665544 445 8899999999999986 2 22
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLA 159 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 159 (202)
++. +.. ++|+.|+++++. +. .+ .+.. +++|+.|++++|++... ..++.+++|+.|++++|.+.+.
T Consensus 100 l~~-~~~-~~L~~L~L~~N~-----l~-~~~~l~~-l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--- 165 (263)
T 1xeu_A 100 LNG-IPS-ACLSRLFLDNNE-----LR-DTDSLIH-LKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--- 165 (263)
T ss_dssp CTT-CCC-SSCCEEECCSSC-----CS-BSGGGTT-CTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---
T ss_pred cCc-ccc-CcccEEEccCCc-----cC-CChhhcC-cccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---
Confidence 333 223 889999998642 01 11 4566 88999999999998875 4788899999999998887653
Q ss_pred EcCCCCCcccEEEecccc
Q 037964 160 CCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~ 177 (202)
.....+++|+.|++++|.
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 345678899999999887
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-15 Score=121.55 Aligned_cols=88 Identities=19% Similarity=0.057 Sum_probs=49.3
Q ss_pred cccCCCCccEEEeeCCCCC----CCCCccccCCCCcceEEeccCccCCceE---EEcC--CCCCcccEEEeccccCccc-
Q 037964 112 EYQFPQSLTHLSLTNTKLK----DDPMPTLEKLPHLLVLKLKQNSFSRRKL---ACCS--GGFPCLKFLHLKSMLWLDE- 181 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~l~~- 181 (202)
+.. +++|+.|++++|.+. ...+..+..+++|++|++++|.+.+... +... +.+++|+.|++++|. +..
T Consensus 212 l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~ 289 (386)
T 2ca6_A 212 LAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELD 289 (386)
T ss_dssp GGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHH
T ss_pred hhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHH
Confidence 344 666777777777664 2223455666777777777666543211 1111 336777777777776 433
Q ss_pred ----eeeCC-CccccccEEeeecCC
Q 037964 182 ----WTMGT-KATWKLEHLIINPCA 201 (202)
Q Consensus 182 ----~~~~~-~~~~~L~~L~i~~c~ 201 (202)
++... ..+++|++|++++|+
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHhcCCCceEEEccCCc
Confidence 33322 335777777777664
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=122.58 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=103.3
Q ss_pred CccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
-+++++|..+- +++++|++++|......|..+.++++|++|+..+.... ++++|+++++|++|++++|+ ....-
T Consensus 41 ~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~--l~~l~ 116 (635)
T 4g8a_A 41 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSLA 116 (635)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEEC
T ss_pred CCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc--CCCCC
Confidence 35777886432 47899999994444444456899999999987666544 44448999999999999987 44444
Q ss_pred HHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC-CccccCCCCcceEEeccCccCC
Q 037964 82 SKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP-MPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
+..|+++++|++|+++++. +.+-. .++. +++|+.|++++|.+.... +..++.+++|++|++++|.+.+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-----l~~l~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-----LASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-----CCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred HHHhcCCCCCCEEECCCCc-----CCCCChhhhhc-CcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 4578899999999997642 11111 4667 889999999999887644 5667789999999998877653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=106.34 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=97.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++++|..+. ..+++|++++|......|. .++.+++|+.|+....... +..+++++++|++|++++|. ..
T Consensus 19 s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~--l~ 94 (220)
T 2v70_A 19 SNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR--LE 94 (220)
T ss_dssp CSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc--cC
Confidence 4667778887553 3567888888444333333 3677888888876555433 33238888888888888887 55
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
...+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..+..+++|++|++++|.+.
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNR-----ITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSC-----CCCBCTTSSTT-CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCHhHhcCCcCCCEEECCCCc-----CCeECHhHcCC-CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555667788888888887532 11111 3555 778888888888888777777788888888888877764
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-14 Score=114.04 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=99.1
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccc-cccCCCcceeccccc-Cch--hHHHcCcCCccceeeEEeecCc
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKY-CSALENLNFISALHL-SSC--TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~-~~~--~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
.+|+|+.||. ++.++++|++|++++|.....+|.+ +.++++++++..... ... ++++++.+++|++|++++|.
T Consensus 38 s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-- 115 (350)
T 4ay9_X 38 VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-- 115 (350)
T ss_dssp ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC--
T ss_pred cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc--
Confidence 3455666654 3566666666666663333434432 455555554332221 111 22326666666666666665
Q ss_pred hHHHHHHHhccCCCccEEEeecCcchh--h---c-----------hh-ccc-----ccccCCCCccEEEeeC-CCCCCCC
Q 037964 77 YQSVLSKSLCELRCLDSLKLVNESNML--G---I-----------LQ-IDI-----AEYQFPQSLTHLSLTN-TKLKDDP 133 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~--~---~-----------~~-~~~-----~~~~~l~~L~~L~l~~-~~~~~~~ 133 (202)
.....+..+....++..+++....... . + +. +.+ .... ..+++.+++.+ |.+...+
T Consensus 116 l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCC
T ss_pred cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCC
Confidence 222112223333344444443311000 0 0 01 111 1112 34566666653 4556665
Q ss_pred CccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 134 MPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 134 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
..+++++++|+.|++++|.+.. .+.+.|.+|+.|.+.++..++.+|. ...+++|+.+++.+
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~----lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHS----LPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCC----CCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred HHHhccCcccchhhcCCCCcCc----cChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 5667777888888888776642 2335577788888777777776663 45678888877753
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-14 Score=119.92 Aligned_cols=182 Identities=17% Similarity=0.138 Sum_probs=120.7
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
|..+..+.+|+++++.. +.....+..+..+++|+.++....... +..++..+++++.++++.|. .....+..+.
T Consensus 390 ~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~--l~~~~~~~~~ 466 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFN 466 (635)
T ss_dssp CHHHHSCSCCCEEECCS-CSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC--CEECCTTTTT
T ss_pred ccchhhhhhhhhhhccc-cccccccccccccccccchhhhhccccccccccccccccccccccccccc--cccccccccc
Confidence 44555556666666665 333334444556666666653332211 22226777888888888776 5555566777
Q ss_pred cCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCC
Q 037964 87 ELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGG 164 (202)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 164 (202)
.++.++.|+++++... .+.. .+.. +++|+.|++++|++...++..++++++|++|++++|.+.+-. +.....
T Consensus 467 ~~~~L~~L~Ls~N~~~----~~~~~~~~~~-l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~ 540 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQ----ENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKC 540 (635)
T ss_dssp TCTTCCEEECTTCEEG----GGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTT
T ss_pred cchhhhhhhhhhcccc----cccCchhhhh-ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhC
Confidence 7888888888764211 1111 4566 889999999999998888888999999999999988776432 334567
Q ss_pred CCcccEEEeccccCccceee-CCCcc-ccccEEeeecCC
Q 037964 165 FPCLKFLHLKSMLWLDEWTM-GTKAT-WKLEHLIINPCA 201 (202)
Q Consensus 165 ~~~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~L~i~~c~ 201 (202)
+++|+.|++++|. +..++. ....+ ++|+.|+++++|
T Consensus 541 l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 541 LNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8899999999988 555433 33445 579999998765
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=115.50 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=114.3
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccc-cCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCS-ALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.+++++.+|..+. ..+++|++++|......+..+. .+++|+.|+..+.... +.+++.++++|++|++++|. ..
T Consensus 26 ~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~--l~ 101 (361)
T 2xot_A 26 SKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH--LH 101 (361)
T ss_dssp CSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc--CC
Confidence 4677888887554 4588999999444444444455 8899999886665544 33338999999999999997 44
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccc---cCCCCcceEEeccCcc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTL---EKLPHLLVLKLKQNSF 153 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~ 153 (202)
...+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+ ..+++|+.|++++|.+
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~-----i~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNH-----IVVVDRNAFED-MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTT-CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred cCCHHHhCCCcCCCEEECCCCc-----ccEECHHHhCC-cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 4445578889999999998642 11110 4566 8899999999999988776666 5688999999998877
Q ss_pred CCceEEEcCCCCCc--ccEEEecccc
Q 037964 154 SRRKLACCSGGFPC--LKFLHLKSML 177 (202)
Q Consensus 154 ~~~~~~~~~~~~~~--L~~L~l~~~~ 177 (202)
..-. ......++. ++.|++.+|+
T Consensus 176 ~~l~-~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 176 KKLP-LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCC-HHHHHHSCHHHHTTEECCSSC
T ss_pred CccC-HHHhhhccHhhcceEEecCCC
Confidence 5421 111223454 4778888876
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.6e-14 Score=103.28 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=113.9
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+.++.++ +....+|..+. ++++.|+....... +..++..+++|++|++++|. .....+..+..+++|+.|+++
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEECC
Confidence 5788888 66677887664 68888886655544 33338999999999999997 666668889999999999998
Q ss_pred cCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEec
Q 037964 98 NESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLK 174 (202)
Q Consensus 98 ~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 174 (202)
++. +. .+ .+.. +++|+.|++++|++...++..+.++++|++|++++|.+.+.. +.....+++|+.|+++
T Consensus 89 ~N~-----l~-~l~~~~f~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 89 GNK-----IT-ELPKSLFEG-LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLA 160 (220)
T ss_dssp SSC-----CC-CCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECC
T ss_pred CCc-----CC-ccCHhHccC-CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeC
Confidence 642 11 11 3566 899999999999999988889999999999999988886532 2235568899999999
Q ss_pred ccc
Q 037964 175 SML 177 (202)
Q Consensus 175 ~~~ 177 (202)
+|+
T Consensus 161 ~N~ 163 (220)
T 2v9t_B 161 QNP 163 (220)
T ss_dssp SSC
T ss_pred CCC
Confidence 987
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.2e-16 Score=129.77 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=116.4
Q ss_pred CCCccccccHHHhccccccEEEeCcee-------------eccccccccccCCCcceecccccCc--hh-------HHHc
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIK-------------LHAHPGKYCSALENLNFISALHLSS--CT-------RDIL 59 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~-------------~~~~~p~~l~~l~~L~~L~~~~~~~--~~-------~~~l 59 (202)
+++.++.||.+++++++|+.|++++|. .....|..++.+++|+.|+...... .. .. +
T Consensus 357 s~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~-i 435 (567)
T 1dce_A 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS-V 435 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-H
T ss_pred ChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhccc-c
Confidence 456677888888888888888887732 2344555567777777765211110 00 01 1
Q ss_pred CcC--CccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCc
Q 037964 60 GRL--PNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMP 135 (202)
Q Consensus 60 ~~l--~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~ 135 (202)
..+ ..|+.|++++|. ...+|. ++.+++|+.|+++++. +. .+ .+.. +++|+.|++++|.+.+.+
T Consensus 436 ~~l~~~~L~~L~Ls~n~---l~~lp~-~~~l~~L~~L~Ls~N~-----l~-~lp~~~~~-l~~L~~L~Ls~N~l~~lp-- 502 (567)
T 1dce_A 436 LKMEYADVRVLHLAHKD---LTVLCH-LEQLLLVTHLDLSHNR-----LR-ALPPALAA-LRCLEVLQASDNALENVD-- 502 (567)
T ss_dssp HHHHHTTCSEEECTTSC---CSSCCC-GGGGTTCCEEECCSSC-----CC-CCCGGGGG-CTTCCEEECCSSCCCCCG--
T ss_pred cccCccCceEEEecCCC---CCCCcC-ccccccCcEeecCccc-----cc-ccchhhhc-CCCCCEEECCCCCCCCCc--
Confidence 111 257888888885 333565 8888888888887642 11 11 4566 788888888888888743
Q ss_pred cccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC----CccccccEEe
Q 037964 136 TLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT----KATWKLEHLI 196 (202)
Q Consensus 136 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~ 196 (202)
.++++++|+.|++++|.+.+...+...+.+++|+.|++++|+ +...+... ..+|+|+.|+
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 778888888888888777653213345668888888888887 55444332 2367787775
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-15 Score=116.71 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=38.0
Q ss_pred CccEEEeeCCCCCCCCCccc----cCC-CCcceEEeccCccCCceEE---EcCCC-CCcccEEEeccccCccceee----
Q 037964 118 SLTHLSLTNTKLKDDPMPTL----EKL-PHLLVLKLKQNSFSRRKLA---CCSGG-FPCLKFLHLKSMLWLDEWTM---- 184 (202)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~~~---~~~~~-~~~L~~L~l~~~~~l~~~~~---- 184 (202)
+|+.|++++|++....+..+ ... ++|++|++++|.+.+.... ..... .++|+.|++++|. +.....
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 246 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLK 246 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHH
Confidence 56666666665554443322 233 3666666665555432110 00111 2356666666655 333211
Q ss_pred -CCCccccccEEeeecC
Q 037964 185 -GTKATWKLEHLIINPC 200 (202)
Q Consensus 185 -~~~~~~~L~~L~i~~c 200 (202)
....+++|++|++++|
T Consensus 247 ~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HTTTTTTTCSEEEEEHH
T ss_pred HHHhcCCCccEEEeccC
Confidence 1133455666665554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-14 Score=114.78 Aligned_cols=192 Identities=17% Similarity=0.167 Sum_probs=128.0
Q ss_pred CCCCccccccHHH-hccccccEEEeCceeeccccc----cccccCC-CcceecccccCch---hHHHcCcC-----Cccc
Q 037964 1 IPLSFIDHTPEDI-WKMHKLRHLNFGYIKLHAHPG----KYCSALE-NLNFISALHLSSC---TRDILGRL-----PNLQ 66 (202)
Q Consensus 1 ~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~~p----~~l~~l~-~L~~L~~~~~~~~---~~~~l~~l-----~~L~ 66 (202)
+..+.++...+++ ...++|++|++++|......+ ..+..++ +|++|+...+... +.. +..+ ++|+
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~ 83 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVT 83 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCC
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCcc
Confidence 4567777655555 444569999999954444444 5577788 8999986655432 333 4443 9999
Q ss_pred eeeEEeecCchHH----HHHHHhccC-CCccEEEeecCcchhhchhccc------ccccCCCCccEEEeeCCCCCCCCCc
Q 037964 67 SLKIFEDLSHYQS----VLSKSLCEL-RCLDSLKLVNESNMLGILQIDI------AEYQFPQSLTHLSLTNTKLKDDPMP 135 (202)
Q Consensus 67 ~L~l~~~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~ 135 (202)
+|++++|. ..+ .+...+... ++|+.|+++++. +.+.. .+..+.++|+.|++++|.+......
T Consensus 84 ~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 84 SLNLSGNF--LSYKSSDELVKTLAAIPFTITVLDLGWND-----FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp EEECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCSSC-----GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred EEECcCCc--CChHHHHHHHHHHHhCCCCccEEECcCCc-----CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 99999997 443 344456666 899999998743 01100 2333136999999999999876544
Q ss_pred cc----cCCC-CcceEEeccCccCCceEE---EcCCCC-CcccEEEeccccCccc-----eeeCCCc-cccccEEeeecC
Q 037964 136 TL----EKLP-HLLVLKLKQNSFSRRKLA---CCSGGF-PCLKFLHLKSMLWLDE-----WTMGTKA-TWKLEHLIINPC 200 (202)
Q Consensus 136 ~l----~~l~-~L~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~l~~-----~~~~~~~-~~~L~~L~i~~c 200 (202)
.+ ...+ +|++|++++|.+.+.... .....+ ++|+.|++++|. +.. ++..... .++|++|++++|
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 43 4555 999999998887653311 112234 599999999998 654 2222222 358999999987
Q ss_pred C
Q 037964 201 A 201 (202)
Q Consensus 201 ~ 201 (202)
.
T Consensus 236 ~ 236 (362)
T 3goz_A 236 C 236 (362)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=114.94 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=108.4
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.+++++.+|..+. ++|++|++++ |....+| ..+++|+.|+...+... ++. +.+ +|++|++++|. ..+
T Consensus 67 s~n~L~~lp~~l~--~~L~~L~Ls~-N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~--l~~- 134 (571)
T 3cvr_A 67 NRLNLSSLPDNLP--PQITVLEITQ-NALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ--LTM- 134 (571)
T ss_dssp CSSCCSCCCSCCC--TTCSEEECCS-SCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC--CSC-
T ss_pred CCCCCCccCHhHc--CCCCEEECcC-CCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc--CCC-
Confidence 4566666776552 6677777777 4433565 33566777664444333 222 433 77778777775 222
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
+|. .+++|+.|+++++. +.+ + ... +++|+.|++++|++...+. +. ++|+.|++++|.+.. ++.
T Consensus 135 lp~---~l~~L~~L~Ls~N~-----l~~-l-p~~-l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~--lp~ 197 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQ-----LTM-L-PEL-PTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES--LPA 197 (571)
T ss_dssp CCC---CCTTCCEEECCSSC-----CSC-C-CCC-CTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS--CCC
T ss_pred CCC---cCccccEEeCCCCc-----cCc-C-CCc-CCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc--hhh
Confidence 444 56778888887532 111 1 113 6789999999998887544 54 889999999887753 232
Q ss_pred cCCCCCcc-------cEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 161 CSGGFPCL-------KFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 161 ~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.. ++| +.|++++|. +..++.....+++|+.|++++++
T Consensus 198 -~~--~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 198 -VP--VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred -HH--HhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence 21 266 999999987 77787777779999999999875
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=101.69 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=107.5
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+.++.++ +....+|..+ .++++.|+....... +.++++++++|++|++++|. .....+..+..+++|++|+++
T Consensus 10 ~~v~c~~-~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecC-CCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cCccChhhcCCCCCcCEEECC
Confidence 4666776 5566677654 468888886555433 44438899999999999997 444444557889999999998
Q ss_pred cCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecc
Q 037964 98 NESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175 (202)
Q Consensus 98 ~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (202)
++. +.+.. .+.. +++|+.|++++|++...+...+.++++|++|++++|.+.+.. +.....+++|+.|++++
T Consensus 85 ~n~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 85 TNQ-----LQSLPNGVFDK-LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp SSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred CCc-----CCccCHhHhcC-ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecC
Confidence 642 11111 2566 889999999999999887777899999999999988776421 22246689999999999
Q ss_pred cc
Q 037964 176 ML 177 (202)
Q Consensus 176 ~~ 177 (202)
|+
T Consensus 158 N~ 159 (208)
T 2o6s_A 158 NP 159 (208)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=101.49 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=112.1
Q ss_pred ccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEE
Q 037964 19 LRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLK 95 (202)
Q Consensus 19 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (202)
-+++++++ +....+|..+. ..++.|+....... +.++++++++|++|++++|. .....+..+..+++|+.|+
T Consensus 13 ~~~l~~s~-n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSN-QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEE
T ss_pred CCEeEeCC-CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEE
Confidence 35899999 66667887664 35577775554433 33337899999999999997 5555556899999999999
Q ss_pred eecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEe
Q 037964 96 LVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHL 173 (202)
Q Consensus 96 l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 173 (202)
++++. +.+.. .+.. +++|+.|++++|++...++..+.++++|++|++++|.+.+.. +.....+++|+.|++
T Consensus 88 Ls~N~-----l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 88 LTSNR-----LENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNL 160 (220)
T ss_dssp CCSSC-----CCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred CCCCc-----cCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEe
Confidence 98643 11111 3667 899999999999999988889999999999999988886532 334567899999999
Q ss_pred cccc
Q 037964 174 KSML 177 (202)
Q Consensus 174 ~~~~ 177 (202)
++|+
T Consensus 161 ~~N~ 164 (220)
T 2v70_A 161 LANP 164 (220)
T ss_dssp CSCC
T ss_pred cCcC
Confidence 9987
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=107.11 Aligned_cols=189 Identities=15% Similarity=0.102 Sum_probs=123.9
Q ss_pred CCccccccHHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCc--h-hHHHcCcCCcccee-eEEeecCch
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSS--C-TRDILGRLPNLQSL-KIFEDLSHY 77 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L-~l~~~~~~~ 77 (202)
++++++||..+ .+++++|++++ |....+|. .+.++++|++|+..+... . +.+++.++++++.+ .+..|+ .
