Citrus Sinensis ID: 037988

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
Protein Sequence
WSNDDNEEVTLVDDESELNWDDGRRAVRHIEGGEEVDCEGSEEGDEILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAGVAVGQEFEIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRFVRKEILTSKCRFTFLFLK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccEEEEEcEEEEEEEEccEEEEEEEEEccccEEEEEEEEEcccEEEEEEEccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccEEEEEEEEEcccccccccEEEEEccccccccEEEEEEcccccEEccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEEEEEEEEcEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccccccccccccccccccccccccHHHHcccccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHccccEEEEEccEEcccccEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEEEEcccEEEEEcc
Coil and Loop (DISEMBL)
wsnddneevtlvddeselnwdDGRRAVrhieggeevdcegseegdeilsncesddrehgmlsyseDEQTINKINehnisnyyttnpnevagvavgqEFEIVQHFIRVIKNDNKRFKakclnkgcpwFIYAAQVEYGTKSIIQKLNKVHecngvletKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKlngnytdsYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCrwfmglddchlngpfGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANlrsnhpdiidrnlfwvdvRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWlneyrdkpvlTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRFVRKEILTSKCRFTFLFLK
Flexible Loop (DISEMBL)
wsnddneevtlvddeselnwddgRRAVRhieggeevdcegseegDEILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAGVAVGQEFEIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNhpdiidrnLFWVDVRATSEdewednmkkikiakkdtqAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRysdvrkwirklppivrrklnvsrqegrfvrkeiltskcrftflflk
Low Complexity Region (SEG)
WSNDDNEEVTLVDDESELNWDDGRRAVRHIEGGEEVDCEGSEEGDEILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAGVAVGQEFEIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIkanmkkmyrakkramdkLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRFVRKEILTSKCRFTFLFLK
Disordered region (IsUnstruct)
***********************************************************************KINEHNISNYYTTNPNEVAGVAVGQEFEIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTL*************ELVSNLGIKANMKKMYRA***AMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRFVRKEILTSKCRFTFLFL*
Disordered Region (DISOPRED)
WSNDDNEEVTLVDDESELNWD*********************************************EQTINKINEHNISNYYTTNPNEVAGVAVGQEFEIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRFVRKEILTSKCRFTFLFLK
Disordered Region (DISEMBL)
*************DESELNWDDGRRAVRHIEGGE***********EILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAGVAVGQEFEIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRFVRKEILTSKCRFTFLFLK
Disordered Region (DISPRO)
******EEVTLVDDE******************************EILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAGVAVGQEFEIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRFVRKEILTSKCRFTFLFLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WSNDDNEEVTLVDDESELNWDDGRRAVRHIEGGEEVDCEGSEEGDEILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAGVAVGQEFEIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRFVRKEILTSKCRFTFLFLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	468
242082275	846	hypothetical protein SORBIDRAFT_07g02782	0.726	0.401	0.305	7e-40
31432298	1005	transposon protein, putative, Mutator su	0.732	0.341	0.295	3e-39
125553424	1005	hypothetical protein OsI_21092 [Oryza sa	0.732	0.341	0.292	6e-39
356576716	750	PREDICTED: uncharacterized protein LOC10	0.850	0.530	0.257	2e-37
225452988	749	PREDICTED: uncharacterized protein LOC10	0.880	0.550	0.256	5e-37
359479587	752	PREDICTED: uncharacterized protein LOC10	0.775	0.482	0.259	9e-37
6175165	757	Mutator-like transposase [Arabidopsis th	0.741	0.458	0.267	9e-37
449449645	770	PREDICTED: uncharacterized protein LOC10	0.758	0.461	0.262	1e-36
224115958	572	predicted protein [Populus trichocarpa]	0.758	0.620	0.265	1e-36
357127783	1047	PREDICTED: uncharacterized protein LOC10	0.722	0.322	0.256	1e-36

>gi|242082275|ref|XP_002445906.1| hypothetical protein SORBIDRAFT_07g027820 [Sorghum bicolor] gi|241942256|gb|EES15401.1| hypothetical protein SORBIDRAFT_07g027820 [Sorghum bicolor]

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 189/403 (46%), Gaps = 63/403 (15%)

Query: 105 IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKS---IIQKLNKVHECNGVLETKEASY 161
           I+  KND KR +A C  KGCPW ++A+   Y +KS    I   N  H C  VL+ K  S 
Sbjct: 293 IKFPKNDKKRLRAVCSWKGCPWLVHAS---YNSKSDWFQIVTYNPNHACCPVLKNKRLST 349

Query: 162 KWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQR 221
             I  ++E T++ NP    +AMK+ +  ++G++ ++  + RAK + + K+    +  Y R
Sbjct: 350 ARICDKYESTIKANPAWKARAMKETIQEDMGVEVSLTMVKRAKVKVIKKVLDARSGEYSR 409

Query: 222 LRDYTQILRHRNLDVLVKMKF---------------VSALKNAFINGCRWFMGLDDCHLN 266
           L DY   L+  N    V +                 + A +  F++GCR  +GLD C L 
Sbjct: 410 LFDYALELKRSNPGSSVHIALDPDEDEHVFHRLYICLDACRRGFLDGCRRVIGLDGCFLK 469

Query: 267 GPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWF---------------------- 304
           GP  G LL A+  DA N+ +PIA  + E E    WKWF                      
Sbjct: 470 GPMKGELLSAIGRDANNQIYPIAWAVVEYENLSSWKWFLGHRQKDLKIPYGAAGWVFLTD 529

Query: 305 -----------FVILSEH--CARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKK 351
                      F  ++EH  CARH++AN R  H     +  FW   +A++E  +  N  K
Sbjct: 530 KQKGLLKAIDHFFPMAEHRMCARHIYANWRKKHRLQEYQKRFWKIAKASNEMLF--NYYK 587

Query: 352 IKIAKKDTQAAYDYLIKIDKKEWARYDIK----VDHVTNNLTESWNNWLNEYRDKPVLTL 407
            K+A K T   +D L K D     R   K     + V NN++ES+N+W+ + R KP++T+
Sbjct: 588 NKLAAK-TPKGWDDLQKTDPVHGCRAFFKEGSNCESVDNNVSESFNSWIIDARFKPIITM 646

Query: 408 TEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRF 450
            E I   V + + K  S+  +W   + P + RK+N  R   ++
Sbjct: 647 LEDICIMVTRRIQKNRSNSERWTMGICPNILRKVNKIRHATQY 689

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31432298|gb|AAP53948.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 180/400 (45%), Gaps = 57/400 (14%)

Query: 105 IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWI 164
           IR +KN+ KR +A C  KGCPW +YA+         I   N  H C   L+ K  S + I
Sbjct: 313 IRYVKNEQKRIRAVCRWKGCPWLLYASHNSRSDWFQIVTYNPNHACCPELKNKRLSTRRI 372

Query: 165 ASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRD 224
             ++E T++ NP    + MK+ +  ++G+  ++  + RAK   M K+    T  Y +L D
Sbjct: 373 CDRYESTIKANPSWKAREMKETVQEDMGVDVSITMIKRAKTHVMKKIMDTQTGEYSKLFD 432

