Citrus Sinensis ID: 037996
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | 2.2.26 [Sep-21-2011] | |||||||
| Q6CGU8 | 486 | Probable transporter MCH1 | yes | no | 0.358 | 0.395 | 0.280 | 3e-08 |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 29/221 (13%)
Query: 286 CDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI-DNLGQIGESLGYPTKTIKSF 344
CD P G + L+ + LF+ F +G +N+G I +++ SF
Sbjct: 255 CDGP--GHEGATLKEFFTDKTAWLFLLCFVFIGGPFEMFQNNMGAILDTVTVENADSPSF 312
Query: 345 VSLVSIWNYFG---RVFAGFVSEGLLAKYKMPRPLMLTLV-LVLSCIGLLL---IAFPFP 397
+ VS++ F R+ GF SE + + + RP++L+++ LV +CI L++ I F
Sbjct: 313 STHVSLFATFSTVSRLVVGFSSEAM--ESHVSRPVLLSVIALVAACIHLMVPSGIFTVFD 370
Query: 398 GSVY--VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSY---ILNVK 452
+ Y V +++ GFS+G+ L+ I+++++G+ T++ LA +GS +L K
Sbjct: 371 NAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGLLFAK 430
Query: 453 VTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFII 493
V YD A E+ M++ +C GV CY L F+I
Sbjct: 431 V----YD--AASEVGVGSMSQ------VCSGVHCYGLTFVI 459
|
Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| 224118316 | 559 | predicted protein [Populus trichocarpa] | 0.981 | 0.939 | 0.773 | 0.0 | |
| 255565443 | 558 | conserved hypothetical protein [Ricinus | 0.985 | 0.944 | 0.754 | 0.0 | |
| 224104707 | 559 | predicted protein [Populus trichocarpa] | 0.981 | 0.939 | 0.760 | 0.0 | |
| 297826137 | 573 | nodulin family protein [Arabidopsis lyra | 0.996 | 0.930 | 0.732 | 0.0 | |
| 15226338 | 577 | major facilitator protein [Arabidopsis t | 0.994 | 0.922 | 0.724 | 0.0 | |
| 359479437 | 588 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.901 | 0.739 | 0.0 | |
| 359479433 | 599 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.889 | 0.713 | 0.0 | |
| 147858879 | 599 | hypothetical protein VITISV_026994 [Viti | 0.996 | 0.889 | 0.713 | 0.0 | |
| 449459092 | 594 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.870 | 0.693 | 0.0 | |
| 449529184 | 594 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.966 | 0.870 | 0.689 | 0.0 |
| >gi|224118316|ref|XP_002331452.1| predicted protein [Populus trichocarpa] gi|118486602|gb|ABK95139.1| unknown [Populus trichocarpa] gi|222873530|gb|EEF10661.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/530 (77%), Positives = 459/530 (86%), Gaps = 5/530 (0%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
MAGAGATYLFGTYSKDIKA+LGYDQ+TLNLLGFFKDLGANVGV SGLL E+TPTWFVLLV
Sbjct: 26 MAGAGATYLFGTYSKDIKATLGYDQTTLNLLGFFKDLGANVGVFSGLLAEVTPTWFVLLV 85
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS MNFAGY MIWLAVT KIA+PAVW MC YICIGANSQNFANTGALVTCVKNFPESRG
Sbjct: 86 GSAMNFAGYFMIWLAVTQKIARPAVWQMCLYICIGANSQNFANTGALVTCVKNFPESRGV 145
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+GLLKGF GLSGAILTQ YLA+YG DSKSLILLIGWLPAA+SVIFVYT+R +
Sbjct: 146 MLGLLKGFVGLSGAILTQFYLAIYGTDSKSLILLIGWLPAALSVIFVYTVRERKP-ERQP 204
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E +VFYHFLY SIVLALFLM M I+EK + F + AYA SA +LFVPL IAIRE+
Sbjct: 205 NELRVFYHFLYVSIVLALFLMAMNIVEKQVDFSKAAYAGSAAVVCAMLFVPLIIAIREDW 264
Query: 241 AIWNLKKQ----PPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYT 296
WNLK Q P +E TV++ +I P+ + D+ + + +SCF++IC KP RGEDYT
Sbjct: 265 VQWNLKNQDGMKPATETTVDRALDIAPEVKSEVSKDKEEKAKESCFVSICHKPERGEDYT 324
Query: 297 ILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGR 356
ILQALLS+DMLILF ATF GLG SLTA+DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGR
Sbjct: 325 ILQALLSMDMLILFAATFCGLGGSLTAVDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGR 384
Query: 357 VFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLP 416
VF+GFVSE LL KYKMPRPLM+T VL+L+C+G LLIAFPFPGSVYVASVI+GF+FGAQLP
Sbjct: 385 VFSGFVSESLLVKYKMPRPLMMTFVLLLACVGHLLIAFPFPGSVYVASVIMGFAFGAQLP 444
Query: 417 LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476
L+FAIISELFGLKYYSTLFNCGQLASPLGSYILNVK+TG LYDH+A+KELAKKGMNRS V
Sbjct: 445 LLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKITGHLYDHEALKELAKKGMNRSSV 504
Query: 477 KELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRE 526
KELIC+GV+CYR+PFIIL+ VT FGAL+S +LV+RTR+FY SDIYKKFRE
Sbjct: 505 KELICMGVQCYRVPFIILSSVTLFGALISLVLVMRTRKFYSSDIYKKFRE 554
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565443|ref|XP_002523712.1| conserved hypothetical protein [Ricinus communis] gi|223537016|gb|EEF38652.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/534 (75%), Positives = 460/534 (86%), Gaps = 7/534 (1%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
MAGAGATYLFGTYSKDIKA+LGYDQ TLNLLGFFKDLGANVGV SGL+ E+TPTWFVLL+
Sbjct: 26 MAGAGATYLFGTYSKDIKATLGYDQQTLNLLGFFKDLGANVGVLSGLIAEVTPTWFVLLM 85
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS MNF GY MIWL VTG+IAKPAVW MC YICIGANSQNFANTGALVTCV NFPESRG
Sbjct: 86 GSAMNFTGYFMIWLTVTGRIAKPAVWQMCLYICIGANSQNFANTGALVTCVINFPESRGV 145
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+GLLKGF GLSGAI TQ+YLA+YG DSKSLILLI WLPAA+SV+FVYTIR++ +
Sbjct: 146 MLGLLKGFVGLSGAIFTQLYLAIYGTDSKSLILLIAWLPAALSVVFVYTIRVMKP-ERQP 204
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E KVFY+FLY SIVLALFL++++ILEK ++F REAYAASAT + LFVPL IA++EE
Sbjct: 205 NELKVFYNFLYVSIVLALFLLLISILEKQINFSREAYAASATVACLFLFVPLLIAVKEEW 264
Query: 241 AIWNLKKQ----PPSEVTVEKPAEIE--PKKEPLPPPDEPKGSTKSCFLTICDKPPRGED 294
WNLKK+ PP+E+ ++KP E+ + E + P + + +SCFLTI DKP RGED
Sbjct: 265 IQWNLKKEEAMKPPTELAIQKPKEVTALEQDEVVKPEVSKEKAERSCFLTIFDKPERGED 324
Query: 295 YTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYF 354
YTILQALLSIDMLILF AT GLG+SLTA+DNLGQIGESLGYPTKTI +FVSLVSIWNYF
Sbjct: 325 YTILQALLSIDMLILFAATLCGLGASLTAVDNLGQIGESLGYPTKTINTFVSLVSIWNYF 384
Query: 355 GRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQ 414
GRVFAGFVSEGLL KYK PRPLM+T VL+L+CIG L+IAFPF SVY+ASVI+GFSFGAQ
Sbjct: 385 GRVFAGFVSEGLLVKYKTPRPLMMTFVLLLACIGHLIIAFPFTNSVYLASVIMGFSFGAQ 444
Query: 415 LPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRS 474
LPL+FAIISELFGLKYYSTLFNCGQLASP+GSYILNVKVTG LYD++A+KEL KKG+NRS
Sbjct: 445 LPLLFAIISELFGLKYYSTLFNCGQLASPIGSYILNVKVTGLLYDNEALKELHKKGLNRS 504
Query: 475 DVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENA 528
VKEL+C+GV+CYR PFIIL+C T FGA+VS ILVIRTR+FY DIYKKFRE +
Sbjct: 505 SVKELVCLGVECYRKPFIILSCATFFGAIVSLILVIRTRKFYSGDIYKKFRERS 558
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104707|ref|XP_002313536.1| predicted protein [Populus trichocarpa] gi|222849944|gb|EEE87491.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/530 (76%), Positives = 455/530 (85%), Gaps = 5/530 (0%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
MAGAGATYLFGTYSKDIK++LGYDQ+TLNLLGFFKDLGANVGV SGLL E+TPTWFVL+V
Sbjct: 26 MAGAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLLAEVTPTWFVLVV 85
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS MNFAGY MIW++VT +IAKPAVW MC YICIGANSQNFANTGALVTCVKNFPESRG
Sbjct: 86 GSAMNFAGYFMIWMSVTQRIAKPAVWQMCLYICIGANSQNFANTGALVTCVKNFPESRGV 145
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+G+LKGF GLSGAI TQ YLA+YG DSKSLILLIGWLPAA+SVIF YT+R +
Sbjct: 146 MLGMLKGFVGLSGAIFTQFYLAIYGTDSKSLILLIGWLPAALSVIFAYTVRERKP-ERQP 204
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E KVFY FL SI+LALFLM M I+EK++ F + AYA SAT V+LF+PL I+I+E+
Sbjct: 205 NELKVFYQFLIVSIILALFLMAMNIVEKLVDFSKAAYAGSATVVCVMLFIPLIISIKEDW 264
Query: 241 AIWNLKKQ----PPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYT 296
WNLK Q P +E T EK +I P+ + ++ + KSCFLTIC+KPPRGEDYT
Sbjct: 265 IQWNLKHQEGMKPATEATAEKKLDITPEVKSEISKEQEEKVQKSCFLTICNKPPRGEDYT 324
Query: 297 ILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGR 356
ILQALLSIDMLILF ATF GLG+SLTA+DNLGQIGESLGYPTKTIKSFVSLVSIWN+FGR
Sbjct: 325 ILQALLSIDMLILFAATFCGLGASLTAVDNLGQIGESLGYPTKTIKSFVSLVSIWNFFGR 384
Query: 357 VFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLP 416
VFAGFVSE LL KYKMPRPLM+T VL+L+C+G LLIAFPF GSVYVASVI GFSFGAQLP
Sbjct: 385 VFAGFVSESLLVKYKMPRPLMMTFVLLLACVGYLLIAFPFSGSVYVASVITGFSFGAQLP 444
Query: 417 LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476
L+FAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTG LYD +AVKELAKKG++RS V
Sbjct: 445 LLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGLLYDREAVKELAKKGLDRSAV 504
Query: 477 KELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRE 526
KEL+CIGV+C+RLPFI+L+ VT GAL+S ILV+RTR+FY SDIYKKFRE
Sbjct: 505 KELVCIGVQCFRLPFIVLSAVTFSGALISLILVMRTRKFYSSDIYKKFRE 554
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826137|ref|XP_002880951.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297326790|gb|EFH57210.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/538 (73%), Positives = 452/538 (84%), Gaps = 5/538 (0%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
MA AGATYLFGTYSKDIK++LGYDQ+TLNLLGFFKDLGANVGV SGL+ E+TPTWFVL +
Sbjct: 28 MACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLIAEVTPTWFVLTI 87
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS MNF GY MIWL VTGK+AKP VW MC YICIGANSQNFANTGALVTCVKNFPESRG
Sbjct: 88 GSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFANTGALVTCVKNFPESRGV 147
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+GLLKG+ GLSGAILTQ+Y A+YG+DSKSLILLI WLPAA+S++FVY IR VV+
Sbjct: 148 MLGLLKGYVGLSGAILTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVYLIREKKVVRQ-R 206
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E VFY FLY SI LALFLM M I EK + F + AYAASAT C VLLFVPL +++++E+
Sbjct: 207 NELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAYAASATICCVLLFVPLTVSVKQEI 266
Query: 241 AIWNLKKQP---PSEVTVEKPA-EIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYT 296
+WN+KK P PSEV VEKP E++ ++ D + TKSCFLT+ PPRGEDYT
Sbjct: 267 EVWNMKKLPIEEPSEVKVEKPKKELDLVQDKTAKVDGEEKETKSCFLTVFSPPPRGEDYT 326
Query: 297 ILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGR 356
ILQALLS DM+ILFVATF GLGSSLTA+DNLGQIGESLGYP T+ SFVSLVSIWNYFGR
Sbjct: 327 ILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIWNYFGR 386
Query: 357 VFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLP 416
VF+GFVSE LLAKYK+PRPLM+TLVL+LSC G LLIAFP PGSVY+AS+++GFSFGAQLP
Sbjct: 387 VFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSFGAQLP 446
Query: 417 LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476
L+FAIISELFGLKYYSTLFNCGQLASPLGSYILNV+VTG LYD +A+K+L +G+ R DV
Sbjct: 447 LLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDREALKQLTARGLTRKDV 506
Query: 477 KELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENAEESSSS 534
K+L C+G +CY+LPF+ILA VT FGALVS L IRTREFY+ DIYKKFRE+ E S S
Sbjct: 507 KDLTCLGSQCYKLPFVILAAVTFFGALVSLGLAIRTREFYKGDIYKKFRESTESESDS 564
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226338|ref|NP_180379.1| major facilitator protein [Arabidopsis thaliana] gi|4063746|gb|AAC98454.1| nodulin-like protein [Arabidopsis thaliana] gi|16209714|gb|AAL14413.1| At2g28120/F24D13.9 [Arabidopsis thaliana] gi|17064922|gb|AAL32615.1| nodulin-like protein [Arabidopsis thaliana] gi|20259958|gb|AAM13326.1| nodulin-like protein [Arabidopsis thaliana] gi|330252988|gb|AEC08082.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/537 (72%), Positives = 447/537 (83%), Gaps = 5/537 (0%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
MA AGATYLFGTYSKDIK++LGYDQ+TLNLLGFFKDLGANVGV SGL+ E+TPTWFVL +
Sbjct: 28 MACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLIAEVTPTWFVLTI 87
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS MNF GY MIWL VTGK+AKP VW MC YICIGANSQNFANTGALVTCVKNFPESRG
Sbjct: 88 GSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFANTGALVTCVKNFPESRGV 147
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+GLLKG+ GLSGAI TQ+Y A+YG+DSKSLILLI WLPAA+S++FVY IR VV+
Sbjct: 148 MLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVYLIREKKVVRQ-R 206
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E VFY FLY SI LALFLM M I EK + F + AYAASAT C LLFVPL +++++EL
Sbjct: 207 NELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAYAASATICCALLFVPLTVSVKQEL 266
Query: 241 AIWNLKKQP---PSEVTVEKPA-EIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYT 296
+WN+ K P PSEV VEKP E++ ++ + + TKSCF T+ PPRGEDYT
Sbjct: 267 EVWNMMKLPIEEPSEVKVEKPKKELDLDQDKAAKVNGEEKETKSCFSTVFSPPPRGEDYT 326
Query: 297 ILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGR 356
ILQALLS DM+ILFVATF GLGSSLTA+DNLGQIGESLGYP T+ SFVSLVSIWNYFGR
Sbjct: 327 ILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIWNYFGR 386
Query: 357 VFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLP 416
VF+GFVSE LLAKYK+PRPLM+TLVL+LSC G LLIAFP PGSVY+AS+++GFSFGAQLP
Sbjct: 387 VFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSFGAQLP 446
Query: 417 LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476
L+FAIISELFGLKYYSTLFNCGQLASPLGSYILNV+VTG LYD +A+K+L +G+ R DV
Sbjct: 447 LLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTARGLTRKDV 506
Query: 477 KELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENAEESSS 533
K+L C+G +CY+LPF+ILA VT FGALVS L IRTREFY+ DIYKKFRE+ E S
Sbjct: 507 KDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKFRESPESESE 563
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479437|ref|XP_003632273.1| PREDICTED: uncharacterized protein LOC100244770 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/538 (73%), Positives = 454/538 (84%), Gaps = 8/538 (1%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
M GAGATYLFG YSK+IK+S+GYDQSTLNL+GFFKDLGANVGVP+GL+ E+TPTWFVLLV
Sbjct: 39 MVGAGATYLFGIYSKEIKSSMGYDQSTLNLIGFFKDLGANVGVPAGLIAEVTPTWFVLLV 98
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS +NF+G+ MIWLAVTG+IAKP VW +CAYIC+GANSQNFANTGALVT VKNFPESRG
Sbjct: 99 GSALNFSGFFMIWLAVTGQIAKPKVWQICAYICVGANSQNFANTGALVTSVKNFPESRGV 158
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+GLLKGF GLSGAI+TQ+Y AVYGNDSKSLILLIGW PAAISV+FV+TIR + VV+
Sbjct: 159 MLGLLKGFVGLSGAIMTQIYFAVYGNDSKSLILLIGWFPAAISVVFVFTIRTMKVVRQ-P 217
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E +VFYHFLY S+ LA+FLMVMTILEK ++FPR AYA S T LLF+PL IAIR+E
Sbjct: 218 NELRVFYHFLYVSVALAVFLMVMTILEKQLAFPRAAYAGSVTVVCALLFLPLVIAIRQEF 277
Query: 241 AIWNLKKQ---PPSEVTVEKPAEIEPKKEPLPPPDEP----KGSTKSCFLTICDKPPRGE 293
A WN +KQ PSE+T+EKP +E K LPP P K ++ SCF TI KPPRGE
Sbjct: 278 APWNQQKQQDDSPSEITIEKPQAVESKLVALPPTSSPNREGKSNSPSCFTTIFQKPPRGE 337
Query: 294 DYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNY 353
DYTILQALLSIDM ILF+AT GLGSSLTAIDNLGQIGESLGYPTKTI SFVSLVSIWN+
Sbjct: 338 DYTILQALLSIDMSILFLATLFGLGSSLTAIDNLGQIGESLGYPTKTISSFVSLVSIWNF 397
Query: 354 FGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGA 413
FGRVFAGF+SE L+AK+K PR LMLTLVL+L C+G L+IAFP GSVYVASVI+GFSFGA
Sbjct: 398 FGRVFAGFLSEALVAKWKFPRTLMLTLVLLLLCVGHLMIAFPISGSVYVASVILGFSFGA 457
Query: 414 QLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNR 473
QL L+F IISELFGLKYYSTLFNCGQLASPLG+Y+LNVK+TG YD++A+KELAKKGM R
Sbjct: 458 QLTLLFTIISELFGLKYYSTLFNCGQLASPLGTYVLNVKITGMFYDNEALKELAKKGMTR 517
Query: 474 SDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENAEES 531
V EL C+GV+CYR FIILA T FGALVS ILVIRTR+FY+ DIYKKF+E + S
Sbjct: 518 LSVNELTCLGVRCYRKSFIILAAGTFFGALVSLILVIRTRQFYKGDIYKKFKEETKPS 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479433|ref|XP_002273103.2| PREDICTED: uncharacterized protein LOC100249900 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/541 (71%), Positives = 449/541 (82%), Gaps = 8/541 (1%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
M G G+TYLFG YS++IK++LGYDQ+TLNLLGFFKD+G N+GVP+GL+ E+TPTWFVLL+
Sbjct: 43 MIGPGSTYLFGIYSQEIKSALGYDQTTLNLLGFFKDMGTNIGVPAGLVAEVTPTWFVLLL 102
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS +N GYLMIWLAVT +IA+P VWHMC Y +G+NSQNFANTGALVTCVKNFPESRG
Sbjct: 103 GSALNLWGYLMIWLAVTARIARPKVWHMCVYNFVGSNSQNFANTGALVTCVKNFPESRGI 162
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
MIGLLKGF GL GAI+TQ Y A+YG+DSK+LIL++GW PAA+ VIFVYTIR + VV+
Sbjct: 163 MIGLLKGFVGLGGAIMTQFYFAIYGDDSKALILMVGWFPAALCVIFVYTIRTMKVVRQ-P 221
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E K+FY FLY SIVLALFLMVMTI++K + FPR AYA S T VLLF+P IAIREEL
Sbjct: 222 NEVKMFYQFLYVSIVLALFLMVMTIVQKQIVFPRAAYAGSVTVVCVLLFLPFVIAIREEL 281
Query: 241 AIWNLKKQ---PPSEVTVEKPAEIEPKKEPLPP----PDEPKGSTKSCFLTICDKPPRGE 293
WNL++Q P+EVTVEKP E E K LPP +E K ++ S F + KPPRGE
Sbjct: 282 TFWNLERQHDNSPTEVTVEKPQEEESKPVALPPVSSTQEEEKPNSSSFFANVFKKPPRGE 341
Query: 294 DYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNY 353
DYTILQALLSIDML LF+AT GLGSSLTAIDNLGQIG +LGYPT+TI SFVSLVSIWNY
Sbjct: 342 DYTILQALLSIDMLTLFLATMCGLGSSLTAIDNLGQIGGALGYPTRTISSFVSLVSIWNY 401
Query: 354 FGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGA 413
FGRVF+GFVSE L+AK+K+PRPLMLTL LVL C+G L+IAFP PGS+YVASV IGF++GA
Sbjct: 402 FGRVFSGFVSEILIAKWKVPRPLMLTLTLVLLCVGHLMIAFPAPGSIYVASVFIGFAYGA 461
Query: 414 QLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNR 473
QL LIFAIISELFGLKYY+TLFNCGQLA+P+G+Y+LNVKVTG YD +A+KELAKKGM R
Sbjct: 462 QLTLIFAIISELFGLKYYATLFNCGQLATPIGTYVLNVKVTGMFYDQEALKELAKKGMTR 521
Query: 474 SDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENAEESSS 533
S VKELICIGV+CY+ FIILA T FGA VS ILVIRT+EFYR DIYKKFRE A+ S +
Sbjct: 522 SSVKELICIGVQCYKKSFIILAAGTLFGAAVSMILVIRTQEFYRGDIYKKFREQADASQT 581
Query: 534 S 534
Sbjct: 582 E 582
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858879|emb|CAN82898.1| hypothetical protein VITISV_026994 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/541 (71%), Positives = 448/541 (82%), Gaps = 8/541 (1%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
M G G TYLFG YS++IK++LGYDQ+TLNLLGFFKD+G N+GVP+GL+ E+TPTWFVLL+
Sbjct: 43 MIGPGTTYLFGIYSQEIKSALGYDQTTLNLLGFFKDMGTNIGVPAGLVAEVTPTWFVLLL 102
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS +N GYLMIWLAVT +IA+P VWHMC Y +G+NSQNFANTGALVTCVKNFPESRG
Sbjct: 103 GSALNLWGYLMIWLAVTARIARPKVWHMCVYNFVGSNSQNFANTGALVTCVKNFPESRGI 162
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
MIGLLKGF GL GAI+TQ Y A+YG+DSK+LIL++GW PAA+ VIFVYTIR + VV+
Sbjct: 163 MIGLLKGFVGLGGAIMTQFYFAIYGDDSKALILMVGWFPAALCVIFVYTIRTMKVVRQ-P 221
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E K+FY FLY SIVLALFLMVMTI++K + FPR AYA S T VLLF+P IAIREEL
Sbjct: 222 NEVKMFYQFLYVSIVLALFLMVMTIVQKQIVFPRAAYAGSVTVVCVLLFLPFVIAIREEL 281
Query: 241 AIWNLKKQ---PPSEVTVEKPAEIEPKKEPLPP----PDEPKGSTKSCFLTICDKPPRGE 293
WNL++Q P+EVTVEKP E E K LPP +E K ++ S F + KPPRGE
Sbjct: 282 TFWNLERQHDNSPTEVTVEKPQEEESKPVALPPVSSTQEEEKPNSSSFFANVFKKPPRGE 341
Query: 294 DYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNY 353
DYTILQALLSIDML LF+AT GLGSSLTAIDNLGQIG +LGYPT+TI SFVSLVSIWNY
Sbjct: 342 DYTILQALLSIDMLTLFLATMCGLGSSLTAIDNLGQIGGALGYPTRTISSFVSLVSIWNY 401
Query: 354 FGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGA 413
FGRVF+GFVSE L+AK+K+PRPLMLTL LVL C+G L+IAFP PGS+YVASV IGF++GA
Sbjct: 402 FGRVFSGFVSEILIAKWKVPRPLMLTLTLVLLCVGHLMIAFPAPGSIYVASVFIGFAYGA 461
Query: 414 QLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNR 473
QL LIFAIISELFGLKYY+TLFNCGQLA+P+G+Y+LNVKVTG YD +A+KELAKKGM R
Sbjct: 462 QLTLIFAIISELFGLKYYATLFNCGQLATPIGTYVLNVKVTGMFYDQEALKELAKKGMTR 521
Query: 474 SDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENAEESSS 533
S VKELICIGV+CY+ FIILA T FGA VS ILVIRT+EFYR DIYKKFRE A+ S +
Sbjct: 522 SSVKELICIGVQCYKKSFIILAAGTLFGAAVSMILVIRTQEFYRGDIYKKFREQADASQT 581
Query: 534 S 534
Sbjct: 582 E 582
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459092|ref|XP_004147280.1| PREDICTED: uncharacterized protein LOC101217765 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/541 (69%), Positives = 443/541 (81%), Gaps = 24/541 (4%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
MAGAGATYLFG YSK IK++LGYDQ+TLNL+GFFKDLGANVGV SGL+ E+TPTWFVLL+
Sbjct: 39 MAGAGATYLFGVYSKQIKSALGYDQTTLNLMGFFKDLGANVGVLSGLVAEVTPTWFVLLL 98
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS +NF GY MIWLAV+G+IAKP VW MC YIC+GANSQNFANTGALVTC++NFPESRG
Sbjct: 99 GSALNFTGYFMIWLAVSGRIAKPKVWQMCLYICVGANSQNFANTGALVTCIQNFPESRGA 158
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+GLLKGFTGLSGAILT++Y AVY +D+ +LILLIGWLPAAISV+FV+TIR + +
Sbjct: 159 MMGLLKGFTGLSGAILTEIYRAVYADDATALILLIGWLPAAISVVFVFTIRRLRS-ERQP 217
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E +VFYHFLY SI LA+F+M+M I++K + F AYA+SAT V LF+PL + IREEL
Sbjct: 218 NEKRVFYHFLYISIGLAVFIMIMNIVQKKVQFNHTAYASSATVICVFLFLPLLVVIREEL 277
Query: 241 AIWNLKK------QPPSEVTVEKP----------AEIEPKKEPLPPPDEPKGSTKSCFLT 284
IWN KK + P +++P EI+ + PPP+ SCF
Sbjct: 278 RIWNTKKSTSVPIESPQPKPIDEPKIITEESKQITEIQKQNLATPPPE-------SCFSN 330
Query: 285 ICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSF 344
IC KPPRG+DYTILQALLSIDM +LFVATF GLG+SLTA+DNLGQIGESLGYP KT+ SF
Sbjct: 331 ICQKPPRGDDYTILQALLSIDMFVLFVATFCGLGTSLTAVDNLGQIGESLGYPLKTVSSF 390
Query: 345 VSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVAS 404
VSLVSIWNYFGR+FAGFVSE LLA++K PRPLM+TLVL+LSC+G LLIAFP PGSVY+AS
Sbjct: 391 VSLVSIWNYFGRIFAGFVSESLLARFKFPRPLMMTLVLLLSCVGQLLIAFPVPGSVYIAS 450
Query: 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVK 464
VIIGFSFGAQLPL+FAIISELFGLKY+STLFNCGQ+ASPLGSYILNVKV G LYD +A+K
Sbjct: 451 VIIGFSFGAQLPLLFAIISELFGLKYFSTLFNCGQIASPLGSYILNVKVAGMLYDMEALK 510
Query: 465 ELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKF 524
+L +KG++RS VKELIC+G +CYR F I A VT GA+VS +LV+RTREFY+ DIYKKF
Sbjct: 511 QLKEKGLDRSAVKELICMGKQCYRKSFSITAIVTFVGAMVSLVLVMRTREFYKGDIYKKF 570
Query: 525 R 525
R
Sbjct: 571 R 571
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529184|ref|XP_004171581.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101217765 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/541 (68%), Positives = 442/541 (81%), Gaps = 24/541 (4%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
MAGAGATYLFG YSK IK++LGYDQ+TLNL+GFFKDLGANVGV SGL+ E+TPTWFVLL+
Sbjct: 39 MAGAGATYLFGVYSKQIKSALGYDQTTLNLMGFFKDLGANVGVLSGLVAEVTPTWFVLLL 98
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS +NF GY MIWLAV+G+IAKP VW MC YIC+GANSQNFANTGALVTC++NFPESRG
Sbjct: 99 GSALNFTGYFMIWLAVSGRIAKPKVWQMCLYICVGANSQNFANTGALVTCIQNFPESRGA 158
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+GLLKGFTGLSGAILT+++ AVY +D+ +LILLIGWLPAAISV+FV+TIR + +
Sbjct: 159 MMGLLKGFTGLSGAILTEIFRAVYADDATALILLIGWLPAAISVVFVFTIRRLRS-ERQP 217
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
+E + FYHFLY SI LA+F+M+M I++K + F AYA+SAT V LF+PL + IREEL
Sbjct: 218 NEXEGFYHFLYISIGLAVFIMIMNIVQKKVQFNHTAYASSATVICVFLFLPLLVVIREEL 277
Query: 241 AIWNLKK------QPPSEVTVEKP----------AEIEPKKEPLPPPDEPKGSTKSCFLT 284
IWN KK + P +++P EI+ + PPP+ SCF
Sbjct: 278 RIWNTKKSTSVPIESPQPKPIDEPKIITEESKQITEIQKQNLATPPPE-------SCFSN 330
Query: 285 ICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSF 344
IC KPPRG+DYTILQALLSIDM +LFVATF GLG+SLTA+DNLGQIGESLGYP KT+ SF
Sbjct: 331 ICQKPPRGDDYTILQALLSIDMFVLFVATFCGLGTSLTAVDNLGQIGESLGYPLKTVSSF 390
Query: 345 VSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVAS 404
VSLVSIWNYFGR+FAGFVSE LLA++K PRPLM+TLVL+LSC+G LLIAFP PGSVY+AS
Sbjct: 391 VSLVSIWNYFGRIFAGFVSESLLARFKFPRPLMMTLVLLLSCVGQLLIAFPVPGSVYIAS 450
Query: 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVK 464
VIIGFSFGAQLPL+FAIISELFGLKY+STLFNCGQ+ASPLGSYILNVKV G LYD +A+K
Sbjct: 451 VIIGFSFGAQLPLLFAIISELFGLKYFSTLFNCGQIASPLGSYILNVKVAGMLYDMEALK 510
Query: 465 ELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKF 524
+L +KG++RS VKELIC+G +CYR F I A VT GA+VS +LV+RTREFY+ DIYKKF
Sbjct: 511 QLKEKGLDRSAVKELICMGKQCYRKSFSITAIVTFVGAMVSLVLVMRTREFYKGDIYKKF 570
Query: 525 R 525
R
Sbjct: 571 R 571
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.992 | 0.920 | 0.697 | 3.3e-198 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.985 | 0.876 | 0.582 | 9e-164 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.431 | 0.395 | 0.419 | 2.2e-84 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.431 | 0.398 | 0.398 | 3.6e-82 | |
| TAIR|locus:2011241 | 526 | AT1G18940 [Arabidopsis thalian | 0.433 | 0.441 | 0.379 | 1.7e-80 | |
| TAIR|locus:2159752 | 540 | AT5G50520 [Arabidopsis thalian | 0.431 | 0.427 | 0.380 | 2.8e-80 | |
| TAIR|locus:2832385 | 540 | AT5G50630 [Arabidopsis thalian | 0.431 | 0.427 | 0.380 | 2.8e-80 | |
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.921 | 0.924 | 0.363 | 3e-78 | |
| TAIR|locus:1005716659 | 523 | AT2G34355 [Arabidopsis thalian | 0.409 | 0.418 | 0.380 | 3.2e-75 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.407 | 0.415 | 0.360 | 8.5e-75 |
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1919 (680.6 bits), Expect = 3.3e-198, P = 3.3e-198
Identities = 374/536 (69%), Positives = 424/536 (79%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
MA AGATYLFGTYSKDIK++LGYDQ+TLNLLGFFKDLGANVGV SGL+ E+TPTWFVL +
Sbjct: 28 MACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLIAEVTPTWFVLTI 87
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
GS MNF GY MIWL VTGK+AKP VW MC YICIGANSQNFANTGALVTCVKNFPESRG
Sbjct: 88 GSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFANTGALVTCVKNFPESRGV 147
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
M+GLLKG+ GLSGAI TQ+Y A+YG+DSKSLILLI WLPAA+S++FVY IR VV+ +
Sbjct: 148 MLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVYLIREKKVVRQRN 207
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
E VFY FLY SI LALFLM M I EK + F + AYAASAT C LLFVPL +++++EL
Sbjct: 208 -ELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAYAASATICCALLFVPLTVSVKQEL 266
Query: 241 AIWNLKKQP---PSEVTVXX-XXXXXXXXXXXXXXXXXXGSTKSCFLTICDKPPRGEDYT 296
+WN+ K P PSEV V TKSCF T+ PPRGEDYT
Sbjct: 267 EVWNMMKLPIEEPSEVKVEKPKKELDLDQDKAAKVNGEEKETKSCFSTVFSPPPRGEDYT 326
Query: 297 ILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGR 356
ILQALLS DM+ILFVATF GLGSSLTA+DNLGQIGESLGYP T+ SFVSLVSIWNYFGR
Sbjct: 327 ILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIWNYFGR 386
Query: 357 VFAGFVSEGLLAKYKMPRPLMXXXXXXXXXXXXXXXAFPFPGSVYVASVIIGFSFGAQLP 416
VF+GFVSE LLAKYK+PRPLM AFP PGSVY+AS+++GFSFGAQLP
Sbjct: 387 VFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSFGAQLP 446
Query: 417 LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476
L+FAIISELFGLKYYSTLFNCGQLASPLGSYILNV+VTG LYD +A+K+L +G+ R DV
Sbjct: 447 LLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTARGLTRKDV 506
Query: 477 KELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENAEESS 532
K+L C+G +CY+LPF+ILA VT FGALVS L IRTREFY+ DIYKKFRE+ E S
Sbjct: 507 KDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKFRESPESES 562
|
|
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1594 (566.2 bits), Expect = 9.0e-164, P = 9.0e-164
Identities = 313/537 (58%), Positives = 389/537 (72%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
M+ AGATY+FG YS DIK +LGYDQ+TLNLL FFKDLGANVGV +GLL E+TP WF+LL+
Sbjct: 32 MSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKDLGANVGVLAGLLNEVTPPWFILLI 91
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
G+ +NF GY MIWLAVT +I+KP VWHMC YIC+GANSQ+FANTG+LVTCVKNFPESRG
Sbjct: 92 GAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGV 151
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTS 180
++G+LKG+ GLSGAI+TQ+Y A YG D+K LIL+IGWLPA +S F+ TIRI+ V + T+
Sbjct: 152 VLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIGWLPAIVSFAFLRTIRIMKVKRQTN 211
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240
E KVFY+FLY S+ LA FLMV+ I+ K+ F + + SA IVLL +P+ + I EE
Sbjct: 212 -ELKVFYNFLYISLGLATFLMVVIIINKLSGFTQSEFGGSAAVVIVLLLLPIIVVILEEK 270
Query: 241 AIWNLKK---QPPSEVTVXXXXXXXXXXXXXXXXXXXXGS------TKSCFLTICDKPPR 291
+W K+ P+ + V T SC+ T+ + P R
Sbjct: 271 KLWKEKQVALNDPAPINVVTEKPKLDSSEFKDDDGEESKEVVEKVKTPSCWTTVFNPPER 330
Query: 292 GEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIW 351
G+DYTILQAL S+DMLILF+AT G+G +LTAIDNLGQIG SLGYP +++ +FVSLVSIW
Sbjct: 331 GDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIW 390
Query: 352 NYFGRVFAGFVSEGLLAKYKMPRPLMXXXXXXXXXXXXXXXAFPFPGSVYVASVIIGFSF 411
NY+GRV +G VSE L KYK PRPLM AF PG +YVASVIIGF F
Sbjct: 391 NYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCF 450
Query: 412 GAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGM 471
GAQ PL+FAIISE+FGLKYYSTL+N G +ASP+GSY+LNV+V G LYD +A K+ G
Sbjct: 451 GAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGK 510
Query: 472 NRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENA 528
R + ++L CIG C++L FII+A VT FG LVS +LVIRT++FY+SDIYKKFRE A
Sbjct: 511 TRVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIYKKFREKA 567
|
|
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 447 (162.4 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
Identities = 99/236 (41%), Positives = 136/236 (57%)
Query: 4 AGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLVGSG 63
AG YLFG+ S IK+SL Y+Q L+ LG KDLG +VG +G L EI P W LLVGS
Sbjct: 30 AGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGDSVGFLAGTLSEILPLWAALLVGSV 89
Query: 64 MNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGNMIG 123
N GY +WL VTG+ +W MC I +G N + + NT ALV+ V+NFP+SRG ++G
Sbjct: 90 QNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGETYFNTAALVSGVQNFPKSRGPVVG 149
Query: 124 LLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHT---S 180
+LKGF GL GAIL+QVY ++ +D SLI ++ P+ + V ++ IR PV H S
Sbjct: 150 ILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFFIR--PVGGHRQIRS 207
Query: 181 HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAI 236
+A F I+LA +LM + ++E + A +L VP+ I I
Sbjct: 208 SDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIIIAFTVVLFAILLVPIFIPI 263
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 94/236 (39%), Positives = 139/236 (58%)
Query: 4 AGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLVGSG 63
AG YLFG+ S IK+SL Y+Q L+ LG KDLG +VG +G L EI P W LLVG+
Sbjct: 30 AGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDSVGFIAGTLSEILPLWAALLVGAV 89
Query: 64 MNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGNMIG 123
N GY +WL VTG+ +W MC I +G N + + NTGALV+ V+NFP+SRG ++G
Sbjct: 90 QNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGETYFNTGALVSGVQNFPKSRGPVVG 149
Query: 124 LLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHEA 183
+LKGF GL GAI++Q+Y ++ ++ SLIL++ PA + V ++ IR PV H
Sbjct: 150 ILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAVVVVCLMFFIR--PVGGHKQIRP 207
Query: 184 K--VFYHFLYA-SIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAI 236
+ F+Y ++LA +LM + +++ ++ V+L VP+ + I
Sbjct: 208 TDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVITVFTIVLFVILVVPILVPI 263
|
|
| TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 94/248 (37%), Positives = 142/248 (57%)
Query: 4 AGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITP---------- 53
AG +Y FG YS +K++ YDQSTL+ + FKD+G NVGV SGL+
Sbjct: 23 AGGSYTFGIYSAILKSTQSYDQSTLDTVSVFKDIGGNVGVLSGLVYTAATFNRRRRDGRE 82
Query: 54 ----TWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVT 109
W V+L+G+ +NF GY ++W +VTG I +P V MC ++ I A S F NT +V+
Sbjct: 83 RRGGPWVVILIGAILNFTGYFLMWASVTGLIKRPPVPVMCLFMFIAAQSLTFLNTANVVS 142
Query: 110 CVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYT 169
++NF + G +G++KGF GLSGA+L Q+Y V D K+ ILL+ +P+ +SV+ +
Sbjct: 143 SLENFADYGGTAVGIMKGFVGLSGAMLIQLYEVVCPGDPKTFILLLAIVPSLLSVLVMPL 202
Query: 170 IRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLF 229
+R+ T E K S+++A +LM+ IL+ +S P A A + +VLL
Sbjct: 203 VRVYKT--STVDEKKHLDGLSTLSLIIAAYLMITIILKSTLSLPSWANAVTLAVLLVLLS 260
Query: 230 VPLAIAIR 237
PL +A+R
Sbjct: 261 SPLLVAVR 268
|
|
| TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 89/234 (38%), Positives = 142/234 (60%)
Query: 4 AGATYLFG-TYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLVGS 62
AG YLFG + S IK SLGY+Q + LLG K+LG +G SG L E++P+W VLLVG+
Sbjct: 30 AGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGALSEVSPSWVVLLVGA 89
Query: 63 GMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGNMI 122
N GY ++WL VTG++ +W + I +G N + + NT +LV+C+ NFPESRG ++
Sbjct: 90 TQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLVSCIHNFPESRGPVV 149
Query: 123 GLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHE 182
G+LKGF+GLSGAILTQVYL + S+IL++ P + + ++ +R + T+
Sbjct: 150 GILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLFIVRPVERSCRTNLR 209
Query: 183 AK-VFYHFLYA-SIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAI 234
+ + + +Y +VLA++L+ + +L+ V + S ++ + VP+ +
Sbjct: 210 SDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILVIFMVVPVLV 263
|
|
| TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 89/234 (38%), Positives = 142/234 (60%)
Query: 4 AGATYLFG-TYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLVGS 62
AG YLFG + S IK SLGY+Q + LLG K+LG +G SG L E++P+W VLLVG+
Sbjct: 30 AGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGALSEVSPSWVVLLVGA 89
Query: 63 GMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGNMI 122
N GY ++WL VTG++ +W + I +G N + + NT +LV+C+ NFPESRG ++
Sbjct: 90 TQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLVSCIHNFPESRGPVV 149
Query: 123 GLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHE 182
G+LKGF+GLSGAILTQVYL + S+IL++ P + + ++ +R + T+
Sbjct: 150 GILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLFIVRPVERSCRTNLR 209
Query: 183 AK-VFYHFLYA-SIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAI 234
+ + + +Y +VLA++L+ + +L+ V + S ++ + VP+ +
Sbjct: 210 SDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILVIFMVVPVLV 263
|
|
| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 195/536 (36%), Positives = 282/536 (52%)
Query: 4 AGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLL--------------- 48
+GA+Y FG YS +K++ YDQSTL+ + FKD+GAN GV SGLL
Sbjct: 21 SGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFSGLLYTYATSNRLRGRGGG 80
Query: 49 -GEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGAL 107
G W VL VG+ FAGY +IW +VTG I KP V MC ++ + A SQ F NT +
Sbjct: 81 IGGAGGPWVVLAVGAIQCFAGYFLIWASVTGLIRKPPVPLMCLFMFLAAQSQTFFNTANV 140
Query: 108 VTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167
V+ V+NF + G +G++KGF GLSGAIL Q+Y + D S ILL+ P +S++ +
Sbjct: 141 VSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDPASFILLLAVTPTVLSLLVM 200
Query: 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVL 227
+RI + + K S+++A +LM++ IL+ A + +V+
Sbjct: 201 PLVRIYET--SVADDKKHLNGLSAVSLIIAAYLMIIIILKNTFGLSSWANIVTLVCLLVM 258
Query: 228 LFVPLAIAIREELAIWNLKKQPPSEVTVXXXXXXXXXXXXXXXXXXXXGSTKSCFLTICD 287
L +PL IA R + ++K P + + G +K
Sbjct: 259 LALPLLIARRAQRD--GMEKTVPHDYSPLISSPKATTSGNQSSE----GDSKV------- 305
Query: 288 KPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSL 347
+ E+ +LQA+ + +LF+A G+GS L+ I+N+ QIGESL Y + I S VSL
Sbjct: 306 EAGLSENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSL 365
Query: 348 VSIWNYFGRVFAGFVSEGLLAKYKMPRPLMXXXXXXXXXXXXXXXAFPFPGSVYVASVII 407
SIWN+ GR AG+ S+ LL K PRPL+ A F G++YV SVI+
Sbjct: 366 WSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIV 425
Query: 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELA 467
G +G+Q L+ I SELFG+++ T+FN +ASP+GSYI +V++ G +YD A E
Sbjct: 426 GVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGE-- 483
Query: 468 KKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKK 523
G C G C+RL FII+A V FG LV+ +L RT+ YR + K+
Sbjct: 484 --GNT--------CYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKR 529