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--l 92 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--L 92 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--C
T ss_pred CCCCCccCcCc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--c
Confidence 56789999876 36899999999 66666765 489999999999766653 2 44558999998864 445565 4
Q ss_pred HHHHHHHhccCCCccEEEeecCc--chhh--c----------hhc--cc------ccccCCCCccEEEeeCCCCCCCCCc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNES--NMLG--I----------LQI--DI------AEYQFPQSLTHLSLTNTKLKDDPMP 135 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~--~~~~--~----------~~~--~~------~~~~~l~~L~~L~l~~~~~~~~~~~ 135 (202)
....+..+..+++|++|+++++. ...+ + +.+ .+ .+......++.|++++|++...+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh
Confidence 44456788999999999998731 0000 0 111 11 2222123577788888887765544
Q ss_pred cccCCCCcceEEeccCccCCceEEE-cCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 136 TLEKLPHLLVLKLKQNSFSRRKLAC-CSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 136 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+ ...+|+.+++.+++..... +. ....+++|+.|++++|. ++.++. +.+..|++|.+.+|.
T Consensus 173 ~f-~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 173 AF-NGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTY 234 (350)
T ss_dssp SS-TTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCT
T ss_pred hc-cccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCC
Confidence 43 3457888888654433222 22 23567888889888887 766654 346777777776654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-13 Score=114.46 Aligned_cols=75 Identities=15% Similarity=0.044 Sum_probs=49.4
Q ss_pred CCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEe
Q 037964 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLI 196 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 196 (202)
++|+.|++++|++...+ ..+++|+.|++++|.+.. ++. .+++|+.|++++|. +..++.....+++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEE
Confidence 45666666666555432 344667777776665542 221 56778888888886 666766667788888888
Q ss_pred eecCC
Q 037964 197 INPCA 201 (202)
Q Consensus 197 i~~c~ 201 (202)
+++|+
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 88775
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=105.19 Aligned_cols=155 Identities=20% Similarity=0.223 Sum_probs=79.8
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCchhHHHcCcC-CccceeeEEeecCchHHHHHHHhccCCCccEEE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRL-PNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLK 95 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (202)
++|++|++++ +....+|.. +++|+.|+..... ..+ +..+ ++|++|++++|. .. .+| .++.+++|++|+
T Consensus 91 ~~L~~L~l~~-n~l~~lp~~---~~~L~~L~l~~n~--l~~-l~~~~~~L~~L~L~~n~--l~-~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASC-NSLTELPEL---PQSLKSLLVDNNN--LKA-LSDLPPLLEYLGVSNNQ--LE-KLP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCS-SCCSSCCCC---CTTCCEEECCSSC--CSC-CCSCCTTCCEEECCSSC--CS-SCC-CCTTCTTCCEEE
T ss_pred CCCCEEEccC-CcCCccccc---cCCCcEEECCCCc--cCc-ccCCCCCCCEEECcCCC--CC-CCc-ccCCCCCCCEEE
Confidence 4555566655 332224432 2455555432221 222 3333 578888888876 33 355 578888888888
Q ss_pred eecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecc
Q 037964 96 LVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175 (202)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (202)
++++. +. .+...+.+|+.|++++|.+...+ .++++++|++|++++|.+.+ ++ ...++|+.|++++
T Consensus 160 l~~N~-----l~---~lp~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 160 VDNNS-----LK---KLPDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK--LP---DLPLSLESIVAGN 224 (454)
T ss_dssp CCSSC-----CS---CCCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS--CC---CCCTTCCEEECCS
T ss_pred CCCCc-----Cc---ccCCCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc--CC---CCcCcccEEECcC
Confidence 87532 01 11111456777777777666632 46666777777776665543 11 1123455555555
Q ss_pred ccCccceeeCCCccccccEEeeec
Q 037964 176 MLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 176 ~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
|. +..++ ..+.+++|++|++++
T Consensus 225 n~-l~~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 225 NI-LEELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp SC-CSSCC-CCTTCTTCCEEECCS
T ss_pred Cc-CCccc-ccCCCCCCCEEECCC
Confidence 43 33333 123344444444443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-13 Score=97.34 Aligned_cols=131 Identities=20% Similarity=0.084 Sum_probs=78.5
Q ss_pred CCccceeeEEeecCchH-HHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCC
Q 037964 62 LPNLQSLKIFEDLSHYQ-SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKL 140 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (202)
.++|+.|++++|. .. +.+|..+..+++|+.|+++++. +.+.-.+.. +++|+.|++++|.+....+..+..+
T Consensus 23 ~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVG-----LISVSNLPK-LPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSC-----CCCCSSCCC-CSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCC-----CCChhhhcc-CCCCCEEECcCCcCchHHHHHHhhC
Confidence 3567777777665 32 3455556666777777776532 000003455 6777777777777776545555567
Q ss_pred CCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee----CCCccccccEEeeecCC
Q 037964 141 PHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM----GTKATWKLEHLIINPCA 201 (202)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~L~i~~c~ 201 (202)
++|++|++++|.+.+.........+++|+.|++++|. +..++. ....+|+|++|++.+|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 7777777777766542111234557777777777776 544433 33456777777777664
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=99.42 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=108.6
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.++.++.+| ++..+++|++|++++ |....++. ++.+++|+.|+....... .+. +.. ++|+.|++++|. ..+
T Consensus 48 l~~n~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~L~~N~--l~~ 120 (263)
T 1xeu_A 48 GDNSNIQSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLFLDNNE--LRD 120 (263)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEECCSSC--CSB
T ss_pred CcCCCcccch-HHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCCCccCCcCc-ccc-CcccEEEccCCc--cCC
Confidence 4678899998 799999999999999 55555555 888999999986665544 444 545 999999999997 332
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCc
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR 156 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 156 (202)
+ ..++.+++|+.|+++++. +. .+ .+.. +++|+.|++++|++... ..+..+++|+.|++++|.+...
T Consensus 121 -~-~~l~~l~~L~~L~Ls~N~-----i~-~~~~l~~-l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 121 -T-DSLIHLKNLEILSIRNNK-----LK-SIVMLGF-LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -S-GGGTTCTTCCEEECTTSC-----CC-BCGGGGG-CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -C-hhhcCcccccEEECCCCc-----CC-CChHHcc-CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3 368999999999998642 01 11 4667 89999999999999876 6788999999999998887553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-13 Score=108.13 Aligned_cols=144 Identities=18% Similarity=0.228 Sum_probs=112.3
Q ss_pred CCCCccccccHH-Hh-ccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCc
Q 037964 1 IPLSFIDHTPED-IW-KMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 1 ~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
+++++++.+|.. +. ++++|++|++++|......+..+..+++|+.|+....... +..++..+++|+.|++++|.
T Consensus 46 Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-- 123 (361)
T 2xot_A 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-- 123 (361)
T ss_dssp CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--
T ss_pred CCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc--
Confidence 467889999876 44 8999999999994444444556899999999986665544 44338999999999999998
Q ss_pred hHHHHHHHhccCCCccEEEeecCcchhhchhccc---cc---ccCCCCccEEEeeCCCCCCCCCccccCCCC--cceEEe
Q 037964 77 YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AE---YQFPQSLTHLSLTNTKLKDDPMPTLEKLPH--LLVLKL 148 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l 148 (202)
.....+..+..+++|+.|+++++. +. .+ .+ .. +++|+.|++++|++...+...+..++. ++.|++
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~-----l~-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQ-----IS-RFPVELIKDGNK-LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-----CC-SCCGGGTC-----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred ccEECHHHhCCcccCCEEECCCCc-----CC-eeCHHHhcCccc-CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence 555567889999999999998642 01 11 12 45 899999999999999988788888887 489999
Q ss_pred ccCcc
Q 037964 149 KQNSF 153 (202)
Q Consensus 149 ~~~~~ 153 (202)
++|.+
T Consensus 197 ~~N~~ 201 (361)
T 2xot_A 197 HNNPL 201 (361)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 98775
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-13 Score=99.05 Aligned_cols=146 Identities=18% Similarity=0.086 Sum_probs=107.3
Q ss_pred cccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEE
Q 037964 18 KLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSL 94 (202)
Q Consensus 18 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 94 (202)
.-+.++.++ +....+|.++. ++|+.|+....... +.. ++++++|++|++++|. .....+..+..+++|+.|
T Consensus 20 s~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~--l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp ETTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEE
T ss_pred eCCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCC--CCCcChhhcccCCCcCEE
Confidence 356788888 66778887664 88898886655433 555 8999999999999997 433333557889999999
Q ss_pred EeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEE
Q 037964 95 KLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLH 172 (202)
Q Consensus 95 ~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 172 (202)
+++++. +.+.. .+.. +++|+.|++++|++... +..+..+++|++|++++|.+..-. +.....+++|+.|+
T Consensus 94 ~Ls~N~-----l~~l~~~~~~~-l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 94 DLGTNQ-----LTVLPSAVFDR-LVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAY 165 (229)
T ss_dssp ECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred ECCCCc-----CCccChhHhCc-chhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEE
Confidence 998642 11111 3466 88999999999998865 466788999999999988776421 12345688999999
Q ss_pred ecccc
Q 037964 173 LKSML 177 (202)
Q Consensus 173 l~~~~ 177 (202)
+.+|+
T Consensus 166 l~~N~ 170 (229)
T 3e6j_A 166 LFGNP 170 (229)
T ss_dssp CTTSC
T ss_pred eeCCC
Confidence 99987
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-14 Score=114.22 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=45.6
Q ss_pred CCccEEEeeCCCCCCCC----CccccCCCCcceEEeccCccCCceE----EEcCCCCCcccEEEeccccCccc-----ee
Q 037964 117 QSLTHLSLTNTKLKDDP----MPTLEKLPHLLVLKLKQNSFSRRKL----ACCSGGFPCLKFLHLKSMLWLDE-----WT 183 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~~-----~~ 183 (202)
++|+.|++++|.+.... +..+..+++|++|++++|.+.+... +.....+++|+.|++++|. +.. ++
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~ 277 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLC 277 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHH
Confidence 46666666666655532 3344456667777776665433211 1112246677777777765 443 22
Q ss_pred eCCCccccccEEeeecCC
Q 037964 184 MGTKATWKLEHLIINPCA 201 (202)
Q Consensus 184 ~~~~~~~~L~~L~i~~c~ 201 (202)
.....+++|++|++++|.
T Consensus 278 ~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHCTTCCEEECTTCC
T ss_pred HHHhhCCCcceEECCCCC
Confidence 222346677777777653
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-13 Score=93.43 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=91.0
Q ss_pred ccccccEEEeCceeec-cccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 15 KMHKLRHLNFGYIKLH-AHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 15 ~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
..++|++|++++|... ..+|..++.+++|+.|+....... ... ++++++|++|++++|. ..+.+|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNR--VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTT-CCCCTTCCEEECCSSC--CCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchh-hhcCCCCCEEECCCCc--ccchHHHHhhhCCCCC
Confidence 4578999999995554 478888889999999986655444 645 8899999999999997 5555777777888888
Q ss_pred EEEeecCcchhhchhcc--c-ccccCCCCccEEEeeCCCCCCCCC---ccccCCCCcceEEec
Q 037964 93 SLKLVNESNMLGILQID--I-AEYQFPQSLTHLSLTNTKLKDDPM---PTLEKLPHLLVLKLK 149 (202)
Q Consensus 93 ~L~l~~~~~~~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 149 (202)
.|+++++. +.+. . .+.. +++|+.|++++|++...+. ..+..+++|++|+++
T Consensus 92 ~L~ls~N~-----i~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNK-----IKDLSTIEPLKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSC-----CCSHHHHGGGGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCc-----CCChHHHHHHhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88887632 0110 0 3455 6777777777777776554 456677777777664
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-13 Score=94.54 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=53.1
Q ss_pred ccccccEEEeCceeec-cccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 15 KMHKLRHLNFGYIKLH-AHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 15 ~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
..++|++|++++|... ..+|..+..+++|+.|+...+... ... ++.+++|++|++++|. ....+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENR--IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSS-CCCCSSCCEEEEESCC--CCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhh-hccCCCCCEEECcCCc--CchHHHHHHhhCCCCC
Confidence 4578999999995443 477777777888888875555433 544 7778888888888876 3333455455555555
Q ss_pred EEEeec
Q 037964 93 SLKLVN 98 (202)
Q Consensus 93 ~L~l~~ 98 (202)
.|++++
T Consensus 99 ~L~Ls~ 104 (168)
T 2ell_A 99 HLNLSG 104 (168)
T ss_dssp EEECBS
T ss_pred EEeccC
Confidence 555543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-14 Score=115.29 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=46.3
Q ss_pred HhccccccEEEeCceeecc----ccccccccCCCcceecccccCch---hHHHcCcCC----ccceeeEEeecCch--HH
Q 037964 13 IWKMHKLRHLNFGYIKLHA----HPGKYCSALENLNFISALHLSSC---TRDILGRLP----NLQSLKIFEDLSHY--QS 79 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~----~L~~L~l~~~~~~~--~~ 79 (202)
+..+++|++|++++|.... .++..+..+++|++|+....... +......++ +|++|++++|.... ..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 5666777777777633221 33444555666666664443322 222122233 57777776665111 13
Q ss_pred HHHHHhccCCCccEEEeec
Q 037964 80 VLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~ 98 (202)
.++..+..+++|+.|++++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp HHHHHTTSCTTCCEEECCS
T ss_pred HHHHHHccCCceeEEECCC
Confidence 5666666677777777665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-14 Score=120.26 Aligned_cols=171 Identities=17% Similarity=0.147 Sum_probs=128.7
Q ss_pred hccccccEEEeCceeeccccccccccCCCcceeccccc---------------Cch-hHHHcCcCCccceee-EEeecCc
Q 037964 14 WKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHL---------------SSC-TRDILGRLPNLQSLK-IFEDLSH 76 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~---------------~~~-~~~~l~~l~~L~~L~-l~~~~~~ 76 (202)
+..++|+.|++++ +....+|.+++.+++|+.|+..+. .+. +.. ++++++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~-- 421 (567)
T 1dce_A 346 ATDEQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAY-- 421 (567)
T ss_dssp STTTTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHH--
T ss_pred ccCccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhcc--
Confidence 5688999999999 676789999999999998873221 111 444 88899999988 55553
Q ss_pred hHHHHHH------HhccC--CCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEE
Q 037964 77 YQSVLSK------SLCEL--RCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLK 147 (202)
Q Consensus 77 ~~~~~~~------~l~~l--~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 147 (202)
...++. .+..+ ..|+.|+++++. +.+ + .+.. +++|+.|++++|.+... +..++++++|+.|+
T Consensus 422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-----l~~-lp~~~~-l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~ 492 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-----LTV-LCHLEQ-LLLVTHLDLSHNRLRAL-PPALAALRCLEVLQ 492 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-----CSS-CCCGGG-GTTCCEEECCSSCCCCC-CGGGGGCTTCCEEE
T ss_pred -cchhhhhhhhcccccccCccCceEEEecCCC-----CCC-CcCccc-cccCcEeecCccccccc-chhhhcCCCCCEEE
Confidence 222222 12221 368899998642 111 2 4566 88999999999999965 57899999999999
Q ss_pred eccCccCCceEEEcCCCCCcccEEEeccccCccce--eeCCCccccccEEeeecCC
Q 037964 148 LKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW--TMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~i~~c~ 201 (202)
+++|.+.+ ++ ..+.+++|+.|++++|. +..+ +...+.+++|+.|++++++
T Consensus 493 Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 493 ASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 99998875 45 67789999999999998 6666 5667889999999999874
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-12 Score=108.76 Aligned_cols=193 Identities=17% Similarity=0.100 Sum_probs=93.7
Q ss_pred ccccHHHhccccccEEEeCceeecc-ccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEe----------e
Q 037964 7 DHTPEDIWKMHKLRHLNFGYIKLHA-HPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFE----------D 73 (202)
Q Consensus 7 ~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~----------~ 73 (202)
..+|..+..+++|++|++++|.... .++..+..+++|++|+..+.-.. +......+++|++|++.. +
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 4456666677778888887743221 12222456667776664321111 333234566666666662 2
Q ss_pred cCchHHHHHHHhccCCCccEEEeecCc---chhh-c-----------hh-----ccc-----------ccccCCCCccEE
Q 037964 74 LSHYQSVLSKSLCELRCLDSLKLVNES---NMLG-I-----------LQ-----IDI-----------AEYQFPQSLTHL 122 (202)
Q Consensus 74 ~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~-~-----------~~-----~~~-----------~~~~~l~~L~~L 122 (202)
.......+......+++|++|++..+. ..+. + +. +.+ .+.. +++|+.|
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L 441 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRF 441 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEE
Confidence 111222333334445566666553211 0000 0 00 000 1223 4455555
Q ss_pred EeeCCC--CCCCCCcccc-CCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccc--eeeCCCccccccEEee
Q 037964 123 SLTNTK--LKDDPMPTLE-KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDE--WTMGTKATWKLEHLII 197 (202)
Q Consensus 123 ~l~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i 197 (202)
++++|. +....+..++ .+++|++|++++|.+.+..++.....+++|+.|++++|. +.. ++.....+++|++|++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 554432 3322222333 356666777766655443333334556777777777777 432 1222235677888888
Q ss_pred ecCC
Q 037964 198 NPCA 201 (202)
Q Consensus 198 ~~c~ 201 (202)
++|.
T Consensus 521 s~n~ 524 (592)
T 3ogk_B 521 QGYR 524 (592)
T ss_dssp ESCB
T ss_pred cCCc
Confidence 7774
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-12 Score=107.06 Aligned_cols=64 Identities=14% Similarity=0.006 Sum_probs=34.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeec
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 74 (202)
.+++++.+|..+. ++|++|++++ |....+|. .+++|++|+...+... ++. .+++|++|++++|.