Query: 225 YTQILRHRNLDVLVKMKF---------------VSALKNAFINGCRWFMGLDDCHLNGPF 269
           Y   L+  N    V +                   A +  F+ GCR  +GLD C L GP 
Sbjct: 433 YALKLQRSNPGNSVHIALDPEEEDHVFQRFYVCFDACRRGFLEGCRRIIGLDGCFLKGPL 492

Query: 270 GGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVIL--------------------- 308
            G LL A+  DA N+ +PIA  + E E    W WF   L                     
Sbjct: 493 KGELLSAIGRDANNQLYPIAWAVVEYENKDSWNWFLGHLQKDINIPVGAAGWVFITDQQK 552

Query: 309 ------------SEH--CARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKI 354
                       +EH  CARH++AN R  H     +  FW   +A +E  +  N  K K+
Sbjct: 553 GLLSIVSTLFPFAEHRMCARHIYANWRKKHRLQEYQKRFWKIAKAPNEQLF--NHYKRKL 610

Query: 355 AKKDTQAAYDYLIKIDKKEWARYDIKV----DHVTNNLTESWNNWLNEYRDKPVLTLTEF 410
           A K T   +  L K +   W+R   ++    + V NN++ES+N+W+ E R KP++T+ E 
Sbjct: 611 AAK-TPRGWQDLEKTNPIHWSRAWFRLGSNCESVDNNMSESFNSWIIESRFKPIITMLED 669

Query: 411 IKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRF 450
           I+  V + + +  S+  +W   + P + RK N  R   +F
Sbjct: 670 IRIQVTRRIQENRSNSERWTMTVCPNIIRKFNKIRHRTQF 709

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125553424|gb|EAY99133.1| hypothetical protein OsI_21092 [Oryza sativa Indica Group]

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 179/400 (44%), Gaps = 57/400 (14%)

Query: 105 IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWI 164
           IR +KN+ KR +A C  KGCPW +YA+         I   N  H C   L+ K  S + I
Sbjct: 313 IRYVKNEQKRIRAVCRWKGCPWLLYASHNSRSDWFQIVTYNPNHACCPELKNKRLSTRRI 372

Query: 165 ASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRD 224
             ++E T++ NP    + MK+ +  ++G+  ++  + RAK   M K+       Y +L D
Sbjct: 373 CDRYESTIKANPSWKAREMKETVQEDMGVDVSITMIKRAKAHVMKKIMDTQIGEYSKLFD 432

Query: 225 YTQILRHRNLDVLVKMKF---------------VSALKNAFINGCRWFMGLDDCHLNGPF 269
           Y   L+  N    V +                   A +  F+ GCR  +GLD C L GP 
Sbjct: 433 YALELQRSNPGTSVHVALDPEEEDHVFQRFYVCFDACRRGFLEGCRRIIGLDGCFLKGPL 492

Query: 270 GGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVIL--------------------- 308
            G LL A+  DA N+ +PIA  + E E    W WF   L                     
Sbjct: 493 KGELLSAIGRDANNQLYPIAWAVVEYENKDSWNWFLGHLQKDINIPVGAAGWVFITDQQK 552

Query: 309 ------------SEH--CARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKI 354
                       +EH  CARH++AN R  H     +  FW   +A +E  +  N  K K+
Sbjct: 553 GLLSIVSTLFPFAEHRMCARHIYANWRKKHRLQEYQKRFWKIAKAPNEQLF--NHYKRKL 610

Query: 355 AKKDTQAAYDYLIKIDKKEWARYDIKV----DHVTNNLTESWNNWLNEYRDKPVLTLTEF 410
           A K T   +  L K +   W+R   ++    + V NN++ES+N+W+ E R KP++T+ E 
Sbjct: 611 AAK-TPRGWQDLEKTNPIHWSRAWFRLGSNCESVDNNMSESFNSWIIESRFKPIITMLED 669

Query: 411 IKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQEGRF 450
           I+  V + + +  S+  +W   + P + RK N  R   +F
Sbjct: 670 IRIQVTRRIQENRSNSERWTMTVCPNIIRKFNKIRHRTQF 709

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576716|ref|XP_003556476.1| PREDICTED: uncharacterized protein LOC100811471 isoform 1 [Glycine max] gi|356576718|ref|XP_003556477.1| PREDICTED: uncharacterized protein LOC100811471 isoform 2 [Glycine max]

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 207/477 (43%), Gaps = 79/477 (16%)

Query: 41  SEEGDEILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAG--------V 92
           SE  D  +S  +  D   G+ +    E  I+  N+ ++       P  +          +
Sbjct: 117 SENNDLTVSENQELDENMGLAAVQNSEMGIDSANDMDVQQSQLVVPPIIQARTASPSYEL 176

Query: 93  AVGQEFE-------------IVQHF-IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTK 138
           +VGQEF              I  HF ++ IK+D  RF AKC ++GCPW I+AA++     
Sbjct: 177 SVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLPGVPT 236

Query: 139 SIIQKLNKVHECNGV--LETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKAN 196
             I+ +++ H C G+  L  ++AS +W+A+  E+ L+ NP    K + +E+    GI  +
Sbjct: 237 FTIRTIHENHTCGGISHLGHQQASVQWVANSVEQRLKENPNCKPKEILEEIHRVHGITLS 296

Query: 197 MKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRN-----------LDVLVKMKFVS- 244
            K+ +R K+R M  + G++ + Y+ L  Y + ++  N            D   +  F+S 
Sbjct: 297 YKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADGCFQRLFISF 356

Query: 245 -ALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKW 303
            A    F+N CR  +GLD  +L   + G LLLA   D     FP+A  + + E    W W
Sbjct: 357 QASIYGFLNPCRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMW 416

Query: 304 F-----------------FVILSEH-------------------CARHMFANLRSNHPDI 327
           F                   ILS+                    C RH+  + R    + 
Sbjct: 417 FLSELHNLLEIHTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSDSFRKEFNNT 476

Query: 328 IDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDI---KVDHV 384
           +  NL W    A +  E+E  + +I+   +D  AAY ++ +I  + WA       +  H+
Sbjct: 477 MLVNLLWEAANALTVIEFEAKILEIEEISQD--AAY-WIRRIPPRLWATAYFEGHRFGHL 533

Query: 385 TNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKL 441
           T N+ ES N W+ E    P++ + E I++ +M    +R     +W   L P   R++
Sbjct: 534 TANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRV 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452988|ref|XP_002262784.1| PREDICTED: uncharacterized protein LOC100258751 [Vitis vinifera] gi|147858253|emb|CAN83921.1| hypothetical protein VITISV_011842 [Vitis vinifera]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 206/483 (42%), Gaps = 71/483 (14%)

Query: 35  EVDCEGSEEGDEILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAGVAV 94
           E+    ++E D+ L     D +E G+ S S+  Q    +    +    T   N    + V
Sbjct: 118 ELAVSENQELDDNLDLAVDDHQEMGIESTSDMVQQHQLVVSTPVLQARTVVANPSYELVV 177