|
|
| TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 88/231 (38%), Positives = 136/231 (58%)
Query: 293 EDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWN 352
ED IL+A+ +++ +LF+A G+GS ++N+ QIGESL Y + + S VSL SIWN
Sbjct: 302 EDSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLNSLVSLWSIWN 361
Query: 353 YFGRVFAGFVSEGLLAKYKMPRPLMXXXXXXXXXXXXXXXAFPFPGSVYVASVIIGFSFG 412
+ GR AG+VS+ L K+ PRP+ A GS+Y SV+IG ++G
Sbjct: 362 FLGRFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYAGSVLIGMAYG 421
Query: 413 AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMN 472
+Q L+ I SE+FG+++ T++ +A P+GSYIL+VKV G YD ++A + N
Sbjct: 422 SQWSLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYFYD-----KVASEDDN 476
Query: 473 RSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKK 523
C G +C+R F+I+A V FG+LV+ +L RT +FY++ + K+
Sbjct: 477 S-------CFGSQCFRTSFMIMASVALFGSLVASVLFFRTHKFYKNLVAKR 520
|
|
| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 83/230 (36%), Positives = 134/230 (58%)
Query: 294 DYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNY 353
D +L+A+ + + +LFVA G+GS L I+N+ Q+GESL Y T + S VSL SIWN+
Sbjct: 305 DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNF 364
Query: 354 FGRVFAGFVSEGLLAKYKMPRPLMXXXXXXXXXXXXXXXAFPFPGSVYVASVIIGFSFGA 413
GR +G++S+ L + PRP+ A GS+Y+ S+++G ++G+
Sbjct: 365 LGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSLYIGSLLVGLAYGS 424
Query: 414 QLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNR 473
Q L+ I SE+FG+ + T+F +ASP+GSY +VKV G LYD A ++ +
Sbjct: 425 QWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDKVASED------DH 478
Query: 474 SDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKK 523
S C G C+R F+I+A + G+LV+ +L++RT++FY + + K+
Sbjct: 479 S------CYGNHCFRTSFLIMAAMALLGSLVALVLLLRTKKFYATLVAKR 522
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | estExt_fgenesh4_pg.C_1630016 | SubName- Full=Putative uncharacterized protein; (559 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 535 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 6e-98 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 9e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 0.002 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 6e-98
Identities = 114/237 (48%), Positives = 148/237 (62%), Gaps = 1/237 (0%)
Query: 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLV 60
+ AGA Y F YS +K+SLGY Q LNLLG KDLG N G SGL E P W VLLV
Sbjct: 12 QSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAAEYLPPWVVLLV 71
Query: 61 GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGN 120
G+ M F GY + WLAVTGKI W +C IC+ NS + NT +LVTC++NFPESRG
Sbjct: 72 GAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVTCIRNFPESRGV 131
Query: 121 MIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPV-VQHT 179
++G+LKG+ GLS AI TQ+Y A++GND+ SL+LL +P +S++ +Y IR P V
Sbjct: 132 VLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYFIRPCPGKVGEQ 191
Query: 180 SHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAI 236
E+ VF F S+ LA++L+ M+IL K Y A ++LL VPLA+ I
Sbjct: 192 RSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLLLVPLAVPI 248
|
This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 9/161 (5%)
Query: 291 RGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSI 350
+DYT+ + L + +L+++ F S L I G+SLG + VS+ SI
Sbjct: 192 SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSI 251
Query: 351 WNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVYVASVII-- 407
+N GR F G +S+ K+ R +++V +S +G+ + F P V + +
Sbjct: 252 FNGGGRPFLGALSD------KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305
Query: 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYI 448
F++G + L +++S++FG + + A +
Sbjct: 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIF 346
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 7/157 (4%)
Query: 306 MLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEG 365
+L+L +A F + L + + + + L+ G + +
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA---AEAGLLLSLFGLGGILGALLGGL 233
Query: 366 LLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIFAIISEL 425
L + R L+L +L+ + LLL P + VA +++GF G P + + SEL
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 426 FGLKYYSTLF----NCGQLASPLGSYILNVKVTGSLY 458
+ T G L LG + + + Y
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 105 GALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISV 164
GA+VT + FP +RG ++ ++K FTGL AIL + LA + +++ + + + +
Sbjct: 140 GAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGI 199
Query: 165 IFVYTIRIIP 174
+ + +R+ P
Sbjct: 200 LAIVFMRLPP 209
|
Length = 591 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.98 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.98 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.96 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.96 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.95 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.95 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.95 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.94 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.93 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.92 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.91 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.91 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.91 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.91 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.91 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.9 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.9 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.88 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.88 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.88 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.88 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.88 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.87 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.87 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.87 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.87 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.86 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.86 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.85 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.84 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.84 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.84 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.83 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.81 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.81 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.77 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.76 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.75 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.75 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.74 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.72 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.72 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.72 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.69 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.69 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.68 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.63 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.62 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.59 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.57 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.5 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.48 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.44 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.43 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.41 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.38 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.38 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.38 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.37 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.36 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.36 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.35 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.33 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.32 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.32 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.32 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.31 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.31 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.31 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.31 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.31 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.3 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.29 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.29 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.28 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.28 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.28 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.26 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.26 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.26 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.26 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.26 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.26 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.25 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.25 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.25 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.25 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.25 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.24 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.23 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.22 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.22 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.22 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.22 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.22 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.2 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.2 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.2 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.18 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.18 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.18 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.17 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.14 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.14 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.13 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.12 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.12 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.11 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.11 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.08 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.08 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.08 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.07 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.06 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.05 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.05 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.05 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.04 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.02 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.01 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.98 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.98 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.98 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.97 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.92 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.9 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.9 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.89 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.88 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.88 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.87 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.86 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.82 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.8 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.79 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.75 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.75 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.72 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.71 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.69 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.67 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.63 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.61 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.51 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.44 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.44 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.41 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.4 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.39 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.38 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.37 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.35 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.35 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.27 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.25 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.24 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.21 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.15 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.09 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.08 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.07 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.06 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.06 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.05 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.03 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.03 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.98 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.96 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.89 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.84 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.83 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.75 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.74 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.68 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.67 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.57 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.57 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.43 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.37 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.35 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.2 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.15 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.12 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.07 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.94 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.83 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.71 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.69 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.66 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.37 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.19 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 96.16 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.09 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.08 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.07 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.79 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.72 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.55 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 95.18 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.77 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.12 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 92.79 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 90.96 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 90.59 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 90.21 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 89.37 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.14 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 85.57 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 85.37 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 83.64 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 82.49 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=415.22 Aligned_cols=499 Identities=18% Similarity=0.244 Sum_probs=395.6
Q ss_pred CcccCcccccccccHHHHHHcCCChhhhHHHHHhhhhccccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 037996 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKI 80 (535)
Q Consensus 1 ~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ 80 (535)
|.+.|..|.|+.+.|++++++|+|++|++++.+.......+.+++|+++||+|+|++++++.+++.+|+++++++..+..
T Consensus 37 ~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i 116 (591)
T PTZ00207 37 SICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI 116 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 35678999999999999999999999999976654444455778999999999999999999999999999887655544
Q ss_pred CChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037996 81 AKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPA 160 (535)
Q Consensus 81 ~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 160 (535)
. +++++++++|+++|+|.+..++.+...+.+|||++||+++|+..++.++|+++.+++...++..++++++++++++++
T Consensus 117 ~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~ 195 (591)
T PTZ00207 117 E-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFAL 195 (591)
T ss_pred c-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3 479999999999999999999999999999999999999999999999999999999998888778888999999999
Q ss_pred HHHHHHHhhhcccCCCCC-------Ccchhh-----------------HHHHHHHHHHHHHHHHHHHHHhhhcccCChhh
Q 037996 161 AISVIFVYTIRIIPVVQH-------TSHEAK-----------------VFYHFLYASIVLALFLMVMTILEKVMSFPREA 216 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-------~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (535)
+..++...+++.+|++.. +.+++. +|.....+++.+++|+++..+..++.+.++..
T Consensus 196 vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~ 275 (591)
T PTZ00207 196 VVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNF 275 (591)
T ss_pred HHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 998888888887765431 122222 56666777888999999999999998888888
Q ss_pred hhhhhhHHH-HHhhhh-hhHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCcccccccc-CCCCCCC
Q 037996 217 YAASATGCI-VLLFVP-LAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTIC-DKPPRGE 293 (535)
Q Consensus 217 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 293 (535)
+...+++.+ ++++.| +.++.+. .++++++ +++++ ++ .+ +.+++++.+.+++.....+.+ ..|+..+
T Consensus 276 ~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~~-~~~~~---~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 344 (591)
T PTZ00207 276 KVGFAVTVIVLTVIFPFMAFPLTT-FDGKRPH-DDSDG---KA--KE----HVEAGEEVSAAEDKVVETDVDYIAPQFQE 344 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH-hccCCcC-CCccc---cc--cc----cccccccccccccccccccccCCCCCCcc
Confidence 888777666 677777 5555554 2111110 00100 00 00 000000000000000000111 2233333
Q ss_pred CCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhc-CCCCcc--chhhHHHHHHhhHHHHHHhhhhchhhhhcc
Q 037996 294 DYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESL-GYPTKT--IKSFVSLVSIWNYFGRVFAGFVSEGLLAKY 370 (535)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~ 370 (535)
+++|.+++.+||++++.++|..+.+..+++|..++.+++ |.+.++ ...++++.++++++||+..|.++ .+-+|+
T Consensus 345 --t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~ 421 (591)
T PTZ00207 345 --TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKR 421 (591)
T ss_pred --hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhh
Confidence 899999999999999999999999999999999999999 874333 33489999999999999999998 443443
Q ss_pred C----CCchHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhH
Q 037996 371 K----MPRPLMLTLVLVLSCIGLLLIAFPFP-GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLG 445 (535)
Q Consensus 371 ~----~~r~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig 445 (535)
+ ++|+..+.+..+ +.++.+++....+ ..+++..++.|++.|..+++..++++|+|+ |+.|+.|.+..+...+|
T Consensus 422 ~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pig 499 (591)
T PTZ00207 422 RAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLS 499 (591)
T ss_pred ccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHH
Confidence 3 788888888777 7777666665545 789999999999999999999999999999 99999999999999999
Q ss_pred HHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhh
Q 037996 446 SYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFR 525 (535)
Q Consensus 446 ~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 525 (535)
+.+|+..++|.+||+..++ .++..|.|..||+.+|++++++++++++++..++.|+|+++++..+||+|
T Consensus 500 s~~~n~~l~G~~Yd~ea~k-----------~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~~~~ 568 (591)
T PTZ00207 500 AIFLNRLLYGEWYTQQADK-----------LGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKALEERRR 568 (591)
T ss_pred HHHHHHHHHHHHHHHHHhh-----------CCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHHHHHHH
Confidence 9999899999999997643 23458999999999999999999999999999999999999988888765
Q ss_pred cc
Q 037996 526 EN 527 (535)
Q Consensus 526 ~~ 527 (535)
.+
T Consensus 569 ~~ 570 (591)
T PTZ00207 569 IR 570 (591)
T ss_pred HH
Confidence 53
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=281.56 Aligned_cols=412 Identities=17% Similarity=0.202 Sum_probs=294.8
Q ss_pred cccCcccccccccHHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 037996 2 AGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKI 80 (535)
Q Consensus 2 ~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ 80 (535)
...|..++++++.+.++++|+-+.++++|+.+...... +.+++.+.+.||||.|++.++|.++..+|.++..++
T Consensus 57 ~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~----- 131 (509)
T KOG2504|consen 57 STDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA----- 131 (509)
T ss_pred hhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH-----
Confidence 45688999999999999999999999999655555444 459999999999999999999999999997766554
Q ss_pred CChhHHHHH-HHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCC-hhHHHHHHHHH
Q 037996 81 AKPAVWHMC-AYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGND-SKSLILLIGWL 158 (535)
Q Consensus 81 ~~~~~~~l~-~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~~~~~~~ 158 (535)
+++|+++ .+.++.|+|.|+.+.++..++..||+|||+.|+|+..++.|+|..+++++...+++.. |++..+..+ .
T Consensus 132 --~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~-~ 208 (509)
T KOG2504|consen 132 --TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFG-G 208 (509)
T ss_pred --hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHH-H
Confidence 5688877 5899999999999999999999999999999999999999999999999999988874 444443333 3
Q ss_pred HHHHHHHHHhhhcccCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhh
Q 037996 159 PAAISVIFVYTIRIIPV-VQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIR 237 (535)
Q Consensus 159 p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (535)
..+..++.....++... .++. +.+...
T Consensus 209 ~~l~~~~~~~~~rp~~~~~~~~--~~~~~~-------------------------------------------------- 236 (509)
T KOG2504|consen 209 ISLNVLVAGALLRPLSPPKKPN--EEKDLR-------------------------------------------------- 236 (509)
T ss_pred HHHHHHHHHHHcCCCCcCCCch--hhhhhc--------------------------------------------------
Confidence 33444444444443222 1110 000000
Q ss_pred HHHhhhhcCCCCCCCcccCCcCccCCCCCCC-CCCCCCCCCCccccccccC-CCCCC-CCCcHHHhhhhHHHHHHHHHHH
Q 037996 238 EELAIWNLKKQPPSEVTVEKPAEIEPKKEPL-PPPDEPKGSTKSCFLTICD-KPPRG-EDYTILQALLSIDMLILFVATF 314 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 314 (535)
. .+...+..+.+. +.+...++..... ..+++ +..+..+++.+ .+.+. ...-..+++|++.|+.+.+...
T Consensus 237 ~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~ 308 (509)
T KOG2504|consen 237 N---SAASVESTPKPV--ELRISERDSGLKKLSLSNL---ATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNL 308 (509)
T ss_pred c---cccccccccccc--ccccccCCCCCCcccccch---hhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHH
Confidence 0 000000000000 0000000000000 00000 00000000001 01100 0011267899999999998877
Q ss_pred hhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc
Q 037996 315 GGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF 394 (535)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~ 394 (535)
+.....+....+++.+.++.|+++.+++.+.++.++.+++||++.|++.|+... ++.+...++.+..+++...+..
T Consensus 309 ~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~----~~~~~~~~~ll~~gl~~~~~p~ 384 (509)
T KOG2504|consen 309 FAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI----RALVLFLLTLLIAGLARLFLPF 384 (509)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc----chHHHHHHHHHHHHHHHHHHHH
Confidence 776666656667777778999999999999999999999999999999999852 3456666677777777655555
Q ss_pred c-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCC
Q 037996 395 P-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNR 473 (535)
Q Consensus 395 ~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~ 473 (535)
. +.+.++...+++|++.|...++.+.++.|+.+.++...++|+......++.++ ||++.|+++|.
T Consensus 385 ~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~-gpPiag~~~d~------------- 450 (509)
T KOG2504|consen 385 ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV-GPPIAGLLYDI------------- 450 (509)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc-Ccccceeeeec-------------
Confidence 4 56788889999999999999999999999999999999999999999999977 99999999998
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 474 SDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 474 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
+++|...|+.++++.+++..+.++..
T Consensus 451 ----------tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 451 ----------TGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ----------cCCeeeehhhcChHHHHHHHHHHHhH
Confidence 55699999999999888886665555
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=276.65 Aligned_cols=398 Identities=14% Similarity=0.028 Sum_probs=242.7
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
..++...|.+++|+|+|.++.+++.+.+.+++.+ .++.|+++||+|||+++.++.++..++.+..++...+.. ++++
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~ 123 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS--VSLG 123 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc--chHH
Confidence 4567778999999999999999987777777755 999999999999999999998888887666654433333 4689
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.+++.|+++|++.+...+....++.+|+| ++||+++|+...+.++|..+.+.+........
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~------------------ 185 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF------------------ 185 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh------------------
Confidence 99999999999999999999999999997 57999999998888888877653322111100
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
. . .+++..+.....+.+. .. ++.....++
T Consensus 186 ---~-~--------~~~~~~f~~~g~~~~~---~~-----------------------------i~~~~~~~~------- 214 (467)
T PRK09556 186 ---F-D--------GHVIGMFIFPSIIALI---IG-----------------------------FIGLRYGSD------- 214 (467)
T ss_pred ---c-c--------CcchhHHHHHHHHHHH---HH-----------------------------HHHHHhCCC-------
Confidence 0 0 0011111100000000 00 000000010
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
+|++....+ +++..++..+ +++ + +++ +++....+.-.++.+|+|.+|...+..++..........
T Consensus 215 ---~p~~~~~~~-----~~~~~~~~~~---~~~-~--~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 279 (467)
T PRK09556 215 ---SPEELGWGK-----AEEIFGEPIS---EED-K--ETE-STDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDN 279 (467)
T ss_pred ---ChhhcCCCC-----hhhcccCccc---hhh-h--ccc-cccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 010000000 0000000000 000 0 000 000000000112368999999988877766555444455
Q ss_pred chH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 326 NLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 326 ~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
+.| ++.+++|++..++++..+...++..+|++++|+++||+++|+. ..............+.+... +.....+.
T Consensus 280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T PRK09556 280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA----LVACIALALIIFTLGVYQHATSEYMYLAS 355 (467)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 555 4445679999999999999999999999999999999976531 11111111111111122222 33344455
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhh-HHHHHhHhHhHhhhhh-hhhhHhhhhcCCCCCcccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPL-GSYILNVKVTGSLYDH-QAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i-g~~i~~p~i~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 481 (535)
.++.|++...........+.|.+|++.+|++.|+.+..+.+ |..+ +|.+.|++.|. ...... .-
T Consensus 356 ~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~-~~~~~G~i~~~~~~g~~~-------------~~ 421 (467)
T PRK09556 356 LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF-AKVGLGMIADPTKNGTPI-------------FG 421 (467)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH-HhhhHHHHhccccccccc-------------cc
Confidence 66667544333334446677999999999999999999987 5555 99999999992 100000 00
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
....+|+..|.++.++.+++.++.+++.
T Consensus 422 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 422 YTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0022499999998888888776665553
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=267.51 Aligned_cols=356 Identities=20% Similarity=0.284 Sum_probs=252.3
Q ss_pred ccCcccccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 037996 3 GAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIA 81 (535)
Q Consensus 3 ~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~ 81 (535)
..|..|+++.+.|.+++++|+|..+.+++.+.+.++..+ .++.|+++||+|||+++.++.++..++.+..+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~------ 88 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA------ 88 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH------
Confidence 346678899999999999999999999987777777765 9999999999999999999999999987766554
Q ss_pred ChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHH-HHHHHHHH
Q 037996 82 KPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLI-LLIGWLPA 160 (535)
Q Consensus 82 ~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~-~~~~~~p~ 160 (535)
++++.+++.|++.|++.+..++.....+.+|+||+|++++++...+.++|..+.+++...+.+...|++. ...++..+
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 167 (377)
T TIGR00890 89 -DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL 167 (377)
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6789999999999999999988888889999999999999999999888887766555444332212111 11111111
Q ss_pred HHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHH
Q 037996 161 AISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (535)
+..+.... ..++
T Consensus 168 ~~~~~~~~------------------------------------------------------------------~~~~-- 179 (377)
T TIGR00890 168 LVIVLGAF------------------------------------------------------------------LIGY-- 179 (377)
T ss_pred HHHHHHHH------------------------------------------------------------------heec--
Confidence 11100000 0000
Q ss_pred hhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhch
Q 037996 241 AIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSS 320 (535)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 320 (535)
+++++ . + ++ + +. +.++.+.++.+|++++|......++.....
T Consensus 180 --------~~~~~-~-~--------------~~-----------~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (377)
T TIGR00890 180 --------PPGQL-I-K--------------TN-----------I-EV--SVKDYTVWEMLRTPQFWVLYLSFFLNAVSG 221 (377)
T ss_pred --------Cchhc-c-c--------------cC-----------c-cc--chhhhhHHHHHcCccHHHHHHHHHHHhHHH
Confidence 00000 0 0 00 0 00 001123467788888887776655443333
Q ss_pred hhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccC-c--
Q 037996 321 LTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPF-P-- 397 (535)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~-~-- 397 (535)
.......+++.++.|.++.+.+...++..++..+++++.|+++||++||+ .+..+.++..++.+.+...+ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 295 (377)
T TIGR00890 222 LLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK------TMSIVFGISAVGMAAMLFIPMLND 295 (377)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHHcccchh
Confidence 33334445556778888888888999999999999999999999997553 33445555555554444332 1
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcc
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVK 477 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 477 (535)
.......++.|++.+...+..+.++.|.+|+++++++.|+.+....+|..+ +|.+.|.+.|+.+
T Consensus 296 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g--------------- 359 (377)
T TIGR00890 296 VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIF-GGLIASHALTEIG--------------- 359 (377)
T ss_pred HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHH-HHHHHHHHHhhhc---------------
Confidence 223344566788888777888889999999999999999999999999977 9999999988744
Q ss_pred cccccccccchHHHHHHHHHHHHHH
Q 037996 478 ELICIGVKCYRLPFIILACVTCFGA 502 (535)
Q Consensus 478 ~~~~~~~~~~~~~f~~~~~~~~~~~ 502 (535)
|+..|.+.+++.+++.
T Consensus 360 ---------~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 360 ---------FEYTFIVTGAFALTSL 375 (377)
T ss_pred ---------hhhHHHHHHHHHHHhc
Confidence 8888888877766553
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=263.81 Aligned_cols=358 Identities=12% Similarity=0.058 Sum_probs=243.6
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
++.+...|.+++|+|+|++|.+++.+.+.++.. .+++.|++.||+|||+++..+.++++++.+.++++ ++++
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-------~~~~ 98 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-------PQSA 98 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-------cchH
Confidence 567788999999999999999997777777765 49999999999999999999999999998876543 5788
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
.+++.|+++|+|.+..++.....+.++||++|++++|+..++...|..+.+.+...+.+..