T Consensus 48 s~n~L~~lp~~l~--~~L~~L~L~~-N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 48 GESGLTTLPDCLP--AHITTLVIPD-NNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CSSCCSCCCSCCC--TTCSEEEECS-CCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred cCCCcCccChhhC--CCCcEEEecC-CCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 4566666766554 6777777777 34345554 3556666654433322 111 34556666665554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-13 Score=95.27 Aligned_cols=130 Identities=18% Similarity=0.061 Sum_probs=94.4
Q ss_pred cCCccceeeEEeecCchH-HHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccC
Q 037964 61 RLPNLQSLKIFEDLSHYQ-SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEK 139 (202)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (202)
..++|+.|++++|. .. +.+|..+..+++|+.|+++++. +.+.-.+.. +++|+.|++++|.+....+..+++
T Consensus 15 ~~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVG-----LTSIANLPK-LNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp CGGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTSC-----CCCCTTCCC-CTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CCccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCCC-----CCCchhhhc-CCCCCEEECCCCcccchHHHHhhh
Confidence 34678888888886 43 4667777888888888887532 010004566 889999999999998866667778
Q ss_pred CCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee----CCCccccccEEeeec
Q 037964 140 LPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM----GTKATWKLEHLIINP 199 (202)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~L~i~~ 199 (202)
+++|++|++++|.+.+...+.....+++|+.|++++|. +..++. ....+++|+.|++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999998887652212345678999999999997 655543 345688999988763
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-12 Score=107.86 Aligned_cols=86 Identities=9% Similarity=0.112 Sum_probs=40.3
Q ss_pred CCCccEEEeeCCCCCCCCCccccC-CCCcceEEec----cCccCCc----eEEEcCCCCCcccEEEeccccC-ccce--e
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEK-LPHLLVLKLK----QNSFSRR----KLACCSGGFPCLKFLHLKSMLW-LDEW--T 183 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~----~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~-l~~~--~ 183 (202)
+++|+.|++..+.+....+..++. +++|++|+++ .+.+.+. .++....++++|+.|+++.|.. +... .
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 455566666555555443444442 5666666664 2233221 1111122356666666655431 1110 0
Q ss_pred eCCCccccccEEeeecCC
Q 037964 184 MGTKATWKLEHLIINPCA 201 (202)
Q Consensus 184 ~~~~~~~~L~~L~i~~c~ 201 (202)
.-...+++|++|++++|.
T Consensus 457 ~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHSCTTCCEEEECSCC
T ss_pred HHHHhCccceEeeccCCC
Confidence 011236677777777663
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-12 Score=92.65 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=74.3
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEe
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKL 96 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (202)
+++++++ +....+|..+.. ++++|+....... +..+++.+++|++|++++|. ..+..|..++.+++|+.|++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCC-CCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC--CCCcCHhHcCCcccCCEEEC
Confidence 4555555 344455544432 5555543333222 21125566666666666665 44444556666666666666
Q ss_pred ecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 97 VNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
+++. +.+.. .+.. +++|+.|++++|++....+..+..+++|++|++++|.+..
T Consensus 86 s~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENK-----IKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCC-----CCEECSSSSTT-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCc-----CCccCHHHhcC-CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5422 11111 3556 7888888888888888777788888888888888887754
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-13 Score=116.60 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=47.4
Q ss_pred ccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--c
Q 037964 36 YCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--A 111 (202)
Q Consensus 36 ~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~ 111 (202)
.+..+.+|+.|++..+... +.. +.++++|++|+|++|. .. .+|..++++++|+.|+++++. +. .+ .
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~--l~-~lp~~~~~l~~L~~L~Ls~N~-----l~-~lp~~ 288 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNS--LT-ELPAEIKNLSNLRVLDLSHNR-----LT-SLPAE 288 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSC--CS-CCCGGGGGGTTCCEEECTTSC-----CS-SCCSS
T ss_pred hhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCc--Cc-ccChhhhCCCCCCEEeCcCCc-----CC-ccChh
Confidence 3444445555443333222 333 4445555555555553 22 444455555555555554321 00 11 2
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
+.. +++|+.|+|++|.+... +..++++++|+.|++++|.+.
T Consensus 289 ~~~-l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 289 LGS-CFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGG-GTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCC
T ss_pred hcC-CCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccC
Confidence 334 45555555555555433 233555555555555555543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-12 Score=107.90 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCccEEEeeCCCCCCCCCccccC-CCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCcccee--eCCCccccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEK-LPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWT--MGTKATWKL 192 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L 192 (202)
+++|+.|++++ .+....+..++. +++|++|++++|.+.+..+......+++|+.|++++|.. .... .....+++|
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETM 508 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCC
Confidence 56666676655 444433444443 777888888877765443322224578899999999884 3321 123457899
Q ss_pred cEEeeecCC
Q 037964 193 EHLIINPCA 201 (202)
Q Consensus 193 ~~L~i~~c~ 201 (202)
++|++++|+
T Consensus 509 ~~L~l~~~~ 517 (594)
T 2p1m_B 509 RSLWMSSCS 517 (594)
T ss_dssp SEEEEESSC
T ss_pred CEEeeeCCC
Confidence 999999986
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=87.88 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=69.4
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+++++++ +....+|.++. +++++|+....... +.. +.++++|+.|++++|. .....+..+..+++|+.|+++
T Consensus 13 ~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGIP--RDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNR--ISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCCCcCCCCCC--CCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCc--CCEeCHhHccCCCCCCEEECC
Confidence 3455555 44444554332 35555553333322 333 5666666666666665 333333445555666666655
Q ss_pred cCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 98 NESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 98 ~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
++. +.+.. .+.. +++|+.|++++|.+...+...+..+++|++|++++|.+.
T Consensus 87 ~N~-----l~~i~~~~f~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNR-----LRCIPPRTFDG-LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSC-----CCBCCTTTTTT-CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCc-----cCEeCHHHhCC-CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 421 01000 2455 677888888888887776667778888888888877653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=89.58 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=93.2
Q ss_pred CCCCccccccHHHhccccccEEEeCceeecccccc--ccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecC
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGK--YCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~ 75 (202)
++++.++++|..+.. +|++|++++ +....++. .++.+++|++|+....... +.. ++++++|++|++++|.
T Consensus 15 ~s~~~l~~ip~~~~~--~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~- 89 (192)
T 1w8a_A 15 CTGRGLKEIPRDIPL--HTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENK- 89 (192)
T ss_dssp CTTSCCSSCCSCCCT--TCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCC-
T ss_pred cCCCCcCcCccCCCC--CCCEEECCC-CcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCCc-
Confidence 357889999986654 999999999 44444443 3889999999986665544 555 9999999999999998
Q ss_pred chHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
..+..+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|++..+.
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 90 -IKEISNKMFLGLHQLKTLNLYDNQ-----ISCVMPGSFEH-LNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp -CCEECSSSSTTCTTCCEEECCSSC-----CCEECTTSSTT-CTTCCEEECTTCCBCCSG
T ss_pred -CCccCHHHhcCCCCCCEEECCCCc-----CCeeCHHHhhc-CCCCCEEEeCCCCccCcC
Confidence 556566678899999999998743 12222 4666 889999999999988653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.8e-12 Score=90.06 Aligned_cols=82 Identities=17% Similarity=0.095 Sum_probs=41.0
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE--cCCCCCcccEEEeccccCccceeeC----CCcc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC--CSGGFPCLKFLHLKSMLWLDEWTMG----TKAT 189 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~ 189 (202)
+++|+.|++++|.+...++..+..+++|++|++++|.+.. ++. ....+++|+.|++++|+ +..++.. ...+
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKV 139 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHC
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHC
Confidence 5555555665555555444444555566666665555422 111 23345556666666555 3333221 2345
Q ss_pred ccccEEeeecC
Q 037964 190 WKLEHLIINPC 200 (202)
Q Consensus 190 ~~L~~L~i~~c 200 (202)
|+|+.|+++++
T Consensus 140 ~~L~~Ld~~~n 150 (176)
T 1a9n_A 140 PQVRVLDFQKV 150 (176)
T ss_dssp TTCSEETTEEC
T ss_pred CccceeCCCcC
Confidence 55666655544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.9e-11 Score=83.83 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=65.4
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+.+++++ +....+|..+ .+++++|+....... +.++++.+++|++|++++|. .....+..++.+++|+.|+++
T Consensus 10 ~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNS-KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCS-SCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecC-CCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc--ceEeChhHccCCCccCEEECC
Confidence 4455555 3333444322 245555543332221 22225566666666666664 222222334555555555554
Q ss_pred cCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 98 NESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 98 ~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
++. +.+.. .+.. +++|+.|++++|.+...+...+..+++|++|++++|.+.+
T Consensus 85 ~N~-----l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENK-----LQSLPNGVFDK-LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSC-----CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-----ccccCHHHhhC-CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 321 01100 2345 6777777777777777666666777888888887776643
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=97.95 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=113.4
Q ss_pred HHhccc-----cccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHh
Q 037964 12 DIWKMH-----KLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSL 85 (202)
Q Consensus 12 ~~~~l~-----~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 85 (202)
++..++ +|++|++++ +....+|..+. ++|+.|+..++... ++ +.+++|+.|++++|. ..+ +|. +
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~-n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~--l~~-ip~-l 118 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNR-LNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR--LST-LPE-L 118 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCS-SCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC--CSC-CCC-C
T ss_pred hhhhccccccCCccEEEeCC-CCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC--CCC-cch-h
Confidence 456665 999999999 45455887663 78898876555444 22 357999999999997 333 666 5
Q ss_pred ccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCC
Q 037964 86 CELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGF 165 (202)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (202)
.+ +|+.|+++++. +.+ +.. . +++|+.|++++|.+...+. .+++|++|++++|.+.+ ++. ..
T Consensus 119 ~~--~L~~L~Ls~N~-----l~~-lp~-~-l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~--lp~-l~-- 179 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-----LTM-LPE-L-PALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF--LPE-LP-- 179 (571)
T ss_dssp CT--TCCEEECCSSC-----CSC-CCC-C-CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CCC-CC--
T ss_pred hc--CCCEEECCCCc-----CCC-CCC-c-CccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC--cch-hh--
Confidence 55 99999998643 111 212 4 7899999999999987543 57899999999988765 333 22
Q ss_pred CcccEEEeccccCccceeeCCCccccc-------cEEeeecCC
Q 037964 166 PCLKFLHLKSMLWLDEWTMGTKATWKL-------EHLIINPCA 201 (202)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~~~~~~~~~L-------~~L~i~~c~ 201 (202)
++|+.|++++|. +..++. .. ++| +.|++++|.
T Consensus 180 ~~L~~L~Ls~N~-L~~lp~-~~--~~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 180 ESLEALDVSTNL-LESLPA-VP--VRNHHSEETEIFFRCRENR 218 (571)
T ss_dssp TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC
T ss_pred CCCCEEECcCCC-CCchhh-HH--HhhhcccccceEEecCCCc
Confidence 899999999997 776665 22 267 999998864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-11 Score=88.35 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=93.1
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.++.++++|..+. ++|++|++++ +....+|..+..+++|+.|+....... +..++..+++|+.|++++|+ ...
T Consensus 18 ~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--l~~ 92 (193)
T 2wfh_A 18 SNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR--LRC 92 (193)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCB
T ss_pred CCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc--cCE
Confidence 5678889997653 6899999999 665678888999999999986665544 33339999999999999998 555
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDD 132 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~ 132 (202)
..+..+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|++..+
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~-----l~-~~~~~~~~~-l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGND-----IS-VVPEGAFND-LSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CC-BCCTTTTTT-CTTCCEEECCSSCEECS
T ss_pred eCHHHhCCCCCCCEEECCCCC-----CC-eeChhhhhc-CccccEEEeCCCCeecC
Confidence 566789999999999998643 11 11 3566 88999999999987654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-12 Score=94.19 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=30.4
Q ss_pred cccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeec
Q 037964 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 6 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~ 74 (202)
+..+|.++..+++|++|++++ |....+| .++.+++|+.|+....... +.. +..+++|+.|++++|.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~-n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQ 104 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSE-EEESCCC-CHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCC-CCCcccc-ccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCc
Confidence 334444555555555555555 3322344 4555555555543332211 222 3344555555555553
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-11 Score=101.14 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCCccEEEee--C----CCCCCCCCc-----cccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee
Q 037964 116 PQSLTHLSLT--N----TKLKDDPMP-----TLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM 184 (202)
Q Consensus 116 l~~L~~L~l~--~----~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 184 (202)
+++|+.|++. + +.++..+.+ .+..+++|+.|++++ .+.+..+......+++|+.|++++|. +.....
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHH
Confidence 6788888888 3 344433221 245678888888864 44333222122237889999999887 432211
Q ss_pred --CCCccccccEEeeecCC
Q 037964 185 --GTKATWKLEHLIINPCA 201 (202)
Q Consensus 185 --~~~~~~~L~~L~i~~c~ 201 (202)
-...+++|++|++++|+
T Consensus 474 ~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp HHHHHHCTTCCEEEEESCS
T ss_pred HHHHhcCCCcCEEECcCCC
Confidence 11458999999999986
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-11 Score=87.46 Aligned_cols=59 Identities=12% Similarity=-0.033 Sum_probs=38.1
Q ss_pred HhccccccEEEeCceeeccccccccccCC-CcceecccccCch-hHHHcCcCCccceeeEEeec
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALE-NLNFISALHLSSC-TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 74 (202)
+.++.+|++|++++ +....+|. +..+. +|+.|+..+.... ... ++.+++|++|++++|.
T Consensus 15 ~~~~~~L~~L~l~~-n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 15 YTNAVRDRELDLRG-YKIPVIEN-LGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNR 75 (176)
T ss_dssp EECTTSCEEEECTT-SCCCSCCC-GGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSC
T ss_pred cCCcCCceEEEeeC-CCCchhHH-hhhcCCCCCEEECCCCCCCcccc-cccCCCCCEEECCCCc
Confidence 56678889999998 44334543 44444 7777765444433 444 6777777777777775
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.7e-11 Score=101.62 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=90.5
Q ss_pred ccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHH
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLS 82 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (202)
.+...|..+..+++|+.|++++ +....+|..+..+++|+.|++..+... |.+ ++++++|+.|+|++|. .. .+|
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~--l~-~lp 286 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSN-LQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNR--LT-SLP 286 (727)
T ss_dssp ----------CCCCCCEEECTT-SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSC--CS-SCC
T ss_pred ceecChhhhccCCCCcEEECCC-CCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCc--CC-ccC
Confidence 3444466678888888888888 555577777778888888876555444 666 8888888888888886 33 668
Q ss_pred HHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCC-CcceEEeccCccCC
Q 037964 83 KSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLP-HLLVLKLKQNSFSR 155 (202)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~ 155 (202)
..++.+++|++|+++++. -+.+ .+.. +++|+.|+|++|.+.+.++..+.... .+..+++.+|.+.+
T Consensus 287 ~~~~~l~~L~~L~L~~N~------l~~lp~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM------VTTLPWEFGN-LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SSGGGGTTCSEEECCSSC------CCCCCSSTTS-CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred hhhcCCCCCCEEECCCCC------CCccChhhhc-CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 888888888888887642 1122 4566 78888888888888876666655332 22235666666654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=82.35 Aligned_cols=122 Identities=19% Similarity=0.131 Sum_probs=89.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.+++++++|..+. ++|++|++++|......+..++.+++|++|+....... +.++++.+++|+.|++++|. ...
T Consensus 15 ~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~--l~~ 90 (177)
T 2o6r_A 15 NSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK--LQS 90 (177)
T ss_dssp CSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred cCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC--ccc
Confidence 4677888886543 79999999994444444445788999999986655433 44437899999999999997 554
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
..+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~-----l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQ-----LKSVPDGIFDR-LTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CSCCCTTTTTT-CTTCCEEECCSSCBCCCH
T ss_pred cCHHHhhCCcccCEEECcCCc-----ceEeCHHHhcC-CcccCEEEecCCCeeccC
Confidence 444567899999999998643 11111 2466 889999999999888654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-13 Score=97.64 Aligned_cols=132 Identities=16% Similarity=0.106 Sum_probs=62.5
Q ss_pred HHHhccccccEEEeCceeecccccc------ccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHH
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGK------YCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSK 83 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~------~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (202)
..+.....++.++++.+...+..|. .++.+++|++|+....... ++. +.++++|++|++++|. ...+|.
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~-~~~l~~L~~L~l~~n~---l~~l~~ 87 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNL---IKKIEN 87 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCC-HHHHTTCCEEEEEEEE---ECSCSS
T ss_pred HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccc-cccCCCCCEEECCCCC---cccccc
Confidence 3456667777777777544555543 4555555555553333222 223 5555556666665554 223444
Q ss_pred HhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCC-ccccCCCCcceEEeccCcc
Q 037964 84 SLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPM-PTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 153 (202)
.+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|.+...+. ..+..+++|++|++++|.+
T Consensus 88 ~~~~~~~L~~L~L~~N~-----l~-~l~~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQ-----IA-SLSGIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHHCSEEEEEEEE-----CC-CHHHHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred hhhcCCcCCEEECcCCc-----CC-cCCcccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 44444455555554321 00 00 1223 4445555555554443221 2344455555555554444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.89 E-value=5.7e-10 Score=79.25 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=49.6
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEe
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKL 96 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (202)
+++++++ +....+|..+. ++++.|+..+.... +.. ++++++|++|++++|+ .....+..+..+++|+.|++
T Consensus 12 ~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~--l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIP--TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQ--LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCC-CCcCccCccCC--CCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCC--cCccChhhccCCCCCCEEEC
Confidence 4555555 44444554332 45555543333322 333 5555666666666554 33322333455566666666
Q ss_pred ecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCC
Q 037964 97 VNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDD 132 (202)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~ 132 (202)
+++. +.+.. .+.. +++|+.|++++|++...
T Consensus 86 ~~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQ-----LKSIPRGAFDN-LKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSC-----CCCCCTTTTTT-CTTCCEEECCSSCBCTT
T ss_pred CCCc-----cCEeCHHHhcC-CCCCCEEEeCCCCCCCC
Confidence 5421 01100 2445 66777777777776654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-10 Score=79.59 Aligned_cols=102 Identities=19% Similarity=0.052 Sum_probs=49.4
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEe
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKL 96 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (202)
+.+++++ +....+|..+. ++|+.|+..+.... +.. ++++++|++|++++|+ .....+..+.++++|+.|++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNK--LTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCC--CCccChhHhCCcchhhEEEC
Confidence 3455555 44444554432 45555543333222 223 5555556666665554 22222223455556666665
Q ss_pred ecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 97 VNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
+++. +.+.. .+.. +++|+.|++++|++...+
T Consensus 89 ~~N~-----l~~l~~~~~~~-l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 89 NDNH-----LKSIPRGAFDN-LKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CSSC-----CCCCCTTTTTT-CTTCSEEECCSSCBCTTB
T ss_pred CCCc-----cceeCHHHhcc-ccCCCEEEeCCCCccccc
Confidence 5421 01000 2455 677777777777766543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=72.37 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=65.8
Q ss_pred ceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCc
Q 037964 66 QSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHL 143 (202)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 143 (202)
+.++++++. ...+|..+. ++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|
T Consensus 15 ~~l~~~~n~---l~~iP~~~~--~~L~~L~Ls~N~-----l~~~~~~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIR---LASVPAGIP--TDKQRLWLNNNQ-----ITKLEPGVFDH-LVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSC---CSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCC---CCccCCCcC--CCCcEEEeCCCC-----ccccCHHHhcC-CcCCCEEECCCCCCCccChhHhCCcchh
Confidence 456666664 344555443 678888887532 11111 3556 7788888888888888776677788888
Q ss_pred ceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 144 LVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
++|++++|.+..-. +.....+++|+.|++++|+
T Consensus 84 ~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 84 TQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred hEEECCCCccceeC-HHHhccccCCCEEEeCCCC
Confidence 88888877765311 1124567888888888877
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.2e-09 Score=80.75 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=37.9
Q ss_pred cccccEEEeCceeecc-------------------ccccc-ccc--------CCCcceecccccCch--hHHHcCcCCcc
Q 037964 16 MHKLRHLNFGYIKLHA-------------------HPGKY-CSA--------LENLNFISALHLSSC--TRDILGRLPNL 65 (202)
Q Consensus 16 l~~L~~L~l~~~~~~~-------------------~~p~~-l~~--------l~~L~~L~~~~~~~~--~~~~l~~l~~L 65 (202)
+++|++|++++|.... .+|.. +.+ +++|+++...+ ... ...||..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 6779999999943330 23332 455 78888877544 322 44448889999
Q ss_pred ceeeEEeec
Q 037964 66 QSLKIFEDL 74 (202)
Q Consensus 66 ~~L~l~~~~ 74 (202)
+.+++..+.