Query: 95  GQEFE-------------IVQHF-IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSI 140
           GQEF              I  HF ++ IK+D  RF AKC + GCPW I+AA++       
Sbjct: 178 GQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASDGCPWRIHAAKLPGVPTFT 237

Query: 141 IQKLNKVHECNGV--LETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMK 198
           I+ +++ H C G+  L  ++AS +W+A+  E+ L  NP    K + +E+    GI  + K
Sbjct: 238 IRTIHEAHTCGGIAHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYK 297

Query: 199 KMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMK-----------FVS--A 245
           + +R K+R M  + G++ + Y+ L  Y   ++  N   +  +            F+S  A
Sbjct: 298 QAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDNCFQRLFISFQA 357

Query: 246 LKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWF- 304
               F+N CR  +GLD   L   + G LL A   D     FP+A  + + E    W WF 
Sbjct: 358 SIYGFLNACRPLLGLDRTFLKSKYLGTLLFATGFDGDGALFPLAFGVVDEENDENWMWFL 417

Query: 305 ----------------FVILSEH-------------------CARHMFANLRSNHPDIID 329
                             ILS+                    C RH+  + R    + + 
Sbjct: 418 SELHNLLEVNTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSDSFRKEFNNTML 477

Query: 330 RNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARY---DIKVDHVTN 386
            NL W    A +  E+E  + +I+   +D  AAY ++ +I  + WA       +  H+T 
Sbjct: 478 VNLLWEAAHALTVIEFEAKILEIEEISQD--AAY-WIRRIPPRLWATAYFEGTRFGHLTA 534

Query: 387 NLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNVSRQ 446
           N+ ES N W+ E    P++ + E I++ +M    +R     +W   L P   R++  + +
Sbjct: 535 NIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALE 594

Query: 447 EGR 449
             R
Sbjct: 595 RAR 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479587|ref|XP_003632297.1| PREDICTED: uncharacterized protein LOC100261309 [Vitis vinifera]

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 192/436 (44%), Gaps = 73/436 (16%)

Query: 83  TTNPNEVAGVAVGQEFEIVQ-------------HF-IRVIKNDNKRFKAKCLNKGCPWFI 128
           T  P     + VGQEF  VQ             HF I+ +K+D  RF AKC + GCPW I
Sbjct: 168 TVVPAPNHELVVGQEFSDVQSCRRALRDTAIALHFEIQTVKSDKTRFTAKCASDGCPWRI 227

Query: 129 YAAQVEYGTKSIIQKLNKVHECNGV--LETKEASYKWIASQFERTLENNPKMHVKAMKDE 186
           + A++       I+ +++ H C G+  L  ++AS +W+AS  E++L+ NP    K + +E
Sbjct: 228 HCAKLPGVPTFTIRTIHESHTCGGITHLGHQQASVQWVASSVEQSLKENPHYKPKEILEE 287

Query: 187 LVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSAL 246
           +    GI  + K+ +R K+R M  + G++ + Y+ L  Y   +R  N +  + + + + +
Sbjct: 288 IHRVHGITLSYKQAWRGKERIMAAVRGSFEEGYRLLPQYCDQIRRTNPES-IALVYANPM 346

Query: 247 KNA--------------FINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCI 292
            N+              F+N CR  +GLD   L   + G LL A   D     FP+A  +
Sbjct: 347 DNSFHRLFVSFQASIYGFLNACRPLIGLDRTLLKSKYLGTLLFATGFDGDGALFPLAFGV 406

Query: 293 CESECAGRWKWF-----------------FVILSEH-------------------CARHM 316
            + E    W WF                   ILS+                    C RH+
Sbjct: 407 VDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKVIVEGVEANFPTAFHGFCMRHL 466

Query: 317 FANLRSNHPDIIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWAR 376
             + R    + +  NL W   +  +  E+E   K ++I +   +AAY ++ +I  + WA 
Sbjct: 467 SDSFRKEFNNTLLVNLLWEAAQVLTVIEFE--AKILEIEEISQEAAY-WIRRIPPRLWAT 523

Query: 377 Y---DIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKL 433
                 +  H+T N+ ES N W+ E    P++ + E I++ +M    +R     +W   L
Sbjct: 524 AYFEGTRFGHLTANVVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSIL 583

Query: 434 PPIVRRKLNVSRQEGR 449
            P   R+++ + +  R
Sbjct: 584 VPSAERRVSEALERAR 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6175165|gb|AAF04891.1|AC011437_6 Mutator-like transposase [Arabidopsis thaliana] gi|18389286|gb|AAL67086.1| putative Mutator transposase [Arabidopsis thaliana] gi|20465953|gb|AAM20162.1| putative mutator transposase [Arabidopsis thaliana]

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 186/418 (44%), Gaps = 71/418 (16%)

Query: 92  VAVGQEFE-------------IVQHF-IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGT 137
           + VGQEF              I  HF ++ IK+D  RF AKC + GCPW ++AA++    
Sbjct: 182 LTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVP 241

Query: 138 KSIIQKLNKVHECNGV--LETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKA 195
              I+ +++ H C G+  L  ++AS +W+AS  E+ L  NP    K + +E+    GI  
Sbjct: 242 TFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITL 301

Query: 196 NMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMK-----------FVS 244
           + K+ +R K+R M  + G++ + Y+ L  Y + ++  N   +  +            F+S
Sbjct: 302 SYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFIS 361

Query: 245 --ALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWK 302
             A    F+N CR  +GLD  +L   + G LLLA   D     FP+A  I + E    W 
Sbjct: 362 FQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVDEENDENWM 421

Query: 303 WF-----------------FVILSEH-------------------CARHMFANLRSNHPD 326
           WF                   ILS+                    C RH+  + R    +
Sbjct: 422 WFLCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSESFRKEFNN 481

Query: 327 IIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDI---KVDH 383
            +  N  W   +A +  E+E  + +I+   +D  AAY ++ +I  + WA       +  H
Sbjct: 482 TLLVNYLWEAAQALTVIEFEAKILEIEEISQD--AAY-WIRRIPPRLWATAYFEGQRFGH 538

Query: 384 VTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKL 441
           +T N+ ES N+W+ E    P++ + E I++ +M    +R     +W   L P   R++
Sbjct: 539 LTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTAERRV 596

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449645|ref|XP_004142575.1| PREDICTED: uncharacterized protein LOC101203810 [Cucumis sativus] gi|449532723|ref|XP_004173330.1| PREDICTED: uncharacterized LOC101203810 [Cucumis sativus]

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 188/426 (44%), Gaps = 71/426 (16%)

Query: 92  VAVGQEFE-------------IVQHF-IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGT 137
           ++VGQEF              I  HF ++ IK+D  RF AKC  +GCPW I+AA++    
Sbjct: 196 LSVGQEFPDVKSCRRALRDTAIALHFEVQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVP 255

Query: 138 KSIIQKLNKVHECNGV--LETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKA 195
              I+ ++  H C G+  L  ++AS +W+AS  E+ L  NP    K + +E+    GI  
Sbjct: 256 TFTIRTIHDTHTCGGINHLGHQQASVQWVASSMEQRLRENPNYKPKEILEEIHRVHGITL 315