T Consensus 99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~------------------- 159 (393)
T PRK09705 99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS------------------- 159 (393)
T ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 9999999999999999998889999999989999999988776666665543332222111
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
.+|+..+..+... ..+.. .......+
T Consensus 160 -------------~~w~~~~~~~~~~---~~~~~------------------------------~~~~~~~~-------- 185 (393)
T PRK09705 160 -------------ETWYQTLAWWALP---AVVAL------------------------------FAWWWQSA-------- 185 (393)
T ss_pred -------------CCHHHHHHHHHHH---HHHHH------------------------------HHHHHHhc--------
Confidence 0121111100000 00000 00000000
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDN 326 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
++|++ + + +++. ..++.++++++|.+.+..++..........+
T Consensus 186 -~~~~~----------------~---------------~-~~~~-----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 227 (393)
T PRK09705 186 -REVAS----------------S---------------H-KTTT-----TPVRVVFTPRAWTLGVYFGLINGGYASLIAW 227 (393)
T ss_pred -CCCcc----------------c---------------c-CCCc-----CCcccccCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0 0000 0123446677776665554443333344445
Q ss_pred hHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-ccCcchHHHHHH
Q 037996 327 LGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-FPFPGSVYVASV 405 (535)
Q Consensus 327 ~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 405 (535)
.+.+.+++|.+..+++...++..+++.+|+++.|++.||+++| ..+..+..+..++..++. .+.. .......
T Consensus 228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~------~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~ 300 (393)
T PRK09705 228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR------KLLMLALVLQLVGFCGFIWLPLQ-LPVLWAM 300 (393)
T ss_pred HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHHHHHHccch-HHHHHHH
Confidence 5566677899999999999999999999999999999998654 333444445445444332 2221 1122334
Q ss_pred HHHhhhcchhhHHHHHHHHhhc-cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccccc
Q 037996 406 IIGFSFGAQLPLIFAIISELFG-LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGV 484 (535)
Q Consensus 406 l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (535)
+.|++.+..++.......+.++ ++++++.+|+.+....+++.+ +|.+.|++.|. .
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~-gp~~~G~l~~~-----------------------~ 356 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGL-APWFSGVLRSI-----------------------S 356 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------------------h
Confidence 5677777777777667777775 578999999999999999877 99999999998 3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 485 KCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 485 ~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
++|...|.+.++++++..++...+.+|++.
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 357 GNYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 458888988888887776666666655554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=252.17 Aligned_cols=385 Identities=16% Similarity=0.118 Sum_probs=269.1
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
.+|+...|.+.++.++|.+|++++.+.+.+.+.+ -++.|.++||.++|..+.+|+++..+..+++++. ++.+
T Consensus 46 knF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-------~s~~ 118 (448)
T COG2271 46 KNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-------PSLF 118 (448)
T ss_pred HhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh-------hHHH
Confidence 4678899999999999999999987777777765 8999999999999999999999988887777554 5788
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHH--HHHhcC-ChhHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVY--LAVYGN-DSKSLILLIGWLPAAI 162 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~--~~~~~~-~~~~~~~~~~~~p~~~ 162 (535)
.+.++.++.|.-+|+-.|++...++.||| +|||+..++.+++..+|+.+.+++. ..+... +|+..+++-+++.+++
T Consensus 119 ~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiv 198 (448)
T COG2271 119 LFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIV 198 (448)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 88999999999999999999999999997 6899999999999999999987665 333333 2222222222222222
Q ss_pred HHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhh
Q 037996 163 SVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAI 242 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (535)
.++..+..+..
T Consensus 199 al~~~~~~rd~--------------------------------------------------------------------- 209 (448)
T COG2271 199 ALILLFLLRDR--------------------------------------------------------------------- 209 (448)
T ss_pred HHHHHHHhCCC---------------------------------------------------------------------
Confidence 22222222211
Q ss_pred hhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhh
Q 037996 243 WNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLT 322 (535)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 322 (535)
|++..-. ..++-.+ |..|.. .+++++++-...+.-.+..++||..|.+++.++..+..-++
T Consensus 210 -------Pqs~GLP--~ie~~~~---d~~e~~-------~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~g 270 (448)
T COG2271 210 -------PQSEGLP--PIEEYRG---DPLEIY-------EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYG 270 (448)
T ss_pred -------ccccCCC--CHHHhhc---Cchhhh-------hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 1110000 0000000 000000 00000111000111234467999999999998887777777
Q ss_pred hhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-c--Ccc
Q 037996 323 AIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-P--FPG 398 (535)
Q Consensus 323 ~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~--~~~ 398 (535)
+..+.| |+.|.+|++..++++..+.+-.++..|.+++||+|||+-+. +|.+.-++.+++..+++..+-. + +..
T Consensus 271 i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg---rR~p~~~i~~~~i~~~~~~~w~~~~~~~~ 347 (448)
T COG2271 271 INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG---RRGPMALIFMLLITASLVLYWLAPNGSYL 347 (448)
T ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHHHHHcCCCccHH
Confidence 666555 45567799999999999999999999999999999998644 2334444444444444444332 2 235
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccc
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKE 478 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~ 478 (535)
...++.+++|+...+..-+......|..|.+..|++.|+...+.-+++..++....|++.|..+
T Consensus 348 l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g---------------- 411 (448)
T COG2271 348 LDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG---------------- 411 (448)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC----------------
Confidence 5667778889886665567778899999999999999999999988443558788888888744
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 479 LICIGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 479 ~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
|...|+++.+.++++.++.+.+..++++
T Consensus 412 --------W~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 412 --------WDGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred --------CcchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 9999999988888888776666654444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=266.06 Aligned_cols=378 Identities=16% Similarity=0.127 Sum_probs=236.2
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.++...|.+.+++|+|.++.+++.+.+.++.. ..++.|++.||+|||+++.++.++..++.++.+++ ++++
T Consensus 40 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 112 (434)
T PRK11663 40 KSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-------SSLW 112 (434)
T ss_pred hhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-------hHHH
Confidence 356778899999999999999997777777775 59999999999999999999999988887665443 5788
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHH-HHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLI-GWLPAAISV 164 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~ 164 (535)
.+++.|++.|++.|..++.....+.+|+| ++||+++|+...+.++|+.+.+.+.+.+.+...|++.+.. ++..++..+
T Consensus 113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 89999999999999888889999999997 5799999999988888887765444433332112211111 111111111
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+..+. .+++.+ +.
T Consensus 193 ~~~~~------------------------------------------------------------------~~~~p~-~~ 205 (434)
T PRK11663 193 FLCWR------------------------------------------------------------------LRDKPQ-AM 205 (434)
T ss_pred HHHHH------------------------------------------------------------------cCCCHh-hc
Confidence 00000 010000 00
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
..++.. + .+ ++ +++.++ +++ .++...++.-....++++.+|...+..++.........
T Consensus 206 ---~~~~~~---~-----~~----~~-~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (434)
T PRK11663 206 ---GLPSVG---E-----WR----HD-ALELAQ-----QQE-GAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAIN 263 (434)
T ss_pred ---CCCCcc---c-----cc----cc-ccccch-----hcc-ccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 00 00 000000 000 00000000001235678888887766555444333344
Q ss_pred cchHHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 037996 325 DNLGQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVA 403 (535)
Q Consensus 325 ~~~~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 403 (535)
.+.|.+. +++|++..+++...+++.+++.+|++++|+++||+.++++........++.....+.+..+...+.......
T Consensus 264 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK11663 264 DWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC 343 (434)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 4555555 567999999999999999999999999999999985442111111112222222222222222222222233
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.+.+|++...........+.|.+|+++++++.|+.++...+|..+ +|.+.|++.|+.+
T Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~p~~~g~l~~~~g--------------------- 401 (434)
T PRK11663 344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAAL-SGYPLAKVLEIWH--------------------- 401 (434)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHH-hcccHHHHHHhcc---------------------
Confidence 334444333333344567789999999999999999999999976 9999999998743
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
|+..|.+.+++.+++.+..+
T Consensus 402 ---~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 402 ---WTGFFVVISIAAGISALLLL 421 (434)
T ss_pred ---cHHHHHHHHHHHHHHHHHHH
Confidence 88899888888777665443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=267.19 Aligned_cols=381 Identities=14% Similarity=0.115 Sum_probs=245.2
Q ss_pred cccccccccHHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 037996 6 ATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPA 84 (535)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 84 (535)
..++++.+.|++.+++|+|.++.+++.+.+.+.. +..++.|+++||+|||++++.+.++..++.++++++ ++
T Consensus 34 ~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~ 106 (455)
T TIGR00892 34 FPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS-------SN 106 (455)
T ss_pred hhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-------hh
Confidence 4466788899999999999999999655555544 558999999999999999999998888886665443 45
Q ss_pred HHHHH-HHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 037996 85 VWHMC-AYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAIS 163 (535)
Q Consensus 85 ~~~l~-~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 163 (535)
++.++ ..|+++|++.+...+++..++.+|||++|++++|+...+..+|..+.+++...+.+...|++.+....+..+..
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~ 186 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHC 186 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 77776 45799999999877777888889999899999999998888888776554443333211211111111111110
Q ss_pred HHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhh
Q 037996 164 VIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIW 243 (535)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (535)
.+..+++ +++..
T Consensus 187 ~v~~~~~------------------------------------------------------------------~~~~~-- 198 (455)
T TIGR00892 187 CVCGALM------------------------------------------------------------------RPVGP-- 198 (455)
T ss_pred HHHHHHh------------------------------------------------------------------CCCCc--
Confidence 0000000 00000
Q ss_pred hcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhh
Q 037996 244 NLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTA 323 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 323 (535)
.++..+++ ++ ++ .++ +...++ . +..+..++..+....+.+++|+++...+..++........
T Consensus 199 -~~~~~~~~---~~----~~-----~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (455)
T TIGR00892 199 -SQRVSKSK---SK----EG-----LPP-DGSTKK---L-SKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAP 260 (455)
T ss_pred -cccccccc---cc----cc-----CCC-CCcccc---c-cccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccch
Confidence 00000000 00 00 000 000000 0 0000000001111135788999988777655443333333
Q ss_pred hcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchHHH
Q 037996 324 IDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVYV 402 (535)
Q Consensus 324 ~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 402 (535)
..+.+.+.++.|+++.+++.+.++.+++..++++++|+++||...++ .|...+..+.++.+++.++... .+.+.+++
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i 338 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP--HVQYLFSFALLFNGLTHLLCALAGDYTGLVI 338 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--HHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 44455556778999999999999999999999999999999742211 1222333333333333333332 34556667
Q ss_pred HHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccc
Q 037996 403 ASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICI 482 (535)
Q Consensus 403 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (535)
..++.|++.+...+...+++.|.+|++++++++|+.+....+|.++ +|.++|.+.|.
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-gp~i~G~l~~~---------------------- 395 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI-GPPLAGRLVDA---------------------- 395 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc-cccceeeeehh----------------------
Confidence 7888899988888888899999999999999999999999999977 99999999987
Q ss_pred ccccchHHHHHHHHHHHHHHHHH
Q 037996 483 GVKCYRLPFIILACVTCFGALVS 505 (535)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~~~l~ 505 (535)
.++|+..|++.+++.+++.+..
T Consensus 396 -~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 396 -TKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred -cCCcchHHHHhhHHHHHHHHHH
Confidence 3348888888887777665543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=260.34 Aligned_cols=393 Identities=13% Similarity=0.118 Sum_probs=238.1
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
++...|++.++ |+|+.+.+++.+...++.. .+++.|+++||+|||++++++.++..++.+.+++. .... .+++.+
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~--~~~~-~~~~~~ 123 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV--PWAT-SSIAVM 123 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhh--hccc-ccHHHH
Confidence 45677899888 9999999997666677665 59999999999999999999999988886655432 1111 257788
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVY--GNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~ 165 (535)
++.|++.|++.+..++.....+.+++| ++||+++|+...+.++|+.+.+++..... ..+|++.+++.+...++..++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 899999999999888877888899997 57999999988887777656554322111 011111111111111111111
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
..+. .+++
T Consensus 204 ~~~~------------------------------------------------------------------~~~~------ 211 (452)
T PRK11273 204 AFAM------------------------------------------------------------------MRDT------ 211 (452)
T ss_pred HHHH------------------------------------------------------------------ccCC------
Confidence 0000 0100
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
|++... + ++++.++ +.+++. + +.+++....++.-....+|++.+|...+..++.....+....
T Consensus 212 ----~~~~~~-~--~~~~~~~--~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 274 (452)
T PRK11273 212 ----PQSCGL-P--PIEEYKN--DYPDDY-N-------EKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 274 (452)
T ss_pred ----HhhcCC-C--Chhhhhh--cccccc-c-------cccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 0000000 000000 0 000000000010012367889999887776655444344444
Q ss_pred chHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc--c-CcchHH
Q 037996 326 NLGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF--P-FPGSVY 401 (535)
Q Consensus 326 ~~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~--~-~~~~~~ 401 (535)
+.|.+.++ .|++..+++....+..++..+++++.|+++||+++++ |.........+..++.+++.. . +....+
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 351 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN---RGATGVFFMTLVTIATIVYWLNPAGNPTVDM 351 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---cchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence 55665554 6898888888888899999999999999999996432 111222222222222222211 1 223333
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|.+..........++.|.+|++.+|++.|+.+....+++.+.+|.+.|.+.|+.+
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g------------------- 412 (452)
T PRK11273 352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG------------------- 412 (452)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-------------------
Confidence 4444555543333334445678999999999999999998888875547999999999844
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYK 522 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 522 (535)
|+..|.+++++++++++...++.+.+|++++|-.+|
T Consensus 413 -----~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (452)
T PRK11273 413 -----WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQK 448 (452)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhh
Confidence 899999998888888777766555454444433444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=250.92 Aligned_cols=350 Identities=14% Similarity=0.047 Sum_probs=226.2
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
..|+...|.+++|+|+|++|.+++.+.+.+++. .+++.|+++||+|||+++..+......+.+.. . .. ++++
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~--~---~~--~~~~ 80 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL--L---DP--FNYE 80 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH--H---Hh--ccHH
Confidence 457778899999999999999998777777775 48999999999999988765544443332111 1 11 3688
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHH-HHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLI-GWLPAAISV 164 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~ 164 (535)
.+++.|+++|+|++. .......+.||+| |+|++++++...+..+|..+.+.+...+.+...|+..+.. +.++++..+
T Consensus 81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 999999999999996 4556666789997 6899999999999889887765443333322222222111 222211111
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+..+. .++
T Consensus 160 ~~~~~------------------------------------------------------------------lp~------ 167 (368)
T TIGR00903 160 LVLAA------------------------------------------------------------------LPA------ 167 (368)
T ss_pred HHHHH------------------------------------------------------------------cCC------
Confidence 10000 000
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
+|++. + + . . +.++ .....++++++|.+|.+.+..++.....+.+.
T Consensus 168 ----~p~~~---~-----------~---~-----------~-~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 212 (368)
T TIGR00903 168 ----LPFQA---A-----------E---G-----------F-GFKD--AVKEFGALAGRKDLWIIGAILGFGVALFDNLA 212 (368)
T ss_pred ----CCCCC---C-----------C---C-----------c-chHH--HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0 0 0 0000 01135788999999999888887777666666
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
.+.|.+.++.|++.. .+....+..+.+. +..++++||..||+ .|+.......++.++....+... +....++.
T Consensus 213 ~wlp~~L~~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~~--~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-AGDAVALAILAGL---IGVAVIPDRVARAG--LRSIYIRAAALLIAAFFLALAFELNRLALFAF 286 (368)
T ss_pred HHHHHHHHHCCCChH-HHHHHHHHHHHHH---HHHHHhhHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 777777787888754 5555555555444 44689999986652 22232222333334433333333 33334445
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
..+.+++.....+...++.+|.+|++.||++.|+.+..+++++.+ +|++.+.+...
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~-~~~~~~~~~~~----------------------- 342 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA-LALAAMLFISS----------------------- 342 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH-HHHHHHHHhcC-----------------------
Confidence 555677777777778889999999999999999999999999966 88888877632
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGALVS 505 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~ 505 (535)
.+..|.+.++..+++.+..
T Consensus 343 ---~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 343 ---AEAYFTFLAILITIAFAIA 361 (368)
T ss_pred ---HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=253.26 Aligned_cols=380 Identities=16% Similarity=0.061 Sum_probs=246.1
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.++...|.+++++|+|..+.+++.+...++... .++.|++.||+|||+++.++.++..++.++.+++ ++++
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 83 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAYV 83 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCHH
Confidence 4567778999999999999999987777777754 9999999999999999999999988887766544 4689
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHH-HHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLI-GWLPAAISV 164 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~ 164 (535)
.+++.|++.|++.+...+....++.|++| ++|++++++.....++|..+.+.+...+.+...+++.+.. +...++..+
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 5799999999998888887766555444433222222211 111111111
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+..+..+++|+++
T Consensus 164 ~~~~~~~~~~~~~------------------------------------------------------------------- 176 (399)
T TIGR00893 164 LWLKFIPDPPQKA------------------------------------------------------------------- 176 (399)
T ss_pred HhhheecCCCCcc-------------------------------------------------------------------
Confidence 1111111000000
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
...++++ ++ + +. ++..++ .+.+++++.+....++.+++|+++...+..++.......+.
T Consensus 177 ------~~~~~~~-----~~-~--~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
T TIGR00893 177 ------KWLTEEE-----KY-I--VV-GGLLAE------QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFL 235 (399)
T ss_pred ------ccCCHHH-----Hh-h--cc-hhhccc------cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHH
Confidence 0000000 00 0 00 000000 00001111123345788899999888777665555444444
Q ss_pred cchHHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCC--chHHHHHHHHHHHHHHHHHhccCcchHH
Q 037996 325 DNLGQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMP--RPLMLTLVLVLSCIGLLLIAFPFPGSVY 401 (535)
Q Consensus 325 ~~~~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~--r~~~~~~~~~~~~i~~~~~~~~~~~~~~ 401 (535)
.+.+.+. +..|.++.+++.+.++..+++.+++++.|+++||+++|+... .......+.++..+........+.....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (399)
T TIGR00893 236 TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA 315 (399)
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 4555554 457888889999999999999999999999999998774110 0001111111111111111111222233
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+...+.+.+.....+....++.|.+|++++++++|+.+....++..+ +|.+.|.+.|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~~~i~g~l~~~--------------------- 373 (399)
T TIGR00893 316 LALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIV-GPIVIGAIAAT--------------------- 373 (399)
T ss_pred HHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhh-hhHHhhhhccC---------------------
Confidence 33333444333367788899999999999999999999999999977 99999999987
Q ss_pred cccccchHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
.++|+..|.+.+++.+++.++.+
T Consensus 374 --~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 374 --TGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHH
Confidence 33478888888877777665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=252.38 Aligned_cols=373 Identities=13% Similarity=0.084 Sum_probs=235.6
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
..+...|.+++|+|+|.++++++.+.+.++.. .+++.|++.||+|||+++.++.+++.++.++.+++ ++++.
T Consensus 26 ~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------~~~~~ 98 (412)
T TIGR02332 26 NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA-------TGPES 98 (412)
T ss_pred hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-------cCHHH
Confidence 34556789999999999999998777777775 48999999999999999999999999987776543 56889
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC------ChhHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN------DSKSLILLIGWLPA 160 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~------~~~~~~~~~~~~p~ 160 (535)
+++.|+++|++.+..++....++.||+| ++||+++|+...+.++|..+.+.+...+.+. ..|++.+....++.
T Consensus 99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~ 178 (412)
T TIGR02332 99 LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPS 178 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHH
Confidence 9999999999999999988889999998 5799999999988888887766655555421 22333333333332
Q ss_pred -HHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHH
Q 037996 161 -AISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREE 239 (535)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (535)
+..++..+++++.|++++...+..+-. .++.
T Consensus 179 l~~~~~~~~~~~~~p~~~~~l~~~~~~~------------------------------------------------~~~~ 210 (412)
T TIGR02332 179 VILGVMTWFWLDDSPDKAKWLDEEDKKA------------------------------------------------LKEM 210 (412)
T ss_pred HHHHHHHhhccCCCcccCCCCCHHHHHH------------------------------------------------HHHH
Confidence 222222223333332111000000000 0000
Q ss_pred HhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhc
Q 037996 240 LAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGS 319 (535)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (535)
.+ +.+. +.+++++ + . .+++. ......+.++++.+|...+.+++....
T Consensus 211 ~~-------~~~~--------------~~~~~~~---~-------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (412)
T TIGR02332 211 ID-------NDQL--------------TLEQPEG---A-------F-AHAAM-PQRSMLREIFTPAIMLYTLAYFCLTNT 257 (412)
T ss_pred HH-------hccc--------------ccccccc---c-------c-ccccc-cHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 00 0000 0000000 0 0 00000 001112233467888877776666555
Q ss_pred hhhhhcchHHHHhhc--CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-C
Q 037996 320 SLTAIDNLGQIGESL--GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-F 396 (535)
Q Consensus 320 ~~~~~~~~~~~~~~~--g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~ 396 (535)
...+..+.|.+.++. |+++.+++....+..+++.+|++++|+++||+++|+ .......++..++..+.... +
T Consensus 258 ~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~-----~~~~~~~~~~~~~~~~~~~~~~ 332 (412)
T TIGR02332 258 LSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK-----HHTALPYLFAAAGWLLASATDH 332 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH-----HHHHHHHHHHHHHHHHHHhcCC
Confidence 555566677777764 667778888899999999999999999999997542 22222233333333222222 2
Q ss_pred cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCc
Q 037996 397 PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476 (535)
Q Consensus 397 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 476 (535)
....+....+.+++.....+.......|.+|++++++++|+.+....+|+++ +|.+.|.+.|.
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~-~p~~~g~i~~~---------------- 395 (412)
T TIGR02332 333 NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL-SPFLIGILKDA---------------- 395 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh-hhhhccccccc----------------
Confidence 2222222233333333333444455567899999999999999999999977 99999999987
Q ss_pred ccccccccccchHHHHHHHHHH
Q 037996 477 KELICIGVKCYRLPFIILACVT 498 (535)
Q Consensus 477 ~~~~~~~~~~~~~~f~~~~~~~ 498 (535)
.++|+..|.+.+++.
T Consensus 396 -------~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 396 -------TGSFNSGLWFVAALL 410 (412)
T ss_pred -------CCCCchhHHHHHHHH
Confidence 345888887766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=257.32 Aligned_cols=377 Identities=12% Similarity=0.101 Sum_probs=230.6
Q ss_pred ccccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH
Q 037996 7 TYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV 85 (535)
Q Consensus 7 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 85 (535)
.+.++.+.|.+++++|+|.++.+++.+.+.++..+ .++.|+++||+|||+++.++.++..++.++.+++ +++
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------~s~ 124 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-------SSA 124 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------cCH
Confidence 34566778899999999999999987777777765 8999999999999999999998888886655433 457
Q ss_pred HHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037996 86 WHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISV 164 (535)
Q Consensus 86 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 164 (535)
+.+++.|+++|++.+.. ......+.+|+| ++||+++|+......+|+.+.+.+. |.+...
T Consensus 125 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~------------------~~i~~~ 185 (476)
T PLN00028 125 TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM------------------PLVFPL 185 (476)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 88889999999998865 345567889997 5799999998766556665543221 111111
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+ ...... ...+|+..+.....+.+.. .+ .. ....+
T Consensus 186 ~----~~~~~~--~~~gWr~~f~i~g~l~l~~---~l-----------------------------~~-~~~~~------ 220 (476)
T PLN00028 186 I----KDAGAP--SFTAWRIAFFVPGLLHIIM---GI-----------------------------LV-LTLGQ------ 220 (476)
T ss_pred H----HhcCCc--chhhhHHHHHHHHHHHHHH---HH-----------------------------HH-HHHcC------
Confidence 1 000000 0012333343211111000 00 00 00000
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
++|++. .+ +..+ +.+.++......+++.++++++|.+.+.+++.......+.
T Consensus 221 ---~~p~~~--~~-----------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (476)
T PLN00028 221 ---DLPDGN--YR-----------ELKK------------SGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMD 272 (476)
T ss_pred ---cCCCCc--hh-----------hHHh------------cCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 011100 00 0000 0000000011234667788898888776655444444444
Q ss_pred cchHHH-HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCC-CchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 325 DNLGQI-GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKM-PRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 325 ~~~~~~-~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~-~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.+.+.+ .++.|++..+++.+.++..+++.++++++|+++||+++|+.. .|+....+..++..+..+++... +.....
T Consensus 273 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 352 (476)
T PLN00028 273 NIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI 352 (476)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 444444 456799999999999999999999999999999999987543 34444444444444433333333 233344
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.+++.+...+...+++.+. +++++|+++|+.+..+.+|+.+ +|.+. +...
T Consensus 353 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i-~~~l~----~~~~------------------- 407 (476)
T PLN00028 353 VVMILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAVL-TQLLF----FTGS------------------- 407 (476)
T ss_pred HHHHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHHH-HHHHH----HhcC-------------------
Confidence 445556665555555555555555 4589999999998877776655 55443 3211
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
.++|+..|.+.+++.+++.++.++++
T Consensus 408 --~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 408 --SYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred --CccHhhHHHHHHHHHHHHHHHHHhee
Confidence 23489999999888888877776664
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=248.81 Aligned_cols=359 Identities=13% Similarity=0.071 Sum_probs=232.9
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.++...|.+.+++|+|+.+.+++.+...++... .++.|+++||+|||+++.++.++..++.++..+. ++++
T Consensus 32 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 104 (406)
T PRK11551 32 QSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA-------WDFP 104 (406)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHH
Confidence 3456778999999999999999987777777755 8999999999999999999998888776554332 4688
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHH-HHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLI-GWLPAAISV 164 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~ 164 (535)
.+++.|+++|++.+...+....++.|++| ++|++++++...+..+|+.+.+.+...+.+...|+..+.+ +..++...+
T Consensus 105 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK11551 105 SLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP 184 (406)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999997 6899999999888877776654332222111111111111 111111000
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+.... .+++
T Consensus 185 ~~~~~------------------------------------------------------------------l~~~----- 193 (406)
T PRK11551 185 LLMRW------------------------------------------------------------------LPES----- 193 (406)
T ss_pred HHHHh------------------------------------------------------------------CCCC-----
Confidence 00000 0000
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
++..++ + .++ + + .++. .....+..+.+..+..+...++.....+...
T Consensus 194 -----~~~~~~-~-------------~~~---~-------~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (406)
T PRK11551 194 -----RAFAQA-A-------------GAG---K-------Q-RAPV---LRALFGEGRATATLLLWISYFFTLIVLYFLL 240 (406)
T ss_pred -----hhHHhc-c-------------Ccc---h-------h-hhhh---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 000 0 0 0000 0000000111222333333333222233344
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
.+.|.+.++.|+++.+.+...+...++..+++++.|+++||+++| ..+....+...++.+.+... +.+.+.+.
T Consensus 241 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (406)
T PRK11551 241 NWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR------RVVLLIYAGILASLAALAAAPSFAGMLLA 314 (406)
T ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 456677778899999999999999999999999999999999654 23333334444444433333 34445566
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.++.|++.+...+...+++.|.+|+++++++.|+.+....++..+ +|.+.|.+.++.
T Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~---------------------- 371 (406)
T PRK11551 315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMA-GPLLAGQLLALG---------------------- 371 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHH-HhhhHhhhhccC----------------------
Confidence 677788777777888889999999999999999999999999977 999999999872
Q ss_pred cccchHHHHHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
++|...+.....+.+++.++.+.
T Consensus 372 -~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 372 -RSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHH
Confidence 23666676666666655554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-28 Score=242.46 Aligned_cols=346 Identities=12% Similarity=-0.005 Sum_probs=235.2
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCA 90 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 90 (535)
...|.+++++|+|+++.+++.+.+.++.. ..++.|.+.||+|||+++..+.+++.++.++.+++ ++++.+++
T Consensus 30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~ 102 (390)
T PRK03545 30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-------WNFTVLLI 102 (390)
T ss_pred cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHH
Confidence 35689999999999999997666766664 58999999999999999999999999887766443 57899999
Q ss_pred HHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Q 037996 91 YICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYT 169 (535)
Q Consensus 91 ~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 169 (535)
.|+++|++.+..++....++.+++| +||++++|+...+.++|..+.+++...+.+..
T Consensus 103 ~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~---------------------- 160 (390)
T PRK03545 103 SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL---------------------- 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh----------------------
Confidence 9999999999988888999999997 68999999998888787766543333222211
Q ss_pred hcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCC
Q 037996 170 IRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQP 249 (535)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (535)
+++..+.......+... ..... . .
T Consensus 161 -----------gw~~~f~~~~~~~~l~~--------------------------------~~~~~--~-----------~ 184 (390)
T PRK03545 161 -----------GWRTTFLAIGGGALITL--------------------------------LLLIK--L-----------L 184 (390)
T ss_pred -----------cHHHHHHHHHHHHHHHH--------------------------------HHHHH--h-----------C
Confidence 12222221110000000 00000 0 0
Q ss_pred CCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhh-hhcchH
Q 037996 250 PSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLT-AIDNLG 328 (535)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 328 (535)
|++++ + + + .+..+.++.+|++.++......++....... ..+.++
T Consensus 185 ~~~~~------------------~-----------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (390)
T PRK03545 185 PLLPS------------------E-----------H--S---GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEP 230 (390)
T ss_pred CCCCC------------------C-----------C--c---chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0 0 0011346788888887655544433322222 223344
Q ss_pred HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHH-Hhcc-CcchHHHHHHH
Q 037996 329 QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLL-IAFP-FPGSVYVASVI 406 (535)
Q Consensus 329 ~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~~-~~~~~~~~~~l 406 (535)
++.+..|+++.+++.+.++..+++.+++++.|+++||+++| ... .+..+...+... .... +.+.+++..++
T Consensus 231 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 303 (390)
T PRK03545 231 FVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG------FLL-IAIALLLVCLLLLLPAANSEWHLSVLSIF 303 (390)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh------HHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 44445689999999999999999999999999999998543 222 233333333222 2222 34556667778
Q ss_pred HHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccccccc
Q 037996 407 IGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKC 486 (535)
Q Consensus 407 ~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (535)
.|++.+...+.....+.+..| ++++++.|+.+....+|..+ ||.+.|.+.|+.+
T Consensus 304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-G~~~~G~~~~~~g------------------------ 357 (390)
T PRK03545 304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA-GALLGNQVSLHLG------------------------ 357 (390)
T ss_pred HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC------------------------
Confidence 888877666666777888766 68899999999989999977 9999999999854
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 037996 487 YRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 487 ~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
++..|.+.+.+.+++.+......
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 358 LSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc
Confidence 88899888888887776654444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=248.42 Aligned_cols=340 Identities=11% Similarity=0.062 Sum_probs=199.8
Q ss_pred ccccccHHHHHHcCCChhh-hHHH-----HHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 037996 9 LFGTYSKDIKASLGYDQST-LNLL-----GFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIA 81 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~-~~~~-----~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~ 81 (535)
.++...|.+.++|+.+.++ .+++ .+...++..+ ++++|+++||+|||+++.++.+++++++++++++
T Consensus 34 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~------ 107 (490)
T PRK10642 34 VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI------ 107 (490)
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc------
Confidence 4566778999999754433 2332 2444455544 8999999999999999999999999998876544
Q ss_pred ChhHH--------HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHH---h-----
Q 037996 82 KPAVW--------HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAV---Y----- 144 (535)
Q Consensus 82 ~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~---~----- 144 (535)
+++. .++++|+++|+|.|..++.+..++.||+| |+||++.++...+..+|..+.+.+...+ +
T Consensus 108 -~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~ 186 (490)
T PRK10642 108 -PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANF 186 (490)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 4454 37899999999999999999999999997 6899999998776655554433221111 0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHH
Q 037996 145 GNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGC 224 (535)
Q Consensus 145 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (535)
.+..|++.+.++.++.+..++ +....|+ +++
T Consensus 187 ~~~gWR~~f~i~~~~~l~~~~---~~~~~~e-------sp~--------------------------------------- 217 (490)
T PRK10642 187 LDWGWRIPFFIALPLGIIGLY---LRHALEE-------TPA--------------------------------------- 217 (490)
T ss_pred cCccHHHHHHHHHHHHHHHHH---HHHcCCC-------Chh---------------------------------------
Confidence 011122222221111110000 0000000 000
Q ss_pred HHHhhhhhhHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhh-
Q 037996 225 IVLLFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLS- 303 (535)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 303 (535)
+.+++++.++ .++ + +. .+ .+..+.++.+++
T Consensus 218 ------------------~~~~~~~~~~------------------~~~---~------~~-~~---~~~~~~~~~~~~~ 248 (490)
T PRK10642 218 ------------------FQQHVDKLEQ------------------GDR---E------GL-QD---GPKVSFKEIATKH 248 (490)
T ss_pred ------------------HHHHHHhhhh------------------hcc---c------cc-cc---cccCCHHHHHHHh
Confidence 0000000000 000 0 00 00 011234455543
Q ss_pred HHHHHHHH-HHHhhhhchhhhhcchHHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHH
Q 037996 304 IDMLILFV-ATFGGLGSSLTAIDNLGQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLV 381 (535)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 381 (535)
++.+.... ..++.....+.+..+.|.+. +.+|++..+.........++..++.++.|+++||++|| ..+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr------~~~~~~ 322 (490)
T PRK10642 249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR------PFVILG 322 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHH
Confidence 22222222 22222222223334555555 45688887777777788888999999999999999755 333333
Q ss_pred HHHHH-HHHH--HHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 382 LVLSC-IGLL--LIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 382 ~~~~~-i~~~--~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
.++.. .+.. ..... +...+++..++.|++.+...+....++.|.+|++.|+++.|+.+....+++.+ +|.+.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~-~p~i~g~l 401 (490)
T PRK10642 323 SVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGL-TPTLAAWL 401 (490)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33222 2221 11122 23345556667777777777777888899999999999999866556666645 89999998
Q ss_pred hhh
Q 037996 458 YDH 460 (535)
Q Consensus 458 ~~~ 460 (535)
.+.