T Consensus 127 ~~l~l~~n~ 135 (329)
T 3sb4_A 127 KICQIRKKT 135 (329)
T ss_dssp CEEEBCCSS
T ss_pred ceEEcCCCC
Confidence 999888775
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-08 Score=71.06 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=66.5
Q ss_pred cceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 65 LQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
.+.++++++. ...+|..+. ++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..+.++++
T Consensus 11 ~~~l~~s~n~---l~~ip~~~~--~~l~~L~L~~N~-----i~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKS---LASVPTGIP--TTTQVLYLYDNQ-----ITKLEPGVFDR-LTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSC---CSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEeCCCC---cCccCccCC--CCCcEEEcCCCc-----CCccChhhhcC-cccCCEEECCCCCcCccChhhccCCCC
Confidence 3456666664 333554442 678888887532 11111 3556 788888888888888777777788888
Q ss_pred cceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 143 LLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
|++|++++|.+.+-. +.....+++|+.|++++|+
T Consensus 80 L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 80 LTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence 888888877775421 1224567888888888876
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.7e-10 Score=89.01 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=75.4
Q ss_pred ccccEEEeCceeecccccccccc-----CCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHH----HHHH
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSA-----LENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSV----LSKS 84 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~-----l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~ 84 (202)
+.|++|++++|.....-...+.. ..+|++|+..++... +......+++|+.|++++|. ..+. +...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~--l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS--LGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC--CCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC--CCHHHHHHHHHH
Confidence 56677777774332221111211 246666664443321 22212234567777777765 3322 2223
Q ss_pred h-ccCCCccEEEeecCcchhhchhc--cc--ccccCCCCccEEEeeCCCCCCCC----CccccCCCCcceEEeccCccCC
Q 037964 85 L-CELRCLDSLKLVNESNMLGILQI--DI--AEYQFPQSLTHLSLTNTKLKDDP----MPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 85 l-~~l~~L~~L~l~~~~~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
+ ...++|+.|+++++.-. + .| .+ .+.. .++|+.|++++|.+...+ ...+...++|+.|++++|.+.+
T Consensus 150 L~~~~~~L~~L~Ls~n~l~-~--~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLT-A--AGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHSTTCCCCEEECCSSCCH-H--HHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCccceeeCCCCCCC-h--HHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3 23566777777653200 0 00 00 2244 566777777777665433 2334455667777777666543
Q ss_pred ceEE---EcCCCCCcccEEEecccc
Q 037964 156 RKLA---CCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 156 ~~~~---~~~~~~~~L~~L~l~~~~ 177 (202)
.... ......++|++|++++|.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC
Confidence 2211 111134667777777765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.3e-09 Score=81.64 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=83.8
Q ss_pred ccHHHhccccccEEEeCceeec---------cccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchH
Q 037964 9 TPEDIWKMHKLRHLNFGYIKLH---------AHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 9 lp~~~~~l~~L~~L~l~~~~~~---------~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
+..++.++++|+.|.+...... ..++..+..+++|+.|......+. ... + .+++|+.|++..+. ..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~--l~ 206 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG--LP 206 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB--CC
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC--CC
Confidence 3445667788888888652110 113233455677777764332212 222 3 26777777777665 44
Q ss_pred HHHHHHhc--cCCCccEEEeecCcc-h-hhc-hh--ccc-ccccCCCCccEEEeeCCCCCCCCCccc---cCCCCcceEE
Q 037964 79 SVLSKSLC--ELRCLDSLKLVNESN-M-LGI-LQ--IDI-AEYQFPQSLTHLSLTNTKLKDDPMPTL---EKLPHLLVLK 147 (202)
Q Consensus 79 ~~~~~~l~--~l~~L~~L~l~~~~~-~-~~~-~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~ 147 (202)
......++ .+++|+.|+++.... . -+. +. ..+ .... +++|+.|++.+|.+.......+ ..+++|++|+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~-~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR-FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT-CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC-CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence 44444444 577777777753100 0 000 00 000 1123 5677777777776653221222 2456777777
Q ss_pred eccCccCCceE---EEcCCCCCcccEEEecccc
Q 037964 148 LKQNSFSRRKL---ACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 148 l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 177 (202)
++.|.+.+.+. ......+++|+.|++++|.
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 77666544221 1111246777777777665
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.7e-07 Score=70.68 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=62.4
Q ss_pred cCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcc-eEEeccCccCCceEEEcC
Q 037964 87 ELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLL-VLKLKQNSFSRRKLACCS 162 (202)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 162 (202)
.+++|+.++++.+. -..+ .+.. +.+|+.+++..+ +...+..+|.++++|+ .+++.. ... ..-....
T Consensus 224 ~~~~L~~l~L~~n~------i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF 293 (329)
T 3sb4_A 224 YMPNLVSLDISKTN------ATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAF 293 (329)
T ss_dssp HCTTCCEEECTTBC------CCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTT
T ss_pred hcCCCeEEECCCCC------cceecHhhhhC-CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhh
Confidence 36788888886421 0011 4566 788888888876 6666677888888888 888864 332 1101223
Q ss_pred CCCCcccEEEeccccCccceeeCC-CccccccEEe
Q 037964 163 GGFPCLKFLHLKSMLWLDEWTMGT-KATWKLEHLI 196 (202)
Q Consensus 163 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~ 196 (202)
.++++|+.+++..+. +..+.... ..+++|+.++
T Consensus 294 ~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 457788888887666 66554332 3456777765
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-08 Score=79.09 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=66.7
Q ss_pred ccccccHHHhccccccEEEeCc-eeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGY-IKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
+++.||. +..+++|++|++++ |......+..++.+++|+.|++.++... ++.+|+++++|+.|+|++|. .. .+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~-~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA--LE-SL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC--CS-CC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc--cc-ee
Confidence 7888999 99999999999985 4444444466889999999986665544 43338999999999999997 33 34
Q ss_pred HH-HhccCCCccEEEeecC
Q 037964 82 SK-SLCELRCLDSLKLVNE 99 (202)
Q Consensus 82 ~~-~l~~l~~L~~L~l~~~ 99 (202)
|. .+..++ |+.|++.++
T Consensus 96 ~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CSTTTCSCC-CCEEECCSS
T ss_pred CHHHcccCC-ceEEEeeCC
Confidence 44 344444 999998764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-08 Score=78.89 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=98.2
Q ss_pred CCCcccccc-HHHhcc-----ccccEEEeCceeeccccccc-cccCCCcceecccccCch------hHHHc-CcCCccce
Q 037964 2 PLSFIDHTP-EDIWKM-----HKLRHLNFGYIKLHAHPGKY-CSALENLNFISALHLSSC------TRDIL-GRLPNLQS 67 (202)
Q Consensus 2 ~~~~~~~lp-~~~~~l-----~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~------~~~~l-~~l~~L~~ 67 (202)
+++.++... ..+... ++|++|++++|.....-... ...+.+|++|+...+... ..+++ ...++|+.
T Consensus 80 s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~ 159 (372)
T 3un9_A 80 AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159 (372)
T ss_dssp TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCE
T ss_pred cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccce
Confidence 455555533 223333 79999999995443322222 244678888886555422 22323 35789999
Q ss_pred eeEEeecCc--hHHHHHHHhccCCCccEEEeecCcchhhchhc--cc--ccccCCCCccEEEeeCCCCCCCCCc----cc
Q 037964 68 LKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQI--DI--AEYQFPQSLTHLSLTNTKLKDDPMP----TL 137 (202)
Q Consensus 68 L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l 137 (202)
|++++|... ....++..+...++|++|+++++.-. + .| .+ .+.. .++|+.|++++|.+...+.. .+
T Consensus 160 L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~-~--~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~~g~~~l~~~L 235 (372)
T 3un9_A 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG-D--EGLELLAAQLDR-NRQLQELNVAYNGAGDTAALALARAA 235 (372)
T ss_dssp EECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH-H--HHHHHHHHHGGG-CSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred eeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC-c--HHHHHHHHHHhc-CCCcCeEECCCCCCCHHHHHHHHHHH
Confidence 999999721 12356677788999999999875300 0 01 01 3556 78999999999999865433 34
Q ss_pred cCCCCcceEEeccCccCCc
Q 037964 138 EKLPHLLVLKLKQNSFSRR 156 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~ 156 (202)
...++|++|++++|.+.+.
T Consensus 236 ~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 236 REHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHCSSCCEEECTTSSCCHH
T ss_pred HhCCCCCEEeccCCCCCHH
Confidence 4679999999999887653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-08 Score=70.30 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=54.5
Q ss_pred CCccEEEeeCCCCCCCCCccccCCCCcceEEeccCc-cCCceEEEcCCC---CCcccEEEeccccCcccee-eCCCcccc
Q 037964 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNS-FSRRKLACCSGG---FPCLKFLHLKSMLWLDEWT-MGTKATWK 191 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~-~~~~~~~~ 191 (202)
..|++|++++|.++......+.++++|++|+++++. +.+..+...... .++|+.|++++|..+++-- .....+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357888888887777667777778888888887654 333332222221 3568888888877665321 11235778
Q ss_pred ccEEeeecCCC
Q 037964 192 LEHLIINPCAS 202 (202)
Q Consensus 192 L~~L~i~~c~~ 202 (202)
|++|++++|++
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 88888888863
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-07 Score=73.13 Aligned_cols=99 Identities=21% Similarity=0.097 Sum_probs=73.1
Q ss_pred eeEEeecCchHHHHHHHhccCCCccEEEeec-Ccchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcc
Q 037964 68 LKIFEDLSHYQSVLSKSLCELRCLDSLKLVN-ESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLL 144 (202)
Q Consensus 68 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 144 (202)
++++++. ....+|. +..+++|+.|++++ +. +.+.. .+.. +++|+.|+|++|++...++..|+++++|+
T Consensus 13 v~~~~~n--~l~~ip~-l~~~~~L~~L~l~~~n~-----l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 13 LRCTRDG--ALDSLHH-LPGAENLTELYIENQQH-----LQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp EECCSSC--CCTTTTT-SCSCSCCSEEECCSCSS-----CCEECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEcCCCC--CCCccCC-CCCCCCeeEEEccCCCC-----CCCcChhHhcc-ccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 4555441 2445888 99999999999974 32 11111 4677 99999999999999998888999999999
Q ss_pred eEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 145 VLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
.|++++|.+.+ ++........|+.|++.+|+
T Consensus 84 ~L~l~~N~l~~--~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 84 RLNLSFNALES--LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp EEECCSSCCSC--CCSTTTCSCCCCEEECCSSC
T ss_pred EEeCCCCccce--eCHHHcccCCceEEEeeCCC
Confidence 99999988864 22222222239999999987
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.41 E-value=7.2e-07 Score=71.74 Aligned_cols=67 Identities=6% Similarity=0.010 Sum_probs=35.7
Q ss_pred cccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEe
Q 037964 5 FIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFE 72 (202)
Q Consensus 5 ~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~ 72 (202)
.+..|+ .++.++++|+.+++.. +....++...-...+|+.+..-..-.. ...||.++++|+.+.+..
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence 344454 3567777777777776 444445544322455555543211111 333366677777666654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=69.03 Aligned_cols=185 Identities=8% Similarity=-0.007 Sum_probs=110.0
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
+.+++..||.......+|+.+.+.. +....-...+.++.+|+.+..-..-.. ...||.+ .+|+.+.+..+ ....
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNI 262 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEE
T ss_pred CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEE
Confidence 4567888887655578999999987 433333334778888888874332122 3333666 78888888543 3333
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
-...|..+++|+.+++..+....+ -...+ .+.. +++|+.+++. +.+...+..+|.++.+|+.+++.. .... .
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~-~~~~I~~~aF~~-c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~-I 337 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDD-PEAMIHPYCLEG-CPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQ-I 337 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCC-TTCEECTTTTTT-CTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCE-E
T ss_pred ChhHhhCCCCCCEEEeCCccccCC-cccEECHHHhhC-CccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccE-E
Confidence 456778888898888865320000 00011 4566 7888888887 446666677888888888888863 3211 1
Q ss_pred EEEcCCCCCcccEEEeccccCccceeeC-CCccc-cccEEeee
Q 037964 158 LACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATW-KLEHLIIN 198 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~-~L~~L~i~ 198 (202)
-.....++ +|+.+.+.++. ...+... -..++ .++.|.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEEC
T ss_pred cHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeC
Confidence 01122345 78888888775 4333221 12232 45666553
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.4e-07 Score=71.04 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=89.9
Q ss_pred cccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcC--cCCccceeeEEeecCch-----
Q 037964 8 HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILG--RLPNLQSLKIFEDLSHY----- 77 (202)
Q Consensus 8 ~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~--~l~~L~~L~l~~~~~~~----- 77 (202)
.++..+..+++|+.|.+++ +....++. + .+++|++|........ ... +. .+|+|+.|+|+.+....
T Consensus 163 ~L~~ll~~~P~L~~L~L~g-~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKG-TNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp BCHHHHHTCTTCCEEEEEC-CBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred CHHHHHhcCCCCcEEEEeC-CCCceecc-c-cCCCCcEEEEecCCCChHHHHH-HHHccCCCCcEEEEeccccccccchh
Confidence 4667778899999999998 43334554 3 3789999985443322 434 43 78999999997421001
Q ss_pred HHHHHHHh--ccCCCccEEEeecCcchhhchhcc--c-ccccCCCCccEEEeeCCCCCCCCCc----cccCCCCcceEEe
Q 037964 78 QSVLSKSL--CELRCLDSLKLVNESNMLGILQID--I-AEYQFPQSLTHLSLTNTKLKDDPMP----TLEKLPHLLVLKL 148 (202)
Q Consensus 78 ~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 148 (202)
...+...+ ..+++|+.|++..+.-. + .+. + .... +++|+.|+|+.|.+...... .+..+++|+.|++
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~-~--~~~~~la~a~~-~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQ-N--VVVEMFLESDI-LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCTTH-H--HHHHHHHHCSS-GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCCCc-h--HHHHHHHhCcc-CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11222233 25789999999864310 0 000 1 1124 78999999999988764322 3356799999999
Q ss_pred ccCccCC
Q 037964 149 KQNSFSR 155 (202)
Q Consensus 149 ~~~~~~~ 155 (202)
+.|.+.+
T Consensus 315 ~~n~i~d 321 (362)
T 2ra8_A 315 KYNYLSD 321 (362)
T ss_dssp CSBBCCH
T ss_pred CCCcCCH
Confidence 9776644
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-06 Score=62.48 Aligned_cols=119 Identities=9% Similarity=0.084 Sum_probs=73.2
Q ss_pred hHHHcCcCCccceeeEEee-cC--chHHHHHHHhccCCCccEEEeecCcchhhchhcc--c--ccccCCCCccEEEeeCC
Q 037964 55 TRDILGRLPNLQSLKIFED-LS--HYQSVLSKSLCELRCLDSLKLVNESNMLGILQID--I--AEYQFPQSLTHLSLTNT 127 (202)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~-~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~--~~~~~l~~L~~L~l~~~ 127 (202)
...++...++|++|++++| .. .....+...+...++|+.|+++++.-. + .|. + .+.. .++|++|+|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~-~--~g~~~l~~~L~~-n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN-D--PVAFALAEMLKV-NNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC-H--HHHHHHHHHHHH-CSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC-h--HHHHHHHHHHHh-CCCcCEEECcCC
Confidence 3444777888888888887 51 123446667777788888888763200 0 010 1 2344 577888888888
Q ss_pred CCCCCC----CccccCCCCcceEEe--ccCccCCceEE---EcCCCCCcccEEEecccc
Q 037964 128 KLKDDP----MPTLEKLPHLLVLKL--KQNSFSRRKLA---CCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 128 ~~~~~~----~~~l~~l~~L~~L~l--~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~ 177 (202)
.+.... ...+...+.|++|++ ++|.+..+... ......++|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 877644 334556678888888 66666543311 112234678888887776
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-05 Score=55.75 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=29.6
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccC----CCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCC
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCEL----RCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTK 128 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 128 (202)
+..+++|+.|++++|.. .++.-...++.+ ++|+.|+++++..+.| .|-..+.. +++|+.|++++|.
T Consensus 81 L~~~~~L~~L~L~~C~~-ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~-~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHY-IEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHH-FRNLKYLFLSDLP 150 (176)
T ss_dssp GTTCSCCCEEEEESCTT-CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGG-CTTCCEEEEESCT
T ss_pred hcCCCCCCEEEeCCCCc-cCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhc-CCCCCEEECCCCC
Confidence 45555555555555531 233333344432 2455555555322111 11002344 5666666666653
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=57.54 Aligned_cols=92 Identities=21% Similarity=0.134 Sum_probs=50.2
Q ss_pred cCcCCccceeeEEeecCc--hHHHHHHHhccCCCccEEEeecCcchhhchhcc--c--ccccCCCCccEEEe--eCCCCC
Q 037964 59 LGRLPNLQSLKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQID--I--AEYQFPQSLTHLSL--TNTKLK 130 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~--~~~~~l~~L~~L~l--~~~~~~ 130 (202)
+...++|++|++++|... ....+...+...+.|+.|+++++.=. + .|. + .+.. .++|+.|++ ++|.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~-~--~g~~~l~~~L~~-n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS-G--SGILALVEALQS-NTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-H--HHHHHHHHGGGG-CSSCCEEECCCCSSCCC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC-H--HHHHHHHHHHHh-CCCceEEEecCCCCCCC
Confidence 555666777777666511 12234445555566777777653200 0 010 0 3444 567777777 667766
Q ss_pred CCCC----ccccCCCCcceEEeccCccC
Q 037964 131 DDPM----PTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 131 ~~~~----~~l~~l~~L~~L~l~~~~~~ 154 (202)
.... ..+...+.|++|++++|.+.