Query: 196 NMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMK-----------FVS 244
           + K+ +R K+R M  + G++ + Y+ L  Y + ++  N   +  +            F+S
Sbjct: 316 SYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNATDNCFQRLFIS 375

Query: 245 --ALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWK 302
             A    F+N CR  +GLD  +L   + G LLLA   D     FP+A  + + E    W 
Sbjct: 376 FQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDENWM 435

Query: 303 WF-----------------FVILSEH-------------------CARHMFANLRSNHPD 326
           WF                   ILS+                    C RH+  + R    +
Sbjct: 436 WFLSELHNLLEINTENMPRLTILSDRLKCIVDGVEANFPTAFHGFCMRHLSESFRKEFNN 495

Query: 327 IIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARY---DIKVDH 383
            +   L W    A +  E+E  + +I+   +D  A Y ++ +I  + WA       +  H
Sbjct: 496 PMLGKLLWDAAYALTVIEFEAKVLEIEEMSQD--AGY-WIRRIPPRLWATAYFEGTRFGH 552

Query: 384 VTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNV 443
           +T N+ ES N+W++E    P++ + E I++ +M    +R     +W   L P   R++  
Sbjct: 553 LTANIIESLNSWISEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTAERRVAE 612

Query: 444 SRQEGR 449
           + +  R
Sbjct: 613 ALEHAR 618

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115958|ref|XP_002332013.1| predicted protein [Populus trichocarpa] gi|222875238|gb|EEF12369.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 188/426 (44%), Gaps = 71/426 (16%)

Query: 92  VAVGQEFE-------------IVQHF-IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGT 137
           +AVGQEF              I  HF ++ IK+D  RF AKC ++GCPW I+AA++    
Sbjct: 1   MAVGQEFPDVFSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLPGVP 60

Query: 138 KSIIQKLNKVHECNGV--LETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGIKA 195
              I+ +++ H C G+  L  ++AS +W+A+  E+ L+ NP    K + +E+    GI  
Sbjct: 61  TFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLKENPNYKPKEILEEIHRVHGITL 120

Query: 196 NMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMK-----------FVS 244
           + K+ +R K+R M  + G++ + Y+ L  Y   ++  N   +  +            F+S
Sbjct: 121 SYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDNCFQRLFIS 180

Query: 245 --ALKNAFINGCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWK 302
             A    F+N CR  +GLD   L   + G L LA   D     FP+A  + + E    W 
Sbjct: 181 FQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLATGFDGDGALFPLAFGVVDEETEENWM 240

Query: 303 WF-----------------FVILSEH-------------------CARHMFANLRSNHPD 326
           WF                   ILS+                    C RH+  + R    +
Sbjct: 241 WFLSELHSLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNN 300

Query: 327 IIDRNLFWVDVRATSEDEWEDNMKKIKIAKKDTQAAYDYLIKIDKKEWARY---DIKVDH 383
            +  NL W    A +  E+E  + +I+   +D  AAY ++ +I  + WA       +  H
Sbjct: 301 TMLVNLLWEAAHALTVIEFEAKILEIEEISQD--AAY-WIRRIPPRLWATAYFEGTRFGH 357

Query: 384 VTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRKLPPIVRRKLNV 443
           +T N+ ES N W+ E    P++ + E I++ +M    +R     +W   L P   R++  
Sbjct: 358 LTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAE 417

Query: 444 SRQEGR 449
           + +  R
Sbjct: 418 ALERAR 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357127783|ref|XP_003565557.1| PREDICTED: uncharacterized protein LOC100822107 [Brachypodium distachyon]

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 188/401 (46%), Gaps = 63/401 (15%)

Query: 101 VQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEAS 160
           ++   + I+ND  R +A C   GCPW++YA+        I+++ ++VH C      K  +
Sbjct: 281 IRVLTKKIRNDKNRLEAICA-PGCPWYLYASYDIRSCSFIVKRYDRVHTCQRQWVIKALT 339

Query: 161 YKWIASQFERTLENNPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQ 220
             ++A  F     ++  M +K    ++     ++A+  K+ RA+K+A+  + G+  + + 
Sbjct: 340 APFLAKFFLEQFRDDENMTLKTFARKVQRKFNLRASRTKLGRARKKALAMIYGDEMEQFN 399

Query: 221 RLRDYTQILRHRN-------------------LDVLVKMKF-VSALKNAFINGCRWFMGL 260
            L DY Q LRH N                   ++ L  + F + A K  F+ GCR  + L
Sbjct: 400 LLWDYGQELRHSNPGSSFYLSLQEIAIPPAPAIEHLSTLYFSLDACKRGFLKGCRHVICL 459

Query: 261 DDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWF---------------F 305
           D CHL   FGGV+L A+ +D  +  FPIA+ + E E    W WF               +
Sbjct: 460 DGCHLRTKFGGVMLTAVGIDPNDCIFPIALGVVEVEATPCWTWFLESLKKDLGIDNTGAY 519

Query: 306 VILSE-------------------HCARHMFANLRSNHPDIIDRNLFWVDVRATSEDEWE 346
            ++S+                    C RH++ N +  H   + +   W   R+++  EWE
Sbjct: 520 TLISDKQNGLINDVQKVWPDAGHRFCVRHLYQNFQKLHKGELLKKDLWACARSSNIPEWE 579

Query: 347 DNMKKIKIAKKDTQAAYDYLIKIDKKEWARYDI----KVDHVTNNLTESWNNWLNEYRDK 402
            NM ++   + D+ AA+ ++ ++    W +       K D + NN +E +N ++ + R+ 
Sbjct: 580 KNMLQL---QADSPAAHQWVEQLAPNTWVKAFFSEFPKCDILLNNTSEVFNGYILDAREM 636

Query: 403 PVLTLTEFIKKNVMKSL-YKRYSDVRKWIRKLPPIVRRKLN 442
           P+L++ E I+  +M  +  K+   + KWIR L P ++++LN
Sbjct: 637 PILSMLEQIRCQLMSRICSKQKEALEKWIRSLCPKIQKRLN 677

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	468
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.446	0.278	0.223	0.00042
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.431	0.280	0.204	0.00042

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 51/228 (22%), Positives = 91/228 (39%)

Query:   118 KCLNKGCPWFIYAAQVE-YGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNP 176
             +C+   C W + AA+++ +G   II K    H C+ ++  ++   ++   + ER +   P
Sbjct:   232 ECIRWKCKWSLGAARMKKHGLVEII-KYTGPHTCHPIVP-EDFKSEFETDEIERAVRYMP 289

Query:   177 KMHVKAMKDELVSNLGIXXXXXXXXXXXXXXXXXLNGNYTDSYQRLRDYTQILRHRN--- 233
                +  +K      +G                  + G++  S++        L   N   
Sbjct:   290 TQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSNGLL 349

Query:   234 ----LDVLVKMKFVS--ALKNAF---ING---CRWFMGLDDCHLNGPFGGVLLLAMALDA 281
                  D+     F S   +  AF   I G   CR  + +D  +LN  +   L++A  +DA
Sbjct:   350 VDWKYDLFPNPNFASFCGVFWAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMIASGVDA 409