T Consensus 402 ~~~ 404 (490)
T PRK10642 402 VES 404 (490)
T ss_pred HHH
Confidence 875
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=258.09 Aligned_cols=158 Identities=15% Similarity=0.071 Sum_probs=125.6
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
.+...|.+.++++++..+.+++.+...++.++ .+++|+++||+|||++++++.++..++.++.+++ ++++.+
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa-------~s~~~l 258 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV-------QGYGFF 258 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-------hhHHHH
Confidence 45567899999999999999987777788765 8999999999999999999999988887666443 568999
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC-------------ChhHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN-------------DSKSLILL 154 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~-------------~~~~~~~~ 154 (535)
+++|+++|+|.|...+....++.|++| ++||++++++..+..+|..+.+.+...+... ..|++++.
T Consensus 259 lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~ 338 (742)
T TIGR01299 259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHH
Confidence 999999999999999999999999998 5799999999888888887766555444321 23556666
Q ss_pred HHHHHHHHHHHHHhhhcccC
Q 037996 155 IGWLPAAISVIFVYTIRIIP 174 (535)
Q Consensus 155 ~~~~p~~~~~~~~~~~~~~~ 174 (535)
+..+|.+..++..+++++.|
T Consensus 339 i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 339 VCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 66677766665555555433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=244.79 Aligned_cols=385 Identities=13% Similarity=0.104 Sum_probs=234.4
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
.+....|.+++ +|+|+++.+++.+.+.++.. ..++.|+++||+|||+++.++.++..++.++.+.. .... .+++.
T Consensus 45 ~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~ 120 (438)
T TIGR00712 45 NFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFV--PWAT-SSIAI 120 (438)
T ss_pred cHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcc--cccc-chHHH
Confidence 34556677775 69999999997766777665 49999999999999999999988888886654322 1111 35677
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC-ChhHHHHHH-HHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN-DSKSLILLI-GWLPAAISV 164 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~-~~~~~~~~~-~~~p~~~~~ 164 (535)
+++.|++.|++.+..++.....+.+++| ++||+++|+..++.++|+.+.+++....... ..|+..+.. +...++..+
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~ 200 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 8899999999999988888888999996 6899999999888888887766444332221 111111111 111111111
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+..+. .+++.++.+
T Consensus 201 ~~~~~------------------------------------------------------------------~~~~~~~~~ 214 (438)
T TIGR00712 201 FAFAM------------------------------------------------------------------MRDTPQSCG 214 (438)
T ss_pred HHHHh------------------------------------------------------------------ccCCHHhcC
Confidence 10000 111000000
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
.++. + +.++ +.+++ . .++. +.+...++....+.+|++.+|...+..++.....+...
T Consensus 215 ----~~~~----~-----~~~~--~~~~~---~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T TIGR00712 215 ----LPPI----E-----EYRN--DYPDD---Y----NEKA-EQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVL 271 (438)
T ss_pred ----CCCc----h-----hccc--ccccc---c----cccc-ccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0000 00000 0 0000 00000001111246788999888766555444434445
Q ss_pred cchHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-c--CcchH
Q 037996 325 DNLGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-P--FPGSV 400 (535)
Q Consensus 325 ~~~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~--~~~~~ 400 (535)
.+.|.+.++ .|+++.++++...+..+.++++++++|+++||+++++. ............++.+.+.. . +.+..
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR---GATGVFFMTLVTIAVIVYWMNPAGNPLVD 348 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 566666654 69999999999999999999999999999999965432 12111111111222222221 1 22223
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
+...++.|++...........+.|.+|++.+|++.|+.+....+++.+++|.+.|.+.|+.+
T Consensus 349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g------------------ 410 (438)
T TIGR00712 349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG------------------ 410 (438)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc------------------
Confidence 33344445543332233335678999999999999999988888754449999999999743
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVIRTR 513 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~ 513 (535)
|..+|+++.++.+++.+..+++.+|+|
T Consensus 411 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 411 ------WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 888998888888888877777666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=242.67 Aligned_cols=356 Identities=17% Similarity=0.163 Sum_probs=227.8
Q ss_pred ccccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH
Q 037996 7 TYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV 85 (535)
Q Consensus 7 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 85 (535)
...++...|.+.+++|+|..+.+++.+...++..+ .++.|+++||+|||+++.++.++..++.++.+++ +++
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 83 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TSL 83 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hhH
Confidence 34667788999999999999999987777777755 9999999999999999999999998887776544 468
Q ss_pred HHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHHH
Q 037996 86 WHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYG-N-DSKSLILLIGWLPAAI 162 (535)
Q Consensus 86 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~-~-~~~~~~~~~~~~p~~~ 162 (535)
+.+++.|++.|++.+...+....++.+++| ++|++++++...+..+|..+.+++....+. . ++++.+...+...++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 899999999999999999999999999997 579999999988888887776533222221 1 1111111111111111
Q ss_pred HHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhh
Q 037996 163 SVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAI 242 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (535)
.++..+. .+++
T Consensus 164 ~~~~~~~------------------------------------------------------------------~~~~--- 174 (379)
T TIGR00881 164 SLICFLL------------------------------------------------------------------LRDS--- 174 (379)
T ss_pred HHHHhee------------------------------------------------------------------eCCC---
Confidence 1100000 0100
Q ss_pred hhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhh
Q 037996 243 WNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLT 322 (535)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 322 (535)
+++....+ .+++++ ++.+ ++ +++++++....+...++.+++|.+|...+..++.......
T Consensus 175 -------~~~~~~~~---~~~~~~--~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (379)
T TIGR00881 175 -------PQSCGLPP---AEEMPN--EEPD----GD----AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG 234 (379)
T ss_pred -------ccccccCc---cccCcc--cccc----cc----cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 00000000 000000 0000 00 0000011111122346678899998887766655444444
Q ss_pred hhcchHHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-c--Ccc
Q 037996 323 AIDNLGQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-P--FPG 398 (535)
Q Consensus 323 ~~~~~~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~--~~~ 398 (535)
+..+.+.+. +..|+++.+++...++..+++.+++++.|++.||..+++ |............++...... + +..
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (379)
T TIGR00881 235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR---RGPLAVFFMALIIVSLLVYWLNPAANPL 311 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHHHHhcCcchhHH
Confidence 444444444 567999999999999999999999999999999875442 212222222222222222222 1 223
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
...+..++.|++.....+....+..|.+|+++++++.|+.+....+++.+ +|.+.|.+.|+.+
T Consensus 312 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g 374 (379)
T TIGR00881 312 MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGIL-AGLPLGYLADGFG 374 (379)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhh-hhhhHHHHHHhhc
Confidence 34445556666555555666678899999999999999999999999976 9999999999744
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-27 Score=239.38 Aligned_cols=339 Identities=13% Similarity=0.082 Sum_probs=221.1
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
....|.+++++|+|+.+.+++.+...++..+ +++.|+++||+|||+++.++.++..++.++.+++ ++++.++
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~ 110 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-------SGVIMLT 110 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-------hHHHHHH
Confidence 4456888999999999999987777787765 9999999999999999999999999987766544 5689999
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
++|+++|+|.+..++....++.|++| |+|++++++...+.++|..+.+.+...+.+...|++.+.+...+.+..+
T Consensus 111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~---- 186 (426)
T PRK12307 111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVI---- 186 (426)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999997 5799999999888888887765444333332222222222111111000
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCC
Q 037996 169 TIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQ 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
.+ +..
T Consensus 187 ~~------------------------------------------------------------------~~~--------- 191 (426)
T PRK12307 187 YI------------------------------------------------------------------RAR--------- 191 (426)
T ss_pred HH------------------------------------------------------------------HHH---------
Confidence 00 000
Q ss_pred CCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHH---hhhhchhhhhc
Q 037996 249 PPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATF---GGLGSSLTAID 325 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~ 325 (535)
.|++++.+++.. + ++ ++ + ++ ...+......++.++++.++....... ......+.+..
T Consensus 192 ~p~~~~~~~~~~-~------~~-~~---~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (426)
T PRK12307 192 APESKEWEEAKL-S------GK-GK---H------SQ--SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG 252 (426)
T ss_pred CCCChHHHHhhh-h------cc-cc---c------cc--cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 0 00 00 0 00 000001124567788888765443322 22222222344
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-ccCcchHHHHH
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-FPFPGSVYVAS 404 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 404 (535)
+.+.+.++.|+++.+.+...++..+++.+++++.|++.||+++| ..+..+.++..+..+.+. ..+.....+..
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (426)
T PRK12307 253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK------KTFSIGLLMSFLFIFPLFRIPQDNYLLLGA 326 (426)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 56666677899888888888999999999999999999999654 334444444444433332 22222222333
Q ss_pred HHHHhh--hcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 405 VIIGFS--FGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 405 ~l~g~~--~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
.+++++ .....+..+.++.|.+|++++|++.|+.+....+++.+ +|.+.|++.++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~-gp~~~g~l~~~~ 384 (426)
T PRK12307 327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF-NSMAATWLGITM 384 (426)
T ss_pred HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH-HHHHHHHHHHcc
Confidence 344432 23334567788899999999999999999999999976 999999998874
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=241.14 Aligned_cols=377 Identities=16% Similarity=0.110 Sum_probs=246.3
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
+...|.+.+|+|.+.++.+|+.+.+.++.. ..+++|+++||+|||++++++.+++.++.++++++ ++++.++
T Consensus 26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a-------~~~~~li 98 (495)
T PRK14995 26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS-------PTASWLI 98 (495)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-------CCHHHHH
Confidence 455799999999999999998777777775 48999999999999999999999999998776543 5789999
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhc-C-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH--
Q 037996 90 AYICIGANSQNFANTGALVTCVKNF-P-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI-- 165 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~f-p-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-- 165 (535)
++|+++|+|.+...+.....+.+++ | ++|++++|+.....++|..+.+.+.+.+.+...|++.+.. ..|+....+
T Consensus 99 ~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i-~~~~~~~~~~l 177 (495)
T PRK14995 99 ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI-NVPIVLVVMGL 177 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH-HHHHHHHHHHH
Confidence 9999999999999888888888887 5 5799999999998888887666555555555444443333 234333222
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC-ChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSF-PREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
....++..++++. ++.++.. .+........+..........+ +.+..........++ +..+...|.
T Consensus 178 ~~~~l~~~~~~~~---~~~d~~g--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~f~~~e~---- 244 (495)
T PRK14995 178 TARYVPRQAGRRD---QPLNLGH--ALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL----LGLFIRTQL---- 244 (495)
T ss_pred HHHhCCCCCCCCC---CCCChHh--HHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH----HHHHHHHHh----
Confidence 2222332222111 1111111 1111111112222221111111 111111111111111 111111110
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
+.++ +.-..+.+|+|.++...+..++.........
T Consensus 245 ----------------------------------------~~~~-----p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~ 279 (495)
T PRK14995 245 ----------------------------------------AASR-----PMIDMRLFTHRIILSGVVMAMTAMITLVGFE 279 (495)
T ss_pred ----------------------------------------cCCC-----CCcCHHHhCCcccHHHHHHHHHHHHHHHHHH
Confidence 0001 1111568888888777665555444433344
Q ss_pred cchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-c---Ccch
Q 037996 325 DNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-P---FPGS 399 (535)
Q Consensus 325 ~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~---~~~~ 399 (535)
.+.+.+.| .+|+++.+++....+..++..++.++.|++.||+++| ..+..+.++..++.+.+.. . +.+.
T Consensus 280 ~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~------~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 353 (495)
T PRK14995 280 LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR------LVATGGMALSALSFYGLAMTDFSTQQWQ 353 (495)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 44555555 5699999999999999999999999999999999643 3445566666655544332 1 2334
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
.+...++.|++.|...+.....+.+..|+++++.+.++.++...+|+.+ |+.+.|.+++.
T Consensus 354 ~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~-G~ai~g~i~~~ 413 (495)
T PRK14995 354 AWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGL-GIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5566788899999888888888889999999999999999999999977 99999998775
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=233.92 Aligned_cols=355 Identities=15% Similarity=0.144 Sum_probs=235.1
Q ss_pred ccccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH
Q 037996 7 TYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV 85 (535)
Q Consensus 7 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 85 (535)
.+.++...|++++++|+|.++.+++.+...++..+ .+++|++.||+|||+++..+.++..++.++.+++ +++
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-------~~~ 95 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-------HSL 95 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------chH
Confidence 45677889999999999999999977777777755 8999999999999999999999888886665432 568
Q ss_pred HHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037996 86 WHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISV 164 (535)
Q Consensus 86 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 164 (535)
+.+++.|+++|++.+..++.....+.+++| ++|++++++.....++|+.+.+.+...+..+.
T Consensus 96 ~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------- 158 (394)
T PRK03699 96 ALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS----------------- 158 (394)
T ss_pred HHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 889999999999999988888889999997 47999999887777777766554433332211
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
.+|+..+.....+.+... + +.. .++
T Consensus 159 ---------------~gw~~~f~~~~~~~~~~~---~------------------------------~~~-~~~------ 183 (394)
T PRK03699 159 ---------------IEWYWVYACIGLVYVAIF---I------------------------------LTL-FSE------ 183 (394)
T ss_pred ---------------ccHHHHHHHHHHHHHHHH---H------------------------------HHH-hcC------
Confidence 112222211000000000 0 000 000
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
.|+++ +++ + + + +++..+. ..++.++...+..++.......+.
T Consensus 184 ----~p~~~-~~~------------~-~----~---------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 225 (394)
T PRK03699 184 ----FPALG-KHA------------P-K----A---------DKPVAKE-------KWGIGVLFLAIAALLYILAQLTFI 225 (394)
T ss_pred ----Ccccc-ccC------------c-c----c---------cCccccc-------cCChHHHHHHHHHHHHHHHHHHHH
Confidence 01000 000 0 0 0 0000000 113455665555554433333444
Q ss_pred cchHHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchHHH
Q 037996 325 DNLGQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVYV 402 (535)
Q Consensus 325 ~~~~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 402 (535)
.+.|.+. +++|+++.+++.+.+.+.++..+|+++.|+++||+++|+ .+.....+..+...++.. ++.....+
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR------ILTVLAGLALVLMYLFVNTDDPSHLLY 299 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh------HHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 4555555 567999999999999999999999999999999996542 233333333343333333 34445556
Q ss_pred HHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccc
Q 037996 403 ASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICI 482 (535)
Q Consensus 403 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (535)
..++.|++.+..++...+...|..+ +++++..|.......+|+.+ +|.+.|++.|..+
T Consensus 300 ~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i-~p~~~G~l~~~~g-------------------- 357 (394)
T PRK03699 300 AILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTML-TFVVTSPIVAHFG-------------------- 357 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHHHhC--------------------
Confidence 6677888877777777777777665 56778889998888999977 9999999998744
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 483 GVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
++..+++.+++++++.++++.+.+
T Consensus 358 ----~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 358 ----LQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred ----chhhhhhhHHHHHHHHHHHHHHHH
Confidence 778888888887777665555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=248.36 Aligned_cols=369 Identities=14% Similarity=0.104 Sum_probs=233.9
Q ss_pred HcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcC
Q 037996 20 SLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANS 98 (535)
Q Consensus 20 ~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig 98 (535)
|++++..+.+++.+.+.+++.+ +++.|+++||+|||+++.++.++..++.++..++.. .+++.+++.|+++|++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHh
Confidence 7899999999987778888765 999999999999999999999988888666433211 2367788999999999
Q ss_pred hhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCC-hhHHHHHH-HHHHHHHHHHHHhhhcccCC
Q 037996 99 QNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGND-SKSLILLI-GWLPAAISVIFVYTIRIIPV 175 (535)
Q Consensus 99 ~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~~~~-~~~p~~~~~~~~~~~~~~~~ 175 (535)
.+..++....++.+|+| ++|++++|+...+..+|..+.+++.+.+.... .|+..+.+ ++..++..++.....+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~--- 221 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD--- 221 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC---
Confidence 99999999999999997 68999999999988888877665544443321 22211111 11111111000000000
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCccc
Q 037996 176 VQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTV 255 (535)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (535)
+|++.+.
T Consensus 222 -------------------------------------------------------------------------~p~~~~~ 228 (465)
T TIGR00894 222 -------------------------------------------------------------------------DPSIHPC 228 (465)
T ss_pred -------------------------------------------------------------------------CcccCCC
Confidence 1110000
Q ss_pred CCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHH-Hhhc
Q 037996 256 EKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQI-GESL 334 (535)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 334 (535)
+++. +. + .. ++.. ++++++ .++....++.++++.+|...+..++.......+..+.|.+ .+.+
T Consensus 229 ~~~~--~~--~--~i-~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~ 292 (465)
T TIGR00894 229 ISKF--EK--K--YI-NSSL--------QGQKGS-TRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVL 292 (465)
T ss_pred CCHH--HH--H--HH-Hhhc--------ccccCC-CCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 00 0 00 0000 000000 0112246789999999999887776655555555555555 4567
Q ss_pred CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH----HHHHHHHHHHHHHHHhc-c-CcchHHHHHHHHH
Q 037996 335 GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM----LTLVLVLSCIGLLLIAF-P-FPGSVYVASVIIG 408 (535)
Q Consensus 335 g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~----~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~l~g 408 (535)
|++..++++..++..++..++.++.|+++||+.+|+...++.. ..++.....+..+.... . +.....+...+.+
T Consensus 293 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (465)
T TIGR00894 293 RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLAN 372 (465)
T ss_pred CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999887654433322 11111111121212222 2 2222333344444
Q ss_pred hhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccch
Q 037996 409 FSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYR 488 (535)
Q Consensus 409 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (535)
.+.+...+.......|..| +..|.+.|+.+..+.+++++ +|.+.|++.+..+ .+.|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i-~p~l~g~~~~~~~---------------------~~~~~ 429 (465)
T TIGR00894 373 AVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLI-ASTLAGNILSQDS---------------------KNVWL 429 (465)
T ss_pred HHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHH-HHHhhheeeCCCC---------------------chHHH
Confidence 4445444444455556665 69999999999999999977 8999998887532 13488
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037996 489 LPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 489 ~~f~~~~~~~~~~~~l~~~l 508 (535)
..|.+.+++.+++.++..++
T Consensus 430 ~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 430 IVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHHHHHHHHeeee
Confidence 89999888888877655443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=224.69 Aligned_cols=362 Identities=16% Similarity=0.148 Sum_probs=244.3
Q ss_pred ccccccHHHHHHcCCChhhhHHH-HHhhhhccccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLL-GFFKDLGANVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
.|+...+.+.+|+|+|+.|.+++ ......+.+..++.|.+.||||.|++..++.++..+-.+..++ +... +++++
T Consensus 32 l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~--a~~~--~~~~~ 107 (417)
T COG2223 32 LFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAF--AVTY--PSTWQ 107 (417)
T ss_pred HHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHH--HccC--CchHH
Confidence 45667788999999999999995 4545555567999999999999999999999998888555543 3333 45789
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
+++++.+.|++.+-. .+....+++||| |++|.++|+...++ +|..+...+ .|.++....
T Consensus 108 ll~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g~GN-~G~av~q~~------------------~P~v~~~~g 167 (417)
T COG2223 108 LLVIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAGAGN-LGVAVAQLV------------------APLVAVAFG 167 (417)
T ss_pred HHHHHHHHhccccee-hcccccccccCChhhhhHHHHHhcccc-ccHHHHHHH------------------HHHHHHHHh
Confidence 999999999987664 678889999997 57999999998554 777665432 244433321
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
.-. +......+... +++..+. .+..-.
T Consensus 168 ~~~------------w~~~~~i~~~~---l~v~~v~------------------------------~~~~~~-------- 194 (417)
T COG2223 168 FLA------------WRNVAGIYVVA---LAIAAVL------------------------------AWLGMN-------- 194 (417)
T ss_pred hHH------------HHHHHHHHHHH---HHHHHHH------------------------------HHHHhC--------
Confidence 000 11111100000 0000000 000000
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDN 326 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
+.|+. + ...+...+...+..+++++.|.+.+.++..++....+..+
T Consensus 195 -d~p~~--------------------------------r-~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~ 240 (417)
T COG2223 195 -DVPEH--------------------------------R-ASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAY 240 (417)
T ss_pred -CChhh--------------------------------h-ccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0000000123466778999999999999888887777776
Q ss_pred hHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc--------Cc
Q 037996 327 LGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP--------FP 397 (535)
Q Consensus 327 ~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--------~~ 397 (535)
.+.+.+ ++|.++.+++.+.....+.+.+.|+++|+++||+|.+ +..+. ....++++....... +.
T Consensus 241 l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----rv~~~-~f~~~~~~~~~l~~~~~~~~~~~~~ 314 (417)
T COG2223 241 LPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----RVTLA-VFVGMALAAALLSLFLTGFGHGGSF 314 (417)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch-----hHHHH-HHHHHHHHHHHHHccccccccCcch
Confidence 666554 6799999999999999999999999999999999844 34333 333333433333222 12
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcc
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVK 477 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 477 (535)
....+..+..+++.|..-..+...+...++ ++.|.+.|++...+++|++. -|...|..++.
T Consensus 315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~-lp~~~g~~~~~----------------- 375 (417)
T COG2223 315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFF-LPLAFGVSLDL----------------- 375 (417)
T ss_pred HHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccc-hhHHHHHHHHh-----------------
Confidence 233333444455556555566667777776 69999999999999999977 68999999988
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 478 ELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 478 ~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
+++|...|+++..+.+++.++....+.|.
T Consensus 376 ------tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 376 ------TGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55699999999998888877666555444
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-26 Score=219.86 Aligned_cols=351 Identities=16% Similarity=0.141 Sum_probs=250.2
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
......|++.+|+|+|..+.++..+.+.++.. .+++...+.||+.||++++....++.++.++++++ +||+.
T Consensus 31 v~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA-------p~f~~ 103 (394)
T COG2814 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-------PSFAV 103 (394)
T ss_pred HHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh-------ccHHH
Confidence 34467899999999999999996666666665 59999999999999999999999999999988776 88999
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
+++.|++.|+..|..++....+..+..| +||+++++++.++..++..+.. |+...+--
T Consensus 104 Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~Gv---------------------PLGt~ig~ 162 (394)
T COG2814 104 LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGV---------------------PLGTFLGQ 162 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhc---------------------cHHHHHHH
Confidence 9999999999999999999999999996 6899999999999877665543 44333221
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
. .+||..|.....+++.. .+.. ...
T Consensus 163 ~------------~GWR~~F~~ia~l~ll~--~~~~------------------------~~~----------------- 187 (394)
T COG2814 163 L------------FGWRATFLAIAVLALLA--LLLL------------------------WKL----------------- 187 (394)
T ss_pred H------------hhHHHHHHHHHHHHHHH--HHHH------------------------HHh-----------------
Confidence 1 23445554222211100 0000 000
Q ss_pred CCCC-CCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 247 KQPP-SEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 247 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
-| .+. .+++..+..+..+.+|+|..|...+..++..+..+....
T Consensus 188 --lP~~~~---------------------------------~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ft 232 (394)
T COG2814 188 --LPPSEI---------------------------------SGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYT 232 (394)
T ss_pred --CCCccC---------------------------------CCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHH
Confidence 01 000 000001122347889999999998888877776666554
Q ss_pred chHHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-cc-CcchHHH
Q 037996 326 NLGQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-FP-FPGSVYV 402 (535)
Q Consensus 326 ~~~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~ 402 (535)
|+..+. +..|++.+..++..-.++++..+|+.++|++.|| +.| +.. .....+..+..+.+. .+ +.+...+
T Consensus 233 Yi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----~~l-~~~~~l~a~~~l~l~~~~~~~~~~~~ 305 (394)
T COG2814 233 YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR-----RAL-IAALLLLALALLALTFTGASPALALA 305 (394)
T ss_pred hHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch-----hHH-HHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 554444 4569999999999999999999999999999999 433 233 333344444444333 33 3344445
Q ss_pred HHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccc
Q 037996 403 ASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICI 482 (535)
Q Consensus 403 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (535)
..++.|+..............+ .-+++...+.++.....++|..+ |..++|.++|+.+
T Consensus 306 ~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~-GA~lGG~v~~~~g-------------------- 363 (394)
T COG2814 306 LLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIAL-GAALGGLVLDALG-------------------- 363 (394)
T ss_pred HHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc--------------------
Confidence 5555666655555555555666 33689999999999999999977 9999999999954
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 483 GVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
|....++.+.+.+++.++.++..+
T Consensus 364 ----~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 364 ----YAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888887766655443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=232.83 Aligned_cols=373 Identities=13% Similarity=0.143 Sum_probs=234.1
Q ss_pred cccccccHHHHH-HcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH
Q 037996 8 YLFGTYSKDIKA-SLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV 85 (535)
Q Consensus 8 ~~~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 85 (535)
+.|+...+.+.+ ++|+|++|++++.+...+.+ +..++.|.+.||+|+|+++.++.++..+.++..+++..... +++
T Consensus 51 ~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~--~s~ 128 (462)
T PRK15034 51 MLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN--TPF 128 (462)
T ss_pred HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC--CCH
Confidence 455666677765 89999999999666555555 45789999999999999999999999888776544322222 468
Q ss_pred HHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037996 86 WHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISV 164 (535)
Q Consensus 86 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 164 (535)
+.+++.|++.|++ +..+++....+++||| ++||+++|+..+...+|..+...+. |.+..+
T Consensus 129 ~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~------------------p~~i~~ 189 (462)
T PRK15034 129 GIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA------------------PLVIFV 189 (462)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH------------------HHHHHH
Confidence 9999999999998 7788999999999998 5699999998655556665543221 322211
Q ss_pred --HHHhhhcccCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHh
Q 037996 165 --IFVYTIRIIPVVQH-TSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELA 241 (535)
Q Consensus 165 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
...+-....+.... ....+.....+..+.+ +..+ +.++..
T Consensus 190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i-------v~~i--------------------------~~~~~~---- 232 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA-------IATI--------------------------AAWSGM---- 232 (462)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHH-------HHHH--------------------------HHHHhC----
Confidence 11111110000000 0001111111111000 0000 000000
Q ss_pred hhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchh
Q 037996 242 IWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSL 321 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 321 (535)
++.+ ++ +......++.+|+|+.|.+.+.+++.++...
T Consensus 233 -------~~~~----------------------------------~~--~~~~~~~~~vlk~~~~Wllslly~~tFG~fv 269 (462)
T PRK15034 233 -------NDIA----------------------------------SS--RASIADQLPVLQRLHLWLLSLLYLATFGSFI 269 (462)
T ss_pred -------CCcc----------------------------------cc--ccCHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 0000 00 0011234678999999999999988888777
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHH--HhccC---
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLL--IAFPF--- 396 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~--~~~~~--- 396 (535)
.+..+.|++.++ .++.........+..+...++++++|+++||++++ ..+.++.+.+.++.+. +..+.
T Consensus 270 g~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~------~vl~~~~i~~~i~~~~~~l~lp~~~~ 342 (462)
T PRK15034 270 GFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGV------RVTLINFIFMAIFSALLFLTLPGTGS 342 (462)
T ss_pred HHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch------HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777677777654 44433333334455677899999999999999754 2333334333333221 22221
Q ss_pred --cchHHHHHHHHHhhhcchhhHHHHHHHHhhcc---------------------CcccchhhHHhhhhhhHHHHHhHhH
Q 037996 397 --PGSVYVASVIIGFSFGAQLPLIFAIISELFGL---------------------KYYSTLFNCGQLASPLGSYILNVKV 453 (535)
Q Consensus 397 --~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~---------------------~~~g~~~g~~~~~~~ig~~i~~p~i 453 (535)
.+...+..+.+.++.|.....+.-++.+.+|+ ++.|.+.|+....+.+|+++ -|.+
T Consensus 343 ~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~-~p~~ 421 (462)
T PRK15034 343 GNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFF-IPQA 421 (462)
T ss_pred cHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccch-hhHH
Confidence 12222333333445555555666667777763 26889999999999999987 7889
Q ss_pred hHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 454 TGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 454 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
.|...+. +++|...|+.+.+..+++.++.++.+.|+
T Consensus 422 ~g~~~~~-----------------------~g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 422 FGMSLNM-----------------------TGSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHH-----------------------cCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999887 55699999999999999888887766444
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=241.76 Aligned_cols=408 Identities=13% Similarity=0.074 Sum_probs=234.5
Q ss_pred cccHHHHHHc--------CCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHH---hcC
Q 037996 12 TYSKDIKASL--------GYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAV---TGK 79 (535)
Q Consensus 12 ~~~~~l~~~~--------~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~---~~~ 79 (535)
...|.++++| +++..+.+++.+.+.++..+ ++++|+++||+|||++++++.+++.++.+..++.. ...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~ 112 (479)
T PRK10077 33 GTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSI 112 (479)
T ss_pred HhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3446677766 88999999987777888765 99999999999999999999999888866654320 000
Q ss_pred -CCC-hhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHh--------cCCh
Q 037996 80 -IAK-PAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVY--------GNDS 148 (535)
Q Consensus 80 -~~~-~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~--------~~~~ 148 (535)
..+ ..++.++++|+++|++.|..++....++.|++| |+||+++++...+..+|..+...+...+. ....
T Consensus 113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 113 GPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred cccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 011 235677899999999999999999999999997 67999999988887777765432222221 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHh
Q 037996 149 KSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLL 228 (535)
Q Consensus 149 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (535)
|++.+....++.+..++..+++++.|++....+..+...
T Consensus 193 Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~----------------------------------------- 231 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAE----------------------------------------- 231 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHH-----------------------------------------
Confidence 333333333333333222222222111000000000000
Q ss_pred hhhhhHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHH
Q 037996 229 FVPLAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLI 308 (535)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (535)
+..++...+++ .++..++..+..+.+++ .. +..+.......
T Consensus 232 -------------~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~ 272 (479)
T PRK10077 232 -------------GILRKIMGNTL----------------------ATQALQEIKHSLDHGRK-TG---GKLLMFGVGVI 272 (479)
T ss_pred -------------HHHHHHcCChh----------------------HHHHHHHHHHHHHHhhh-hh---hhhcchhHHHH
Confidence 00000000000 00000000000000000 00 00111000111
Q ss_pred H---HHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHH
Q 037996 309 L---FVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLS 385 (535)
Q Consensus 309 ~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 385 (535)
. ....+..........++.|++.++.|.+.....+...+.++.+.++.+++|+++||+++| ..+..+.+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r------~~~i~~~~~~ 346 (479)
T PRK10077 273 VIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK------PLQIIGALGM 346 (479)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HHHHHhHHHH
Confidence 1 111111111222234456777788898877777777788899999999999999999644 4555666666
Q ss_pred HHHHHHHhc---cCc-c-hHHHHHHHHHhhhcch-hhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 386 CIGLLLIAF---PFP-G-SVYVASVIIGFSFGAQ-LPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 386 ~i~~~~~~~---~~~-~-~~~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
+++.+++.. .+. . ......++++++.+.. .+....+++|.+|+++|+++.|+.+....++..+ ++.+.+.+.+
T Consensus 347 ~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~p~~~~ 425 (479)
T PRK10077 347 AIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYF-VSWTFPMMDK 425 (479)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHh
Confidence 666554432 122 1 2223444445444432 3567789999999999999999999999999976 7766665442
Q ss_pred hhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhh
Q 037996 460 HQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKF 524 (535)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 524 (535)
...... ..++...|++.++++++++++.+++.+|+|++..++.++..
T Consensus 426 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 472 (479)
T PRK10077 426 NSWLVA------------------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALW 472 (479)
T ss_pred ccchhh------------------hccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence 100000 11256778888877777777776677777765555555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=236.98 Aligned_cols=379 Identities=16% Similarity=0.085 Sum_probs=243.4
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
+...|.+.+++|.+..+.+|+.+.+.++..+ .++.|++.||+|||++++++.+++.++.++++.+ ++++.++
T Consensus 22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~ 94 (485)
T TIGR00711 22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-------PNLELMI 94 (485)
T ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-------CCHHHHH
Confidence 4567899999999999999987777777765 8999999999999999999999999887665322 5688999
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHHHHHH
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLI-LLIGWLPAAISVIFV 167 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~ 167 (535)
+.|+++|++.+...+....++.|++| ++|++++++...+..+|..+.+.+.+.+.+...|++. +......++..++..
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 174 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF 174 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999997 6899999999888888887665555555554333333 333222222222222
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhh-hcccCChh-hhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILE-KVMSFPRE-AYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
+..++++++.. ++.++...... ............. ...++.++ ............+. ....++.
T Consensus 175 ~~~~~~~~~~~---~~~d~~g~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----- 240 (485)
T TIGR00711 175 FILPRDKPAAS---ENFDFLGLLLL--SVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAII----AFVVWEL----- 240 (485)
T ss_pred HHcCCcccccc---CCCcHHHHHHH--HHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHH----HHHHHHH-----
Confidence 23332221111 11111111111 1111111111100 00011000 00000000000000 0001000
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
+.++ +....+.+++|+++...+..++.....+....