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5432 23344577888888766653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.70 E-value=2.2e-05 Score=59.49 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=53.2
Q ss_pred hccccccEEEeCceeecc--ccccccccCCCcceecccccCch-hHHHcCcCC--ccceeeEEeecCchH-------HHH
Q 037964 14 WKMHKLRHLNFGYIKLHA--HPGKYCSALENLNFISALHLSSC-TRDILGRLP--NLQSLKIFEDLSHYQ-------SVL 81 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~--~L~~L~l~~~~~~~~-------~~~ 81 (202)
.++++|+.|++++|.... .+|..++.+++|+.|++.++... ..+ ++.+. +|+.|++.+|. .. ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Np--l~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNS--LCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTST--TGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCc--CccccCcchhHH
Confidence 467889999999954433 44555677888888886655444 444 44444 88888888887 33 223
Q ss_pred HHHhccCCCccEEEe
Q 037964 82 SKSLCELRCLDSLKL 96 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l 96 (202)
...+..+++|+.||=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 345677788887753
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.65 E-value=1.5e-05 Score=60.46 Aligned_cols=81 Identities=22% Similarity=0.158 Sum_probs=56.3
Q ss_pred ccCCCCccEEEeeCCCCCCCC--CccccCCCCcceEEeccCccCCceEEEcCCCCC--cccEEEeccccCcccee-----
Q 037964 113 YQFPQSLTHLSLTNTKLKDDP--MPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFP--CLKFLHLKSMLWLDEWT----- 183 (202)
Q Consensus 113 ~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~----- 183 (202)
.. +++|+.|+|++|++.+.. +..++.+++|+.|++++|.+.+.. ..+.+. +|+.|++++|+....++
T Consensus 167 ~~-l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~---~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 EN-IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---ELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HH-CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG---GGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hh-CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch---hhhhcccCCcceEEccCCcCccccCcchhH
Confidence 45 788999999999888743 345668999999999988886531 122233 89999999998333222
Q ss_pred --eCCCccccccEEee
Q 037964 184 --MGTKATWKLEHLII 197 (202)
Q Consensus 184 --~~~~~~~~L~~L~i 197 (202)
.....||+|+.|+=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 11356888888763
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0061 Score=40.77 Aligned_cols=38 Identities=34% Similarity=0.442 Sum_probs=34.7
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
+.+++.|+|++|++...+...|..+++|+.|++.+|.+
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 56899999999999999888999999999999998876
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.034 Score=44.08 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=29.6
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (202)
+.. +.+|+.+++..+ +...+..+|.++.+|+.+++..+ .. ..-.....++++|+.+.+..
T Consensus 316 F~~-c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FES-CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTT-CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEG
T ss_pred hcC-CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECC
Confidence 444 566666666432 44444556666666666666422 21 00011123455666666643
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.015 Score=46.09 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=56.3
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
+..+.+|+.+.+..+ ....-...+..+.+|+.+++...-.. -|.-.+.. +.+|+.+++..+ +...+..+|.
T Consensus 293 F~~~~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~v~~----I~~~aF~~-c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS---VKFIGEEAFESCTSLVSIDLPYLVEE----IGKRSFRG-CTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp TTTCTTCCEEEECTT---CCEECTTTTTTCTTCCEECCCTTCCE----ECTTTTTT-CTTCCEECCCTT-CCEECTTTBT
T ss_pred ccccccccccccccc---cceechhhhcCCCCCCEEEeCCcccE----EhHHhccC-CCCCCEEEECcc-ccEehHHHhh
Confidence 667777887777543 22223346777888888888642100 00004666 889999999765 6666678999
Q ss_pred CCCCcceEEecc
Q 037964 139 KLPHLLVLKLKQ 150 (202)
Q Consensus 139 ~l~~L~~L~l~~ 150 (202)
++.+|+.+++..
T Consensus 364 ~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEEEEEG
T ss_pred CCCCCCEEEECC
Confidence 999999999963
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0075 Score=47.92 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=71.3
Q ss_pred cccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccC
Q 037964 37 CSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQF 115 (202)
Q Consensus 37 l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 115 (202)
+.++.+|+.+..-+.... ...++.++++|+.+.+... ....-...|..+.+|+.+++..+-.. -|.-.+..
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~v~~----I~~~aF~~- 332 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR---ITELPESVFAGCISLKSIDIPEGITQ----ILDDAFAG- 332 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE----ECTTTTTT-
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCc---ccccCceeecCCCCcCEEEeCCcccE----ehHhHhhC-
Confidence 555666766653222122 3333777888888877532 22223346777888888888642100 00004666
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (202)
+.+|+.+.+..+ +...+..+|.++.+|+.+++.++..... ....+.+|+.+.+..
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~----~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN----AISTDSGLQNLPVAP 387 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH----TCBCCCCC-------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh----hhhccCCCCEEEeCC
Confidence 889999999644 6666678899999999999975443211 122345566665543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.028 Score=44.18 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=47.5
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
+..+.+|+.+.+..+ ....-...+..+.+|+.+.+...-.. -+.-.+.. +.+|+.+.+.++.+...+..+|.
T Consensus 236 f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~i~~----i~~~aF~~-c~~L~~i~l~~~~i~~I~~~aF~ 307 (379)
T 4h09_A 236 FYGMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAKVKT----VPYLLCSG-CSNLTKVVMDNSAIETLEPRVFM 307 (379)
T ss_dssp TTTCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCCCSE----ECTTTTTT-CTTCCEEEECCTTCCEECTTTTT
T ss_pred ccCCccceEEEcCCC---ccEeCccccceeehhcccccccccee----cccccccc-ccccccccccccccceehhhhhc
Confidence 566667776666543 22222334556666777766431100 00003445 67777777777766666666777
Q ss_pred CCCCcceEEec
Q 037964 139 KLPHLLVLKLK 149 (202)
Q Consensus 139 ~l~~L~~L~l~ 149 (202)
++.+|+.+.+.
T Consensus 308 ~c~~L~~i~lp 318 (379)
T 4h09_A 308 DCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEECC
T ss_pred CCCCCCEEEcC
Confidence 77777777775
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.042 Score=43.52 Aligned_cols=128 Identities=10% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcc
Q 037964 57 DILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPT 136 (202)
Q Consensus 57 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 136 (202)
.|+..+++|+.+.+... ....-...+..++.|+.+.+...-.. -+.-.+.. +.+|+.+++..+ +...+..+
T Consensus 259 ~aF~~c~~L~~i~lp~~---~~~I~~~aF~~c~~L~~i~l~~~i~~----I~~~aF~~-c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS---VVSIGTGAFMNCPALQDIEFSSRITE----LPESVFAG-CISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp TTTTTCSSCCEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE----ECTTTTTT-CTTCCEEECCTT-CCEECTTT
T ss_pred ceeeecccccEEecccc---cceecCcccccccccccccCCCcccc----cCceeecC-CCCcCEEEeCCc-ccEehHhH
Confidence 34888999999988654 23333456778899999988642100 00004666 889999999754 66566678
Q ss_pred ccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeee
Q 037964 137 LEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIIN 198 (202)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~ 198 (202)
|.++.+|+.+.+- +.... .-..-..++.+|+.+.+.++.. .+. ....+..|+.+.+.
T Consensus 330 F~~C~~L~~i~ip-~sv~~-I~~~aF~~C~~L~~i~~~~~~~--~~~-~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 330 FAGCEQLERIAIP-SSVTK-IPESAFSNCTALNNIEYSGSRS--QWN-AISTDSGLQNLPVA 386 (394)
T ss_dssp TTTCTTCCEEEEC-TTCCB-CCGGGGTTCTTCCEEEESSCHH--HHH-TCBCCCCC------
T ss_pred hhCCCCCCEEEEC-cccCE-EhHhHhhCCCCCCEEEECCcee--ehh-hhhccCCCCEEEeC
Confidence 9999999999996 33321 1012335688999999887541 111 11234566666654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.024 Score=44.63 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=48.5
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
+....+|+.+.+... ....-...+..+..|+.+.+..+-.. -|...+.. +.+|+.+.+.. ++...+..++.
T Consensus 213 f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~v~~----I~~~aF~~-~~~l~~i~l~~-~i~~i~~~aF~ 283 (379)
T 4h09_A 213 FSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKNVTS----IGSFLLQN-CTALKTLNFYA-KVKTVPYLLCS 283 (379)
T ss_dssp TTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTTCCE----ECTTTTTT-CTTCCEEEECC-CCSEECTTTTT
T ss_pred cccccccceeeeccc---eeEEccccccCCccceEEEcCCCccE----eCccccce-eehhccccccc-cceeccccccc
Confidence 445556665555432 12222234455666666666432100 00002344 55666666643 24444445666
Q ss_pred CCCCcceEEeccCccCCceEEEcCCCCCcccEEEec
Q 037964 139 KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLK 174 (202)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 174 (202)
++.+|+.+.+..+.... .-.....++.+|+.+.+-
T Consensus 284 ~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccce-ehhhhhcCCCCCCEEEcC
Confidence 66777777665333321 000112234556666553
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.21 Score=35.78 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=63.5
Q ss_pred hHHHcCcCCccceeeEEee-c--CchHHHHHHHhccCCCccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCC
Q 037964 55 TRDILGRLPNLQSLKIFED-L--SHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNT 127 (202)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~-~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~ 127 (202)
...++.+-+.|+.|+++++ . ......+.+.+..-+.|+.|+++++.-. + .|.. .+.. =+.|+.|+|++|
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig-d--~ga~alA~aL~~-N~tL~~L~L~~N 108 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-D--SEARGLIELIET-SPSLRVLNVESN 108 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB-H--HHHTTHHHHHHH-CSSCCEEECCSS
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC-h--HHHHHHHHHHhc-CCccCeEecCCC
Confidence 3333555677888888764 3 1123345666776678888888753200 0 0111 2233 467888888888
Q ss_pred CCCCCCCc----cccCCCCcceEEeccCc--cCCce----EEEcCCCCCcccEEEecccc
Q 037964 128 KLKDDPMP----TLEKLPHLLVLKLKQNS--FSRRK----LACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 128 ~~~~~~~~----~l~~l~~L~~L~l~~~~--~~~~~----~~~~~~~~~~L~~L~l~~~~ 177 (202)
.+...+.. .+..-..|++|+++++. ..+.. +......-++|+.|+++.+.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 87754433 33444568888886321 11211 11111224567777776543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=90.42 E-value=0.17 Score=36.30 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=22.8
Q ss_pred hHHHcCcCCccceeeEEeecCchHH----HHHHHhccCCCccEEEeec
Q 037964 55 TRDILGRLPNLQSLKIFEDLSHYQS----VLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~ 98 (202)
..+++..-+.|+.|+|++|. ..+ .+.+.+..=+.|+.|+++.
T Consensus 62 la~aL~~N~~L~~L~L~~n~--igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTA--ISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSC--CBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHhhCCCcCEEEccCCC--CChHHHHHHHHHHhcCCccCeEecCC
Confidence 34445555666666666665 322 2334444446666666664
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=0.3 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=8.6
Q ss_pred cCcCCccceeeEEeec
Q 037964 59 LGRLPNLQSLKIFEDL 74 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~ 74 (202)
+..+++|+.|+|.+|.
T Consensus 51 f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 51 LDALPALRTAHLGANP 66 (130)
T ss_dssp GGGCTTCCEEECCSSC
T ss_pred hhhccccCEEEecCCC
Confidence 4455555555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 202 | |||
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.77 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.72 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.67 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.61 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.58 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.56 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.55 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.45 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.42 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.34 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.33 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.26 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.25 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.2 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.2 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.19 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.15 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.02 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.0 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.99 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.95 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.78 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.69 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.59 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.54 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.52 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.04 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.83 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 97.61 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 97.51 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.34 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.61 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.22 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.84 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.12 |
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.3e-19 Score=133.81 Aligned_cols=184 Identities=19% Similarity=0.116 Sum_probs=141.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccc-cccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPG-KYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
++.++++||..+. +++++|++++ |....+| ..+.++++|++|+..+.... ++. ++.+++|+.|++++|+ ..
T Consensus 18 ~~~~L~~iP~~lp--~~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~---l~ 90 (266)
T d1p9ag_ 18 DKRNLTALPPDLP--KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ---LQ 90 (266)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC---CS
T ss_pred cCCCCCeeCcCcC--cCCCEEECcC-CcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccc---cc
Confidence 4567889997653 5899999999 5544455 55889999999987666545 555 7889999999999996 34
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCc
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR 156 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 156 (202)
..+..+..+++|+.|+++++.- ..+ .... +.+++.|++.+|.+...+...+..+++|+.+++++|.+...
T Consensus 91 ~~~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~-l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 91 SLPLLGQTLPALTVLDVSFNRL------TSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp SCCCCTTTCTTCCEEECCSSCC------CCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred cccccccccccccccccccccc------ceeecccccc-ccccccccccccccceeccccccccccchhccccccccccc
Confidence 4566788899999999986320 011 3445 78899999999999888888888899999999998877542
Q ss_pred eEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 157 KLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
. +.....+++|++|++++|. ++.++.....+++|+.|++++.|
T Consensus 164 ~-~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 164 P-AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp C-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred C-ccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence 2 2234568899999999988 77887777778889999998765
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.72 E-value=1e-18 Score=134.55 Aligned_cols=186 Identities=16% Similarity=0.129 Sum_probs=131.9
Q ss_pred cccHHHhccccccEEEeCce-eeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHH
Q 037964 8 HTPEDIWKMHKLRHLNFGYI-KLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSK 83 (202)
Q Consensus 8 ~lp~~~~~l~~L~~L~l~~~-~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (202)
.+|.+++++++|++|+++++ +..+.+|.+++++++|++|+..+.... +.. +.++++|+.+++..|. ....+|.
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~~l~l~~N~--~~~~~p~ 143 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNA--LSGTLPP 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSE--EESCCCG
T ss_pred CCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccc-ccchhhhccccccccc--ccccCch
Confidence 68999999999999999873 457789999999999999986655433 444 7778888888888876 6667777
Q ss_pred HhccCCCccEEEeecCc------chhh-c------------------------------------hhccc--ccccCCCC
Q 037964 84 SLCELRCLDSLKLVNES------NMLG-I------------------------------------LQIDI--AEYQFPQS 118 (202)
Q Consensus 84 ~l~~l~~L~~L~l~~~~------~~~~-~------------------------------------~~~~~--~~~~~l~~ 118 (202)
.+++++.++.++++++. +.+. + ..+.+ .... +++
T Consensus 144 ~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~-~~~ 222 (313)
T d1ogqa_ 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS-DKN 222 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCT-TSC
T ss_pred hhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 88888888888877631 1000 0 11111 2344 677
Q ss_pred ccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCcc-ceeeCCCccccccEEee
Q 037964 119 LTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLD-EWTMGTKATWKLEHLII 197 (202)
Q Consensus 119 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~i 197 (202)
++.+++.++.+... +..++.+++|+.|++++|.+.+.. |...+.+++|++|++++|. +. .+| ..+.+++|+.+++
T Consensus 223 l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~i-P~~l~~L~~L~~L~Ls~N~-l~g~iP-~~~~L~~L~~l~l 298 (313)
T d1ogqa_ 223 TQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNN-LCGEIP-QGGNLQRFDVSAY 298 (313)
T ss_dssp CSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECCSSE-EEEECC-CSTTGGGSCGGGT
T ss_pred cccccccccccccc-ccccccccccccccCccCeecccC-ChHHhCCCCCCEEECcCCc-ccccCC-CcccCCCCCHHHh
Confidence 88888888877665 346777888888888888776543 5556678888888888887 44 444 3356777777777
Q ss_pred ecCC
Q 037964 198 NPCA 201 (202)
Q Consensus 198 ~~c~ 201 (202)
.+++
T Consensus 299 ~~N~ 302 (313)
T d1ogqa_ 299 ANNK 302 (313)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 6653
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3e-17 Score=124.57 Aligned_cols=190 Identities=20% Similarity=0.111 Sum_probs=125.4
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccC---ch-hHHHcCcCCccceeeEEeecC
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS---SC-TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~---~~-~~~~l~~l~~L~~L~l~~~~~ 75 (202)
|++|+++.+|+ ++.++++|++|+++++......+..+..+..++.+...... .. +.. ++++++|+.|++..+.
T Consensus 39 Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~~~l~~L~~L~l~~n~- 116 (284)
T d1ozna_ 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCG- 116 (284)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSC-
T ss_pred CcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchh-hcccccCCEEecCCcc-
Confidence 35666777764 46777777777777733333333334555555555432221 11 444 7788888888888776
Q ss_pred chHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
.....+..+...++|+.+++.++. +.+.. .+.. .++|+.|++++|++...++.++.++++|+.+++++|..
T Consensus 117 -~~~~~~~~~~~~~~L~~l~l~~N~-----l~~i~~~~f~~-~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l 189 (284)
T d1ozna_ 117 -LQELGPGLFRGLAALQYLYLQDNA-----LQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (284)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -cccccccccchhcccchhhhcccc-----ccccChhHhcc-ccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence 333344566667788888886532 11100 3555 77899999999998888788888999999999987777
Q ss_pred CCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecCC
Q 037964 154 SRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~ 201 (202)
.+. .+...+.+++|+.|++++|. +..++. ..+.+++|++|++++.|
T Consensus 190 ~~i-~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 190 AHV-HPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp CEE-CTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccc-ChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCCC
Confidence 542 23445678899999999988 554433 34568889999988753
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.8e-16 Score=116.40 Aligned_cols=163 Identities=21% Similarity=0.136 Sum_probs=129.9
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.+|.++.+|. ++.++++|++|++++ |....+|. ++.+++|++|+..+.... +.. +..+++|+.|+++++. .
T Consensus 38 Ls~N~i~~l~~~~f~~l~~L~~L~L~~-N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~l~~~~--~ 112 (266)
T d1p9ag_ 38 LSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV-DGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNR--L 112 (266)
T ss_dssp CTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC-CSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSC--C
T ss_pred CcCCcCCCcCHHHhhcccccccccccc-cccccccc-ccccccccccccccccccccccc-cccccccccccccccc--c
Confidence 46789999985 689999999999999 55556664 578899999986665544 555 8899999999999987 5
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
....+..+..+.+++.|++.++. -..+ .+.. +++++.+++++|++...++..++.+++|++|++++|.+.