Query:   282 KNENFPIAVCICESECAGRWKWFFVILSEHCA-RHMFANLRSNHPDII 328
              N+ FP+A  + +      W+WF   + E    R     + S HPDII
Sbjct:   410 ANKYFPLAFAVTKEVSTDIWRWFLTGIREKVTQRKGLCLISSPHPDII 457

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 45/220 (20%), Positives = 86/220 (39%)

Query:   107 VIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIAS 166
             V + + + +  +C+   C W + AA++E      I K    H C+        S ++ A 
Sbjct:   214 VRETEKEMYTFECVRWKCKWSLRAARMEEHGLVEITKYTGPHTCSHEYPNDFES-EFAAD 272

Query:   167 QFERTLENNPKMHVKAMKDELVSNLGIXXXXXXXXXXXXXXXXXLNGNYTDSYQRLRDYT 226
             + ER +   P + +  +K       G                  + G+   S++ +    
Sbjct:   273 EIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLI 332

Query:   227 QILRHRNLDVLVKMKF-------VSALKNAF------ING---CRWFMGLDDCHLNGPFG 270
                 H +  +LV  ++        ++ +  F      I G   CR  + +D   LNG + 
Sbjct:   333 SAF-HSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGFQHCRPLIVVDTKSLNGKYQ 391

Query:   271 GVLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSE 310
               L++A  +DA N+ FP+A  + +      W+WFF  + E
Sbjct:   392 LKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIRE 431

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb07g027820.1 hypothetical protein (846 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	468
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	2e-07

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 14/58 (24%)

Query: 91  GVAVGQEFE-------------IVQHF-IRVIKNDNKRFKAKCLNKGCPWFIYAAQVE 134
            + VGQ F+             I   F  +V K+D  R++AKC ++GCPW + A++++
Sbjct: 3   ELEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLK 60

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	468
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.59
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.39
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.37
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.14
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	97.09
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	96.45
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	93.33
PF13565	77	HTH_32: Homeodomain-like domain	91.67
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	87.13
PHA02517	277	putative transposase OrfB; Reviewed	81.62

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=7.3e-34  Score=312.36  Aligned_cols=308  Identities=13%  Similarity=0.175  Sum_probs=240.4

Q ss_pred             EecCCCCcEEEEEEecCCCeEEEEeccCCCCCCCccccccccHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhCC--cCC
Q 037988          119 CLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETKEASYKWIASQFERTLENNPKMHVKAMKDELVSNLGI--KAN  196 (468)
Q Consensus       119 C~~~~CpWri~as~~~~~~~~~I~~~~~~HtC~~~~~~~~~ts~~ia~~~~~~i~~~p~~~~~~I~~~v~~~~g~--~vS  196 (468)
                      |...||+.+|...+. ..+.|.|+.++.+|||+...... ++.                 ..+.+...+...++.  .+.
T Consensus       156 ~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~-~~~-----------------~~r~~~~~~~~~~~~~~~v~  216 (846)
T PLN03097        156 CAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQA-VSE-----------------QTRKMYAAMARQFAEYKNVV  216 (846)
T ss_pred             ccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccc-cch-----------------hhhhhHHHHHhhhhcccccc
Confidence            555789999999774 56789999999999999973322 110                 001111111111110  010


Q ss_pred             ------HHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHhcCCCcEEEEEechh------------hHHHHHhcCceEE
Q 037988          197 ------MKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSA------------LKNAFINGCRWFM  258 (468)
Q Consensus       197 ------y~k~~raK~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPGs~v~v~~d~~------------~~~~F~~~cr~vi  258 (468)
                            ....-+.+.+.+      ..+..+.|..|+..++..||++++.+++|++            ++..|. ++++||
T Consensus       217 ~~~~d~~~~~~~~r~~~~------~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~-~FGDvV  289 (846)
T PLN03097        217 GLKNDSKSSFDKGRNLGL------EAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYG-NFSDVV  289 (846)
T ss_pred             ccchhhcchhhHHHhhhc------ccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHH-hcCCEE
Confidence                  011112222211      2345678999999999999999999999873            344554 689999


Q ss_pred             EeccccccCCCCCceEEEEeecCCCceEEeeEeeeccccchhHHHHHH-------------Hhch---------------
Q 037988          259 GLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFV-------------ILSE---------------  310 (468)
Q Consensus       259 ~lD~t~l~~~y~g~Ll~avg~D~n~~~~piA~aiv~~E~~esw~WFl~-------------iisD---------------  310 (468)
                      .+|+||++++|++||..++|+|+|+|++++|+|++..|+.++|.|+|+             ||||               
T Consensus       290 ~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~  369 (846)
T PLN03097        290 SFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPN  369 (846)
T ss_pred             EEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999999             7788               


Q ss_pred             ----hhHHHHHHHHhhhCC-----ChhhHHHHHHHhh-cccHHHHHHHHHHHHHHhcCChHHHhHHhhc--cccchhc--
Q 037988          311 ----HCARHMFANLRSNHP-----DIIDRNLFWVDVR-ATSEDEWEDNMKKIKIAKKDTQAAYDYLIKI--DKKEWAR--  376 (468)
Q Consensus       311 ----~C~~Hi~~N~~~~~~-----~~~~~~~~~~~~~-a~~~~~f~~~~~~l~~~~~~~~~~~~~L~~~--~~~~W~~--  376 (468)
                          +|.|||++|+.+++.     .+.+...|+.|.+ +.++++|+..|..|.+.+  +.+..+||..+  .+++|+.  
T Consensus       370 t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky--~L~~n~WL~~LY~~RekWapaY  447 (846)
T PLN03097        370 AHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRF--ELKEDEWMQSLYEDRKQWVPTY  447 (846)
T ss_pred             ceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--cccccHHHHHHHHhHhhhhHHH
Confidence                999999999999875     3578889999776 578999999999988776  88899999998  8899999  


Q ss_pred             -cCCce-eeecCcchhhhhHHhhhc--ccCCHHHHHHHHHHHHHHHHHHHHH-h----------------HhhccCCCCh
Q 037988          377 -YDIKV-DHVTNNLTESWNNWLNEY--RDKPVLTLTEFIKKNVMKSLYKRYS-D----------------VRKWIRKLPP  435 (468)
Q Consensus       377 -~~~~~-~~~t~N~~Es~N~~i~~~--R~~pi~~~le~ir~~~~~~~~~r~~-~----------------~~~~~~~~tp  435 (468)
                       .+..| |+.||+.+||+|+.|+++  +..+|..|++.+...+..+..+..+ .                ..+.+..|||
T Consensus       448 ~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~  527 (846)
T PLN03097        448 MRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTH  527 (846)
T ss_pred             hcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHH
Confidence             66665 899999999999999985  9999999999998887766554321 1                1233579999