T Consensus 241 ---------------------------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (485)
T TIGR00711 241 ---------------------------------------TDDN-----PLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFY 276 (485)
T ss_pred ---------------------------------------cCCC-----CccCHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 0000 11114577888888776665544444444445
Q ss_pred chHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc---c--Ccch
Q 037996 326 NLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF---P--FPGS 399 (535)
Q Consensus 326 ~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---~--~~~~ 399 (535)
+.|.+.+ ..|+++.++++...+..++..+++++.|++.||+++| ..+..+..+.+++.+++.. + +.+.
T Consensus 277 ~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (485)
T TIGR00711 277 LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR------KLVTIGLILYAVGFYWRAFTFTPDTPFLA 350 (485)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH------HHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence 5566655 4699999999999999999999999999999999643 4455666666666555442 1 1234
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
.....++.|++.+..++.......+..|+++++++.|+.+....+|+.+ |+.+.+.+.++.
T Consensus 351 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i~g~~~~~~ 411 (485)
T TIGR00711 351 IALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI-GTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4556778899888877777777888899999999999999999999977 999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=242.84 Aligned_cols=407 Identities=14% Similarity=0.034 Sum_probs=229.1
Q ss_pred cccHHHHHHc-----CCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH
Q 037996 12 TYSKDIKASL-----GYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV 85 (535)
Q Consensus 12 ~~~~~l~~~~-----~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 85 (535)
...|.+.+++ +.++.+.+++.+...++..+ .+++|+++||+|||+++.++.++..++.++.+++... ....++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~ 115 (502)
T TIGR00887 37 LVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS-SPKSVM 115 (502)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc-ccchHH
Confidence 3446665542 34566778887777887765 9999999999999999999999988887665432110 010136
Q ss_pred HHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhc-------------------
Q 037996 86 WHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYG------------------- 145 (535)
Q Consensus 86 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~------------------- 145 (535)
+.++++|+++|++.|..++....++.|++| ++||+++++......+|..+.+.+...+..
T Consensus 116 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (502)
T TIGR00887 116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSC 195 (502)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 789999999999999999999999999997 679999999888877777555444332211
Q ss_pred ----CChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhh
Q 037996 146 ----NDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASA 221 (535)
Q Consensus 146 ----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (535)
+..|++.+.+..+|.+..++..+.+++.| ++.. .
T Consensus 196 ~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESp----------r~l~------------------~-------------- 233 (502)
T TIGR00887 196 VPAVDYMWRILIGFGAVPALLALYFRLTIPETP----------RYTA------------------D-------------- 233 (502)
T ss_pred cchhcccHHHHHHHHHHHHHHHHHHHHhCCCCH----------HHHH------------------H--------------
Confidence 11355555666666655544444444222 2210 0
Q ss_pred hHHHHHhhhhhhHhhhH-H-HhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHH
Q 037996 222 TGCIVLLFVPLAIAIRE-E-LAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQ 299 (535)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (535)
..++ + .++...+ ....+. ++ +. ++ .++ .+++ ++. .+.++++
T Consensus 234 -------------~~~~~~~a~~~~~~-~~~~~~--------~~-----~~-~~-~~~----~~~~-~~~---~~~~~~~ 276 (502)
T TIGR00887 234 -------------VAKDVEQAASDMSA-VLQVKI--------EA-----EP-DE-VEK----ASTA-VEV---PKASWSD 276 (502)
T ss_pred -------------hCcchHHHHHHHHH-Hhcccc--------cc-----Cc-cc-ccc----hhcc-ccc---hhhhHHH
Confidence 0000 0 0000000 000000 00 00 00 000 0000 000 0113455
Q ss_pred hhhh---HHHHHH----HHHHHhhhhchhhhhcchHHHHhhcCCCCccchh------------hHHHHHHhhHHHHHHhh
Q 037996 300 ALLS---IDMLIL----FVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKS------------FVSLVSIWNYFGRVFAG 360 (535)
Q Consensus 300 ~l~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~------------~~~~~~i~~~ig~~~~G 360 (535)
++++ ++.+.. ....++.....+....+.|.+.++.|+++.+++. ...+..++..++.++++
T Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 356 (502)
T TIGR00887 277 FFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV 356 (502)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5542 222111 1112222112223344567777888887654321 13344456677889999
Q ss_pred hhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc----Ccch-HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchh
Q 037996 361 FVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP----FPGS-VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLF 435 (535)
Q Consensus 361 ~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~----~~~~-~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~ 435 (535)
+++||++|| ..+..+.++..++..++... +... +....+...++.....++...+..|.+|++.|+++.
T Consensus 357 ~l~dr~gRR------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~ 430 (502)
T TIGR00887 357 FLVDIIGRK------PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAH 430 (502)
T ss_pred HHhhhhcch------hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHH
Confidence 999999765 33444544444443333221 1111 111111122222223456667789999999999999
Q ss_pred hHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 037996 436 NCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREF 515 (535)
Q Consensus 436 g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~ 515 (535)
|+.+..+.+++++ +|.+.+++.|..+...+. ....++...|.+++++++++.+.. ++.+|+|++
T Consensus 431 g~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~ 494 (502)
T TIGR00887 431 GISAASGKAGAII-GQFGFLYLAQHGDPTKGY--------------PTGIWMGHVLEIFALFMFLGILFT-LLIPETKGK 494 (502)
T ss_pred HHHHHHhhhHHHH-HHHHhhhhhccccccccc--------------cccccchHHHHHHHHHHHHHHHHh-eEeccCCCC
Confidence 9999999999977 999999998852100000 000125567888888777776544 455777765
Q ss_pred HHHhH
Q 037996 516 YRSDI 520 (535)
Q Consensus 516 ~~~~~ 520 (535)
..+++
T Consensus 495 ~leei 499 (502)
T TIGR00887 495 SLEEL 499 (502)
T ss_pred CHHhh
Confidence 44443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=241.96 Aligned_cols=387 Identities=14% Similarity=0.110 Sum_probs=241.3
Q ss_pred cccccccccHHHHHHcCCC---hhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 037996 6 ATYLFGTYSKDIKASLGYD---QSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIA 81 (535)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~s---~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~ 81 (535)
-.|.++.+.|.+.+|++++ +.+.+++.+.+.++..+ .+++|+++||+|||++++++.++..++.++.+++
T Consensus 104 ~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------ 177 (505)
T TIGR00898 104 WEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------ 177 (505)
T ss_pred cEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------
Confidence 3455556788999999999 89999988888888865 8999999999999999999999988886665433
Q ss_pred ChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037996 82 KPAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPA 160 (535)
Q Consensus 82 ~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 160 (535)
++++.+++.|++.|++.+...+....++.|++| ++|+++.++...++.+|..+.+ +...+..+ |++.+....+|.
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~--wr~~~~~~~i~~ 253 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLP-LVAYFIPD--WRWLQLAVSLPT 253 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhH--HHHHHHHHHHHH
Confidence 578999999999999999999999999999997 5799999998888777765544 44444332 444444444555
Q ss_pred HHHHHHHhhhcccCCCCCCcc-hhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHH
Q 037996 161 AISVIFVYTIRIIPVVQHTSH-EAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREE 239 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (535)
+...+..+++++.|+.....+ ..+... ..++
T Consensus 254 ~~~~~~~~~~~esp~~l~~~~~~~~a~~------------------------------------------------~l~~ 285 (505)
T TIGR00898 254 FLFFLLSWFVPESPRWLISQGRIEEALK------------------------------------------------ILQR 285 (505)
T ss_pred HHHHHHHHhcCCChHHHHHCCCHHHHHH------------------------------------------------HHHH
Confidence 544444444443222100000 000000 0000
Q ss_pred HhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhc
Q 037996 240 LAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGS 319 (535)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (535)
..+.+.+ ..+++. . +... +++.+++ ++..+.++++++|.++...+.....+..
T Consensus 286 ~~~~~~~-~~~~~~---~-----------~~~~----------~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (505)
T TIGR00898 286 IAKINGK-KLPAEV---L-----------SLSL----------EKDLSSS--KKQYSFLDLFRTPNLRKTTLCLMMLWFT 338 (505)
T ss_pred HHHHcCC-CCCHHH---H-----------hhhh----------hhhhhhc--cCCCcHHHHhCChHHHHHHHHHHHHHHH
Confidence 0000000 000000 0 0000 0000000 1123567888888887766554433222
Q ss_pred hhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-Cc-
Q 037996 320 SLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FP- 397 (535)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~- 397 (535)
.....+......+..+.+ ......+.++...++.++.+++.||++|| ..+..+.++.+++.+++... +.
T Consensus 339 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr------~~~~~~~~~~~~~~l~~~~~~~~~ 409 (505)
T TIGR00898 339 TAFSYYGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASLLLAGVALLLLLFVPVDL 409 (505)
T ss_pred HHHHHHHHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHcCCCc
Confidence 211111222222333433 22334456677888999999999999644 45556666666665544432 22
Q ss_pred -chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCc
Q 037996 398 -GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476 (535)
Q Consensus 398 -~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 476 (535)
+...+..++.+++.+..++....+..|.+|++.|+++.|+.++...+|+++ +|.+.+ +.+. .
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i-~p~i~~-~~~~-~-------------- 472 (505)
T TIGR00898 410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-SPFLVY-LGEK-W-------------- 472 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHH-HhHHHH-HHHH-H--------------
Confidence 333444555666777777888899999999999999999999999999977 998888 3332 1
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 477 KELICIGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 477 ~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
+..++.+.+++.+++.++.+++ +|+++
T Consensus 473 ----------~~~~~~~~~~~~~~~~~~~~~l-pet~~ 499 (505)
T TIGR00898 473 ----------LFLPLVLFGGLALLAGILTLFL-PETKG 499 (505)
T ss_pred ----------HhhHHHHHHHHHHHHHHHHHcC-cCCCC
Confidence 4557777777777766655443 45443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=226.94 Aligned_cols=332 Identities=17% Similarity=0.105 Sum_probs=221.5
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
.+++...|.+++++|+|.++.+++.+...++..+ .++.|++.||+|||+++.++.++..++.+.. .. ++.+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~------~~--~~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR------SA--PGTA 88 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH------Hh--ccHH
Confidence 4677889999999999999999987777777755 9999999999999999999988877765432 12 4577
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
.+++.|++.|+|.+...+.....+.+++|++|++++++...+.++|..+.+.+...+.+...
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~------------------ 150 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG------------------ 150 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------
Confidence 88899999999999988888888899999899999999888877777665433222111100
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
.+|+..+...... .++. . . ....+.
T Consensus 151 -------------~~w~~~f~~~~~~-------~~~~-~---------------------~------~~~~~~------- 175 (355)
T TIGR00896 151 -------------GHWQQALAWWALP-------ALLA-L---------------------L------AWIPQV------- 175 (355)
T ss_pred -------------hhHHHHHHHHHHH-------HHHH-H---------------------H------HHhhhh-------
Confidence 0011111100000 0000 0 0 000000
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDN 326 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
+++++ ++ + +.+ ....++.+|+|.+|...+..++..........+
T Consensus 176 --~~~~~-----------------~~------------~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (355)
T TIGR00896 176 --RRRVA-----------------AN------------Q-TTT----RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGW 219 (355)
T ss_pred --ccccC-----------------CC------------C-CCC----CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 0 000 011245678888887665555443333444455
Q ss_pred hHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHH
Q 037996 327 LGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVI 406 (535)
Q Consensus 327 ~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 406 (535)
.|.+.++.|.++.+++...++..++.++++++.|++.||+++| +..+..+.++..++.+.+............++
T Consensus 220 lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (355)
T TIGR00896 220 LPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQ-----RGIVAVLAVLQLVGLCGLLFAPMHGLWAWALV 294 (355)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6767777899999999999999999999999999999999543 23334455555555444433221122234667
Q ss_pred HHhhhcchhhHHHHHHHHhhc-cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 407 IGFSFGAQLPLIFAIISELFG-LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 407 ~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
.|++.+..++...+.+.+..+ ++++++..++.+....++..+ +|.+.|++.|+.+
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-gp~~~G~l~~~~g 350 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL-GPLFVGVLHDISG 350 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 899998888887776665554 567789999999888888866 9999999999843
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=225.23 Aligned_cols=324 Identities=11% Similarity=0.033 Sum_probs=217.8
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCA 90 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 90 (535)
...|.+.+++|+++++.++..+...++. +..++.|.+.||+|||+++..+.++..++.++..++ ++++.+++
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~ 113 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-------NSFSLLLI 113 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHH
Confidence 3578899999999999999655555555 459999999999999999999999999887665433 57999999
Q ss_pred HHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Q 037996 91 YICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYT 169 (535)
Q Consensus 91 ~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 169 (535)
.|+++|++.+...+....++.|++| |+|++++++..++.++|..+.+++...+.+...
T Consensus 114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g--------------------- 172 (394)
T PRK10213 114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG--------------------- 172 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------------------
Confidence 9999999999999999999999997 679999999988887877665443333222211
Q ss_pred hcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCC
Q 037996 170 IRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQP 249 (535)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (535)
++..+.....+.+ +..+ ...+ . .
T Consensus 173 ------------w~~~f~~~~~l~~---~~~l--------------------------------~~~~-~---------~ 195 (394)
T PRK10213 173 ------------WRNVFNAAAVMGV---LCIF--------------------------------WIIK-S---------L 195 (394)
T ss_pred ------------HHHHHHHHHHHHH---HHHH--------------------------------HHHH-H---------C
Confidence 2222211000000 0000 0000 0 0
Q ss_pred CCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhh-hcchH
Q 037996 250 PSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTA-IDNLG 328 (535)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 328 (535)
|+.++ + +++ .....++.+|+|.+|...+..++........ .+.+|
T Consensus 196 p~~~~--------------~-----------------~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p 241 (394)
T PRK10213 196 PSLPG--------------E-----------------PSH---QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRP 241 (394)
T ss_pred CCCCc--------------c-----------------ccc---chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 000 0112356788999888765544443333332 33356
Q ss_pred HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHH
Q 037996 329 QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVII 407 (535)
Q Consensus 329 ~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~ 407 (535)
.+.++.|+++.+.+......++++.+++++.+++.||.+ ++.......+......++.... +.+.+.+..++.
T Consensus 242 ~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 315 (394)
T PRK10213 242 VYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV------KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIW 315 (394)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 666778999988899999999999999999999999852 2222222233233333332222 445566677788
Q ss_pred HhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
|++.+...+...+.+.+..| ++.+...+.......++..+ ||.+.|+++|..+
T Consensus 316 G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~-G~~l~G~l~~~~g 368 (394)
T PRK10213 316 GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC-GAAIGGYALDNIG 368 (394)
T ss_pred HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence 98888888888888888886 56777777777777888866 9999999999743
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=229.29 Aligned_cols=364 Identities=10% Similarity=-0.087 Sum_probs=207.0
Q ss_pred ccccccHHHHHHcC---CChhhhHHHH---Hhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 037996 9 LFGTYSKDIKASLG---YDQSTLNLLG---FFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIA 81 (535)
Q Consensus 9 ~~~~~~~~l~~~~~---~s~~~~~~~~---~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~ 81 (535)
.++...|.+.++++ .+..+.++.. +...++. +.++++|+++||+|||+++.++.+++++++++++++ ....
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~ 117 (432)
T PRK10406 40 VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL--PGYE 117 (432)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc--CCch
Confidence 46677889999985 5555544422 2223333 338899999999999999999999999998776543 1110
Q ss_pred ---ChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHH
Q 037996 82 ---KPAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGW 157 (535)
Q Consensus 82 ---~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (535)
..++..+++.|+++|+|.|..++...+++.|++| ++||++.++...+...|..+.. +..
T Consensus 118 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~-~~~---------------- 180 (432)
T PRK10406 118 TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL-LVV---------------- 180 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH-HHH----------------
Confidence 0123468899999999999999999999999996 6899998887665544443322 111
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhh
Q 037996 158 LPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIR 237 (535)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (535)
..+.... . .......+|+..|.....+ + +.. ...+
T Consensus 181 -----~~~~~~~-~--~~~~~~~gWr~~F~i~~~~----~---ll~------------------------------~~~~ 215 (432)
T PRK10406 181 -----VVLQQTL-E--DAELREWGWRIPFALGAVL----A---VVA------------------------------LWLR 215 (432)
T ss_pred -----HHHHHhC-C--HHHHhccchHHHHHHHHHH----H---HHH------------------------------HHHH
Confidence 1110000 0 0000012233334311000 0 000 0001
Q ss_pred HHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhh-
Q 037996 238 EELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGG- 316 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 316 (535)
.. .|+.+.. + .++.+ +..+.++++|++++|...+...+.
T Consensus 216 ~~---------~~e~~~~-------------~--------------~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~ 255 (432)
T PRK10406 216 RQ---------LDETSQQ-------------E--------------TRALK----EAGSLKGLWRNRRAFIMVLGFTAAG 255 (432)
T ss_pred hc---------CCCCchH-------------H--------------Hhhhc----ccccHHHHHhhHHHHHHHHHHHHHH
Confidence 00 0000000 0 00000 012457788898888766554432
Q ss_pred hhchhhhhcchHHH-HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHH--HH-
Q 037996 317 LGSSLTAIDNLGQI-GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLL--LI- 392 (535)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~--~~- 392 (535)
....+.+..+.|.+ .+++|++..+++...++..+...++.++.|+++||++||+ .+....++..+... ..
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~------~~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT------SMLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHHHHHHHHH
Confidence 22233334444444 4567998888888888888888899999999999997653 22222222212111 11
Q ss_pred h-ccCcchHHH-HHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhH-HHHHhHhHhHhhhhhhhhhHhhhh
Q 037996 393 A-FPFPGSVYV-ASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLG-SYILNVKVTGSLYDHQAVKELAKK 469 (535)
Q Consensus 393 ~-~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig-~~i~~p~i~g~l~~~~~~~~~~~~ 469 (535)
. ..+.....+ ...+..++.+...+....++.|.+|++.|+++.|+.+..+++. +.. .|.+.+.+ +.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~-~p~~~~~l-~~--------- 398 (432)
T PRK10406 330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGS-AEYVALSL-KS--------- 398 (432)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH-HHHHHHHH-HH---------
Confidence 1 112222222 2222223334444566788999999999999999998776542 323 67777644 44
Q ss_pred cCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHH
Q 037996 470 GMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
.+.|...+++.++..+++.+..++
T Consensus 399 --------------~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 399 --------------IGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred --------------hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 223666666666666666555444
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=211.56 Aligned_cols=235 Identities=41% Similarity=0.787 Sum_probs=214.1
Q ss_pred CcccCcccccccccHHHHHHcCCChhhhHHHHHhhhhccccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 037996 1 MAGAGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKI 80 (535)
Q Consensus 1 ~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ 80 (535)
|++.|+.|.|+.|+|++++.+|+|++|++.++++..+|..++++.|.+.||+|+|.++.+|.+...+|+.++++++.+..
T Consensus 12 ~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 12 QLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred HHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 67899999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred CChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037996 81 AKPAVWHMCAYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPA 160 (535)
Q Consensus 81 ~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 160 (535)
++.++|+++++.++.|.|.+..+.++.....++||++||++.|+..+..|++++++..+...+++++...+++++++.|.
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~ 171 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPA 171 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 76789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHh
Q 037996 161 AISVIFVYTIRIIPVVQ---HTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIA 235 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (535)
.+.++..+++|+.|+++ ++++|++.|.....+.+..++|+++..+.++..+.++........+.+++++.|+.++
T Consensus 172 ~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~ 249 (250)
T PF06813_consen 172 VVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIP 249 (250)
T ss_pred HHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999888888887532 2345677788777888889999999999999999888888888888778888777653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=232.59 Aligned_cols=352 Identities=14% Similarity=0.085 Sum_probs=215.7
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
..+...|.+++++|+|..+.+++.+...++.. ..++.|.++||+|||++++++.++..++.++..++ ++++.
T Consensus 30 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~ 102 (405)
T TIGR00891 30 LVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA-------PGYIT 102 (405)
T ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------ccHHH
Confidence 34567789999999999999997766666665 49999999999999999999999888886665433 56899
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGND--SKSLILLIGWLPAAISV 164 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~ 164 (535)
+++.|++.|++.+..++....++.|++| ++|++++++...+.++|..+.+.+...+.+.. .|++.+....++.+..+
T Consensus 103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 68999999999888888877655544443321 12222222222222111
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+..... |+.+. ++
T Consensus 183 ~~~~~~---~~~~~----------------------------------------------------------------~~ 195 (405)
T TIGR00891 183 WLRKNI---PEAED----------------------------------------------------------------WK 195 (405)
T ss_pred HHHHhC---CCChh----------------------------------------------------------------HH
Confidence 100000 00000 00
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhh--HHHHHHHHHHHhhhhchhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLS--IDMLILFVATFGGLGSSLT 322 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~ 322 (535)
+++++.++. + +..++..+++ +..+...+......++..++ +.+................
T Consensus 196 ~~~~~~~~~---~-----------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (405)
T TIGR00891 196 EKHAGKALV---R-----------TMVDILYGGE-----HRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHP 256 (405)
T ss_pred HHhhhhhhh---h-----------hHHHHHhccc-----hhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 000000000 0 0000000000 00000000000000111111 1122222211111111112
Q ss_pred hh-cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHH-HHHHhcc-Ccch
Q 037996 323 AI-DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIG-LLLIAFP-FPGS 399 (535)
Q Consensus 323 ~~-~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~-~~~~~~~-~~~~ 399 (535)
.. +.++++.++.|+++.+++.+.+...++..+++++.|++.||+++|+ .+..+.+...+. ...+... +.+.
T Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (405)
T TIGR00891 257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK------AYVCSLLAGQLLIIPVFAIGANVAV 330 (405)
T ss_pred hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh------hhHHHHHHHHHHHHHHHHhCCchHH
Confidence 22 3344455567999999999999999999999999999999997653 223333332222 1122222 2333
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
+.+..++.+++.+...+..+.++.|.+|+++++++.|+.+....++..+ +|++.|.+.|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-g~~~~g~l~~~ 390 (405)
T TIGR00891 331 LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL-APIIGALLAQR 390 (405)
T ss_pred HHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 4444466676666667788889999999999999999999999999977 99999999998
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=224.72 Aligned_cols=347 Identities=12% Similarity=0.042 Sum_probs=220.3
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
......|.+++|+|+|.++.+++.+...++..+ .++.|+++||+|||+++.++.++..++.++.+++ ++++.
T Consensus 21 ~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-------~~~~~ 93 (382)
T PRK10091 21 GIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-------SSYLM 93 (382)
T ss_pred HHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-------CcHHH
Confidence 445677999999999999999977777777765 9999999999999999999999999887765443 56899
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
+++.|+++|++.+...+.....+.+++| ++|++++++...+..+|..+.+++.+.+.+...
T Consensus 94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g------------------ 155 (382)
T PRK10091 94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS------------------ 155 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc------------------
Confidence 9999999999999988888888899997 479999999888777777665443332222211
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
++..+.....+.+... +.... .
T Consensus 156 ---------------wr~~f~~~~~~~~~~~--------------------------------~~~~~--~--------- 177 (382)
T PRK10091 156 ---------------WRYTFLLIAVFNIAVL--------------------------------ASIYF--W--------- 177 (382)
T ss_pred ---------------HHHHHHHHHHHHHHHH--------------------------------HHHHH--h---------
Confidence 2222221000000000 00000 0
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhh-hc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTA-ID 325 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 325 (535)
.|+.+++ + +. + .....+.+|++.+|...+..++.....+.. .+
T Consensus 178 --lp~~~~~-----------------~-------------~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (382)
T PRK10091 178 --VPDIRDE-----------------A-------------KG-G---LREQFHFLRSPAPWLIFAATMFGNAGVFAWFSY 221 (382)
T ss_pred --CCCCCcc-----------------c-------------cc-C---HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 00 0 001234567777777655444332222222 22
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-cc-CcchHHHH
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-FP-FPGSVYVA 403 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~ 403 (535)
..+++.+..|+++.+.+.+.++..++..+++++.|++.||+++| ..+..+..+..++.+++. .. +.+...+.
T Consensus 222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 295 (382)
T PRK10091 222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL------RIAAVTDFIIVLALLMLFFFGGMKTASLIF 295 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555456799999999999999999999999999999999654 333444455555544332 22 33334444
Q ss_pred HHHHHhhhcchhhHHH-HHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccc
Q 037996 404 SVIIGFSFGAQLPLIF-AIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICI 482 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (535)
.++.+++.+...+... ....+..+++..+.+ ..+....+|..+ ||.+.|.+.|.
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~-Gp~~~G~l~~~---------------------- 350 (382)
T PRK10091 296 AFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAI-GAYCGGMMLTL---------------------- 350 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHH-HHHHhHHHHHc----------------------
Confidence 4455555443333333 344444444555543 345667888866 99999999997
Q ss_pred ccccchHHHHHHHHHHHHHHHHHH
Q 037996 483 GVKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
..+|+..+.+.+++++++.....
T Consensus 351 -~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 351 -GLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred -ccCcchHHHHHHHHHHHHHHHHH
Confidence 33488888888766666554433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=231.47 Aligned_cols=369 Identities=14% Similarity=0.140 Sum_probs=253.6
Q ss_pred HHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037996 18 KASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGA 96 (535)
Q Consensus 18 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~G 96 (535)
++++++|.+|.+++.+..+.|++. .++.|+++||||.|+++..+.++.++++++.-++.. .+++.+++.|++||
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----IGFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHHHhH
Confidence 567999999999988888999976 899999999999999999999999999988866532 34567789999999
Q ss_pred cChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHhhhccc
Q 037996 97 NSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN--DSKSLILLIGWLPAAISVIFVYTIRII 173 (535)
Q Consensus 97 ig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~ 173 (535)
++.|..+|+...+..+|.| +||++..++..++..+|..+..++.+.+.+. +|...+++.+.+.++..++..++....
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS 219 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997 7999999999999988888776666555544 233333333333333333322222222
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCc
Q 037996 174 PVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEV 253 (535)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (535)
|.+.....+++
T Consensus 220 P~~h~~is~~E--------------------------------------------------------------------- 230 (466)
T KOG2532|consen 220 PSKHPNISEKE--------------------------------------------------------------------- 230 (466)
T ss_pred cccCCCCCHHH---------------------------------------------------------------------
Confidence 22110000000
Q ss_pred ccCCcCccCCCCCCCCCCCCCCCCCcccccc--ccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcc-hHHH
Q 037996 254 TVEKPAEIEPKKEPLPPPDEPKGSTKSCFLT--ICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDN-LGQI 330 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 330 (535)
+ +..++ ..++.+++.+.+++++++++.+|..++..++.......+..+ +.|+
T Consensus 231 ---l----------------------~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~ 285 (466)
T KOG2532|consen 231 ---L----------------------KYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL 285 (466)
T ss_pred ---H----------------------HHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 0 00000 000111113557899999999999999988775555555544 4455
Q ss_pred HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCC----CchHHHHHHHHHHHHHHHHHhccC--cchHHHHH
Q 037996 331 GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKM----PRPLMLTLVLVLSCIGLLLIAFPF--PGSVYVAS 404 (535)
Q Consensus 331 ~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~----~r~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~ 404 (535)
.+.+|++..+.+++.++..+.+.+..+++|.++||+.+| .+ .|+..-.++....+++++.+.+.+ .....+..
T Consensus 286 ~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~ 364 (466)
T KOG2532|consen 286 KEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVIL 364 (466)
T ss_pred HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHH
Confidence 556799999999999999999999999999999999775 33 445555566666666666655442 22122222
Q ss_pred HHHHhh-hcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 405 VIIGFS-FGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 405 ~l~g~~-~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.....+ .|...+-......|. .+++.+..+|+.+....+.+++ +|.+.|.+.....
T Consensus 365 l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~-~P~~vg~~~~~~t--------------------- 421 (466)
T KOG2532|consen 365 LTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFI-APLLVGIIVTDNT--------------------- 421 (466)
T ss_pred HHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHH-HHHheeeEeCCCC---------------------
Confidence 222222 233333333333333 4689999999999999999977 9999999884212
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
...|+..|.+.+++.+++.++..++-
T Consensus 422 ~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 422 REEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEee
Confidence 22399999999999988875544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=224.91 Aligned_cols=358 Identities=13% Similarity=0.033 Sum_probs=227.8
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAY 91 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 91 (535)
+.|.+.+|+|+|.++.+++.+.+.++.. ..+++|++.||+|||+++..+.+++.++.+++. ..+... ++++.+++.
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~--~~~~~~-~~~~~l~~~ 111 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFI--VFGLGH-ANYPLILLF 111 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH--HHhccC-ccHHHHHHH
Confidence 3455668899999999997777777765 499999999999999999999999888755431 112221 357788899
Q ss_pred HHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhh
Q 037996 92 ICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTI 170 (535)
Q Consensus 92 r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 170 (535)
|+++|+|.+...+.....+.+++| ++||+++|+...+.++|..+.+++....+.+.
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~----------------------- 168 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA----------------------- 168 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------------------
Confidence 999999999887777777888885 68999999998887777544443322211110
Q ss_pred cccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCC
Q 037996 171 RIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPP 250 (535)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (535)
.++...++......... ... .....++ ++
T Consensus 169 ---------~g~~~~~~~~~~~~~~~---~~~-----------------------------~~~~~~~----------~~ 197 (402)
T TIGR00897 169 ---------FGEMNTLWSALAFVLTG---GVI-----------------------------ALFSNKD----------IF 197 (402)
T ss_pred ---------cchHHHHHHHHHHHHHH---HHH-----------------------------HHhccCC----------CC
Confidence 00111111000000000 000 0000000 00
Q ss_pred CCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHH
Q 037996 251 SEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQI 330 (535)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (535)
++.+ + + + ++ +. ++.....++.+|+|.+|...+..++..........+.|.+
T Consensus 198 ~~~~--~-----------~---~----------~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 198 TPQH--M-----------Q---T----------RE--KF-SELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred Cccc--c-----------c---C----------Cc--ch-hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 0 00 00 0001124567899999887766655544444455566777
Q ss_pred HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHH---HHHHhc--c-CcchHHHHH
Q 037996 331 GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIG---LLLIAF--P-FPGSVYVAS 404 (535)
Q Consensus 331 ~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~---~~~~~~--~-~~~~~~~~~ 404 (535)
.++.|+++.+.+.+.+...+++.+++++.|+++||+++|+ .......+...++ +..... . +.+..++..
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN-----TVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIA 323 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 7888999988888888899999999999999999997553 1111122222221 111111 1 233445566
Q ss_pred HHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccccc
Q 037996 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGV 484 (535)
Q Consensus 405 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (535)
++.|++.+...+ ....+.|. +++++|+++|+.+....+++.+ +|.+.|.+.|..+
T Consensus 324 ~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~-gp~i~g~l~~~~g---------------------- 378 (402)
T TIGR00897 324 IALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFL-APAIAVLFIGFFG---------------------- 378 (402)
T ss_pred HHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc----------------------
Confidence 777887766544 34555665 4579999999999999999976 9999999998743
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 037996 485 KCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 485 ~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
+...|++.+++.+++.++..++
T Consensus 379 --~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 379 --AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888887777766654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=228.35 Aligned_cols=382 Identities=12% Similarity=0.034 Sum_probs=238.5
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
.+....|.+.+++|.|+.+.+++.+.+.++.. ..+++|+++||+|||++++.+.+++.++.++++++ ++++.
T Consensus 28 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~ 100 (471)
T PRK10504 28 IVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-------GTLNE 100 (471)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-------CCHHH
Confidence 34556789999999999999997677777765 58999999999999999999988888876654322 46788
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-HHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAI-SVI 165 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~ 165 (535)
+++.|+++|++.+...+.....+.+++| ++|+++.|+......+|..+.+.+.+.+.+...|++.+... .|... ..+
T Consensus 101 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~-~~~~~l~~~ 179 (471)
T PRK10504 101 LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN-IPVGIIGAI 179 (471)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999997 57999999988887788877666665555543333333332 23222 222
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
..... .|+.+. ...+..+...... ......+....... +.. +..........+.....+.....++.
T Consensus 180 ~~~~~--~~~~~~-~~~r~~~~~~~~~--~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 246 (471)
T PRK10504 180 ATLML--MPNYTM-QTRRFDLSGFLLL--AVGMATLTLALDGS--KGL-GLSPLAIAGLVAVGVVALLLYLLHAR----- 246 (471)
T ss_pred HHHHh--CCCccc-cCCCCChHHHHHH--HHHHHHHHHHHhcC--CcC-CcchHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 11111 111111 0011111111111 11111111111110 000 00000001111111111111111100
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
+.++ +....+.+|||+++......++..........
T Consensus 247 ---------------------------------------~~~~-----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 282 (471)
T PRK10504 247 ---------------------------------------NNNR-----ALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPF 282 (471)
T ss_pred ---------------------------------------cCCC-----CccCHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 0000 01113578899988877666655444333445
Q ss_pred chHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc--Ccc--hH
Q 037996 326 NLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP--FPG--SV 400 (535)
Q Consensus 326 ~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--~~~--~~ 400 (535)
..+++.+ ..|.++.++++......++..++.+++|++.||+++| ..+..+.++..+..+++... ..+ ..