T Consensus 113 ~~~~~~~~~~l~~l~~L~l~~n~------l~~l~~~~~~~-l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~ 185 (266)
T d1p9ag_ 113 TSLPLGALRGLGELQELYLKGNE------LKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (266)
T ss_dssp CCCCSSTTTTCTTCCEEECTTSC------CCCCCTTTTTT-CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ceeeccccccccccccccccccc------cceeccccccc-cccchhcccccccccccCccccccccccceeecccCCCc
Confidence 55555677788999999997632 0011 3455 889999999999999988888999999999999988875
Q ss_pred CceEEEcCCCCCcccEEEecccc
Q 037964 155 RRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
. ++.....+++|+.|++++|+
T Consensus 186 ~--lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 186 T--IPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp C--CCTTTTTTCCCSEEECCSCC
T ss_pred c--cChhHCCCCCCCEEEecCCC
Confidence 2 45555678999999999987
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=2.7e-15 Score=108.89 Aligned_cols=165 Identities=23% Similarity=0.193 Sum_probs=128.3
Q ss_pred hccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 14 WKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
..+.+|++|++++ +....++ ++..+++|++|+....... .+. ++++++|++|++++|+ . ..++ .+..+++|+
T Consensus 43 ~~L~~L~~L~l~~-~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~--i-~~l~-~l~~l~~L~ 115 (210)
T d1h6ta2 43 NELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK--V-KDLS-SLKDLKKLK 115 (210)
T ss_dssp HHHHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--C-CCGG-GGTTCTTCC
T ss_pred HHhcCccEEECcC-CCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccc--c-cccc-ccccccccc
Confidence 4578899999999 5545554 5888999999986666555 556 8899999999999986 3 3344 588899999
Q ss_pred EEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEE
Q 037964 93 SLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171 (202)
Q Consensus 93 ~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 171 (202)
.|++.++. ...+ .+.. ++.++.+++.++.+.. ...+..+++|+.+++++|.+.+ ++ ....+++|+.|
T Consensus 116 ~L~l~~~~------~~~~~~l~~-l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~--i~-~l~~l~~L~~L 183 (210)
T d1h6ta2 116 SLSLEHNG------ISDINGLVH-LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IV-PLAGLTKLQNL 183 (210)
T ss_dssp EEECTTSC------CCCCGGGGG-CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCCEE
T ss_pred cccccccc------ccccccccc-cccccccccccccccc--cccccccccccccccccccccc--cc-cccCCCCCCEE
Confidence 99997632 1111 4666 8899999999999876 4567789999999999887754 22 35679999999
Q ss_pred EeccccCccceeeCCCccccccEEeeec
Q 037964 172 HLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 172 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
++++|. ++.++ ....+++|+.|++++
T Consensus 184 ~Ls~N~-i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 184 YLSKNH-ISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp ECCSSC-CCBCG-GGTTCTTCSEEEEEE
T ss_pred ECCCCC-CCCCh-hhcCCCCCCEEEccC
Confidence 999997 77765 346689999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=3.7e-15 Score=107.25 Aligned_cols=170 Identities=19% Similarity=0.182 Sum_probs=127.6
Q ss_pred CccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHH
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLS 82 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (202)
+.+++.+. ...+.++++|++++ +....++ +++.+++|++|+..+.... +.. ++++++|++|+++.|. ...++
T Consensus 28 ~~~~~~~~-~~~l~~l~~L~l~~-~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~---~~~~~ 100 (199)
T d2omxa2 28 TNVTDTVS-QTDLDQVTTLQADR-LGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ---IADIT 100 (199)
T ss_dssp SSTTSEEC-HHHHTTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCCG
T ss_pred CCCCCccC-HHHhcCCCEEECCC-CCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccc---ccccc
Confidence 34444432 35688999999999 5545554 5888999999987666544 556 8999999999999986 22233
Q ss_pred HHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEc
Q 037964 83 KSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACC 161 (202)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 161 (202)
.++.+++|+.|+++++.. ..+ .+.. +++|+.|++++|++.. ++.+..+++|+.|++.+|.+.+- + .
T Consensus 101 -~l~~l~~L~~L~l~~~~~------~~~~~~~~-l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l--~-~ 167 (199)
T d2omxa2 101 -PLANLTNLTGLTLFNNQI------TDIDPLKN-LTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL--K-P 167 (199)
T ss_dssp -GGTTCTTCSEEECCSSCC------CCCGGGTT-CTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--G-G
T ss_pred -cccccccccccccccccc------ccccccch-hhhhHHhhhhhhhhcc--cccccccccccccccccccccCC--c-c
Confidence 488999999999976321 111 4667 8999999999999875 45688999999999998877542 2 3
Q ss_pred CCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 162 SGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 162 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
.+++++|+.|++++|. ++.++. ...+++|++|
T Consensus 168 l~~l~~L~~L~ls~N~-i~~i~~-l~~L~~L~~L 199 (199)
T d2omxa2 168 LANLTTLERLDISSNK-VSDISV-LAKLTNLESL 199 (199)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred ccCCCCCCEEECCCCC-CCCCcc-ccCCCCCCcC
Confidence 5789999999999997 777653 3567888775
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=3.6e-15 Score=109.37 Aligned_cols=172 Identities=18% Similarity=0.150 Sum_probs=116.2
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
...+.+|++|++.+ +....++ +++.+++|++|+..+.... +.. +.++++|+++++.++. .. .+ ..++.+++|
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~--~~-~i-~~l~~l~~L 109 (227)
T d1h6ua2 37 QADLDGITTLSAFG-TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--LK-NV-SAIAGLQSI 109 (227)
T ss_dssp HHHHHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--CS-CC-GGGTTCTTC
T ss_pred HHHcCCcCEEECCC-CCCCcch-hHhcCCCCcEeecCCceeecccc-cccccccccccccccc--cc-cc-ccccccccc
Confidence 45677777777777 4444453 5777777777765554444 445 7777777777777765 21 12 246677777
Q ss_pred cEEEeecCcc-hh-hc----------hh-ccc----ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 92 DSLKLVNESN-ML-GI----------LQ-IDI----AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 92 ~~L~l~~~~~-~~-~~----------~~-~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
+.++++.+.. .. .+ +. ..+ .+.. .++|+.|++.+|.+... ..++++++|++|++++|.+.
T Consensus 110 ~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~ 186 (227)
T d1h6ua2 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAG-LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS 186 (227)
T ss_dssp CEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG-CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred cccccccccccccchhccccchhhhhchhhhhchhhhhcc-ccccccccccccccccc--hhhcccccceecccCCCccC
Confidence 7777765210 00 00 01 111 3455 78899999999988753 45889999999999988775
Q ss_pred CceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 155 RRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
+ ++ ..+.+++|++|++++|. ++.++. ...+++|+.|++++
T Consensus 187 ~--l~-~l~~l~~L~~L~Ls~N~-lt~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 187 D--IS-PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp C--CG-GGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEE
T ss_pred C--Ch-hhcCCCCCCEEECcCCc-CCCCcc-cccCCCCCEEEeeC
Confidence 4 22 35678999999999996 777653 46789999999975
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.58 E-value=5.2e-15 Score=112.99 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=59.2
Q ss_pred ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-----
Q 037964 111 AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG----- 185 (202)
Q Consensus 111 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----- 185 (202)
.+.. ++.++.|++++|++...++..+.++++|++|++++|.+.. ++.....+++|+.|++++|. ++.++..
T Consensus 190 ~~~~-~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~ 265 (305)
T d1xkua_ 190 SLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP 265 (305)
T ss_dssp GGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS
T ss_pred Hhhc-cccccccccccccccccccccccccccceeeecccccccc--cccccccccCCCEEECCCCc-cCccChhhccCc
Confidence 3445 6677788888887777777777788888888888776642 23345567888888888876 6554321
Q ss_pred --CCccccccEEeeecCC
Q 037964 186 --TKATWKLEHLIINPCA 201 (202)
Q Consensus 186 --~~~~~~L~~L~i~~c~ 201 (202)
....++|+.|++.++|
T Consensus 266 ~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 266 GYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp SCCTTSCCCSEEECCSSS
T ss_pred chhcccCCCCEEECCCCc
Confidence 1234677888887765
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.56 E-value=5.1e-16 Score=119.17 Aligned_cols=169 Identities=17% Similarity=0.206 Sum_probs=123.0
Q ss_pred cccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHH
Q 037964 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLS 82 (202)
Q Consensus 6 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (202)
.+.+|.+++++++|++|++++|.+....+..+..+.+|+.++....... |.+ ++++++|+.+++++|. ..+.+|
T Consensus 90 ~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~--l~~~ip 166 (313)
T d1ogqa_ 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR--ISGAIP 166 (313)
T ss_dssp ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC--CEEECC
T ss_pred ccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchh-hccCcccceeeccccc--cccccc
Confidence 3479999999999999999996566667777888888888875554322 667 8899999999998886 555566
Q ss_pred HHhccCCCc-cEEEeec-----------------------C------cchhh----c---------hhccc-ccccCCCC
Q 037964 83 KSLCELRCL-DSLKLVN-----------------------E------SNMLG----I---------LQIDI-AEYQFPQS 118 (202)
Q Consensus 83 ~~l~~l~~L-~~L~l~~-----------------------~------~~~~~----~---------~~~~~-~~~~~l~~ 118 (202)
+.+..+..+ +.++++. + +.... + +.+.+ .+.. +++
T Consensus 167 ~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~-~~~ 245 (313)
T d1ogqa_ 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-SKN 245 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC-CTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 666555444 4444322 0 00000 0 22222 4566 889
Q ss_pred ccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCcc
Q 037964 119 LTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLD 180 (202)
Q Consensus 119 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 180 (202)
++.|++++|++.+..|..++++++|++|++++|.+.|.. | ..+.+++|+.+.+.+|+.+.
T Consensus 246 L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i-P-~~~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-P-QGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC-C-CSTTGGGSCGGGTCSSSEEE
T ss_pred cccccCccCeecccCChHHhCCCCCCEEECcCCcccccC-C-CcccCCCCCHHHhCCCcccc
Confidence 999999999999777889999999999999999987643 4 34568899999898887544
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.7e-15 Score=111.06 Aligned_cols=186 Identities=18% Similarity=0.097 Sum_probs=135.8
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccc-cccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPG-KYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.+++++|..+- +.+++|++++ |....+| ..+.++++|++|+....... +..++..++.++.+....+. ....
T Consensus 20 ~~~L~~iP~~ip--~~~~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~-~~~~ 95 (284)
T d1ozna_ 20 QQGLQAVPVGIP--AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-QLRS 95 (284)
T ss_dssp SSCCSSCCTTCC--TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT-TCCC
T ss_pred CCCCCccCCCCC--CCCCEEECcC-CcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc-cccc
Confidence 456788887553 5789999999 4444555 45899999999986554433 33337778888888766443 1233
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCc
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR 156 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 156 (202)
.-+..++++++|+.|+++.+.- ..+ .... ..+|+.+++.+|+++..+..++..+++|+.|++++|.+..-
T Consensus 96 l~~~~~~~l~~L~~L~l~~n~~------~~~~~~~~~~-~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l 168 (284)
T d1ozna_ 96 VDPATFHGLGRLHTLHLDRCGL------QELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (284)
T ss_dssp CCTTTTTTCTTCCEEECTTSCC------CCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccchhhcccccCCEEecCCccc------ccccccccch-hcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence 3366789999999999987431 011 3455 78999999999999998888899999999999998887531
Q ss_pred eEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecCC
Q 037964 157 KLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~ 201 (202)
. +....++++|+.+++.+|. +..+ +.....+++|++|+++++.
T Consensus 169 ~-~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 212 (284)
T d1ozna_ 169 P-ERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN 212 (284)
T ss_dssp C-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred c-hhhhccccccchhhhhhcc-ccccChhHhhhhhhcccccccccc
Confidence 1 2234568899999999998 5544 3445678999999998764
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.2e-15 Score=115.67 Aligned_cols=184 Identities=17% Similarity=0.124 Sum_probs=106.4
Q ss_pred HhccccccEEEeCceeecc-ccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccC
Q 037964 13 IWKMHKLRHLNFGYIKLHA-HPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCEL 88 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 88 (202)
.....+|++|++++|.... .++..+..+++|++|........ +.. ++++++|++|+++++.......+......+
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~ 120 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHH
Confidence 3456688888888854432 24444677888888876555322 656 888888888888876533334455556677
Q ss_pred CCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCC--CCCCCCCccc-cCCCCcceEEeccCc-cCCceEEEcCC
Q 037964 89 RCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNT--KLKDDPMPTL-EKLPHLLVLKLKQNS-FSRRKLACCSG 163 (202)
Q Consensus 89 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~--~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~~~ 163 (202)
++|+.|+++++..+.+ .+.. .+....++|+.|++.++ .+.......+ .++++|++|+++++. +.+.. .....
T Consensus 121 ~~L~~L~ls~c~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~~~l~ 197 (284)
T d2astb2 121 SRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFF 197 (284)
T ss_dssp TTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGG
T ss_pred Hhcccccccccccccc--ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh-hhhhc
Confidence 8888888876432111 0000 11221456777777654 2333222222 356777777776544 33222 22334
Q ss_pred CCCcccEEEeccccCccce-eeCCCccccccEEeeecC
Q 037964 164 GFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 164 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c 200 (202)
.+++|++|++++|..+..- ......+|+|++|++.+|
T Consensus 198 ~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 5677777777776655432 122345677777777666
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=1.2e-13 Score=99.26 Aligned_cols=150 Identities=22% Similarity=0.230 Sum_probs=113.3
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.++.+.+++ ++..+++|++|++++ |....++. ++++++|++|+....... .+. ++++++|+.++++++. ...
T Consensus 48 ~~~~i~~l~-~l~~l~nL~~L~Ls~-N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~--~~~- 120 (199)
T d2omxa2 48 DRLGIKSID-GVEYLNNLTQINFSN-NQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ--ITD- 120 (199)
T ss_dssp TTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSC--CCC-
T ss_pred CCCCCCCcc-ccccCCCcCcCcccc-ccccCccc-ccCCcccccccccccccccccc-cccccccccccccccc--ccc-
Confidence 467777775 488999999999999 55444543 889999999986665555 666 8999999999999886 222
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLA 159 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 159 (202)
...+..+++|+.|+++++. -..+ .+.. +++++.|++.+|++... ..++++++|++|++++|.+.+ ++
T Consensus 121 -~~~~~~l~~L~~L~l~~n~------l~~~~~l~~-~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~--i~ 188 (199)
T d2omxa2 121 -IDPLKNLTNLNRLELSSNT------ISDISALSG-LTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD--IS 188 (199)
T ss_dssp -CGGGTTCTTCSEEECCSSC------CCCCGGGTT-CTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--CG
T ss_pred -ccccchhhhhHHhhhhhhh------hcccccccc-cccccccccccccccCC--ccccCCCCCCEEECCCCCCCC--Cc
Confidence 2357889999999998632 0011 3566 89999999999998874 468899999999999887654 22
Q ss_pred EcCCCCCcccEE
Q 037964 160 CCSGGFPCLKFL 171 (202)
Q Consensus 160 ~~~~~~~~L~~L 171 (202)
..+.+++|+.|
T Consensus 189 -~l~~L~~L~~L 199 (199)
T d2omxa2 189 -VLAKLTNLESL 199 (199)
T ss_dssp -GGGGCTTCSEE
T ss_pred -cccCCCCCCcC
Confidence 34567777765
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=1.4e-13 Score=99.64 Aligned_cols=155 Identities=24% Similarity=0.174 Sum_probs=117.7
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.++.++.++. +..+++|++|++++ +....++ .++.+++|+.|+..+.... ++. +.++++|+.|++.++. .. .
T Consensus 54 ~~~~i~~l~~-l~~l~~L~~L~L~~-n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~~~--~~-~ 126 (210)
T d1h6ta2 54 NNSDIKSVQG-IQYLPNVTKLFLNG-NKLTDIK-PLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG--IS-D 126 (210)
T ss_dssp TTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC--CC-C
T ss_pred cCCCCCCchh-HhhCCCCCEEeCCC-ccccCcc-ccccCcccccccccccccccccc-cccccccccccccccc--cc-c
Confidence 4677777764 88999999999999 5544555 3688899999986665544 667 9999999999999886 22 2
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
...+..++.++.+++..+. +....++.. +++|+.+++++|++... ..+.++++|+.|++++|.+.. ++
T Consensus 127 -~~~l~~l~~l~~l~~~~n~-----l~~~~~~~~-l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~--l~- 194 (210)
T d1h6ta2 127 -INGLVHLPQLESLYLGNNK-----ITDITVLSR-LTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD--LR- 194 (210)
T ss_dssp -CGGGGGCTTCCEEECCSSC-----CCCCGGGGG-CTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB--CG-
T ss_pred -ccccccccccccccccccc-----ccccccccc-ccccccccccccccccc--ccccCCCCCCEEECCCCCCCC--Ch-
Confidence 2457888999999987532 010004566 89999999999999864 458899999999999887753 33
Q ss_pred cCCCCCcccEEEecc
Q 037964 161 CSGGFPCLKFLHLKS 175 (202)
Q Consensus 161 ~~~~~~~L~~L~l~~ 175 (202)
....+++|++|++++
T Consensus 195 ~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 195 ALAGLKNLDVLELFS 209 (210)
T ss_dssp GGTTCTTCSEEEEEE
T ss_pred hhcCCCCCCEEEccC
Confidence 467789999999863
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=1.8e-13 Score=106.86 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=65.7
Q ss_pred ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccc
Q 037964 111 AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATW 190 (202)
Q Consensus 111 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 190 (202)
.+.. +++++.|++++|++.+. ..+..+++|+.|++++|.+.+ ++ ....+++|++|++++|. +..++. ...++
T Consensus 302 ~~~~-~~~l~~L~ls~n~l~~l--~~l~~l~~L~~L~L~~n~l~~--l~-~l~~l~~L~~L~l~~N~-l~~l~~-l~~l~ 373 (384)
T d2omza2 302 PISN-LKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSD--VS-SLANLTNINWLSAGHNQ-ISDLTP-LANLT 373 (384)
T ss_dssp GGGG-CTTCSEEECCSSCCSCC--GGGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECCSSC-CCBCGG-GTTCT
T ss_pred ccch-hcccCeEECCCCCCCCC--cccccCCCCCEEECCCCCCCC--Ch-hHcCCCCCCEEECCCCc-CCCChh-hccCC
Confidence 3555 88999999999999874 358899999999999887754 22 35678999999999997 766543 46789
Q ss_pred cccEEeeecC
Q 037964 191 KLEHLIINPC 200 (202)
Q Consensus 191 ~L~~L~i~~c 200 (202)
+|++|++++.
T Consensus 374 ~L~~L~L~~N 383 (384)
T d2omza2 374 RITQLGLNDQ 383 (384)
T ss_dssp TCSEEECCCE
T ss_pred CCCEeeCCCC
Confidence 9999999874
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.45 E-value=3.8e-13 Score=98.37 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=108.7
Q ss_pred ccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccE
Q 037964 15 KMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDS 93 (202)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (202)
.+.++..++++.+...... .+..+.+|+.|........ .+. ++++++|++|++++|. ..+ +. .+.++++++.
T Consensus 17 ~l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~ls~n~--i~~-~~-~l~~l~~l~~ 89 (227)
T d1h6ua2 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ--ITD-LA-PLKNLTKITE 89 (227)
T ss_dssp HHHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC--CCC-CG-GGTTCCSCCE
T ss_pred HHHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcchh-HhcCCCCcEeecCCce--eec-cc-cccccccccc
Confidence 3444455566652222222 2466788888876665555 666 8999999999999987 333 22 3889999999
Q ss_pred EEeecCcchhhchhccc-ccccCCCCcc----------------------EEEeeCCCCCCCCCccccCCCCcceEEecc
Q 037964 94 LKLVNESNMLGILQIDI-AEYQFPQSLT----------------------HLSLTNTKLKDDPMPTLEKLPHLLVLKLKQ 150 (202)
Q Consensus 94 L~l~~~~~~~~~~~~~~-~~~~~l~~L~----------------------~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 150 (202)
++++++.- ..+ .+.. +++|+ .+.+.++.+.. ...+.+.++|+.|++++
T Consensus 90 l~~~~n~~------~~i~~l~~-l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~ 160 (227)
T d1h6ua2 90 LELSGNPL------KNVSAIAG-LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGN 160 (227)
T ss_dssp EECCSCCC------SCCGGGTT-CTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCS
T ss_pred cccccccc------cccccccc-cccccccccccccccccchhccccchhhhhchhhhhch--hhhhccccccccccccc
Confidence 99987320 011 2333 44444 44444444433 23456778889999987
Q ss_pred CccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 151 NSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+...+. ...+.+++|+.|++++|. +..++. ...+++|++|++++|.