Q ss_pred             HHHHHHHHHHhcccceeEE
Q 037988          436 IVRRKLNVSRQEGRFVRKE  454 (468)
Q Consensus       436 ~i~k~l~~~~~~s~~~~~~  454 (468)
                      .|+++||+++..+..|.+.
T Consensus       528 ~iF~kFQ~El~~~~~~~~~  546 (846)
T PLN03097        528 AVFKKFQVEVLGAVACHPK  546 (846)
T ss_pred             HHHHHHHHHHHHhhheEEe
Confidence            9999999999999888774

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.59  E-value=6.1e-16  Score=159.93  Aligned_cols=211  Identities=13%  Similarity=0.140  Sum_probs=158.3

Q ss_pred             CCCCHHHHHHHHHHhhC-CcCCHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHhcCCCcEEEEEechhhHHHHHhcC
Q 037988          176 PKMHVKAMKDELVSNLG-IKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGC  254 (468)
Q Consensus       176 p~~~~~~I~~~v~~~~g-~~vSy~k~~raK~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPGs~v~v~~d~~~~~~F~~~c  254 (468)
                      .+++.++|.+.+..-+| ..+|.+++.|..+.+.+.+           ..|...-                     +...
T Consensus       113 ~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~-----------~~w~~R~---------------------L~~~  160 (381)
T PF00872_consen  113 KGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEV-----------EAWRNRP---------------------LESE  160 (381)
T ss_pred             cccccccccchhhhhhcccccCchhhhhhhhhhhhhH-----------HHHhhhc---------------------cccc
Confidence            46788899999999999 8899999998877665532           1121111                     1245


Q ss_pred             -ceEEEeccccccCCCC-----CceEEEEeecCCCceEEeeEeeeccccchhHHHHHH------------Hhch------
Q 037988          255 -RWFMGLDDCHLNGPFG-----GVLLLAMALDAKNENFPIAVCICESECAGRWKWFFV------------ILSE------  310 (468)
Q Consensus       255 -r~vi~lD~t~l~~~y~-----g~Ll~avg~D~n~~~~piA~aiv~~E~~esw~WFl~------------iisD------  310 (468)
                       .|+|.|||+|++.+.+     ..+++|+|+|.+|+..+||+.+.+.|+.++|.=||+            |++|      
T Consensus       161 ~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RGl~~~~lvv~Dg~~gl~  240 (381)
T PF00872_consen  161 PYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERGLKDILLVVSDGHKGLK  240 (381)
T ss_pred             cccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhccccccceeecccccccc
Confidence             6899999999997754     468999999999999999999999999999999999            7788      


Q ss_pred             -------------hhHHHHHHHHhhhCCCh---hhHHHHHHHhhcccHHHHHHHHHHHHHHh-cCChHHHhHHhhccccc
Q 037988          311 -------------HCARHMFANLRSNHPDI---IDRNLFWVDVRATSEDEWEDNMKKIKIAK-KDTQAAYDYLIKIDKKE  373 (468)
Q Consensus       311 -------------~C~~Hi~~N~~~~~~~~---~~~~~~~~~~~a~~~~~f~~~~~~l~~~~-~~~~~~~~~L~~~~~~~  373 (468)
                                   .|.+|+++|+.++++.+   .+...++.+..+++.+++...++.+.+.. ...|.+.++|.+.-.+.
T Consensus       241 ~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~  320 (381)
T PF00872_consen  241 EAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEENWDEL  320 (381)
T ss_pred             ccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhhccccc
Confidence                         99999999999999754   56677777878888777777777665432 23899999988754444


Q ss_pred             hhc---cC-CceeeecCcchhhhhHHhhhc----ccCCHHHHHHHHHHHHHHH
Q 037988          374 WAR---YD-IKVDHVTNNLTESWNNWLNEY----RDKPVLTLTEFIKKNVMKS  418 (468)
Q Consensus       374 W~~---~~-~~~~~~t~N~~Es~N~~i~~~----R~~pi~~~le~ir~~~~~~  418 (468)
                      |+.   +. .+--+.|||++||+|+.|+..    +.+|=.+.+..+...++..
T Consensus       321 ~tf~~fP~~~~~~i~TTN~iEsln~~irrr~~~~~~Fp~~~s~lr~~~~~~~e  373 (381)
T PF00872_consen  321 LTFLDFPPEHRRSIRTTNAIESLNKEIRRRTKVVGIFPNEESALRLVYAVLME  373 (381)
T ss_pred             cceeeecchhccccchhhhccccccchhhhccccccCCCHHHHHHHHHHHHHH
Confidence            444   11 222488999999999999873    4566554444444444433

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.39  E-value=4.6e-13  Score=110.51  Aligned_cols=59  Identities=29%  Similarity=0.674  Sum_probs=55.6

Q ss_pred             cccccCCCCCceEE---EEeecCCCceEEeeEeeeccccchhHHHHHH------------Hhch----------------
Q 037988          262 DCHLNGPFGGVLLL---AMALDAKNENFPIAVCICESECAGRWKWFFV------------ILSE----------------  310 (468)
Q Consensus       262 ~t~l~~~y~g~Ll~---avg~D~n~~~~piA~aiv~~E~~esw~WFl~------------iisD----------------  310 (468)
                      |||++|+| |+|+.   ++|.|++++.+|+||++++.|+.++|.|||+            ||+|                
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~~p~~ii~D~~~~~~~Ai~~vfP~~   79 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQKPKVIISDFDKALINAIKEVFPDA   79 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccccCceeeeccccHHHHHHHHHHCCCc
Confidence            79999999 99986   9999999999999999999999999999999            5677                


Q ss_pred             ---hhHHHHHHHHh
Q 037988          311 ---HCARHMFANLR  321 (468)
Q Consensus       311 ---~C~~Hi~~N~~  321 (468)
                         +|.+|+.+|++
T Consensus        80 ~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   80 RHQLCLFHILRNIK   93 (93)
T ss_pred             eEehhHHHHHHhhC
Confidence               99999999984

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.37  E-value=7.5e-13  Score=102.88  Aligned_cols=53  Identities=40%  Similarity=0.740  Sum_probs=50.9

Q ss_pred             CCccccccEee-------------ecceE-EEEEecCCceEEEEEecCCCCcEEEEEEecCCCeEEE
Q 037988           89 VAGVAVGQEFE-------------IVQHF-IRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSII  141 (468)
Q Consensus        89 ~~~~~vG~~F~-------------i~~~~-~~~~ksd~~r~~~~C~~~~CpWri~as~~~~~~~~~I  141 (468)
                      ||.|.+||+|+             |+++| |++.+|+++|++++|..++|||+|+|++.++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            68999999999             88999 9999999999999999999999999999999999987

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.14  E-value=6e-10  Score=114.03  Aligned_cols=202  Identities=14%  Similarity=0.112  Sum_probs=142.1