T Consensus 283 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (471)
T PRK10504 283 MTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR------RVLVATTLGLALVSLLFMLVALLGWYYLL 356 (471)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 5677766 4799988999998888888999999999999999644 34444555454443333322 122 23
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
.+..++.|++.+...+.....+.+.+|++.++.++++.++...+|..+ |+.+.|.+.+..+
T Consensus 357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i-g~~i~g~ll~~~g 417 (471)
T PRK10504 357 PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI-GVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 344556678888778888889999999999999999999999999977 9999999988754
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=225.38 Aligned_cols=345 Identities=14% Similarity=0.068 Sum_probs=217.0
Q ss_pred HHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHH-hcCCCChhHHHHHHHH
Q 037996 15 KDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAV-TGKIAKPAVWHMCAYI 92 (535)
Q Consensus 15 ~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~r 92 (535)
..+++++|.|+.+.+++.+...++.. .+++.|+++||+|||+++.++.+++.++.+.++++. .......+++.+++.|
T Consensus 40 ~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 119 (399)
T PRK05122 40 GYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGR 119 (399)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH
Confidence 34788999999999997777777775 499999999999999999999988877765543321 1111112467788999
Q ss_pred HHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhc
Q 037996 93 CIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIR 171 (535)
Q Consensus 93 ~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 171 (535)
+++|+|.+...+.....+.+++| |+|++++++...+..+|..+.+++...+.+...++.
T Consensus 120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~-------------------- 179 (399)
T PRK05122 120 LLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAG-------------------- 179 (399)
T ss_pred HHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHH--------------------
Confidence 99999999998888888889996 689999999877765665444333222222111111
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCC
Q 037996 172 IIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPS 251 (535)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (535)
.+. +..... ... ....++ .|+
T Consensus 180 -------------~~~----~~~~~~---~~~-----------------------------~~~~~~----------~~~ 200 (399)
T PRK05122 180 -------------LGL----LIMLLA---LLG-----------------------------LLLARP----------RPA 200 (399)
T ss_pred -------------HHH----HHHHHH---HHH-----------------------------HHHHhc----------CCC
Confidence 110 000000 000 000000 000
Q ss_pred CcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHH
Q 037996 252 EVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIG 331 (535)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (535)
+. ++ +++ ..+.++.+++ +|.......+..........+.+.+.
T Consensus 201 ~~-----------------~~--------------~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (399)
T PRK05122 201 VP-----------------PV--------------KGE----RLPFRRVLGR--VWPYGMGLALASIGFGTIATFITLYY 243 (399)
T ss_pred CC-----------------CC--------------Ccc----chhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 000 0012222221 22211111111111111222334444
Q ss_pred hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhh
Q 037996 332 ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFS 410 (535)
Q Consensus 332 ~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~ 410 (535)
++.|. .+.+...+.+.++..+++++.|++.||+++| ..+..+..+..++..++... +.+..++..++.|++
T Consensus 244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGL------RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55565 3456667788888999999999999999643 33444555555555444433 444555667788998
Q ss_pred hcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHH
Q 037996 411 FGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLP 490 (535)
Q Consensus 411 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (535)
.+..++.....+.|.+|++++|+++|+.+....++..+ +|.+.|.+.|..+ |+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g------------------------~~~~ 370 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI-TGPLAGLVASWFG------------------------YPSI 370 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC------------------------HHHH
Confidence 88878777778889999999999999999999999866 8889999988743 8889
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037996 491 FIILACVTCFGALVSFIL 508 (535)
Q Consensus 491 f~~~~~~~~~~~~l~~~l 508 (535)
|.+.+++.+++.++.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 371 FLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 988888777766555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=225.83 Aligned_cols=338 Identities=13% Similarity=0.042 Sum_probs=225.0
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
...+.|.+.+++|.|..+++++.+.+.++..+ +++.|++.||+|||+++.++.++..++.+..+++ ++++.+
T Consensus 25 ~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~~~l 97 (381)
T PRK03633 25 LNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-------VGFWSW 97 (381)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHH
Confidence 34567889999999999999987777777765 9999999999999999999999988886665433 568999
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
++.|+++|++.+...+.....+.++.| ++|++++++...+..+|..+.+.+...+.+...+.
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~----------------- 160 (381)
T PRK03633 98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV----------------- 160 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch-----------------
Confidence 999999999999988877777777775 68999999988888788766543322221110000
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
..+. .... . .+ . .++ ...+.
T Consensus 161 ----------------~~~~-~~~~-~-~~---~----------------------------~~~-~~~~~--------- 180 (381)
T PRK03633 161 ----------------LPWV-TGLV-L-AA---I----------------------------LPL-LFTRI--------- 180 (381)
T ss_pred ----------------HHHH-HHHH-H-HH---H----------------------------HHH-HHhcc---------
Confidence 0000 0000 0 00 0 000 00000
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
++++ + + +++ ..+.++.+|+|.++......+...........+.
T Consensus 181 -~~~~--------------------~-----------~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 223 (381)
T PRK03633 181 -LNQQ--------------------A-----------E-NHD----STSIWPMLKLRQARLGVNGCIISGIVLGSLYGLM 223 (381)
T ss_pred -cCCC--------------------C-----------C-CCC----CCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 000 1124567788887765433322221112223345
Q ss_pred HHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 037996 328 GQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVII 407 (535)
Q Consensus 328 ~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 407 (535)
|.+.++.|.++.+.+...+...++..++++..|++.||+++| ..+..+..+..++...+. . ....+....+.
T Consensus 224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~------~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~l~ 295 (381)
T PRK03633 224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL------LVLRVQVFVVILGSIAML-S-QAAMAPALFIL 295 (381)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH------HHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHH
Confidence 666677899888889889999999999999999999999644 344444444444433332 2 22333455566
Q ss_pred HhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccc
Q 037996 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCY 487 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (535)
|++.+...+.....+.|..|+++++...+..+...++|..+ +|.+.|++.|+.+ +
T Consensus 296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~i-gp~~~G~l~~~~g------------------------~ 350 (381)
T PRK03633 296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLL-GPSFTAMLMQNYS------------------------D 350 (381)
T ss_pred HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC------------------------c
Confidence 76666667777788889888888888888888888899977 9999999999843 7
Q ss_pred hHHHHHHHHHHHHH
Q 037996 488 RLPFIILACVTCFG 501 (535)
Q Consensus 488 ~~~f~~~~~~~~~~ 501 (535)
+..|.+.+.+.++.
T Consensus 351 ~~~f~~~~~~~l~~ 364 (381)
T PRK03633 351 NLLFIMIASVSFIY 364 (381)
T ss_pred cHHHHHHHHHHHHH
Confidence 77887766665543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=242.89 Aligned_cols=400 Identities=13% Similarity=0.031 Sum_probs=237.9
Q ss_pred ccccHHHHHHcCCC--------hhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 037996 11 GTYSKDIKASLGYD--------QSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIA 81 (535)
Q Consensus 11 ~~~~~~l~~~~~~s--------~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~ 81 (535)
+...|.+..+++.+ ..+.+++.+.+.++.. ..+++|+++||+|||++++++.+++.++.++..+. ...
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~~- 124 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--AFA- 124 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--ccc-
Confidence 34456666676666 8899997777777775 49999999999999999999999988886665322 222
Q ss_pred ChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHH-H-HHh-cCChhHHHHHHHH
Q 037996 82 KPAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVY-L-AVY-GNDSKSLILLIGW 157 (535)
Q Consensus 82 ~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~-~-~~~-~~~~~~~~~~~~~ 157 (535)
.+++.+++.|+++|+|.+..++....++.|++| ++|++++++...+..+|..+.+.+. . ... ....|++.+.+..
T Consensus 125 -~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~ 203 (481)
T TIGR00879 125 -LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQL 203 (481)
T ss_pred -cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 346788999999999999999999999999996 6899999999888888887665544 1 222 2233333333333
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhh
Q 037996 158 LPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIR 237 (535)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (535)
++.+..++..+++++.|......++.+...
T Consensus 204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------------------------------------- 233 (481)
T TIGR00879 204 IPAGLLFLGLFFLPESPRWLVGKGRVEEAR-------------------------------------------------- 233 (481)
T ss_pred HHHHHHHHHHhcCCCChHHHHHcCChHHHH--------------------------------------------------
Confidence 333333333333332211000000000000
Q ss_pred HHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhh---hhHHHHHHHHHHH
Q 037996 238 EELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQAL---LSIDMLILFVATF 314 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~ 314 (535)
+..++... ..++. .+..+..+..+...+.+.+.........++.. +.+.++...+..+
T Consensus 234 ~~~~~~~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (481)
T TIGR00879 234 KSLARLRG---TSGED----------------KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWF 294 (481)
T ss_pred HHHHHHhC---CCCCc----------------HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHH
Confidence 00000000 00000 00000000000000000000000011112221 2333344433333
Q ss_pred hhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-
Q 037996 315 GGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA- 393 (535)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~- 393 (535)
..........++.+++.++.|++..+++....+..++.+++++++|+++||+++| ..+..+.++.+++.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~------~~~~~~~~~~~~~~~~~~~ 368 (481)
T TIGR00879 295 QQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR------PLLLIGAAGMAICLFVLGI 368 (481)
T ss_pred HHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHH
Confidence 3333333345567777788899888888888899999999999999999999654 334444555555544433
Q ss_pred --cc--C------cchHHHHHHHHHhhhcc-hhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 394 --FP--F------PGSVYVASVIIGFSFGA-QLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 394 --~~--~------~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
.. + .........+.+.+.+. ..+....++.|.+|++.++++.|+.+....+++++ +|.+.+.+.++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i-~~~~~~~~~~~~~ 447 (481)
T TIGR00879 369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI-VGFLFPTMLESIG 447 (481)
T ss_pred HhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence 11 1 12222233333333332 23555677799999999999999999999999977 8999999888733
Q ss_pred hhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 463 VKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
|+..|++.++++++++++..++.+++|+
T Consensus 448 ------------------------~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 448 ------------------------VGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred ------------------------ccceehhHHHHHHHHHHHHheecccCCC
Confidence 7888888888888887777666555443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=225.64 Aligned_cols=366 Identities=12% Similarity=0.066 Sum_probs=211.2
Q ss_pred cccccH-HHHHHc--CCChhhhHHHHH-----hhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 037996 10 FGTYSK-DIKASL--GYDQSTLNLLGF-----FKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKI 80 (535)
Q Consensus 10 ~~~~~~-~l~~~~--~~s~~~~~~~~~-----~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ 80 (535)
++.+.| .+.+++ +.++. .+++.+ ...++..+ +++.|+++||+|||+++.++.+++++++++++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----- 114 (438)
T PRK09952 41 YGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL----- 114 (438)
T ss_pred HHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC-----
Confidence 344555 355666 67766 455422 22233333 7889999999999999999999999987766443
Q ss_pred CChhHH--------HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHH
Q 037996 81 AKPAVW--------HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSL 151 (535)
Q Consensus 81 ~~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~ 151 (535)
+++. .++++|+++|++.|..++....++.|++| |+||+.++....+..+|..+...+...+..
T Consensus 115 --~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~------ 186 (438)
T PRK09952 115 --PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISM------ 186 (438)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3444 57789999999999999999999999997 679999998888777776554432221110
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhh
Q 037996 152 ILLIGWLPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVP 231 (535)
Q Consensus 152 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (535)
. +. ++.....+|+..|.....+ . ++.
T Consensus 187 ----------------~-~~--~~~~~~~gWr~~f~~~~~~----~---l~~---------------------------- 212 (438)
T PRK09952 187 ----------------M-TT--DEQFLSWGWRIPFLFSIVL----V---LIA---------------------------- 212 (438)
T ss_pred ----------------h-CC--HHHhhccChHHHHHHHHHH----H---HHH----------------------------
Confidence 0 00 0000001223233210000 0 000
Q ss_pred hhHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHH
Q 037996 232 LAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFV 311 (535)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (535)
...+.. .|+.++..+ ..+ +. ++.++ +.......+++++.|...+
T Consensus 213 --~~l~~~---------~~es~~~~~------------~~~-----------~~-~~~~~-~~~~~~~l~~~~~~~~~~~ 256 (438)
T PRK09952 213 --LWVRNG---------MEESAEFEQ------------QQH-----------EQ-AAAKK-RIPVIEALLRHPGAFLKII 256 (438)
T ss_pred --HHHHHh---------CCCChhHHH------------HHh-----------hc-ccccc-cCCHHHHHHHchHHHHHHH
Confidence 000100 000000000 000 00 00000 0001123556777766543
Q ss_pred H-HHhhhhchhhhhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHH
Q 037996 312 A-TFGGLGSSLTAIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGL 389 (535)
Q Consensus 312 ~-~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~ 389 (535)
. .++.....+....+.+ ++.+..|+++........+.++...++.++.|+++||++||+ .+..+.++..++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~------~~~~~~~~~~~~~ 330 (438)
T PRK09952 257 ALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR------VYITGALIGTLSA 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH------HHHHHHHHHHHHH
Confidence 2 2222222222333344 444567887765555555667778889999999999997652 2333333333322
Q ss_pred HHH--h--ccCc-chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhh-hhHHHHHhHhHhHhhhhhhhh
Q 037996 390 LLI--A--FPFP-GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLAS-PLGSYILNVKVTGSLYDHQAV 463 (535)
Q Consensus 390 ~~~--~--~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~ig~~i~~p~i~g~l~~~~~~ 463 (535)
+.+ . ..+. ..+.+..++.+++.+...+..++++.|.+|++.|+++.|+.+... .+++.+ +|.+.+++.|..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~-~p~i~g~l~~~~~- 408 (438)
T PRK09952 331 FPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGF-TPFIAAALVTYFG- 408 (438)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcC-
Confidence 211 1 1122 223334555577777777888899999999999999999976654 477756 9999999988521
Q ss_pred hHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 464 KELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
++|...+.+.+++.+++.+..+.+
T Consensus 409 ---------------------~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 409 ---------------------GSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred ---------------------CCchHHHHHHHHHHHHHHHHHHHc
Confidence 237788887777777776665443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=231.32 Aligned_cols=364 Identities=10% Similarity=0.000 Sum_probs=232.1
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
....|.+.++++.+..+.+++.+...++... .++.|+++||+|||+++.++.++..++.+..++. .....++++.++
T Consensus 37 ~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 114 (417)
T PRK10489 37 GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN--AFLPEPSLLAIY 114 (417)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH--HHcCCCcHHHHH
Confidence 3456788888988999999987777787765 8999999999999999999888877775544321 111224678888
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
+.|+++|++.+...++....+.+++| ++|+++.++.....++|..+.+.+.+.+.+..
T Consensus 115 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~--------------------- 173 (417)
T PRK10489 115 LLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG--------------------- 173 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH---------------------
Confidence 99999999998888888888999997 57999999987777777765443332222110
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCC
Q 037996 169 TIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQ 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
++++.+.... ...++. .+ +....++ .
T Consensus 174 ------------~~~~~~~~~~------~~~~~~-~~--------------------------~~~~l~~---------~ 199 (417)
T PRK10489 174 ------------GVAWNYGLAA------AGTFIT-LL--------------------------PLLRLPA---------L 199 (417)
T ss_pred ------------hhHHHHHHHH------HHHHHH-HH--------------------------HHHhCCC---------C
Confidence 0111111000 000000 00 0000000 0
Q ss_pred CCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchH
Q 037996 249 PPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLG 328 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (535)
++++ + + + +++.+......+..+++|.++...+..++.... ..+..+.|
T Consensus 200 ~~~~----~-----------~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p 247 (417)
T PRK10489 200 PPPP----Q-----------P---------------R-EHPLRSLLAGFRFLLASPVVGGIALLGGLLTMA-SAVRVLYP 247 (417)
T ss_pred CCCC----c-----------c---------------c-ccchHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HhHHHhhH
Confidence 0000 0 0 0 000000001234566777766554433322221 12233445
Q ss_pred HHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHH
Q 037996 329 QIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVI 406 (535)
Q Consensus 329 ~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l 406 (535)
.+.++ .|.++.+.+++.+...++..++.++.+++.||.++ +..+..+.++..++.+++... +.....+..++
T Consensus 248 ~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 248 ALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARP------GLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCc------chHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 55565 79999999999999999999999999999987532 223334444555555444433 33445566677
Q ss_pred HHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccccccc
Q 037996 407 IGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKC 486 (535)
Q Consensus 407 ~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (535)
.|++.+...+...+++.|..|++.||+++|+.+....+|..+ +|.+.|.+.|..+
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~l~G~l~~~~g------------------------ 376 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI-GAALLGGLGAMMT------------------------ 376 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH-HHHHHHHHHHHhc------------------------
Confidence 788777766777788999999999999999999999999977 9999999998744
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 487 YRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 487 ~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
++..+...+++.++..++.....++.|+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 377 PVASASASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5667766666655555555454455554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=223.89 Aligned_cols=338 Identities=13% Similarity=0.063 Sum_probs=227.5
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCA 90 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 90 (535)
...|.+.++++.+..+++++.+...++..+ .++.|+++||+|||++++.+.++..++.++..+. ......+++.+++
T Consensus 20 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 97 (365)
T TIGR00900 20 VALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV--ALLGGLNIWQVYV 97 (365)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH--HHcCCCcHHHHHH
Confidence 445778888999999999987777777754 9999999999999999999998887776655443 1111126899999
Q ss_pred HHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Q 037996 91 YICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYT 169 (535)
Q Consensus 91 ~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 169 (535)
.|+++|++.+...+....++.|++| ++|++++|+...+..+|..+.+.+...+.+...
T Consensus 98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--------------------- 156 (365)
T TIGR00900 98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG--------------------- 156 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh---------------------
Confidence 9999999999999999999999997 589999999998888887665433322221111
Q ss_pred hcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCC
Q 037996 170 IRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQP 249 (535)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (535)
++..+...... .++... +....+ .
T Consensus 157 ------------~~~~~~~~~~~-------~~~~~~--------------------------~~~~~~-----------~ 180 (365)
T TIGR00900 157 ------------IKWAIWVDAVG-------FAISAL--------------------------LIVSVR-----------I 180 (365)
T ss_pred ------------HHHHHHHHHHH-------HHHHHH--------------------------HHHhcc-----------c
Confidence 11111100000 000000 000000 0
Q ss_pred CCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh-cchH
Q 037996 250 PSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI-DNLG 328 (535)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 328 (535)
+++++++ +++. ++ +. .++.....++.+|+|.++......+.......... ...|
T Consensus 181 ~~~~~~~------------~~~~---~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 181 PELAASE------------IQAL---SN------AV----LRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFP 235 (365)
T ss_pred ccCCCcc------------cccc---ch------hH----HHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0000000 0000 00 00 00001134567788888877665554433333333 4556
Q ss_pred HHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccC--cchHHHHHH
Q 037996 329 QIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPF--PGSVYVASV 405 (535)
Q Consensus 329 ~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~ 405 (535)
++.++ .|.++.+.+...+...++..+++++.+++.||.++| ..+..+.++.+++...+.... .+...+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM------ALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh------HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 66665 689888999999999999999999999999998543 344444445555544444332 445566778
Q ss_pred HHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 406 IIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 406 l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
+.|++.+...+...+++.|.+|+++++++.|+.+....++..+ +|.+.|.+.|.
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~g~l~~~ 363 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPL-GLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8899888888888899999999999999999999999999977 99999999886
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=218.36 Aligned_cols=343 Identities=12% Similarity=-0.010 Sum_probs=213.5
Q ss_pred HHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHH
Q 037996 16 DIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLA-VTGKIAKPAVWHMCAYIC 93 (535)
Q Consensus 16 ~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~~r~ 93 (535)
.+++|+|+|..+++++.+.+.++.. .++++|+++||+|||+++.++.+.+.++.+...+. .......++++.+++.|+
T Consensus 41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (392)
T PRK12382 41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL 120 (392)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 4688999999999997777777765 59999999999999999999988777664332111 111111246888999999
Q ss_pred HhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcc
Q 037996 94 IGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRI 172 (535)
Q Consensus 94 l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 172 (535)
++|+|.+...+.....+.+++| |+|++++++...+...|..+.+++...+.+...
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g------------------------ 176 (392)
T PRK12382 121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG------------------------ 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC------------------------
Confidence 9999999988888888899996 689999999877766665554332222211111
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCC
Q 037996 173 IPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSE 252 (535)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (535)
++..+. + ..+..+.. + ...++ .+++
T Consensus 177 ---------~~~~~~----~---~~~~~~~~----------------------------~-~~~~~----------~~~~ 201 (392)
T PRK12382 177 ---------FAALAL----T---TMVLPLLA----------------------------W-AFNGT----------VRKV 201 (392)
T ss_pred ---------hHHHHH----H---HHHHHHHH----------------------------H-HHHHh----------ccCC
Confidence 100000 0 00000000 0 00000 0000
Q ss_pred cccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHh
Q 037996 253 VTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGE 332 (535)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (535)
++ ++ + +++ +.++.++ .+|...+...+..........+.+.+.+
T Consensus 202 ~~-----------------~~-----------~-~~~------~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 244 (392)
T PRK12382 202 PA-----------------HA-----------G-ERP------SLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFA 244 (392)
T ss_pred CC-----------------Cc-----------c-cCc------hHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 00 0 000 1112211 1111111111111111112233344456
Q ss_pred hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhh
Q 037996 333 SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSF 411 (535)
Q Consensus 333 ~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~ 411 (535)
+.|++ +.+.......++..+++++.|++.||+++|+. +..+..+..++.+++... +.+..++..++.|++.
T Consensus 245 ~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 316 (392)
T PRK12382 245 SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV------AIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGC 316 (392)
T ss_pred hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 66654 34556667788889999999999999976532 233444444544444333 4445556677888888
Q ss_pred cchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHH
Q 037996 412 GAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPF 491 (535)
Q Consensus 412 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 491 (535)
+...+.....+.|.+|++++|++.|+.+....++..+ +|.+.|.+.|+.+ |+..|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-g~~~~g~l~~~~g------------------------~~~~~ 371 (392)
T PRK12382 317 SLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV-SGPLAGMLATSFG------------------------YPSVF 371 (392)
T ss_pred HhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC------------------------chHHH
Confidence 8777888888899999999999999999999999977 9999999998754 89999
Q ss_pred HHHHHHHHHHHHHHHH
Q 037996 492 IILACVTCFGALVSFI 507 (535)
Q Consensus 492 ~~~~~~~~~~~~l~~~ 507 (535)
.+.+++.+++.++.+.
T Consensus 372 ~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 372 LAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9888877777665543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=225.41 Aligned_cols=373 Identities=12% Similarity=0.068 Sum_probs=222.7
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
+...|.+.+++|+|..+.+++.+...++... .++.|+++||+|||++++++.++..++.++.++. ++++.++
T Consensus 40 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~ 112 (496)
T PRK03893 40 TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA-------PGYWTLF 112 (496)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-------hHHHHHH
Confidence 3456889999999999999976666666654 8999999999999999999999988887766443 5788999
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
+.|++.|++.+..++....++.|++| ++|++++++...+..+|..+.+.+...+.+...|++.+.+..++.+..++...
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 192 (496)
T PRK03893 113 IARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRK 192 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 57999999999888888877776666666654455554554454443332221
Q ss_pred hhcccCCCCCC--cc-h-hhHHHH--------HHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhh
Q 037996 169 TIRIIPVVQHT--SH-E-AKVFYH--------FLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAI 236 (535)
Q Consensus 169 ~~~~~~~~~~~--~~-~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (535)
..++.++.+.+ .. + ++.... .... .............. ...++ .+......+......... .
T Consensus 193 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~-~ 266 (496)
T PRK03893 193 NLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINIL-LTLAAAAALWFCFA-GNLQN---AAIVAVLGLLCAAIFISF-M 266 (496)
T ss_pred hCCCchhhhhhccccccchhHHHHHhcchhHHHHHH-HHHHHHHHHHHHHH-hhhcc---hhHHHHHHHHHHHHHHHH-H
Confidence 12211110000 00 0 000000 0000 00000000000000 00000 000000000000000000 0
Q ss_pred hHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhh
Q 037996 237 REELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGG 316 (535)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (535)
.+ ...+ +.+.........+..
T Consensus 267 ~~------------------------------------------------~~~~-----------~~~~~~~~~~~~~~~ 287 (496)
T PRK03893 267 VQ------------------------------------------------SSGK-----------RWPTGVMLMVVVLFA 287 (496)
T ss_pred HH------------------------------------------------hccc-----------chhHHHHHHHHHHHH
Confidence 00 0000 011122222222222
Q ss_pred hhchhhhhcchHHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-c
Q 037996 317 LGSSLTAIDNLGQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-F 394 (535)
Q Consensus 317 ~~~~~~~~~~~~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~ 394 (535)
....+....+.|.+. ++.|+++.+++.+.+...++..+++++.|+++||+++| ..+..+.++..+..+.+. .
T Consensus 288 ~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~------~~~~~~~~~~~~~~~~~~~~ 361 (496)
T PRK03893 288 FLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR------KAYVCSLLISQLLIIPVFAI 361 (496)
T ss_pred HhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHhhc
Confidence 222223334455555 47899999999999999999999999999999999654 233334443333333222 2
Q ss_pred cCc--chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 395 PFP--GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 395 ~~~--~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
.+. +...+..++.++......+..+.++.|.+|++++|+++|+.+....+|+.+ +|.+.|.+.|+.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l-gp~l~g~l~~~~g 430 (496)
T PRK03893 362 GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGAL-APILGALIAQRLD 430 (496)
T ss_pred cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHH-HHHHHHHHhccCC
Confidence 222 222223333333333345667788999999999999999999999999977 9999999998744
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=220.99 Aligned_cols=339 Identities=12% Similarity=0.039 Sum_probs=198.3
Q ss_pred ccccccHHHHHHcCCChhhhHH-HHHhhhhc--c----ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 037996 9 LFGTYSKDIKASLGYDQSTLNL-LGFFKDLG--A----NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIA 81 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~-~~~~~~~~--~----~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~ 81 (535)
.++...|.+.+|++.++.+.++ ..+....+ . +.+++.|+++||+|||++++.+.+++.++.++++++
T Consensus 33 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~------ 106 (434)
T PRK15075 33 LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV------ 106 (434)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC------
Confidence 3567889999999998888765 33222221 1 236889999999999999999999999887765432
Q ss_pred ChhHH--------HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHH
Q 037996 82 KPAVW--------HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLI 152 (535)
Q Consensus 82 ~~~~~--------~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~ 152 (535)
++++ .+++.|+++|++.+..++....++.|++| ++||+++++...+..+|..+.+.+ +
T Consensus 107 -~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~-g----------- 173 (434)
T PRK15075 107 -PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL-G----------- 173 (434)
T ss_pred -CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH-H-----------
Confidence 3344 46789999999999998888899999997 689999999887766665443211 1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhh
Q 037996 153 LLIGWLPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPL 232 (535)
Q Consensus 153 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (535)
..+...+.+ +.....+|+..|.. . +.....
T Consensus 174 ----------~~l~~~~~~---~~~~~~gWr~~f~~----~---~~~~~~------------------------------ 203 (434)
T PRK15075 174 ----------YLLNQWLSP---AQMAEWGWRIPFLI----G---CLIVPF------------------------------ 203 (434)
T ss_pred ----------HHHHHhCCH---HHHhccchHHHHHH----H---HHHHHH------------------------------
Confidence 111100000 00000123333321 0 000000
Q ss_pred hHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHH
Q 037996 233 AIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVA 312 (535)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (535)
....+.. .|+.++.. +++++++ .....++..++++.+.....
T Consensus 204 ~~~~~~~---------~~e~~~~~---------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 245 (434)
T PRK15075 204 IFLIRRS---------LEETEEFL---------------------------ARKHRPS--MREIFRSLAANWRIVLAGML 245 (434)
T ss_pred HHHHHHh---------cCCCHHHH---------------------------Hhhhccc--cccHHHHHHHhHHHHHHHHH
Confidence 0000100 00000000 0000000 01112333455555544322
Q ss_pred -HHhhhhchhhhhcchHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHH-HH
Q 037996 313 -TFGGLGSSLTAIDNLGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCI-GL 389 (535)
Q Consensus 313 -~~~~~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i-~~ 389 (535)
.++..........+.|.+.++ +|+++.++++...+..+++.++++++|+++||+++|+ .+..+..+..+ ..
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~------~~~~~~~~~~~~~~ 319 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP------VLIAFTVLAILTAY 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HHHHHHHHHHHHHH
Confidence 222222233344455666554 7998888888888889999999999999999997552 22222222211 11
Q ss_pred HH--HhccCc--chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhh-hHHHHHhHhHhHhhhhhh
Q 037996 390 LL--IAFPFP--GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASP-LGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 390 ~~--~~~~~~--~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-ig~~i~~p~i~g~l~~~~ 461 (535)
.. ....+. ........+.+++.+...+....++.|.+|++.|+++.|+.+.... +++.+ +|.+.|++.|..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~-~p~~~g~i~~~~ 395 (434)
T PRK15075 320 PALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGF-TPAISTWLIHVT 395 (434)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhh-HHHHHHHHHHhc
Confidence 11 111222 2233334455666666666666788999999999999999755444 44655 899999999874
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=223.36 Aligned_cols=355 Identities=15% Similarity=0.114 Sum_probs=226.0
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
.++.+.|.+.+++|++..+.+++.+...++..+ .++.|++.||+|||+++.++.++..++.++..+. ++++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 107 (398)
T TIGR00895 35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-------TNVTQ 107 (398)
T ss_pred HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-------cchHH
Confidence 455678999999999999999977777777654 8999999999999999999998888876655332 46788
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSK-SLILLIGWLPAAISVI 165 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~ 165 (535)
+++.|++.|++.+..++....++.|++| ++|++++++...+..+|..+.+.+...+.+...+ ..+.+.+..+.+..++
T Consensus 108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 8999999999999999999999999998 5799999999888888887766555554443222 2222222233333332
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
....+++.++...+.++++.. ++.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~-- 214 (398)
T TIGR00895 188 LMRFLPESIDFLVSKRPETVR---------------------------------------------------RIVNAI-- 214 (398)
T ss_pred HHHhCCCCChHHHhcCHHHHH---------------------------------------------------HHHHHH--
Confidence 222222211100000000000 000000
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHH-hh---hhHHHHHHHHHHHhhhhchh
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQ-AL---LSIDMLILFVATFGGLGSSL 321 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l---~~~~~~~~~~~~~~~~~~~~ 321 (535)
.++... ++++ +.++ + +.+++ ......+ .+ +.+..+..+...++......
T Consensus 215 ---~~~~~~-------~~~~---~~~~----~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (398)
T TIGR00895 215 ---APQMQA-------EAQS---ALPE----Q-------KATQG---TKRSVFKALFQGKTARITVLLWLLYFMLLVGVY 267 (398)
T ss_pred ---HHhccc-------cccc---cccc----c-------ccccc---hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 0000 0 00000 0011111 11 22334444443333333333
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-ccCcchH
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-FPFPGSV 400 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~ 400 (535)
....+.+++.++.|.++.+++...++..++..+++++.|+++||+++| .......+......++.. ..+....
T Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (398)
T TIGR00895 268 FLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR------VTALLLLLGAVFAVLVGSTLFSPTLL 341 (398)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH------HHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 344456677778899998999999999999999999999999999643 222222222222222222 2344556
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
++..++.|++.+...+...+++.|.+|+++++++.|+.+....++..+ +|.+.|++
T Consensus 342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~~G~l 397 (398)
T TIGR00895 342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAII-GPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHhHHhc
Confidence 677788899999888999999999999999999999999999999976 99998875
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=216.50 Aligned_cols=328 Identities=13% Similarity=0.083 Sum_probs=211.5
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
.++...+++++++|+|..+++++.+...+.. ...++.|+++||+|||+++.++.++..++.+...+. ++++.
T Consensus 29 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-------~~~~~ 101 (400)
T PRK11646 29 VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-------HEPWL 101 (400)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-------ccHHH
Confidence 4555666788999999999999666555555 458999999999999999999999988886665332 46888
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
+++.|+++|++.+...+.....+.+++| ++|++++|+......+|..+.+.+.+.+. ..
T Consensus 102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~------------------- 161 (400)
T PRK11646 102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY------------------- 161 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-------------------
Confidence 9999999999999888888888999996 68999999998888788766543333222 10
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
+++..+.......+..+ +. ... ..
T Consensus 162 --------------g~~~~f~~~~~~~~~~~---i~-----------------------------~~~-~~--------- 185 (400)
T PRK11646 162 --------------DFRLVCATGAVLFVLAA---AF-----------------------------NAW-LL--------- 185 (400)
T ss_pred --------------hHHHHHHHHHHHHHHHH---HH-----------------------------HHH-hC---------
Confidence 01111110000000000 00 000 00
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDN 326 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
|++. + + + . +++ .....++.+++|+++...+..+...........+
T Consensus 186 ---~~~~-~-~-------------~-------------~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (400)
T PRK11646 186 ---PAYK-L-S-------------T-------------V-RTP---VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLM 230 (400)
T ss_pred ---Cccc-c-c-------------c-------------c-chh---hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0 0 0 0 000 0113467778888876554433322222223345
Q ss_pred hHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchh-hhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHH
Q 037996 327 LGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEG-LLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVAS 404 (535)
Q Consensus 327 ~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 404 (535)
.|.+.++.+.++.+.+.+.++..+....+....++..|| ++. + ..+..+.++..++.+++... +.+...+..