T Consensus 161 n~~~~~---~~l~~l~~L~~L~Ls~n~-l~~l~~-l~~l~~L~~L~Ls~N~ 206 (227)
T d1h6ua2 161 AQVSDL---TPLANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQ 206 (227)
T ss_dssp SCCCCC---GGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSC
T ss_pred cccccc---hhhcccccceecccCCCc-cCCChh-hcCCCCCCEEECcCCc
Confidence 665432 135678999999999986 766643 4568999999999884
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.2e-14 Score=107.11 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=115.0
Q ss_pred ccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc---h-hHHHcCcCCccceeeEEeecCchHHHHHHH
Q 037964 9 TPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS---C-TRDILGRLPNLQSLKIFEDLSHYQSVLSKS 84 (202)
Q Consensus 9 lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~---~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (202)
++..+.++++|++|++++|......+..++.+++|++|+...+.. . .......+++|++|+++++.....+.+...
T Consensus 63 l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~ 142 (284)
T d2astb2 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142 (284)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh
Confidence 445578899999999999554555666788899999998655332 2 334245789999999998753334555555
Q ss_pred hccC-CCccEEEeecCcc-hhhchhccc--ccccCCCCccEEEeeCC-CCCCCCCccccCCCCcceEEeccCc-cCCceE
Q 037964 85 LCEL-RCLDSLKLVNESN-MLGILQIDI--AEYQFPQSLTHLSLTNT-KLKDDPMPTLEKLPHLLVLKLKQNS-FSRRKL 158 (202)
Q Consensus 85 l~~l-~~L~~L~l~~~~~-~~~~~~~~~--~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~ 158 (202)
+... +.|+.|++++... +.+ ..+ .... +++|++|++++| .++...+..+.++++|++|+++++. +.+..
T Consensus 143 ~~~~~~~L~~L~l~~~~~~i~~---~~l~~l~~~-~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~- 217 (284)
T d2astb2 143 VAHVSETITQLNLSGYRKNLQK---SDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET- 217 (284)
T ss_dssp HHHSCTTCCEEECCSCGGGSCH---HHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-
T ss_pred hcccccccchhhhccccccccc---ccccccccc-cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH-
Confidence 6554 7899999986321 100 011 2345 889999999987 4666667788899999999998643 44333
Q ss_pred EEcCCCCCcccEEEecccc
Q 037964 159 ACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~ 177 (202)
......+|+|+.|++++|-
T Consensus 218 l~~L~~~~~L~~L~l~~~~ 236 (284)
T d2astb2 218 LLELGEIPTLKTLQVFGIV 236 (284)
T ss_dssp GGGGGGCTTCCEEECTTSS
T ss_pred HHHHhcCCCCCEEeeeCCC
Confidence 2234568999999999873
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=3.8e-12 Score=96.74 Aligned_cols=186 Identities=19% Similarity=0.208 Sum_probs=113.0
Q ss_pred CccccccHHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHH
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.+++++|+.+. +++++|++++ |....+|+ .+.++++|++|+....... +.. +.++++|+.|++++|+ ..
T Consensus 20 ~~L~~lP~~l~--~~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~-f~~l~~L~~L~l~~n~---l~ 92 (305)
T d1xkua_ 20 LGLEKVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQ---LK 92 (305)
T ss_dssp SCCCSCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSC---CS
T ss_pred CCCCccCCCCC--CCCCEEECcC-CcCCCcChhHhhccccccccccccccccccchhh-hhCCCccCEecccCCc---cC
Confidence 35667776553 5677777777 45455554 4677777777765444333 334 7777777777777664 11
Q ss_pred HHHHHhccCCCccEEEeec------------------------Ccchh-h-----c----------hh-ccc---ccccC
Q 037964 80 VLSKSLCELRCLDSLKLVN------------------------ESNML-G-----I----------LQ-IDI---AEYQF 115 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~------------------------~~~~~-~-----~----------~~-~~~---~~~~~ 115 (202)
.+|... .+.+..|++.. +.... . + +. ..+ ....
T Consensus 93 ~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~- 169 (305)
T d1xkua_ 93 ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 169 (305)
T ss_dssp BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-
T ss_pred cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc-
Confidence 122111 12233333222 10000 0 0 00 001 1222
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
+++++.|++.+|......+..+.+++.+++|++++|.+.+.. +....++++|++|++++|. ++.++.....+++|+.|
T Consensus 170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L 247 (305)
T d1xkua_ 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVV 247 (305)
T ss_dssp CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEE
T ss_pred CCccCEEECCCCcCCCCChhHhhccccccccccccccccccc-cccccccccceeeeccccc-ccccccccccccCCCEE
Confidence 667888888888777776777888888999999877665321 2234467999999999997 88887667779999999
Q ss_pred eeecCC
Q 037964 196 IINPCA 201 (202)
Q Consensus 196 ~i~~c~ 201 (202)
+++++.
T Consensus 248 ~Ls~N~ 253 (305)
T d1xkua_ 248 YLHNNN 253 (305)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 999863
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.33 E-value=4.2e-12 Score=99.00 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=97.8
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCch----
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHY---- 77 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~---- 77 (202)
++.+..+++ ...+++|++|++++ +....++ .+..+++|+.++....... ... ++.+++|+.++++.+....
T Consensus 206 ~n~i~~~~~-~~~~~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~ 281 (384)
T d2omza2 206 NNQISDITP-LGILTNLDELSLNG-NQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPL 281 (384)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCS-SCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGG
T ss_pred CCccCCCCc-ccccCCCCEEECCC-CCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCcc
Confidence 344555544 45566677777766 3333333 3555666666654433322 334 5566666666665554110
Q ss_pred ---------------HHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 78 ---------------QSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 78 ---------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
... ...+..+++++.|+++++. +.+...+.. +++|+.|++++|+++.. ..++++++
T Consensus 282 ~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~-----l~~l~~l~~-l~~L~~L~L~~n~l~~l--~~l~~l~~ 352 (384)
T d2omza2 282 AGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNN-----ISDISPVSS-LTKLQRLFFANNKVSDV--SSLANLTN 352 (384)
T ss_dssp TTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSC-----CSCCGGGGG-CTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred cccccccccccccccccc-ccccchhcccCeEECCCCC-----CCCCccccc-CCCCCEEECCCCCCCCC--hhHcCCCC
Confidence 000 1234555666666665421 111114677 89999999999998863 47899999
Q ss_pred cceEEeccCccCCceEEEcCCCCCcccEEEeccc
Q 037964 143 LLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSM 176 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 176 (202)
|++|++++|.+.+- + ...++++|+.|++++|
T Consensus 353 L~~L~l~~N~l~~l--~-~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 353 INWLSAGHNQISDL--T-PLANLTRITQLGLNDQ 383 (384)
T ss_dssp CCEEECCSSCCCBC--G-GGTTCTTCSEEECCCE
T ss_pred CCEEECCCCcCCCC--h-hhccCCCCCEeeCCCC
Confidence 99999998887652 2 3678999999999987
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.26 E-value=4.8e-12 Score=90.11 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccc-cccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPG-KYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+++++.||.++. +++++|++++|.....++ ..++.+++|++|+..+.... +.+++..+++|++|++++|+ ...
T Consensus 17 ~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~--l~~ 92 (192)
T d1w8aa_ 17 GRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK--IKE 92 (192)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC--CCE
T ss_pred CCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc--ccc
Confidence 445566665442 466666666633333232 23455566666554333322 22225555666666666554 111
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
.-+. .+.. +++|+.|+|++|++...++.+|..+++|+++++++|.+.
T Consensus 93 l~~~---------------------------~F~~-l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 93 ISNK---------------------------MFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECSS---------------------------SSTT-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCHH---------------------------HHhC-CCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 1111 3555 777777777788777777777778888888888777654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.8e-13 Score=94.17 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=47.2
Q ss_pred ccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeec
Q 037964 7 DHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 7 ~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 74 (202)
.+.|. +.+..++++|++++ +....++.....+++|+.|+..++... .+. +..+++|+.|++++|.
T Consensus 9 ~~~~~-~~n~~~lr~L~L~~-n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~ 74 (162)
T d1a9na_ 9 EQAAQ-YTNAVRDRELDLRG-YKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNR 74 (162)
T ss_dssp HTSCE-EECTTSCEEEECTT-SCCCSCCCGGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSC
T ss_pred hhhHh-ccCcCcCcEEECCC-CCCCccCccccccccCCEEECCCCCCCccCC-cccCcchhhhhccccc
Confidence 33443 56778899999999 666666665567788888876665544 555 7788888888888886
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=7.7e-13 Score=91.89 Aligned_cols=129 Identities=13% Similarity=0.034 Sum_probs=83.1
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+.+..++|+|++++|+ ...++..+..+++|+.|+++++. -..+ .+.. +++|+.|++++|++...+...+
T Consensus 14 ~~n~~~lr~L~L~~n~---I~~i~~~~~~l~~L~~L~Ls~N~------i~~l~~~~~-l~~L~~L~ls~N~i~~l~~~~~ 83 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYK---IPVIENLGATLDQFDAIDFSDNE------IRKLDGFPL-LRRLKTLLVNNNRICRIGEGLD 83 (162)
T ss_dssp EECTTSCEEEECTTSC---CCSCCCGGGGTTCCSEEECCSSC------CCEECCCCC-CSSCCEEECCSSCCCEECSCHH
T ss_pred ccCcCcCcEEECCCCC---CCccCccccccccCCEEECCCCC------CCccCCccc-CcchhhhhcccccccCCCcccc
Confidence 4556677777777775 23334445566777777776532 0011 3556 7888888888888887766666
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCcccee----eCCCccccccEEeee
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWT----MGTKATWKLEHLIIN 198 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~~L~~L~i~ 198 (202)
..+++|+.|++++|.+..-.-......+++|++|++++|+ +...+ .....+|+|+.|+-.
T Consensus 84 ~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 84 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence 7888888888888776542101234567888888888887 44332 123457888887643
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.5e-11 Score=90.28 Aligned_cols=189 Identities=16% Similarity=0.109 Sum_probs=98.5
Q ss_pred CccccccHHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHH
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.+++++|.++- +++++|++++ +....+|. .+.++++|++|+....... +..++..+++++++.+..+. ....
T Consensus 18 ~~l~~iP~~l~--~~l~~L~Ls~-n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n-~l~~ 93 (242)
T d1xwdc1 18 SKVTEIPSDLP--RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLLY 93 (242)
T ss_dssp CSCSSCCSCSC--SCCSEEEEES-CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT-TCCE
T ss_pred CCCCCcCCCCC--CCCCEEECcC-CcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc-cccc
Confidence 34556665432 3566677766 34344443 3566666666664443321 22225566666666655422 0233
Q ss_pred HHHHHhccCCCccEEEeecCc-chhh-------c-------hhc-cc------ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 80 VLSKSLCELRCLDSLKLVNES-NMLG-------I-------LQI-DI------AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~-~~~~-------~-------~~~-~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
..+..+..+++|+.+++..+. .... + ..+ .+ .+..+...++.+++.++++...+...+
T Consensus 94 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~ 173 (242)
T d1xwdc1 94 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF 173 (242)
T ss_dssp ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT
T ss_pred cccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence 334455666666666665521 0000 0 000 11 222213467778888887776544333
Q ss_pred cCCCCcceEE-eccCccCCceEEE-cCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecC
Q 037964 138 EKLPHLLVLK-LKQNSFSRRKLAC-CSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPC 200 (202)
Q Consensus 138 ~~l~~L~~L~-l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c 200 (202)
..++++.+. +.+|.+.. ++. ...++++|+.|++++|. ++.++.. ...++.|+.+++.++
T Consensus 174 -~~~~l~~~~~l~~n~l~~--l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l 235 (242)
T d1xwdc1 174 -NGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNL 235 (242)
T ss_dssp -TTCCEEEEECTTCTTCCC--CCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESS
T ss_pred -cchhhhcccccccccccc--ccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCC
Confidence 345555554 34343432 222 24568999999999988 7766543 244555666666554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=6.8e-12 Score=92.17 Aligned_cols=171 Identities=19% Similarity=0.170 Sum_probs=105.7
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeecccccc-ccccCCCcceecccccC-c-h--hHHHcCcCCccceeeEEeec
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLS-S-C--TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~-~-~--~~~~l~~l~~L~~L~l~~~~ 74 (202)
+++|+++.+|. ++.++++|++|++++|.....++. .+..+++++++...... . . +.. +..+++|+.+++.++.
T Consensus 36 Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-~~~l~~L~~l~l~~~~ 114 (242)
T d1xwdc1 36 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-FQNLPNLQYLLISNTG 114 (242)
T ss_dssp EESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS-EECCTTCCEEEEESCC
T ss_pred CcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc-ccccccccccccchhh
Confidence 35788999987 589999999999999544444544 47788888888754432 1 2 444 8999999999999986
Q ss_pred CchHHHHH--HHhccCCCccEEEeecC------cchhh--------c-hhc-cc-----ccccCCCCccEEE-eeCCCCC
Q 037964 75 SHYQSVLS--KSLCELRCLDSLKLVNE------SNMLG--------I-LQI-DI-----AEYQFPQSLTHLS-LTNTKLK 130 (202)
Q Consensus 75 ~~~~~~~~--~~l~~l~~L~~L~l~~~------~~~~~--------~-~~~-~~-----~~~~~l~~L~~L~-l~~~~~~ 130 (202)
... .+ ..+..+..+..+..... ...+. + +.+ .+ .... ..+++.+. +.++++.
T Consensus 115 --l~~-~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~ 190 (242)
T d1xwdc1 115 --IKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLE 190 (242)
T ss_dssp --CCS-CCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCC
T ss_pred --hcc-cccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccccc
Confidence 221 11 11222333333322221 00000 0 111 12 1122 44555554 5677888
Q ss_pred CCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCcc
Q 037964 131 DDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLD 180 (202)
Q Consensus 131 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 180 (202)
..+...+.++++|+.|++++|.+.. + +.+.|.++..|..-++..++
T Consensus 191 ~l~~~~f~~l~~L~~L~Ls~N~l~~--l--~~~~~~~l~~L~~l~~~~l~ 236 (242)
T d1xwdc1 191 ELPNDVFHGASGPVILDISRTRIHS--L--PSYGLENLKKLRARSTYNLK 236 (242)
T ss_dssp CCCTTTTTTSCCCSEEECTTSCCCC--C--CSSSCTTCCEEESSSEESSS
T ss_pred cccHHHhcCCCCCCEEECCCCcCCc--c--CHHHHcCCcccccCcCCCCC
Confidence 8877889999999999999888753 2 23457777777655555444
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=2.9e-11 Score=79.99 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=19.4
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceec
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFIS 47 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 47 (202)
++++++.+|. +.++++|++|++++ |....+|.+++.+++|++|+
T Consensus 6 s~n~l~~l~~-l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~ 49 (124)
T d1dcea3 6 AHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQ 49 (124)
T ss_dssp TTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCCCcc-cccCCCCCEEECCC-CccCcchhhhhhhhcccccc
Confidence 3444444442 44455555555555 33333443344444444443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.02 E-value=3.2e-12 Score=91.60 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=50.9
Q ss_pred cccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHH
Q 037964 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKS 84 (202)
Q Consensus 6 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (202)
+..+|.++..+++|++|++++ +....++ .+..+++|+.|+..++... ++.....+++|+.|++++|. .. .+ +.
T Consensus 37 i~~l~~sl~~L~~L~~L~Ls~-n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~--i~-~l-~~ 110 (198)
T d1m9la_ 37 IEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ--IA-SL-SG 110 (198)
T ss_dssp CCCCHHHHHHTTTCCEEECSE-EEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE--CC-CH-HH
T ss_pred hhhhhhHHhcccccceeECcc-cCCCCcc-cccCCccccChhhccccccccccccccccccccccccccc--cc-cc-cc
Confidence 556667788888888888888 4444554 4677777777765443322 11112334567777777775 22 22 23
Q ss_pred hccCCCccEEEeec
Q 037964 85 LCELRCLDSLKLVN 98 (202)
Q Consensus 85 l~~l~~L~~L~l~~ 98 (202)
+..+++|+.|++++
T Consensus 111 ~~~l~~L~~L~L~~ 124 (198)
T d1m9la_ 111 IEKLVNLRVLYMSN 124 (198)
T ss_dssp HHHHHHSSEEEESE
T ss_pred cccccccccccccc
Confidence 55555566666653
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.00 E-value=7.7e-10 Score=84.67 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=27.2
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceec
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFIS 47 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 47 (202)
+++++++++|.. .++|++|++++ |....+|..+ .+|++|+
T Consensus 45 Ls~~~L~~lp~~---~~~L~~L~Ls~-N~l~~lp~~~---~~L~~L~ 84 (353)
T d1jl5a_ 45 LNNLGLSSLPEL---PPHLESLVASC-NSLTELPELP---QSLKSLL 84 (353)
T ss_dssp CTTSCCSCCCSC---CTTCSEEECCS-SCCSSCCCCC---TTCCEEE
T ss_pred eCCCCCCCCCCC---CCCCCEEECCC-CCCcccccch---hhhhhhh
Confidence 456778888863 56888899998 5555777654 3555554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.99 E-value=7.8e-10 Score=78.34 Aligned_cols=106 Identities=20% Similarity=0.101 Sum_probs=78.6
Q ss_pred CccceeeEEeecCchHHH-HHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccC
Q 037964 63 PNLQSLKIFEDLSHYQSV-LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEK 139 (202)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (202)
+++++|++++|. .... .+..++.+++|+.|+++++. +.... .+.. +++|+.|++++|++...++.+|.+
T Consensus 29 ~~l~~L~Ls~N~--i~~~~~~~~f~~l~~L~~L~L~~N~-----i~~~~~~~~~~-~~~L~~L~Ls~N~l~~l~~~~F~~ 100 (192)
T d1w8aa_ 29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQ-----LTGIEPNAFEG-ASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSC-----CCCBCTTTTTT-CTTCCEEECCSCCCCEECSSSSTT
T ss_pred CCCCEEEeCCCC--CcccccccccCCCceEeeeeccccc-----ccccccccccc-ccccceeeeccccccccCHHHHhC
Confidence 578999999997 4443 34567888999999997632 01111 4555 788999999999999888888899
Q ss_pred CCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 140 LPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+++|++|++++|.+..-. +.....+++|++|++++|+
T Consensus 101 l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 101 LHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred CCcccccccCCccccccC-HHHhcCCcccccccccccc
Confidence 999999999988875311 2224567889999999887
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=2.5e-10 Score=75.38 Aligned_cols=100 Identities=21% Similarity=0.216 Sum_probs=54.6
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
|+|++++ +....++ .++++++|++|+..+.... |++ ++.+++|+.|++++|. . ..++
T Consensus 1 R~L~Ls~-n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~--i-~~l~--------------- 59 (124)
T d1dcea3 1 RVLHLAH-KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--L-ENVD--------------- 59 (124)
T ss_dssp SEEECTT-SCCSSCC-CGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSC--C-CCCG---------------
T ss_pred CEEEcCC-CCCCCCc-ccccCCCCCEEECCCCccCcchhh-hhhhhccccccccccc--c-cccC---------------
Confidence 4677777 3333444 3556666666654443333 344 5566666666666554 1 1111
Q ss_pred cCcchhhchhcccccccCCCCccEEEeeCCCCCCCC-CccccCCCCcceEEeccCccC
Q 037964 98 NESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDP-MPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 154 (202)
.+.. +++|+.|++++|++...+ +..+..+++|+.+++++|.+.