Q ss_pred             CCCCHHHHHHHHHHhhCCcCCHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHhcCCCcEEEEEechhhHHHHHhcCc
Q 037988          176 PKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCR  255 (468)
Q Consensus       176 p~~~~~~I~~~v~~~~g~~vSy~k~~raK~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPGs~v~v~~d~~~~~~F~~~cr  255 (468)
                      .+++++++.+.+++.++..+|.+...+.....++.+               .+++..-                 + +..
T Consensus        99 ~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e~v---------------~~~~~r~-----------------l-~~~  145 (379)
T COG3328          99 KGVTTREIEALLEELYGHKVSPSVISVVTDRLDEKV---------------KAWQNRP-----------------L-GDY  145 (379)
T ss_pred             cCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHHHH---------------HHHHhcc-----------------c-cCc
Confidence            467899999999999998888887777666555432               2222221                 1 578


Q ss_pred             eEEEeccccccCC--CCCceEEEEeecCCCceEEeeEeeeccccchhHHHHHH------------Hhch-----------
Q 037988          256 WFMGLDDCHLNGP--FGGVLLLAMALDAKNENFPIAVCICESECAGRWKWFFV------------ILSE-----------  310 (468)
Q Consensus       256 ~vi~lD~t~l~~~--y~g~Ll~avg~D~n~~~~piA~aiv~~E~~esw~WFl~------------iisD-----------  310 (468)
                      |++.+||+|++.+  -+.++++|+|++.+|+-.++++.+-+.|+ ..|.=||.            +++|           
T Consensus       146 ~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl~~v~l~v~Dg~~gl~~aI~~  224 (379)
T COG3328         146 PYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGLSDVLLVVVDGLKGLPEAISA  224 (379)
T ss_pred             eEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccccceeEEecchhhhhHHHHHH
Confidence            9999999999998  36789999999999999999999999999 99994444            4556           


Q ss_pred             --------hhHHHHHHHHhhhCCChh---hHHHHHHHhhcccHHHHHHHH----HHHHHHhcCChHHHhHHhhccccchh
Q 037988          311 --------HCARHMFANLRSNHPDII---DRNLFWVDVRATSEDEWEDNM----KKIKIAKKDTQAAYDYLIKIDKKEWA  375 (468)
Q Consensus       311 --------~C~~Hi~~N~~~~~~~~~---~~~~~~~~~~a~~~~~f~~~~----~~l~~~~~~~~~~~~~L~~~~~~~W~  375 (468)
                              .|..|+.+|+..+.+.+.   ....+..+..+++..+-...+    +.+...   .|....++.+.--+.|+
T Consensus       225 v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~---yP~i~~~~~~~~~~~~~  301 (379)
T COG3328         225 VFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKR---YPAILKSWRNALEELLP  301 (379)
T ss_pred             hccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhh---cchHHHHHHHHHHHhcc
Confidence                    999999999999988653   334444555555544444444    434445   77887777764333333


Q ss_pred             c----cCCceeeecCcchhhhhHHhhhc-ccCCHHHHHHHHHHH
Q 037988          376 R----YDIKVDHVTNNLTESWNNWLNEY-RDKPVLTLTEFIKKN  414 (468)
Q Consensus       376 ~----~~~~~~~~t~N~~Es~N~~i~~~-R~~pi~~~le~ir~~  414 (468)
                      -    ...|--+.|||..|++|+.|+.. +..++.+--++++..
T Consensus       302 F~~fp~~~r~~i~ttN~IE~~n~~ir~~~~~~~~fpn~~sv~k~  345 (379)
T COG3328         302 FFAFPSEIRKIIYTTNAIESLNKLIRRRTKVVGIFPNEESVEKL  345 (379)
T ss_pred             cccCcHHHHhHhhcchHHHHHHHHHHHHHhhhccCCCHHHHHHH
Confidence            3    11112478999999999988753 554454444444443

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=97.09  E-value=0.0019  Score=54.47  Aligned_cols=30  Identities=23%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             CCCcEEEEEEecCCCeEEEEeccCCCCCCC
Q 037988          123 GCPWFIYAAQVEYGTKSIIQKLNKVHECNG  152 (468)
Q Consensus       123 ~CpWri~as~~~~~~~~~I~~~~~~HtC~~  152 (468)
                      .|||+|+|........|.|..++..|+|+.
T Consensus        82 ~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   82 TCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             CCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            699999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=96.45  E-value=0.0091  Score=48.68  Aligned_cols=31  Identities=16%  Similarity=0.105  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEEecCCCeEEEEeccCCCCCCCc
Q 037988          122 KGCPWFIYAAQVEYGTKSIIQKLNKVHECNGV  153 (468)
Q Consensus       122 ~~CpWri~as~~~~~~~~~I~~~~~~HtC~~~  153 (468)
                      .|||++|.+.+.+ .+.|.|..+..+|||+..
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            7999999999887 999999999999999863

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=93.33  E-value=0.15  Score=38.52  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             CCceEEEEEecCCCCcEEEEEEecCCCeEEEEeccCCCCCC
Q 037988          111 DNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECN  151 (468)
Q Consensus       111 d~~r~~~~C~~~~CpWri~as~~~~~~~~~I~~~~~~HtC~  151 (468)
                      .-.|.-.+|+..+||.+-...+..+.....+++|.++|||+
T Consensus        19 ~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   19 PYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             TCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             ceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            34577799999999999999998878888899999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF13565 HTH_32: Homeodomain-like domain

Probab=91.67  E-value=0.44  Score=37.28  Aligned_cols=43  Identities=16%  Similarity=0.289  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhCCcC--CHHHHHHH
Q 037988          161 YKWIASQFERTLENNPKMHVKAMKDELVSNLGIKA--NMKKMYRA  203 (468)
Q Consensus       161 s~~ia~~~~~~i~~~p~~~~~~I~~~v~~~~g~~v--Sy~k~~ra  203 (468)
                      ...+...+...+..+|.|++.+|.+.|.+++|+.+  |.+.+||.
T Consensus        32 ~~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~   76 (77)
T PF13565_consen   32 DPEQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI   76 (77)
T ss_pred             cHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence            34454677788889999999999999999999876  99999985

>smart00774 WRKY DNA binding domain

Probab=87.13  E-value=0.85  Score=34.35  Aligned_cols=40  Identities=15%  Similarity=0.188  Sum_probs=32.2

Q ss_pred             CCceEEEEEec-CCCCcEEEEEEecCCCeEEEEeccCCCCC
Q 037988          111 DNKRFKAKCLN-KGCPWFIYAAQVEYGTKSIIQKLNKVHEC  150 (468)
Q Consensus       111 d~~r~~~~C~~-~~CpWri~as~~~~~~~~~I~~~~~~HtC  150 (468)
                      ...|--.+|.. .+|+.+=...+..+.+...+++|.++|||
T Consensus        19 ~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       19 PFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            33456689998 89999888877766666778899999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PHA02517 putative transposase OrfB; Reviewed

Probab=81.62  E-value=7.2  Score=38.32  Aligned_cols=123  Identities=13%  Similarity=0.075  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHhhc-CCCCCHHHHHHHHHHhhCCcCCHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHHhcCCCcEEE
Q 037988          161 YKWIASQFERTLEN-NPKMHVKAMKDELVSNLGIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRNLDVLVK  239 (468)
Q Consensus       161 s~~ia~~~~~~i~~-~p~~~~~~I~~~v~~~~g~~vSy~k~~raK~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPGs~v~  239 (468)
                      ...+...+...+.. .|.+..+.|...|++. |+.+|.++++|.-..+     |-.... ..      .-.....+....
T Consensus        28 ~~~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~~-~~------k~~~~~~~~~~~   94 (277)
T PHA02517         28 DDWLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGVL-RG------KKVRTTISRKAV   94 (277)
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceEe-cC------CCcCCCCCCCCC
Confidence            34566666666654 6789999999998765 9999999999864321     110000 00      000000000000