T Consensus 231 ~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~-----~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 304 (400)
T PRK11646 231 LPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRL-----E-HRLMAGLLIMSLSMFPIGMVSNLQQLFTLI 304 (400)
T ss_pred hhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----h-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666667665567778887777776665555555555554 321 1 12334445555555444433 334444555
Q ss_pred HHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 405 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
++.+++.+...+...+++.+..|++++|+++|+.+....+|..+ ||.+.|.+.|+.
T Consensus 305 ~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-g~~l~G~l~~~~ 360 (400)
T PRK11646 305 CLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI-GYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh-cccchHHHHHHH
Confidence 66777777777788889999999999999999999999999977 999999999884
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=214.87 Aligned_cols=326 Identities=15% Similarity=0.060 Sum_probs=211.7
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
+....|.+.+++|.|+++.+++.+...++... .++.|++.||+|||+++.++.++..++.++.... ++++.+
T Consensus 24 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 96 (385)
T TIGR00710 24 YLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------NNIETL 96 (385)
T ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHHH
Confidence 34556889999999999999987777777755 9999999999999999999999988887665443 568889
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
++.|++.|++.+...+....++.|++| ++|++++|+......+|..+.+.+.+.+.+...
T Consensus 97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~------------------- 157 (385)
T TIGR00710 97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS------------------- 157 (385)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------------
Confidence 999999999999999999999999997 579999999988887877665433332222111
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
++..+.......+... . .. ....
T Consensus 158 --------------~~~~~~~~~~~~~~~~---~-----------------------------~~-~~~~---------- 180 (385)
T TIGR00710 158 --------------WHAIFAFLSLAGILLS---A-----------------------------LI-FFIL---------- 180 (385)
T ss_pred --------------HHHHHHHHHHHHHHHH---H-----------------------------HH-HHhC----------
Confidence 1111110000000000 0 00 0000
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
|++++. + + +++.+......++.+|+|+++...+..............+.
T Consensus 181 --~~~~~~-------------~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (385)
T TIGR00710 181 --PETLPY-------------E---A-------------RIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGA 229 (385)
T ss_pred --CCCCCC-------------c---c-------------cCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcC
Confidence 000000 0 0 00000001234567788888877665544433333334444
Q ss_pred HHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc---c--Cc-chH
Q 037996 328 GQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF---P--FP-GSV 400 (535)
Q Consensus 328 ~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---~--~~-~~~ 400 (535)
+.+. ++.|.++.+.+.+.+...++..+++++.|++.||+++|+ .+..+..+..++..++.. . +. ...
T Consensus 230 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (385)
T TIGR00710 230 PFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS------LLRMGLILFAVSAVLLEITAILGLGSWAMI 303 (385)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 5444 467999999999999999999999999999999996552 233334343333332221 1 12 223
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
+...++.|++.+...+.......|..| ++++++.++.+.....++.+.+ .+.+.+
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~-~~~~~~ 358 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVG-YLVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 344566788888888888888888876 6899999999888766555635 455543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=209.76 Aligned_cols=399 Identities=16% Similarity=0.129 Sum_probs=258.8
Q ss_pred HHHHHcC--CChhhhHH----HHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 16 DIKASLG--YDQSTLNL----LGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 16 ~l~~~~~--~s~~~~~~----~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
.+.+.+| .++.+..+ +.+.+.+|..+ +++.|+++||+|||..++++.++..++.++..++ ... ++++.+
T Consensus 44 t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s--~~~--~~~e~l 119 (485)
T KOG0569|consen 44 TLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS--KSA--PSFEML 119 (485)
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH--HHh--hhHHHH
Confidence 3445666 55555443 45566667655 8999999999999999999999988887776544 223 468899
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHH-HHHhcC-ChhHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVY-LAVYGN-DSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~-~~~~~~-~~~~~~~~~~~~p~~~~~~ 165 (535)
.+.|++.|+..|........++.|..|+ .||.+..+...+..+|-.+...+. ..+++. +.|++.+....+|.+..++
T Consensus 120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~ 199 (485)
T KOG0569|consen 120 ILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA 199 (485)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 699988888777766665543332 234544 5577777777788877777
Q ss_pred HHhhhcccCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 166 FVYTIRIIPVVQHT-SHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 166 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
...++++.|+..-. .++...- +++.+..+
T Consensus 200 ~l~~~PESPk~Ll~~k~~~~~A--------------------------------------------------~~sl~~y~ 229 (485)
T KOG0569|consen 200 LLPFLPESPKYLLIKKGDEEEA--------------------------------------------------RKALKFYR 229 (485)
T ss_pred HHhcCCCCcchHHHHcCCHHHH--------------------------------------------------HHHHHHHh
Confidence 66666644431100 0000000 00000000
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHH-----HHHHHHhhhhc
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLI-----LFVATFGGLGS 319 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~ 319 (535)
.+ ++.+++ .++. .++.+..+..+.++.+++++++++.... +..........
T Consensus 230 G~----~~~~~~------------------~e~~--~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sG 285 (485)
T KOG0569|consen 230 GK----EDVEAE------------------IEEM--LREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSG 285 (485)
T ss_pred CC----CcchhH------------------HHHH--HHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcC
Confidence 00 000000 0000 0000001111123456788887754432 22223333444
Q ss_pred hhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc----
Q 037996 320 SLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP---- 395 (535)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~---- 395 (535)
......+...+.++.|+++.++.+.....++.+.+..+++.++.||+||| +++..+..++.+..+++...
T Consensus 286 i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR------pLll~~~~~~~~~~~~~~~~~~l~ 359 (485)
T KOG0569|consen 286 INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR------PLLLISLSLMAVALLLMSIALFLS 359 (485)
T ss_pred cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888899999999999999999999999999999999999644 56666666666655544321
Q ss_pred --C-cch---HHHHHHHHHhhhcch-hhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhh
Q 037996 396 --F-PGS---VYVASVIIGFSFGAQ-LPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAK 468 (535)
Q Consensus 396 --~-~~~---~~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~ 468 (535)
. .+. .+++.+++.++++.. -|+..-+.+|++|++.|+.+.+.....+.+..++. ...+..+.+..+
T Consensus 360 ~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv-~~~fp~l~~~~g------ 432 (485)
T KOG0569|consen 360 NSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIV-GFAFPPLQNVIG------ 432 (485)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------
Confidence 1 121 233444444444433 35566799999999999999999999999999884 467777777633
Q ss_pred hcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhh
Q 037996 469 KGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKF 524 (535)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 524 (535)
...|++..+.+.+..+..+...+|||++.-.++.+..
T Consensus 433 -------------------~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~ 469 (485)
T KOG0569|consen 433 -------------------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEEL 469 (485)
T ss_pred -------------------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 2567777777887777788888999976655655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=214.80 Aligned_cols=351 Identities=14% Similarity=0.091 Sum_probs=217.3
Q ss_pred cccccHHHHHHcCCChhhh-----HHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 037996 10 FGTYSKDIKASLGYDQSTL-----NLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKP 83 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~-----~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 83 (535)
+..+.|.+.+++|++..+. +++.+...+... ..++.|+++||+|||+++..+.++..++.++.+.. +
T Consensus 33 ~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~ 105 (408)
T PRK09874 33 VMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-------Q 105 (408)
T ss_pred hhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-------h
Confidence 3456788888999987653 565555555554 58999999999999999999998888876654332 5
Q ss_pred hHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 037996 84 AVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAI 162 (535)
Q Consensus 84 ~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~ 162 (535)
+++.+++.|++.|++.+. .+.....+.+++| ++|++++++...+..+|..+.+.+.+.+.+...
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------------- 170 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-------------- 170 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 688899999999998654 5666777888886 689999999887776776555433332222111
Q ss_pred HHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhh
Q 037996 163 SVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAI 242 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (535)
++..+.....+.+.. . +......++
T Consensus 171 -------------------~~~~~~~~~~~~~~~---~-----------------------------~~~~~~~~~---- 195 (408)
T PRK09874 171 -------------------LRPVFFITASVLFLC---F-----------------------------LVTLFCIRE---- 195 (408)
T ss_pred -------------------HHHHHHHHHHHHHHH---H-----------------------------HHHHHHhcc----
Confidence 111111000000000 0 000000010
Q ss_pred hhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHH-HHhhhhchh
Q 037996 243 WNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVA-TFGGLGSSL 321 (535)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 321 (535)
++.+ . + + + ++. +.....+.+++++++..... .........
T Consensus 196 ------~~~~-~--~------------~--------------~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T PRK09874 196 ------NFQP-V--S------------K--------------K-EML---HMREVVTSLKNPKLVLSLFVTTLIIQVATG 236 (408)
T ss_pred ------Cccc-c--c------------c--------------h-hhh---HHHHHHHhCcCCchHHHHHHHHHHHHHHHH
Confidence 0000 0 0 0 0 000 00112345566665543322 221111111
Q ss_pred hhhcchHHHHhhcCCCCcc----chhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-C
Q 037996 322 TAIDNLGQIGESLGYPTKT----IKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-F 396 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~----a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~ 396 (535)
......+.+.++.+.+..+ .+.+.++..++..++++..|+++||+++| ..+..+.....++.+.+... +
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~------~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE------KILITALIFSVLLLIPMSFVQT 310 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHHHHHHHHHHhcc
Confidence 1222334444443322222 34555667788889999999999999654 23334444444444444333 4
Q ss_pred cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCc
Q 037996 397 PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476 (535)
Q Consensus 397 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 476 (535)
.+.+++..++.|++.+...+...+.+.+..+++++|+.+++.+....+|..+ +|.+.|.+.+..+
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-gp~~~G~l~~~~g-------------- 375 (408)
T PRK09874 311 PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT-GPLMGAAISANYG-------------- 375 (408)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh-hHHHHHHHHhhcc--------------
Confidence 4556667778899988888888888889999999999999999999999977 9999999988743
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHH
Q 037996 477 KELICIGVKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 477 ~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
|+..|++.+++.+++.++.++
T Consensus 376 ----------~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 376 ----------FRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHH
Confidence 899999998888877665543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=213.95 Aligned_cols=355 Identities=15% Similarity=0.098 Sum_probs=217.4
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
+.+.|.+++++|+|+.+.+++.+.+.++..+ +++.|++.||+|||+++.++..++.++.+++.. +... ++++.++
T Consensus 46 ~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~--~~~a--~~~~~ll 121 (438)
T PRK10133 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP--AAEI--MNYTLFL 121 (438)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--HHhc--CCHHHHH
Confidence 4567999999999999999977777777765 999999999999999999999999999766421 1222 5689999
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
+.|+++|+|.|...+.....+.++.|+ +|++.+++....+++|..+.+.+...+...... +.......
T Consensus 122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~---------~~~~~~~~-- 190 (438)
T PRK10133 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP---------HQSQDVLD-- 190 (438)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------ccchhhhh--
Confidence 999999999999999999999888775 455678998888888876654332211100000 00000000
Q ss_pred hhcccCCCCCCcchhhHHH---HHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 169 TIRIIPVVQHTSHEAKVFY---HFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
...++. ...|+..+. ...++.+.. +..+. .. ....++
T Consensus 191 --~l~~~~--~~~w~~~~~~~w~~~f~~~~~-v~~~~-------------------------~~---~~~~~~------- 230 (438)
T PRK10133 191 --KMTPEQ--LSAYKHSLVLSVQTPYMIIVA-IVLLV-------------------------AL---LIMLTK------- 230 (438)
T ss_pred --ccChhh--HHHHHHHHHHHHHHHHHHHHH-HHHHH-------------------------HH---HHHHhc-------
Confidence 000000 000111100 000000000 00000 00 000000
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh-
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI- 324 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 324 (535)
.|+.+.+ + + ++ ++ ......+.++.+++|.++...+..++.........
T Consensus 231 ---~p~~~~~-~-----------~--------------~~-~~-~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~ 279 (438)
T PRK10133 231 ---FPALQSD-N-----------H--------------SD-AK-QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWS 279 (438)
T ss_pred ---CCCCCcc-c-----------c--------------cc-cc-ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 0100000 0 0 00 00 00001234577899988876655554443333222
Q ss_pred cchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 037996 325 DNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVA 403 (535)
Q Consensus 325 ~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 403 (535)
+..+++.+ ..|+++.+++.....+.++.++|++++|++.||+++| ..+..+.++..+..++.........+..
T Consensus 280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (438)
T PRK10133 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH------KVLAAYALIAMALCLISAFAGGHVGLIA 353 (438)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 33445444 5699999999999999999999999999999999654 2333444444443333332222233456
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
..+.|++.+..+|...+...+.+| ++.+++.++..+ ..+++.+ +|++.|.+.|.
T Consensus 354 ~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~-~~~i~G~l~~~ 407 (438)
T PRK10133 354 LTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGI-VTPVMGFVSDA 407 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHhH-HhccchH-HHHHHHHHHHh
Confidence 678899999999999999999887 457788888864 4466656 78999999887
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=210.89 Aligned_cols=330 Identities=22% Similarity=0.258 Sum_probs=245.7
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.++...|.+.+++|.++.+.+++.+...+...+ .++.|+++||+|||+.+.++.++..++.+...+. ++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 88 (352)
T cd06174 16 GLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SSLW 88 (352)
T ss_pred hhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------ccHH
Confidence 3455677888999999999999987777777754 9999999999999999999999999887765443 4688
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.+++.|++.|++.+...+....++.|++| |+|++++++.....++|..+.+.+...+.+...
T Consensus 89 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------------- 151 (352)
T cd06174 89 LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG----------------- 151 (352)
T ss_pred HHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 89999999999999999999999999997 589999999988888887765433332222111
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
++..+...... ..+..+ .. ..
T Consensus 152 ----------------~~~~~~~~~~~-------~~~~~~--------------------~~--------~~-------- 172 (352)
T cd06174 152 ----------------WRWLFLILAIL-------GLLLAL--------------------LL--------LF-------- 172 (352)
T ss_pred ----------------HHHHHHHHHHH-------HHHHHH--------------------HH--------HH--------
Confidence 11111100000 000000 00 00
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
. + |.++...+..++..........
T Consensus 173 ----------------------------------------------------~---~-~~~~~~~~~~~~~~~~~~~~~~ 196 (352)
T cd06174 173 ----------------------------------------------------L---L-RLLLLLALAFFLLSFGYYGLLT 196 (352)
T ss_pred ----------------------------------------------------H---H-HHHHHHHHHHHHHHhHHHHHHH
Confidence 0 0 5566666555555544444555
Q ss_pred chHHHHhhc-CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 326 NLGQIGESL-GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 326 ~~~~~~~~~-g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
+.+.+.++. |.++.+.+...+...++..+++++.+++.||+++|+. .+..+..+..++.+.+... +.+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 271 (352)
T cd06174 197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL-----LLLIGLLLAALGLLLLALAPSLALLLVA 271 (352)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 566665655 8888999999999999999999999999999975521 4555666666666555544 45567778
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.++.|++.+...+....++.|..|++++++.+|+.+....++..+ +|.+.|.+.|..+
T Consensus 272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~g~l~~~~~--------------------- 329 (352)
T cd06174 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL-GPLLAGLLLDTGG--------------------- 329 (352)
T ss_pred HHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccC---------------------
Confidence 888999999999999999999999999999999999999999977 9999999988633
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
|+..|.+.+++.+++.++..
T Consensus 330 ---~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 330 ---YGGVFLILAALALLAALLLL 349 (352)
T ss_pred ---cchHHHHHHHHHHHHHHHhe
Confidence 88899888888877766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=214.82 Aligned_cols=329 Identities=12% Similarity=-0.051 Sum_probs=210.1
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCA 90 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 90 (535)
...|.+.+++|+|+.+.++..+.+.++..+ .++.|+++||+|||++++++..+..++.+..+.+ ++++.+++
T Consensus 34 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~ 106 (406)
T PRK15402 34 PGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-------QSIEQFTL 106 (406)
T ss_pred cchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-------ccHHHHHH
Confidence 345778899999999999976667777654 8999999999999999999998888886665433 46888999
Q ss_pred HHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Q 037996 91 YICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYT 169 (535)
Q Consensus 91 ~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 169 (535)
.|+++|++.+...+.....+.|++| ++|++++++......++..+.+.+...+.+..
T Consensus 107 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---------------------- 164 (406)
T PRK15402 107 LRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL---------------------- 164 (406)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------------------
Confidence 9999999999988888888999997 46888888877665555544332222221111
Q ss_pred hcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCC
Q 037996 170 IRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQP 249 (535)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (535)
+++..+.....+.+. ... .... . .
T Consensus 165 -----------~w~~~~~~~~~~~~~---~~~-----------------------------~~~~--~-----------~ 188 (406)
T PRK15402 165 -----------PWRGMFVLFAALAAL---SFF-----------------------------GLWR--A-----------M 188 (406)
T ss_pred -----------CccHHHHHHHHHHHH---HHH-----------------------------HHHH--h-----------C
Confidence 122222210000000 000 0000 0 0
Q ss_pred CCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHH
Q 037996 250 PSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQ 329 (535)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (535)
|+++.+ .+ + +.+.++.....++.+++|.++...+..++............|.
T Consensus 189 ~~~~~~--------------~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 240 (406)
T PRK15402 189 PETAGR--------------VG-------------E-KLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPV 240 (406)
T ss_pred CCCCcc--------------cc-------------c-cccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 000000 00 0 0000000123456788898888766554433322223333444
Q ss_pred H-HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-----c-CcchHHH
Q 037996 330 I-GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-----P-FPGSVYV 402 (535)
Q Consensus 330 ~-~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-----~-~~~~~~~ 402 (535)
+ .++.|.++.+.+.......++..+|+++.|+++||+++| ..+..+.++..++.+++.. . +.+...+
T Consensus 241 ~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 314 (406)
T PRK15402 241 ILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR------SLIRMGLWPMVAGLLLAALATVISSHAYLWLTA 314 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence 4 456788888888887777788999999999999999654 3344455545444443321 1 2334556
Q ss_pred HHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 403 ASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 403 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
..++.|++.+...+......... +++++|+..+..++...++..+ |+.+.+.+++..
T Consensus 315 ~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-g~~~~~~l~~~~ 371 (406)
T PRK15402 315 GLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTV-GIELSKHAYLGG 371 (406)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHH-HHHHHHhcccCC
Confidence 67778888877666655544433 4589999999999999999866 999999998873
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-24 Score=212.47 Aligned_cols=330 Identities=13% Similarity=0.012 Sum_probs=200.8
Q ss_pred cCcccccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 037996 4 AGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAK 82 (535)
Q Consensus 4 ~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~ 82 (535)
.-....|....|.+.+++|+|+++.+++.+...++... .+++|+++||+|||+++..+.++..++.+++.+.
T Consensus 4 ~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------- 76 (377)
T PRK11102 4 PLAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------- 76 (377)
T ss_pred chHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------
Confidence 33455666778999999999999999977777777654 8999999999999999999999988887765443
Q ss_pred hhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037996 83 PAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAA 161 (535)
Q Consensus 83 ~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~ 161 (535)
++++.+++.|+++|++.+...+....++.+++| ++|++++++...+..+|..+.+.+...+.+..
T Consensus 77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------- 142 (377)
T PRK11102 77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-------------- 142 (377)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------
Confidence 467888999999999999999999999999997 57999999988877777765443322222111
Q ss_pred HHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHh
Q 037996 162 ISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELA 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
+++..+.....+.+.... ......++
T Consensus 143 -------------------~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~--- 168 (377)
T PRK11102 143 -------------------SWHAIFWVLALAAILAAA--------------------------------LVFFFIPE--- 168 (377)
T ss_pred -------------------ChHHHHHHHHHHHHHHHH--------------------------------HHHHhCCc---
Confidence 111222100000000000 00000000
Q ss_pred hhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchh
Q 037996 242 IWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSL 321 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 321 (535)
++++ +++ + +.+.+....+.++.+++|+++...+..++......
T Consensus 169 -------~~~~----------------~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (377)
T PRK11102 169 -------TLPK----------------ERR-------------Q-PFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMF 211 (377)
T ss_pred -------cCcc----------------ccc-------------C-CCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 0000 000 0 00000001234567788888776655444333333
Q ss_pred hhhc-chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHH---HHHHHHHhc-c-
Q 037996 322 TAID-NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLS---CIGLLLIAF-P- 395 (535)
Q Consensus 322 ~~~~-~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~---~i~~~~~~~-~- 395 (535)
.+.. .+.++.+..|+++.+.+...++..++..+++++.|++.||+++|+ .+..+.++. .+....... .
T Consensus 212 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 285 (377)
T PRK11102 212 SFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN------MLRFGLWIQFIMGIWLVVSALLDL 285 (377)
T ss_pred HHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333 334455567999999999999999999999999999999997553 233333322 222222221 1
Q ss_pred CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhh-hhHHHHHhHhH
Q 037996 396 FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLAS-PLGSYILNVKV 453 (535)
Q Consensus 396 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~ig~~i~~p~i 453 (535)
+.+...+...+.+.+.+...+.....+.|..| ++++++.++.+... .++..+ ++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~-g~~~ 342 (377)
T PRK11102 286 GFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIV-GALL 342 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHH-HHHH
Confidence 22223333333343334334444456667666 88999999877654 344433 5544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=212.27 Aligned_cols=328 Identities=13% Similarity=0.081 Sum_probs=197.2
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
..+....|.+.+++|.|..+.+++.+.+.++..+ .++.|+++||+|||++++++.+++.++.++...+ ++++
T Consensus 20 ~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-------~~~~ 92 (392)
T PRK10473 20 DMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-------ETSS 92 (392)
T ss_pred HHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------CcHH
Confidence 3455678999999999999999987777777755 8999999999999999999999988886665332 4578
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.+++.|+++|++.+..++....++.+++| ++|++++++......++..+.+.+...+.+...
T Consensus 93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g----------------- 155 (392)
T PRK10473 93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP----------------- 155 (392)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-----------------
Confidence 88899999999999999989999999996 689999999887766665544322221111111
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
++..+.....+.+...+. .....++
T Consensus 156 ----------------~~~~~~~~~~~~~i~~~~--------------------------------~~~~~~~------- 180 (392)
T PRK10473 156 ----------------WQSLFYTMAAMGILVLLL--------------------------------SLFILKE------- 180 (392)
T ss_pred ----------------hHHHHHHHHHHHHHHHHH--------------------------------HHHHcCC-------
Confidence 112121100000000000 0000000
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
.++++ + + ++ .......++.+++++++.......+.......+..
T Consensus 181 --~~~~~----~-------------~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (392)
T PRK10473 181 --TRPAR----A-------------P---------------AA--SSKPRENSESLLNRFFLSRLVITTLSVTVILTFVN 224 (392)
T ss_pred --CCCcc----c-------------C---------------Cc--cchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0 00 00011235677888877655444333222222333
Q ss_pred chHH-HHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 326 NLGQ-IGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 326 ~~~~-~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
..++ +.++.|+++.+.+...+...+...+++++.+++.||+++| ..+..+..+..++.+++... +....+..
T Consensus 225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (392)
T PRK10473 225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR------TLMLTSQVLFLAAGITLALSPSHAVSLFG 298 (392)
T ss_pred hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 3456799888889889999999999999999999999654 33445555555554444433 22233333
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
..+.+.+.+..++. ....+..|.++++ |.......++..+ ++.+.+++.++.+
T Consensus 299 ~~l~~~g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~-g~~~~~~l~~~~g 351 (392)
T PRK10473 299 ITLICAGFSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVC-GSSLWIWLAAVLG 351 (392)
T ss_pred HHHHHHHHHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 34444444333333 2334444544332 4444444556545 7777777777643
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=210.24 Aligned_cols=343 Identities=11% Similarity=0.037 Sum_probs=209.1
Q ss_pred HHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037996 15 KDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLV-GSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYI 92 (535)
Q Consensus 15 ~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r 92 (535)
+.+++++|.|..+++++.+.+.+.. +.+++.|.++||+|||+.+++ +.++..++.++.+. . ++++.+++.|
T Consensus 22 ~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-----~--~~~~~l~~~~ 94 (375)
T TIGR00899 22 LFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW-----N--RNYFLLLVLG 94 (375)
T ss_pred HHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh-----c--chHHHHHHHH
Confidence 3578899999999999766665554 558999999999999987655 44444444444322 2 5688888899
Q ss_pred HHhhcChhhHhhhhhhhHhhhcCC-CCcch--hhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Q 037996 93 CIGANSQNFANTGALVTCVKNFPE-SRGNM--IGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYT 169 (535)
Q Consensus 93 ~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~--~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 169 (535)
+++|.+.+...+....+..++.|+ +|+++ .+....+.++|..+.+.+.+.+.+...|+..+....++.+...+..
T Consensus 95 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~-- 172 (375)
T TIGR00899 95 VLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLV-- 172 (375)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHH--
Confidence 999888877777777777787764 45543 5666666667766654333322222111111111111100000000
Q ss_pred hcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCC
Q 037996 170 IRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQP 249 (535)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (535)
....++ +
T Consensus 173 ---------------------------------------------------------------~~~~~~----------~ 179 (375)
T TIGR00899 173 ---------------------------------------------------------------WLFLPS----------Y 179 (375)
T ss_pred ---------------------------------------------------------------HHhCCC----------c
Confidence 000000 0
Q ss_pred CCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh-cchH
Q 037996 250 PSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI-DNLG 328 (535)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 328 (535)
|++. + + +++ ..+.++.+++++++......++.+....... +.+.
T Consensus 180 ~~~~---~--------------~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T TIGR00899 180 PRGA---P--------------G--------------ALT----RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPL 224 (375)
T ss_pred ccCc---c--------------c--------------ccC----cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0000 0 0 000 0011234566666655544433333222222 3344
Q ss_pred HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHH
Q 037996 329 QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVYVASVII 407 (535)
Q Consensus 329 ~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~ 407 (535)
++.++.|.++.+.+.+.+...+...+++++.|++.||+++|+ .+..+.+...+....+.. ++.+..++..++.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR------LMLLAALAGVAFYTGLAADNSLWALLMLQLLN 298 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567999888888888777778889999999999997552 333333333333333322 2344455566677
Q ss_pred HhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccc
Q 037996 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCY 487 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (535)
|++.+...+....++.|..| ++++++.++.+....+|..+ +|.+.|.+.|..+ |
T Consensus 299 g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-g~~~~g~~~~~~g------------------------~ 352 (375)
T TIGR00899 299 AIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWII-AGSVGGILAERWS------------------------Y 352 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc------------------------c
Confidence 88888777777788888887 46679999999999999966 9999999988743 8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 037996 488 RLPFIILACVTCFGALVSF 506 (535)
Q Consensus 488 ~~~f~~~~~~~~~~~~l~~ 506 (535)
+..|.+.+++.+++.++..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 353 HAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 8889888887777766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=210.15 Aligned_cols=349 Identities=12% Similarity=0.034 Sum_probs=218.3
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
+...|.+++++|+|+.|.+++.+...++..+ +++.|++.||+|||+++.++.+++.++.++.+.+ ... ++++.++
T Consensus 23 ~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~--~~~--~~~~~~l 98 (410)
T TIGR00885 23 NPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA--AEI--MNYTLFL 98 (410)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--Hhh--ccHHHHH
Confidence 3677999999999999999987777777765 9999999999999999999999999996654222 222 4688899
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHHHHH
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSK-SLILLIGWLPAAISVIFV 167 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~ 167 (535)
+.|++.|+|.|...+.....+.+..| ++|++.+++..+++++|..+.+.+...+...... +...
T Consensus 99 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~-------------- 164 (410)
T TIGR00885 99 VGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD-------------- 164 (410)
T ss_pred HHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh--------------
Confidence 99999999999999999999989887 5799999999999888887765443332211000 0000
Q ss_pred hhhcccCCCCC------CcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHh
Q 037996 168 YTIRIIPVVQH------TSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELA 241 (535)
Q Consensus 168 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
......+..+. ..+++..|.....+ .++.. ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~------~~~~~-----------------------------~~~~~~--- 206 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAV------VLAVA-----------------------------LLIMLT--- 206 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-----------------------------HHHHHh---
Confidence 00000000000 00122222211110 00000 000000
Q ss_pred hhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchh
Q 037996 242 IWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSL 321 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 321 (535)
+.|+.+ + + + ++ +++ ...+.++.+|+|.++...+..++..+...
T Consensus 207 ------~~p~~~-~-~-----------~--------------~~-~~~---~~~~~~~~~~~~~~~~~~l~~f~yvg~e~ 249 (410)
T TIGR00885 207 ------KMPALN-H-S-----------D--------------AK-QIS---FSASLSRLARIRHYREGVIAQFFYVGVQI 249 (410)
T ss_pred ------cCCCCC-c-c-----------c--------------cc-ccc---chhhHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 001100 0 0 0 00 000 01123567788888887776666555544
Q ss_pred hhhcchHHHHhhc--CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcch
Q 037996 322 TAIDNLGQIGESL--GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGS 399 (535)
Q Consensus 322 ~~~~~~~~~~~~~--g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (535)
....+++.+.++. +.+...++...+.......+||++++++.||+++| ..+.+..++..+..++....+...
T Consensus 250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~------~~l~i~~~~~~~~~ll~~~~~~~~ 323 (410)
T TIGR00885 250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH------KVLMAYAIIGMALCLGSIFAGGHV 323 (410)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHcCChH
Confidence 4444455555544 33344455566667788899999999999999543 334445555555544444443334
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
..+..++.|++.+..+|...+...+..+++....+.++... .+|+.+ .|++.|.+.|..
T Consensus 324 ~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~-~p~l~G~~~d~~ 382 (410)
T TIGR00885 324 GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGI-VPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--Hhccch-HHHHHHHHHHHh
Confidence 46677788899999999999999999986654444444443 378866 899999999963
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=215.75 Aligned_cols=339 Identities=17% Similarity=0.123 Sum_probs=204.0
Q ss_pred ccccccccHH-HHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCh-
Q 037996 7 TYLFGTYSKD-IKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKP- 83 (535)
Q Consensus 7 ~~~~~~~~~~-l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~- 83 (535)
.+.++.+.|. +++++|+|+.+.+++.+...++..+ .++.|++.||+|||++++++.++..++.++++++ +
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-------~~ 89 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-------VQ 89 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-------hh
Confidence 4566778885 9999999999999987777777755 9999999999999999999999999987766543 4
Q ss_pred hHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 037996 84 AVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAI 162 (535)
Q Consensus 84 ~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~ 162 (535)
+++.+++.|+++|++.+. ++....++.+++| ++|++++++......+|..+.+.+..
T Consensus 90 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~--------------------- 147 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP--------------------- 147 (366)
T ss_pred hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH---------------------
Confidence 688899999999999664 4667888999997 68999999987666566555432211
Q ss_pred HHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhh
Q 037996 163 SVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAI 242 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (535)
.+.......... +...+|+..+.....+ ...+..+ ......++
T Consensus 148 -~l~~~~~~~~~~-~~~~~w~~~~~~~~~~--~~~~~~~-----------------------------~~~~~~~~---- 190 (366)
T TIGR00886 148 -PIIGSLIFGAGL-PAHLAWGWAFVIVPAG--ILLLPAL-----------------------------LIFFVGAD---- 190 (366)
T ss_pred -HHHHHHHhcccc-cccccccchhHHHHHH--HHHHHHH-----------------------------HHHHhccc----
Confidence 111101110000 0001233333110000 0000000 00000010
Q ss_pred hhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhh
Q 037996 243 WNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLT 322 (535)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 322 (535)
+|++.+++ ++ . + .++. .. ..+++.....++.+++|++|...+..++.......
T Consensus 191 ------~~~~~~~~------~~-~--~-----~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (366)
T TIGR00886 191 ------TPPGKPAT------GK-L--S-----FKGA-----RW--SVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLG 243 (366)
T ss_pred ------CCcccccc------hh-c--c-----cccc-----cc--cccchhHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 01000000 00 0 0 0000 00 00000011346788889988887766655544444
Q ss_pred hhcchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHH--hcc---C
Q 037996 323 AIDNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLI--AFP---F 396 (535)
Q Consensus 323 ~~~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~--~~~---~ 396 (535)
...+.+.+.+ .+|+++.+++.+.++..+.+.++++++|+++||+++|+. .. .+......+..++ ... +
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~ 317 (366)
T TIGR00886 244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK----LL--MSFLGVAMGAFLVVLGLVSPLS 317 (366)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh----HH--HHHHHHHHHHHHHHhcCCCcch
Confidence 4444555554 569999999989999999999999999999999976531 22 2222222222222 222 2
Q ss_pred cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhH
Q 037996 397 PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLG 445 (535)
Q Consensus 397 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig 445 (535)
.....+...+.+++.|...+.....+.+..| +++|+++|+.+..+++|
T Consensus 318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 318 LAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 2223344445555666666666777788876 79999999999887765
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=211.77 Aligned_cols=325 Identities=14% Similarity=0.079 Sum_probs=207.3
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAY 91 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 91 (535)
..|++++++|+++++.+++.+...++..+ .+++|+++||+|||+++..+.++..++.++.++. ++++.+++.