T Consensus 60 -------------~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 60 -------------GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp -------------GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred -------------cccc-ccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 1334 566666666666665543 345666777777777766654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.78 E-value=2.3e-09 Score=82.50 Aligned_cols=195 Identities=15% Similarity=0.149 Sum_probs=120.5
Q ss_pred ccccccHHHhccccccEEEeCceeecc----ccccccccCCCcceecccccCc-------h-----hHHHcCcCCcccee
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGYIKLHA----HPGKYCSALENLNFISALHLSS-------C-----TRDILGRLPNLQSL 68 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~~~~~~~-------~-----~~~~l~~l~~L~~L 68 (202)
.+..+..++.+...|+.|++++|.... .+...+...++|+.+....... . ..+++...++|+.|
T Consensus 19 ~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L 98 (344)
T d2ca6a1 19 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 98 (344)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccc
Confidence 345667788889999999999954433 2334466677888877543210 0 23337778999999
Q ss_pred eEEeecC--chHHHHHHHhccCCCccEEEeecCcc---h---h-h-c-------------------hhc-cc--------
Q 037964 69 KIFEDLS--HYQSVLSKSLCELRCLDSLKLVNESN---M---L-G-I-------------------LQI-DI-------- 110 (202)
Q Consensus 69 ~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~---~---~-~-~-------------------~~~-~~-------- 110 (202)
++++|.. .....+...+...++|+.|+++++.- . + . + +.+ .+
T Consensus 99 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l 178 (344)
T d2ca6a1 99 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 178 (344)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred cccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccc
Confidence 9998862 23456777888889999999987420 0 0 0 0 000 00
Q ss_pred --ccccCCCCccEEEeeCCCCCCCC-----CccccCCCCcceEEeccCccCCce---EEEcCCCCCcccEEEeccccCcc
Q 037964 111 --AEYQFPQSLTHLSLTNTKLKDDP-----MPTLEKLPHLLVLKLKQNSFSRRK---LACCSGGFPCLKFLHLKSMLWLD 180 (202)
Q Consensus 111 --~~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~ 180 (202)
.+.. .+.++.|++++|++.... ...+...++|+.|++++|.+.... +......+++|++|++++|. +.
T Consensus 179 ~~~l~~-~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~ 256 (344)
T d2ca6a1 179 AKTFQS-HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LS 256 (344)
T ss_dssp HHHHHH-CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CC
T ss_pred cchhhh-hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc-cC
Confidence 2344 667888888888776432 223556778888888877664322 11123456788888888876 43
Q ss_pred ceee-------CCCccccccEEeeecCC
Q 037964 181 EWTM-------GTKATWKLEHLIINPCA 201 (202)
Q Consensus 181 ~~~~-------~~~~~~~L~~L~i~~c~ 201 (202)
.... .....+.|++|++++|.
T Consensus 257 ~~g~~~l~~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 257 ARGAAAVVDAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred chhhHHHHHHhhhccCCCCCEEECCCCc
Confidence 2110 11234678888888763
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.69 E-value=7.5e-10 Score=78.93 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=71.2
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.+++|++++ .+..+++|++|++++ |....+|.....+++|+.|+....... ++. +.++++|+.|++++|. . .
T Consensus 55 Ls~n~I~~i~-~l~~l~~L~~L~Ls~-N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~L~~N~--i-~ 128 (198)
T d1m9la_ 55 LSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNK--I-T 128 (198)
T ss_dssp CSEEEESCCC-CHHHHTTCCEEECCE-EEECSCSSHHHHHHHCCEEECSEEECCCHHH-HHHHHHSSEEEESEEE--C-C
T ss_pred CcccCCCCcc-cccCCccccChhhcc-ccccccccccccccccccccccccccccccc-ccccccccccccccch--h-c
Confidence 3567888887 499999999999999 666667755555678888876555444 666 8889999999999996 3 2
Q ss_pred HHH--HHhccCCCccEEEeecC
Q 037964 80 VLS--KSLCELRCLDSLKLVNE 99 (202)
Q Consensus 80 ~~~--~~l~~l~~L~~L~l~~~ 99 (202)
.++ ..++.+++|+.|+++++
T Consensus 129 ~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 129 NWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp CHHHHHHHTTTTTCSEEEECSS
T ss_pred cccccccccCCCccceeecCCC
Confidence 233 46888889999988764
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.59 E-value=7e-09 Score=79.69 Aligned_cols=138 Identities=19% Similarity=0.074 Sum_probs=81.7
Q ss_pred CCccceeeEEeecC--chHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC----
Q 037964 62 LPNLQSLKIFEDLS--HYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP---- 133 (202)
Q Consensus 62 l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---- 133 (202)
.+.|+.+.+..+.. .....+...+...+.|+.|+++++.-..+-+...+ .+.. .++|+.|++++|.+....
T Consensus 157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~~~L 235 (344)
T d2ca6a1 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSAL 235 (344)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHH
T ss_pred Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcc-hhhhcccccccccccccccccc
Confidence 45566666655441 12234555566667777777765320000000001 3455 788999999999876432
Q ss_pred CccccCCCCcceEEeccCccCCceEEE-----cCCCCCcccEEEeccccCccce-----eeCC-CccccccEEeeecCC
Q 037964 134 MPTLEKLPHLLVLKLKQNSFSRRKLAC-----CSGGFPCLKFLHLKSMLWLDEW-----TMGT-KATWKLEHLIINPCA 201 (202)
Q Consensus 134 ~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~~-----~~~~-~~~~~L~~L~i~~c~ 201 (202)
...+..+++|++|++++|.+.+..... .....+.|+.|++++|. +..- .... ...+.|++|+++++.
T Consensus 236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 235668899999999988775533211 12346789999999987 5321 1111 246789999987653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.5e-08 Score=69.25 Aligned_cols=100 Identities=21% Similarity=0.128 Sum_probs=54.0
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccC-ch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEE
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLS-SC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLK 95 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (202)
..++.++ +.....|..+..++++++|+..+.. .. +.. |..+++|+.|++++|+ ....-+..|..+++|+.|+
T Consensus 11 ~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N~--l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 11 SGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSG--LRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSC--CCEECTTGGGSCSCCCEEE
T ss_pred CeEEecC-CCCccCcccccCccccCeeecCCCccccccCchh-hccccccCcceeeccc--cCCccccccccccccccee
Confidence 3455555 3444455556566666666543221 11 333 6667777777776665 3333345566667777777
Q ss_pred eecCcchhhchhccc---ccccCCCCccEEEeeCCCCCC
Q 037964 96 LVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKD 131 (202)
Q Consensus 96 l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~ 131 (202)
++++. +. .+ .+. ..+|+.|+|++|++.-
T Consensus 87 Ls~N~-----l~-~l~~~~~~--~~~l~~L~L~~Np~~C 117 (156)
T d2ifga3 87 LSFNA-----LE-SLSWKTVQ--GLSLQELVLSGNPLHC 117 (156)
T ss_dssp CCSSC-----CS-CCCSTTTC--SCCCCEEECCSSCCCC
T ss_pred ccCCC-----Cc-ccChhhhc--cccccccccCCCcccC
Confidence 76432 00 11 222 2367788888887653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=6e-08 Score=66.14 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=74.4
Q ss_pred cceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCC
Q 037964 65 LQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLP 141 (202)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 141 (202)
...++..++. ....|..+..+++|+.|++.++..+ ..+ .+.. +++|+.|++++|++...++.+|.+++
T Consensus 10 ~~~l~c~~~~---~~~~p~~l~~l~~l~~L~l~~n~~l-----~~i~~~~f~~-l~~L~~L~Ls~N~l~~i~~~~f~~l~ 80 (156)
T d2ifga3 10 SSGLRCTRDG---ALDSLHHLPGAENLTELYIENQQHL-----QHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTP 80 (156)
T ss_dssp SSCEECCSSC---CCTTTTTSCSCSCCSEEECCSCSSC-----CEECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred CCeEEecCCC---CccCcccccCccccCeeecCCCccc-----cccCchhhcc-ccccCcceeeccccCCcccccccccc
Confidence 3455555553 4456777888899999999653211 011 4666 89999999999999998888999999
Q ss_pred CcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 142 HLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+|++|++++|.+.. ++...-...+|+.|++++|+
T Consensus 81 ~L~~L~Ls~N~l~~--l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 81 RLSRLNLSFNALES--LSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp CCCEEECCSSCCSC--CCSTTTCSCCCCEEECCSSC
T ss_pred cccceeccCCCCcc--cChhhhccccccccccCCCc
Confidence 99999999888753 22222234579999999987
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.04 E-value=1.1e-05 Score=60.78 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=56.4
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccC-CCccEE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCEL-RCLDSL 94 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l-~~L~~L 94 (202)
.++++|++++ +....+|+. +++|++|+....... +++ .+.+|+.|++.+++... +..+ +.|++|
T Consensus 38 ~~l~~LdLs~-~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~l~~n~l~~-------l~~lp~~L~~L 103 (353)
T d1jl5a_ 38 RQAHELELNN-LGLSSLPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA-------LSDLPPLLEYL 103 (353)
T ss_dssp HTCSEEECTT-SCCSCCCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-------CCSCCTTCCEE
T ss_pred cCCCEEEeCC-CCCCCCCCC---CCCCCEEECCCCCCccccc---chhhhhhhhhhhcccch-------hhhhccccccc
Confidence 4689999999 666678863 467888875443333 222 23577888888776221 1222 358888
Q ss_pred EeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCC
Q 037964 95 KLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKD 131 (202)
Q Consensus 95 ~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 131 (202)
+++++. -..+ .... +++|+.|++.++.+..
T Consensus 104 ~L~~n~------l~~lp~~~~-l~~L~~L~l~~~~~~~ 134 (353)
T d1jl5a_ 104 GVSNNQ------LEKLPELQN-SSFLKIIDVDNNSLKK 134 (353)
T ss_dssp ECCSSC------CSSCCCCTT-CTTCCEEECCSSCCSC
T ss_pred cccccc------cccccchhh-hccceeeccccccccc
Confidence 887532 0011 2344 6777778777776553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=2.9e-07 Score=63.05 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=20.6
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
..++++|+.|++++|+......++..+..+++|+.|+++
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls 99 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS 99 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc
Confidence 456788888888887622222233334444444444443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=2.5e-05 Score=60.80 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=61.0
Q ss_pred ccccEEEeCceeecc-ccccccccCCCcceecccccCch------hHHHcCcCCccceeeEEeecCchHHH----HHHHh
Q 037964 17 HKLRHLNFGYIKLHA-HPGKYCSALENLNFISALHLSSC------TRDILGRLPNLQSLKIFEDLSHYQSV----LSKSL 85 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~~~~~~------~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~l 85 (202)
.+|+.||++++.... .+.+-++.++++++|+..++... ..+++..+++|++|++++|. .... +...+
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~--i~~~~~~~l~~~l 79 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE--LGDVGVHCVLQGL 79 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC--CHHHHHHHHHHTT
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc--CChHHHHHHHHHH
Confidence 367888888843332 22333566777777775554321 33446777888888888776 3322 22333
Q ss_pred cc-CCCccEEEeecCcchhhchhc--cc--ccccCCCCccEEEeeCCCCCC
Q 037964 86 CE-LRCLDSLKLVNESNMLGILQI--DI--AEYQFPQSLTHLSLTNTKLKD 131 (202)
Q Consensus 86 ~~-l~~L~~L~l~~~~~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~ 131 (202)
.. ..+|+.|+++++. +-+ .+ .+ .+.. .++|+.|++++|.+..
T Consensus 80 ~~~~~~L~~L~L~~n~-it~--~~~~~l~~~l~~-~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 80 QTPSCKIQKLSLQNCC-LTG--AGCGVLSSTLRT-LPTLQELHLSDNLLGD 126 (460)
T ss_dssp CSTTCCCCEEECTTSC-CBG--GGHHHHHHHTTS-CTTCCEEECCSSBCHH
T ss_pred hcCCCCCCEEECCCCC-ccc--cccccccchhhc-cccccccccccccchh
Confidence 22 2467777776532 000 00 01 2445 6777777777776654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=2.6e-05 Score=60.64 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=65.6
Q ss_pred CCCccccc--cHHHhccccccEEEeCceeecc----ccccccccCCCcceecccccCch---hH---HHcCc-CCcccee
Q 037964 2 PLSFIDHT--PEDIWKMHKLRHLNFGYIKLHA----HPGKYCSALENLNFISALHLSSC---TR---DILGR-LPNLQSL 68 (202)
Q Consensus 2 ~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~~~~~~~~---~~---~~l~~-l~~L~~L 68 (202)
+.+++++. ..-+..+++++.|++++|.... .++..+..+++|++|+..+.... .. +++.. .++|+.|
T Consensus 10 ~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L 89 (460)
T d1z7xw1 10 QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 89 (460)
T ss_dssp ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE
T ss_pred eCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEE
Confidence 45566553 3346678999999999954321 33445678889999986554422 22 21322 3579999
Q ss_pred eEEeecC--chHHHHHHHhccCCCccEEEeecC
Q 037964 69 KIFEDLS--HYQSVLSKSLCELRCLDSLKLVNE 99 (202)
Q Consensus 69 ~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~ 99 (202)
++++|.. .....++..+...++|++|+++++
T Consensus 90 ~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N 122 (460)
T d1z7xw1 90 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122 (460)
T ss_dssp ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred ECCCCCccccccccccchhhccccccccccccc
Confidence 9998872 123457788889999999999864
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=7.8e-06 Score=55.61 Aligned_cols=70 Identities=27% Similarity=0.122 Sum_probs=31.9
Q ss_pred HHHHhccCCCccEEEeecCc-chhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 81 LSKSLCELRCLDSLKLVNES-NMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
+......+++|+.|+++++. .. +.+-. .+.. +++|+.|++++|.++..+.-...+..+|+.+++.+|.+.
T Consensus 57 l~~~~~~~~~L~~L~Ls~N~i~~---l~~~~~~~~~-l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNNRLYR---LDDMSSIVQK-APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSSCCCC---CSGGGTHHHH-STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred hHHHHHhCCCCCEeeCCCccccC---CchhHHHHhh-CCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 33344456666666666431 00 00000 1223 556666666666655532212223345566666655543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.61 E-value=0.0022 Score=43.15 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.3
Q ss_pred ccccEEEeCc
Q 037964 17 HKLRHLNFGY 26 (202)
Q Consensus 17 ~~L~~L~l~~ 26 (202)
++|+.|++++
T Consensus 15 ~~L~~L~L~~ 24 (167)
T d1pgva_ 15 TDLKEVNINN 24 (167)
T ss_dssp SSCCEEECTT
T ss_pred CCCcEEEeCC
Confidence 3444444443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.22 E-value=0.0012 Score=44.47 Aligned_cols=88 Identities=6% Similarity=-0.059 Sum_probs=52.8
Q ss_pred HHHhccccccEEEeCceeecc----ccccccccCCCcceecccccCch------hHHHcCcCCccceeeEEeecCc----
Q 037964 11 EDIWKMHKLRHLNFGYIKLHA----HPGKYCSALENLNFISALHLSSC------TRDILGRLPNLQSLKIFEDLSH---- 76 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~~~~~~~~------~~~~l~~l~~L~~L~l~~~~~~---- 76 (202)
.++...+.|++|++++|.... .+...+...+.|++|+....... ..+++...++|++|++.+++..
T Consensus 38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~ 117 (167)
T d1pgva_ 38 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 117 (167)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence 345667788999998854322 22233445566777764443211 3444777777888888766411
Q ss_pred -hHHHHHHHhccCCCccEEEeec
Q 037964 77 -YQSVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 77 -~~~~~~~~l~~l~~L~~L~l~~ 98 (202)
....+...+..-+.|+.|++++
T Consensus 118 ~~~~~l~~~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 118 QVEMDMMMAIEENESLLRVGISF 140 (167)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHhCCCccEeeCcC
Confidence 1234566666677777777765
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.84 E-value=0.0099 Score=39.59 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=17.2
Q ss_pred cCcCCccceeeEEeecC--chHHHHHHHhccCCCccEEEeec
Q 037964 59 LGRLPNLQSLKIFEDLS--HYQSVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~ 98 (202)
+...++|++|+++++.. .....+...+...+.++.+++..
T Consensus 42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~ 83 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 83 (166)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcc
Confidence 44445555555555431 11222333344444555555443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.12 E-value=0.004 Score=41.61 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=77.0
Q ss_pred Ccccc-ccHHHhccccccEEEeCcee-ecc----ccccccccCCCcceecccccCch------hHHHcCcCCccceeeEE
Q 037964 4 SFIDH-TPEDIWKMHKLRHLNFGYIK-LHA----HPGKYCSALENLNFISALHLSSC------TRDILGRLPNLQSLKIF 71 (202)
Q Consensus 4 ~~~~~-lp~~~~~l~~L~~L~l~~~~-~~~----~~p~~l~~l~~L~~L~~~~~~~~------~~~~l~~l~~L~~L~l~ 71 (202)
|++.+ +.....+.++|++|++++++ ... .+...+...++|++|+....... ..+++...++++.+++.
T Consensus 3 ~~i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~ 82 (166)
T d1io0a_ 3 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 82 (166)
T ss_dssp CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred ccHHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhc
Confidence 44444 23444677999999999832 211 13334567788999886555321 44547778999999999
Q ss_pred eecCc--hHHHHHHHhccCCCccEEEeecCc-chhhchhc--cc--ccccCCCCccEEEeeCCC
Q 037964 72 EDLSH--YQSVLSKSLCELRCLDSLKLVNES-NMLGILQI--DI--AEYQFPQSLTHLSLTNTK 128 (202)
Q Consensus 72 ~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~ 128 (202)
++... ....+...+...+.|+.+++..+. .+-+ .| .+ .+.. .++|+.|++.++.
T Consensus 83 ~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~--~~~~~La~~L~~-n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 83 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN--NVEMEIANMLEK-NTTLLKFGYHFTQ 143 (166)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH--HHHHHHHHHHHH-CSSCCEEECCCSS
T ss_pred cccccchhHHHHHHHHHhCccccEEeeccCCCcCcH--HHHHHHHHHHHh-CCCcCEEeCcCCC
Confidence 87622 234566788888999988886421 1100 11 11 3556 7899999997764
|