Q ss_pred             EEechh-hHHHHHh-cCceEEEeccccccCCCCCceEEEEeecCCCceEEeeEeeeccccchh
Q 037988          240 MKFVSA-LKNAFIN-GCRWFMGLDDCHLNGPFGGVLLLAMALDAKNENFPIAVCICESECAGR  300 (468)
Q Consensus       240 v~~d~~-~~~~F~~-~cr~vi~lD~t~l~~~y~g~Ll~avg~D~n~~~~piA~aiv~~E~~es  300 (468)
                        ..+. ..+.|.. .-..+++.|-|++...- |....++-+|.... +++||.+...++.+.
T Consensus        95 --~~~n~~~r~f~~~~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~  153 (277)
T PHA02517         95 --AAPDRVNRQFVATRPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDF  153 (277)
T ss_pred             --CCCCcccCCCCCCCCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHH
Confidence              0000 0122322 23458999999986543 55555666666543 567788877666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	468
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 59/485 (12%), Positives = 132/485 (27%), Gaps = 140/485 (28%)

Query: 34  EEVDCEGSEEG-DEILSNCESDDREHGMLSYSEDEQTINKINEHNISNYYTTNPNEVAGV 92
           +  DC+  ++    ILS  E D   H ++S      T                   +   
Sbjct: 31  DNFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGT-----------LR------LFWT 70

Query: 93  AVGQEFEIVQHFIRVIKNDN-----KRFKAKCLNKGCPWFIYAAQVE--YGTKSIIQKLN 145
            + ++ E+VQ F+  +   N        K +         +Y  Q +  Y    +  K N
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 146 -----KVHEC-NGVLETKEASY----------KWI----ASQFERTLENNP------KMH 179
                   +    +LE + A            K           +             + 
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 180 VKAMKDELVSNL-GIKANMKKMYRAKKRAMDKLNGNYTDSYQRLRDYTQILRHRN-LDVL 237
                + ++  L  +   +   + ++      +          LR   +   + N L VL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 238 --VKMKFVSALKNAFINGCRWFM-----GLDDC------------HLNGPFG---GVLLL 275
             V+        NAF   C+  +      + D             H +          LL
Sbjct: 251 LNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 276 AMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRNLFWV 335
              LD + ++ P  V                      +  + A    +     D      
Sbjct: 308 LKYLDCRPQDLPREVL--------------TTNPRRLS--IIAESIRDGLATWDN----- 346

Query: 336 DVRATSEDEWEDNMKKIKIAKKDT--QAAYDYLIKIDKKEWARYD---IKVDHVTNNLTE 390
                    W    K +   K  T  +++ + L   + ++   +D   +       ++  
Sbjct: 347 ---------W----KHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSA--HIPT 389

Query: 391 S-----WNNWLNEYRDKPVLTLTEFIKKNVMK--------SLYKRYSDVRKWIRKLPPIV 437
                 W +      D  ++ + +  K ++++        S+   Y +++  +     + 
Sbjct: 390 ILLSLIWFD--VIKSD-VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 438 RRKLN 442
           R  ++
Sbjct: 447 RSIVD 451

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 54/386 (13%), Positives = 109/386 (28%), Gaps = 134/386 (34%)

Query: 99  EIVQHFIRVIKNDNKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGVLETK- 157
           +I+  F     ++   F  K              V+   KSI+ K     E + ++ +K 
Sbjct: 20  DILSVFEDAFVDN---FDCK-------------DVQDMPKSILSK----EEIDHIIMSKD 59

Query: 158 --EASYK--WIASQFERTLENNPKMHVKA-MKDELVSNLG-IKANMKKMYRAKKRAMDKL 211
               + +  W        L +  +  V+  +++ L  N   + + +K   R         
Sbjct: 60  AVSGTLRLFWT-------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM- 111

Query: 212 NGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAFINGCRWFMGLDDCHLNGPFGG 271
              Y +   RL +  Q+    N+    +++    L+ A +        L       P   
Sbjct: 112 ---YIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLE-------LR------PAKN 152

Query: 272 VLLLAMALDAKNENFPIAVCICESECAGRWKWFFVILSEHCARHMFANLRSNHPDIIDRN 331
           VL+  +                     G  K    +  + C  +    ++          
Sbjct: 153 VLIDGVL--------------------GSGKT--WVALDVCLSY---KVQCKMDF----K 183

Query: 332 LFWVDVRATSEDE-------------------WEDNMKKIKIAKKDTQAAYDYLIKIDKK 372
           +FW++++  +  E                     D+   IK+     QA    L+K   K
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SK 241

Query: 373 EWARYDIKVDHVTNNLTESWNNWLNEY-----------RDKPV------LTLTEFIKKNV 415
            +    + + +V        N                 R K V       T T     + 
Sbjct: 242 PYENCLLVLLNV-------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 416 MKSLYKRYSD--VRKWIR----KLPP 435
             +L        + K++      LP 
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPR 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	468
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	91.83
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	91.78

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=91.83  E-value=0.37  Score=37.26  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=34.7

Q ss_pred             ceEEEEEecCCCCcEEEEEEecCCCeEEEEeccCCCCCCCc
Q 037988          113 KRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGV  153 (468)
Q Consensus       113 ~r~~~~C~~~~CpWri~as~~~~~~~~~I~~~~~~HtC~~~  153 (468)
                      -|--.+|...+|+.+-+..+........+.+|.++|||+..
T Consensus        37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            45568999999999999998876677778899999999863

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=91.78  E-value=0.35  Score=37.19  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             ceEEEEEecCCCCcEEEEEEecCCCeEEEEeccCCCCCCCc
Q 037988          113 KRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGV  153 (468)
Q Consensus       113 ~r~~~~C~~~~CpWri~as~~~~~~~~~I~~~~~~HtC~~~  153 (468)
                      -|--.+|...+|+.+-+..+..+....-+.+|.++|||+..
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            45568999999999999998877777788999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	468
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	94.18

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.18  E-value=0.05  Score=39.46  Aligned_cols=42  Identities=17%  Similarity=0.205  Sum_probs=35.6

Q ss_pred             CceEEEEEecCCCCcEEEEEEecCCCeEEEEeccCCCCCCCc
Q 037988          112 NKRFKAKCLNKGCPWFIYAAQVEYGTKSIIQKLNKVHECNGV  153 (468)
Q Consensus       112 ~~r~~~~C~~~~CpWri~as~~~~~~~~~I~~~~~~HtC~~~  153 (468)
                      -.|.-.+|+..+|+.+-..-+..+.....+++|.++|||+.+
T Consensus        29 ~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          29 YPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             SCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            346668899999999999988877777788899999999864