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~ 100 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------ESAAQLLVL 100 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHH
Confidence 34567899999999999987777777754 8999999999999999999998888876655332 468889999
Q ss_pred HHHhhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhh
Q 037996 92 ICIGANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTI 170 (535)
Q Consensus 92 r~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 170 (535)
|+++|++.+...+.....+.+++|+ +++++.+......+++..+.+.+.+.+.+...
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g---------------------- 158 (401)
T PRK11043 101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG---------------------- 158 (401)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------------
Confidence 9999999988887778888999974 67888887766666666554433332222211
Q ss_pred cccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCC
Q 037996 171 RIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPP 250 (535)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (535)
++..+.......+.. .+ +....+ +
T Consensus 159 -----------~~~~~~~~~~~~~~~---~~------------------------------~~~~~~------------~ 182 (401)
T PRK11043 159 -----------WQAIFATLFAITLLL---IL------------------------------PTLRLK------------P 182 (401)
T ss_pred -----------hHHHHHHHHHHHHHH---HH------------------------------HHHHcC------------C
Confidence 222221100000000 00 000000 0
Q ss_pred CCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHH
Q 037996 251 SEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQI 330 (535)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (535)
+++ ++ + ++ ++..+.++.+|+|++|...+...+.....+.+..+.|.+
T Consensus 183 ~~~------------------~~-----------~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 229 (401)
T PRK11043 183 SKK------------------AR-----------K-QS---QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFI 229 (401)
T ss_pred CCC------------------cc-----------c-cc---hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 000 00 0 00 011245677888888765544433333333344455666
Q ss_pred HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc--c-CcchHHHHHHHH
Q 037996 331 GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF--P-FPGSVYVASVII 407 (535)
Q Consensus 331 ~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~--~-~~~~~~~~~~l~ 407 (535)
.++.|+++.+.+.......++..+|+++.+++.||+++|+.. ........+..+....... . +.....+...+.
T Consensus 230 ~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (401)
T PRK11043 230 LEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL---PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM 306 (401)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 677899988888888888888899999999999998755311 1112222222222222222 2 223334445667
Q ss_pred HhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
|++.+..++.......+..| +++|++.|+.+.....++.+ ++.+.|.+.|.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~-~~~~~g~l~~~ 357 (401)
T PRK11043 307 AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFL-ASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHH-HHHHHHHccCC
Confidence 88888888877777777775 68999999999988777766 78888888764
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=220.64 Aligned_cols=326 Identities=21% Similarity=0.228 Sum_probs=210.4
Q ss_pred ccccH-HHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 11 GTYSK-DIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 11 ~~~~~-~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
....| .+.+++|.|..+++++.+...++.. ..++.|+++||+|||+++.++.++..++.++..++ ++++.+
T Consensus 16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~~ 88 (352)
T PF07690_consen 16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNFWLL 88 (352)
T ss_dssp HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhHHHH
Confidence 34556 7889999999999997777777665 59999999999999999999999999884444322 346788
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLI-LLIGWLPAAISVIF 166 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~ 166 (535)
++.|++.|++.+...+....++.|++|+ +|++++++...+.++|..+.+.+...+.+...+++. +..+...++..++.
T Consensus 89 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 89 LIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 8999999999999999999999999975 899999999998888886654333322211111111 11111111000000
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
..+ .++
T Consensus 169 ~~~------------------------------------------------------------------~~~-------- 174 (352)
T PF07690_consen 169 ILF------------------------------------------------------------------LPE-------- 174 (352)
T ss_dssp HCC------------------------------------------------------------------C----------
T ss_pred hhh------------------------------------------------------------------hhh--------
Confidence 000 000
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC-cHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDY-TILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
++.+... ++++++ + +.++++.. ..++.++++.+|......++..........
T Consensus 175 --~~~~~~~-----------------~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF07690_consen 175 --PPPPRER-----------------ESPKES------E--SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSF 227 (352)
T ss_dssp ---STTTT-------------------SSTTT------T----HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred --ccccccc-----------------cccccc------c--cccccccccccccccccchhhhhhhhhhHHHHHHHHhhc
Confidence 0000000 000000 0 00000011 134566777777444444443323333444
Q ss_pred chHHH-HhhcCCC-CccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc---c-Ccch
Q 037996 326 NLGQI-GESLGYP-TKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF---P-FPGS 399 (535)
Q Consensus 326 ~~~~~-~~~~g~~-~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---~-~~~~ 399 (535)
+.+.+ .+.+|.+ ..+.+...++..+...+++++.|+++||+++++ ..........+..+.+.. . +...
T Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (352)
T PF07690_consen 228 FLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR------RLLIAILLLILGALGLLLLPFSSSPVW 301 (352)
T ss_dssp HHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHCCSHHHCHHHH
T ss_pred ccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 55555 5677888 678888899999999999999999999986531 222222233333222222 2 2345
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhH
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNV 451 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p 451 (535)
.++..++.|++.+...+....++.|.+|++++|++.|+.+....+++.+ +|
T Consensus 302 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-gP 352 (352)
T PF07690_consen 302 LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII-GP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-CC
Confidence 6667778899999889999999999999999999999999999999966 76
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=209.84 Aligned_cols=346 Identities=15% Similarity=0.059 Sum_probs=204.0
Q ss_pred cccccccHHHHHHcC--CChhhhHHHHHhh--h---hcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcC
Q 037996 8 YLFGTYSKDIKASLG--YDQSTLNLLGFFK--D---LGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGK 79 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~--~s~~~~~~~~~~~--~---~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~ 79 (535)
+.++...+.+.+++. .++++.+...+.. . +.. +.+++.|+++||+|||+++.++.++..++.++++++ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~ 87 (394)
T TIGR00883 10 YLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL--PS 87 (394)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC--CC
Confidence 456667777777754 5566666632221 1 222 237899999999999999999999988887665432 11
Q ss_pred CCCh---hHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHH
Q 037996 80 IAKP---AVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLI 155 (535)
Q Consensus 80 ~~~~---~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~ 155 (535)
.... ....+++.|+++|++.+...+....++.|++| ++|++++++...+..+|..+.+.+...+.
T Consensus 88 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~----------- 156 (394)
T TIGR00883 88 YATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS----------- 156 (394)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 1000 01247789999999999999999999999996 68999999988887777665432221110
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHh
Q 037996 156 GWLPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIA 235 (535)
Q Consensus 156 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (535)
.. +.... ....+++..+... ++..++. . .+...
T Consensus 157 -----------~~-~~~~~--~~~~~w~~~~~~~-------~~~~~~~------------------------~--~~~~~ 189 (394)
T TIGR00883 157 -----------YL-LGDDA--LLEWGWRIPFLVS-------AVLVLIG------------------------L--YLRRN 189 (394)
T ss_pred -----------Hh-cCHHH--hhccchHHHHHHH-------HHHHHHH------------------------H--HHHHh
Confidence 00 00000 0001122222100 0000000 0 00000
Q ss_pred hhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHH--HHHHHHHH
Q 037996 236 IREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSID--MLILFVAT 313 (535)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 313 (535)
.++ +++.. + + +++++ ....+.++.+++++ ++......
T Consensus 190 ~~~----------~~~~~---~-----------~--------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T TIGR00883 190 LEE----------TPVFE---K-----------A--------------QEKHK---KKRGPIRETLTKHRKPFLLGLGLV 228 (394)
T ss_pred cCC----------ChhHH---H-----------H--------------Hhccc---cccCCHHHHHHhchHHHHHHHHHH
Confidence 000 00000 0 0 00000 01123455666655 55555444
Q ss_pred HhhhhchhhhhcchHHHH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHH-H
Q 037996 314 FGGLGSSLTAIDNLGQIG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLL-L 391 (535)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~-~ 391 (535)
++..........+.+.+. ++.|.++.+.+....+..+.+.+++++.|+++||+++|+ .....+.+....+.. .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~~~~~~~~ 303 (394)
T TIGR00883 229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-----VLIIFTVLAALLAVPLL 303 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-----HHHHHHHHHHHHHHHHH
Confidence 443333333334455555 567888888998899999999999999999999997552 222222222222211 1
Q ss_pred Hhc---cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHh-hhhhhHHHHHhHhHhHhhhhh
Q 037996 392 IAF---PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQ-LASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 392 ~~~---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~ig~~i~~p~i~g~l~~~ 460 (535)
... .+.+......++.|++.+...+...+.+.|.+|+++|+++.++.+ ....++..+ +|.+.|.+.|+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~-~p~~~g~l~~~ 375 (394)
T TIGR00883 304 MALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGF-APYIAAALVAM 375 (394)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhH-HHHHHHHHHHH
Confidence 111 133444555677788888888888999999999999999999854 445677755 99999999987
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=210.25 Aligned_cols=327 Identities=11% Similarity=0.015 Sum_probs=204.5
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
....+++++++|+|..+++++.+...+... ..++.|+++||+|||++++++.++..++.++..+. ++++.++
T Consensus 28 ~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 100 (395)
T PRK10054 28 PFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-------NNVTLVV 100 (395)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-------hHHHHHH
Confidence 344567788999999999997666555554 59999999999999999999998888876655433 5677788
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
+.|++.|.+.+...+.......|.+| ++|+++.|+......+|..+.+++...+...+
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g--------------------- 159 (395)
T PRK10054 101 LFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQS--------------------- 159 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 88888888777777777788888886 57999999988887787766543322221111
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCC
Q 037996 169 TIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQ 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
++..+....... ++. .+.+....+++
T Consensus 160 -------------~~~~f~~~~~~~-------~i~-------------------------~i~~~~~~~~~--------- 185 (395)
T PRK10054 160 -------------INLPFWLAAICS-------AFP-------------------------LVFIQIWVQRS--------- 185 (395)
T ss_pred -------------cCcHHHHHHHHH-------HHH-------------------------HHHHHHHHhcc---------
Confidence 122222100000 000 00000001100
Q ss_pred CCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchH
Q 037996 249 PPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLG 328 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (535)
+++++ + + ++ +..+.++.+|+|++|......++.......+....+
T Consensus 186 ~~~~~----------------------~--------~-~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 230 (395)
T PRK10054 186 EKAIA----------------------T--------E-TG----SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCIS 230 (395)
T ss_pred ccccc----------------------c--------c-hh----hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHH
Confidence 00000 0 0 00 001125677888888776554443322222222223
Q ss_pred HHH---hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc--CcchHHHH
Q 037996 329 QIG---ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP--FPGSVYVA 403 (535)
Q Consensus 329 ~~~---~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~ 403 (535)
.+. ++.+.++...+...+...+.....+...|++.||.++| ..+..+..+..++...+... +.+...+.
T Consensus 231 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (395)
T PRK10054 231 QYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR------PLMTAGTLCFVIGLVGFIFSGNSLLLWGMS 304 (395)
T ss_pred HHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch------hHHHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 332 23345555566677777776677778888888988543 34445555555555444432 23344556
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
..+.|++.+...+.....+.+..|++.+++.++..+ ...+|..+ ||.+.|.++|+.+
T Consensus 305 ~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~-Gp~~~G~l~~~~g 361 (395)
T PRK10054 305 AAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAI-NPLVSGVILTTLP 361 (395)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHH-HHHHHHHHHHHcC
Confidence 777788877767777788999999999999988765 45678866 9999999999854
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=206.37 Aligned_cols=325 Identities=13% Similarity=0.017 Sum_probs=196.8
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCA 90 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 90 (535)
...+.+.++++.++.+.+|+.+.+.+... +.+++|+++||+|||++++++.++..++.+.+++. .+ .++
T Consensus 24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-------~~---~~~ 93 (393)
T PRK11195 24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-------IH---PLL 93 (393)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------HH---HHH
Confidence 33456678999999999997777777775 59999999999999999999999988886654332 22 267
Q ss_pred HHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Q 037996 91 YICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYT 169 (535)
Q Consensus 91 ~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 169 (535)
.|+++|++.++.+|+..+++.|++| ++|++++|+......++..+.+.+.+.+.+.. ++
T Consensus 94 ~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~------------------- 153 (393)
T PRK11195 94 AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AE------------------- 153 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------------------
Confidence 8999999999999999999999997 57999999988776666555432222221110 00
Q ss_pred hcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCC
Q 037996 170 IRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQP 249 (535)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (535)
..+. +....+++.. . .....++ +
T Consensus 154 --------------~~~~------i~~~~~~~~~-~--------------------------~~~~l~~----------~ 176 (393)
T PRK11195 154 --------------AALA------VCALIYLLAA-L--------------------------FNLFIPR----------L 176 (393)
T ss_pred --------------HHHH------HHHHHHHHHH-H--------------------------HHhcCCC----------C
Confidence 0000 0000000000 0 0000000 0
Q ss_pred CCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHH
Q 037996 250 PSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQ 329 (535)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (535)
+++. + +.++ +.. +..++ .....++.+++|.+........+.+..........+.
T Consensus 177 ~~~~---~-----------~~~~----~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (393)
T PRK11195 177 GARR---P-----------GQSW----NPI----ALLRD----FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLA 230 (393)
T ss_pred cccc---c-----------ccCC----CHH----HHHHH----HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0000 000 00000 0011245567776654443332222222222223333
Q ss_pred HH-hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHH
Q 037996 330 IG-ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVII 407 (535)
Q Consensus 330 ~~-~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~ 407 (535)
+. +.+|.++.+++...+..+++..+|.++.+++.||.+++ ..+..+.. ..+..+.+... +.+...+..++.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~------~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL------RVLPAGIL-MGLVVLLMALQHSLLPAYPLLILI 303 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------chHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33 45699999999999999999999999999998876433 22233332 22332233333 333445566678
Q ss_pred HhhhcchhhHHHHHHHHhhccCc-ccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 408 GFSFGAQLPLIFAIISELFGLKY-YSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
|++.+...+...+.+++..|++. +|.+.++.++...++..+ +..+.+.+
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~-~~~~~~~~ 353 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLL-MLGLYSLL 353 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHH-HHHHHHHH
Confidence 88888777777777887655444 699999999999999866 87777755
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=204.59 Aligned_cols=334 Identities=12% Similarity=-0.011 Sum_probs=198.5
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
+....|++.++++.+.++.++..+.+.++.. ..+++|+++||+|||++++.+.+++.++.+++.++ ++++.+
T Consensus 35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~~~l 107 (413)
T PRK15403 35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------TSMTQF 107 (413)
T ss_pred hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------CCHHHH
Confidence 3445578899999999999996666666665 59999999999999999999999988887665432 568899
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
++.|+++|++.+...+.....+.|++| ++|++++++...+..++..+.+.+.+.+.+..
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-------------------- 167 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-------------------- 167 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 999999999998776777777889997 57899999988887777755432222222111
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
+|+..|.....+.+.. .+ . ... .
T Consensus 168 -------------gw~~~f~~~~~~~~i~---~~--------------------------~----~~~-~---------- 190 (413)
T PRK15403 168 -------------HWKVLFAIIAVMGLIA---FV--------------------------G----LLL-A---------- 190 (413)
T ss_pred -------------CHHHHHHHHHHHHHHH---HH--------------------------H----HHH-h----------
Confidence 1222222110000000 00 0 000 0
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
-|+..++ + + + +...+......++.+|||.+|...+...+.......+....
T Consensus 191 -lp~~~~~-~-----------~---------------~-~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~ 241 (413)
T PRK15403 191 -MPETVKR-G-----------A---------------V-PFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVS 241 (413)
T ss_pred -CCCCccc-c-----------C---------------C-CCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0000000 0 0 0 00000001245678899999988776655444444444455
Q ss_pred HHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCch-HHHHHHHHHHHHHHHHHhccCcc-hHHHHH
Q 037996 328 GQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRP-LMLTLVLVLSCIGLLLIAFPFPG-SVYVAS 404 (535)
Q Consensus 328 ~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~-~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 404 (535)
|.+.++ .|+++.+.++.......+..++..+.+.+.++..+++...+. ....++.++..++.. ..++.+ ..++..
T Consensus 242 P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~--~~~~~~~~~~~~~ 319 (413)
T PRK15403 242 PVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL--LWPHVWLWSVLGT 319 (413)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH--HccccHHHHHHHH
Confidence 655554 589999888888777777777777776655433221100000 011112111111111 122222 245566
Q ss_pred HHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 405 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
++.++|.+...+......-.. ....+|++.++.+.....+..+ ++...+++.+.
T Consensus 320 ~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~-~~~~~g~~~~~ 373 (413)
T PRK15403 320 SLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAV-SVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 777888777776665433211 1235799999998888777766 78888887666
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=208.71 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=124.2
Q ss_pred HHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHh----hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCC
Q 037996 297 ILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGE----SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKM 372 (535)
Q Consensus 297 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~ 372 (535)
.++.+|+|.+|.+.+................+.+.. +.+.+..+.+.+.++..+...++.+++|+++||+++|+
T Consensus 216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-- 293 (420)
T PRK09528 216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-- 293 (420)
T ss_pred HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--
Confidence 456778888776554333222211112212232222 23555566788888888899999999999999997653
Q ss_pred CchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhH-HhhhhhhHHHHHh
Q 037996 373 PRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNC-GQLASPLGSYILN 450 (535)
Q Consensus 373 ~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~ig~~i~~ 450 (535)
.+..+.++..++.+++... +.+.+++..++.|++.+...+....++.|.+|++.+++.++. .++...+|..+ +
T Consensus 294 ----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i-g 368 (420)
T PRK09528 294 ----ALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF-L 368 (420)
T ss_pred ----hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH-H
Confidence 3344455555555555443 555566667777777776666667888999999999998876 56777888866 9
Q ss_pred HhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 451 VKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 451 p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|.+.|++.|..+ |+.+|.+.+++.+++.++.+...++
T Consensus 369 ~~~~G~l~~~~G------------------------~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 369 STLAGNLYDSIG------------------------FQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHhhC------------------------chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999744 8999998888777666555444433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=207.11 Aligned_cols=193 Identities=11% Similarity=0.068 Sum_probs=136.2
Q ss_pred HHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCC--------ccchhhHHHHHHhhHHHHHHhhhhchhhhh
Q 037996 297 ILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPT--------KTIKSFVSLVSIWNYFGRVFAGFVSEGLLA 368 (535)
Q Consensus 297 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~ 368 (535)
.++.+|+|.++.+.+..++..........+.+.+.++.|.++ +..+...++..+...++.+..|+++||+++
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~ 280 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI 280 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 456788898877766655433322222233344445666544 455888888899999999999999999964
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhcc--Cc---chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHh-hhh
Q 037996 369 KYKMPRPLMLTLVLVLSCIGLLLIAFP--FP---GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQ-LAS 442 (535)
Q Consensus 369 ~~~~~r~~~~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~ 442 (535)
| ..+..+.++..++..++... +. ..+++..++.|++.+...+....++.|.+|++.+++++|+.+ ...
T Consensus 281 r------~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~ 354 (418)
T TIGR00889 281 K------KVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN 354 (418)
T ss_pred H------HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 4 45566666666665444432 22 234456777888888777777889999999999999999997 567
Q ss_pred hhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 443 PLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 443 ~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
.+|..+ ||.+.|++.|+.+... ..+|+..|.+.+++.+++.++.+++.+++++
T Consensus 355 ~lg~~i-Gp~l~G~l~~~~g~~~------------------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 355 GFGSLL-GYILSGVMVEKMFAYG------------------TFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred hhHHHH-HHHHHHHHHHHhcccc------------------CCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 888866 9999999999843100 1248999998888888888777777765544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=200.97 Aligned_cols=324 Identities=11% Similarity=0.005 Sum_probs=212.4
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHH----HHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVL----LVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~----~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
+.|.+.+++|+|.++++++.+.+.+.. +.++++|+++||+|||+.. .++..++.+. ..... ++++.
T Consensus 26 ~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~-------~~~~~--~~~~~ 96 (382)
T TIGR00902 26 FFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA-------FSAGA--HNAWL 96 (382)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-------HHHhh--hhHHH
Confidence 345778899999999999655555555 4599999999999985432 2222222221 11112 56899
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
+++.|+++|.+.+...+...++..+ ++++|+++.|......++|..+.+++.+.+.+...
T Consensus 97 l~~~~~l~~~~~~~~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g------------------- 156 (382)
T TIGR00902 97 LFIAIGLFALFFSAGMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD------------------- 156 (382)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-------------------
Confidence 9999999998888877777776554 46789999999887777877765544333332211
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
++..+...... ... .+. ....++
T Consensus 157 --------------~~~~f~~~~~~---~~~-~~~------------------------------~~~~~~--------- 179 (382)
T TIGR00902 157 --------------EQNILAILTAG---LAF-MLI------------------------------GFLIKP--------- 179 (382)
T ss_pred --------------hhHHHHHHHHH---HHH-HHH------------------------------HHHcCC---------
Confidence 11111100000 000 000 000000
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
++++. + +++ + ++. .+..+.++.+|+|++|...+..++.......+..+.
T Consensus 180 -~~~~~---~------------~~~------------~-~~~--~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~ 228 (382)
T TIGR00902 180 -TIPPK---D------------AIP------------E-DES--QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS 228 (382)
T ss_pred -CCCCC---c------------ccc------------c-ccc--ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 000 0 000 012245788999999988776665544444444455
Q ss_pred HHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHH
Q 037996 328 GQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVI 406 (535)
Q Consensus 328 ~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l 406 (535)
+.+.++.|.++.+.+...++..+..+++.++++++.||++.| ..+..+.+...+...++... +.+.++...++
T Consensus 229 ~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l 302 (382)
T TIGR00902 229 AIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR------DLLLISAIACVGRWAIIGAIEAFPLIFLLQIL 302 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH------HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 555678999999999998888888888888898988988543 45567777777776666654 45666777889
Q ss_pred HHhhhcchhhHHHHHHHHhhccCcccchhhHHhh-hhhhHHHHHhHhHhHhhhhhh
Q 037996 407 IGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQL-ASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 407 ~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~ig~~i~~p~i~g~l~~~~ 461 (535)
.|+..+...+....++.+. |++++++.+++.+. ..++|..+ +|.+.|+++|+.
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~-g~~~~G~l~~~~ 356 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAI-FTAFAGFIYPTL 356 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 9999999888888899988 88899999999864 56788866 999999999984
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=206.85 Aligned_cols=355 Identities=11% Similarity=0.036 Sum_probs=218.7
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhhccccccchhhhcccc-----cchHH-HHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEIT-----PTWFV-LLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
..|...++.|.|.++++.++..... ..+.+++|+++||+ |||+. ++++.+...++...+++ . .+..+++
T Consensus 34 ~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~--~--~~~~~l~ 108 (491)
T PRK11010 34 TLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGF--L--EPGTQLR 108 (491)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHH--c--CCcchHH
Confidence 4566677889999999986443333 35689999999999 99986 55666665555444322 1 1224578
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.+.+.+++.|++.+...+...++..|++| ++||++.++...++.+|..+.+.+...+.+..
T Consensus 109 ~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~------------------ 170 (491)
T PRK11010 109 WLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY------------------ 170 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------
Confidence 88889999999999999999999999997 78999999998888888766553333222210
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
.+|+..|.....+.+.. . ......+
T Consensus 171 --------------~GWr~~f~i~a~l~ll~----~-----------------------------l~~~~~~-------- 195 (491)
T PRK11010 171 --------------LGWQGMYWLMAALLIPC----I-----------------------------IATLLAP-------- 195 (491)
T ss_pred --------------cCHHHHHHHHHHHHHHH----H-----------------------------HHHHhcC--------
Confidence 11222232111000000 0 0000001
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhh-hchhhhh
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGL-GSSLTAI 324 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 324 (535)
++++.. + ++ ++.++....+.++.++++.+|......++.. .......
T Consensus 196 ---e~~~~~--~------------~~---------------~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~ 243 (491)
T PRK11010 196 ---EPTDTI--P------------VP---------------KTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMS 243 (491)
T ss_pred ---CCcccc--c------------cc---------------cchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 00 0000000123456777777765544433222 2222233
Q ss_pred cchHHHHhhcCCCCccchhhHH-HHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHH---HHHHhcc--Ccc
Q 037996 325 DNLGQIGESLGYPTKTIKSFVS-LVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIG---LLLIAFP--FPG 398 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~-~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~---~~~~~~~--~~~ 398 (535)
+..+++.++.|+++.+.+.... ...++.++|.+++|+++||+++|+ . +.++.++..+. ...+... +..
T Consensus 244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-----~-l~i~~~l~~l~~l~~~~l~~~~~~~~ 317 (491)
T PRK11010 244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-----A-LMIFGILQGVSNAGYWLLSITDKNLY 317 (491)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----H-HHHHHHHHHHHHHHHHHHHhccccHH
Confidence 4556655678999999998874 556889999999999999997652 2 22222222222 1222222 222
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccc
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKE 478 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~ 478 (535)
.+....++..++.|...+...+...+..+++..++.+|+.+....+|..+ ++.+.|++.|..+
T Consensus 318 ~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~-~~~~~G~l~~~~G---------------- 380 (491)
T PRK11010 318 SMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY-VGPVAGWFVEAHG---------------- 380 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC----------------
Confidence 23333444444455555666788888999999999999999999999876 6788999999743
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 479 LICIGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 479 ~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
|+..|.+.+++.+.+.++...+
T Consensus 381 --------~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 381 --------WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHH
Confidence 8889988888888876666554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=196.77 Aligned_cols=328 Identities=14% Similarity=0.039 Sum_probs=204.9
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
+....|.+.+++|+|+.+.+++.+.+.++..+ .+++|+++||+|||+++.++.++..++.+..... ++++.+
T Consensus 27 ~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l 99 (394)
T PRK11652 27 YVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------HSLTVL 99 (394)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHHH
Confidence 33456889999999999999977777777754 8999999999999999999999888886665332 468889
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
++.|++.|++.+...+.......++++ ++|++++++...+..++..+.+.+...+.+..
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-------------------- 159 (394)
T PRK11652 100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-------------------- 159 (394)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 999999999999887877788888886 57899998877776566544332222221111
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
+++..+.......+. .... .....+
T Consensus 160 -------------g~~~~f~~~~~~~~~---~~~~-----------------------------~~~~~~---------- 184 (394)
T PRK11652 160 -------------GWRACYLFLLLLGAG---VTFS-----------------------------MARWMP---------- 184 (394)
T ss_pred -------------ChHHHHHHHHHHHHH---HHHH-----------------------------HHHhCC----------
Confidence 122222211000000 0000 000000
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
++++. + + ++++ .....++.+++|++|......+........+....
T Consensus 185 ---~~~~~-------------~--------------~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (394)
T PRK11652 185 ---ETRPA-------------D--------------A--RRTR--VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACS 230 (394)
T ss_pred ---ccCcc-------------c--------------c--chhH--HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00000 0 0 0000 11234567788888765554433322222222233
Q ss_pred HHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc--c-CcchHHHH
Q 037996 328 GQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF--P-FPGSVYVA 403 (535)
Q Consensus 328 ~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~--~-~~~~~~~~ 403 (535)
+.+.+ ..|+++.+.+++.....++..++.++.+++.||.+++ ............+....... . +.+.....
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (394)
T PRK11652 231 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVP 305 (394)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444 4788888888887777778888888888888887521 11111222222222222221 1 33445566
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
.++.+++.+...+.......|.+| +++|++.++.+....+|..+ ++.+.+.+.+.
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~-~~~~~~~~~~~ 360 (394)
T PRK11652 306 AALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGL-AALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHH-HHHHHHHccCC
Confidence 677888888888888888888886 68899999999999999976 88888777554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=181.27 Aligned_cols=348 Identities=15% Similarity=0.111 Sum_probs=245.4
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
+.+...+++++|+|+|.++.+.+++.-.+.. .++++..+++.|+|.++.+..++++.++|.++= .. .+.+.
T Consensus 30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR------~~--~~~~~ 101 (395)
T COG2807 30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIR------SL--GGLPL 101 (395)
T ss_pred hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH------hc--ccHHH
Confidence 4566778999999999999999888777766 469999999999999999999999999985542 11 23567
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
++..-.+.|.|.+..+..-+..+-++|||+-+..+|++....++++.+.+.+.--+-++.
T Consensus 102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~-------------------- 161 (395)
T COG2807 102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-------------------- 161 (395)
T ss_pred HHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--------------------
Confidence 888889999999999999999999999999999999999998888877653322111111
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
.+|+.....+....+ +.+++ . ..+..
T Consensus 162 ------------~gW~~aL~~WAl~al---lAl~~--------------------------W------lPq~~------- 187 (395)
T COG2807 162 ------------GGWRGALGFWALLAL---LALLI--------------------------W------LPQAL------- 187 (395)
T ss_pred ------------ccHHHHHHHHHHHHH---HHHHH--------------------------H------hhhcc-------
Confidence 112222211111100 00000 0 00000
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
++.. .....+..+....+|||.-|.+.+.+..+....+..+.++
T Consensus 188 -r~~~-----------------------------------~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WL 231 (395)
T COG2807 188 -REQA-----------------------------------ASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWL 231 (395)
T ss_pred -cccc-----------------------------------cccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHH
Confidence 0000 0000001112457899999999888877777777778889
Q ss_pred HHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 037996 328 GQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVII 407 (535)
Q Consensus 328 ~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 407 (535)
|.+..+.|+|+.+++.+.++..+......+....+.+|..+ +++........+.++...+.+......+...+++
T Consensus 232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n-----~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~ll 306 (395)
T COG2807 232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN-----QRPLVVLALLLMLVGLVGLLLAPGQLPILWALLL 306 (395)
T ss_pred HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999998543 3344445555555555544433333344446899
Q ss_pred HhhhcchhhHHHHHHHHhhc-cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccccccc
Q 037996 408 GFSFGAQLPLIFAIISELFG-LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKC 486 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (535)
|++.|..|++.-..+.+... ++..+.-.|+...++.+-... ||++.|++.|. +++
T Consensus 307 G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~-GP~l~G~lhDa-----------------------~gs 362 (395)
T COG2807 307 GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF-GPWLFGFLHDA-----------------------TGS 362 (395)
T ss_pred hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh-hhhhHhHHHHh-----------------------cCC
Confidence 99999999998887777654 456666677777777666645 99999999999 667
Q ss_pred chHHHHHHHHHHHHHHH
Q 037996 487 YRLPFIILACVTCFGAL 503 (535)
Q Consensus 487 ~~~~f~~~~~~~~~~~~ 503 (535)
|+..+...+.+.++..+
T Consensus 363 w~~~~~~l~~~~i~m~i 379 (395)
T COG2807 363 WSAPLVLLALATLLMLI 379 (395)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99888777666554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=203.55 Aligned_cols=320 Identities=15% Similarity=0.096 Sum_probs=213.9
Q ss_pred HHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037996 17 IKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIG 95 (535)
Q Consensus 17 l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~ 95 (535)
+.+|.+....+++++.+.+.+++++ .+++|.+.||++..+.+....+..++-.++.+. . +|++.+++.|++.
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~-----~--~s~~~~ialr~ll 144 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA-----V--HSFPGLIALRFLL 144 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----H--hhhHHHHHHHHHH
Confidence 3478888999999988888888865 999999999999777776666665444333221 2 5799999999999
Q ss_pred hcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhc-------CChhHHHHHHHHHHHHHHHHHH
Q 037996 96 ANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYG-------NDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 96 Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~-------~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
|+.++..+|....++..||. ++||+.+|+..+..++|+.+.+.+.++++. .+|++.++..+++.+..+++..
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 99999999999999999995 689999999999999999998888888642 2455666666666666666655
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
+.++..|++..-.++++... ..++ .+
T Consensus 225 ~~lp~~P~~~~fl~~~ek~~------------------------------------------------~~~~-----~~- 250 (495)
T KOG2533|consen 225 FFLPDNPSKAWFLTDEEKEL------------------------------------------------VVER-----LR- 250 (495)
T ss_pred EEecCChhhccccchHHHHH------------------------------------------------HHHH-----HH-
Confidence 55554443211000000000 0000 00
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
+.+ +...++ +.+...+++++++|..|.+.++.++.......+.++.
T Consensus 251 ---------------------~~~------------~~~~~~-~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~l 296 (495)
T KOG2533|consen 251 ---------------------ESP------------SGGIEN-KFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWL 296 (495)
T ss_pred ---------------------hcc------------CCCccc-ccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHH
Confidence 000 000000 1345678999999999999999999888888778888
Q ss_pred HHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHH-HHHHHHHHHHHHhcc-CcchHHHHH
Q 037996 328 GQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTL-VLVLSCIGLLLIAFP-FPGSVYVAS 404 (535)
Q Consensus 328 ~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~-~~~~~~i~~~~~~~~-~~~~~~~~~ 404 (535)
|.+.++ .|++..++..+..++.++++++.+++|+++||+.. ...++..... ..+...++...+... .........
T Consensus 297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~--~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 374 (495)
T KOG2533|consen 297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKT--IFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAF 374 (495)
T ss_pred HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHH
Confidence 888777 57999999999999999999999999999999530 0022233333 333344443333332 233333333
Q ss_pred HHHHhhhcchhhHHHHHHHHhhccCcccc
Q 037996 405 VIIGFSFGAQLPLIFAIISELFGLKYYST 433 (535)
Q Consensus 405 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~ 433 (535)
.....+.+...+.....+.+......+..
T Consensus 375 ~~~~~~~~~~~~~~~~w~s~~~~g~~k~~ 403 (495)
T KOG2533|consen 375 LIGPYGLIATAIIALSWTSANLAGNTKAL 403 (495)
T ss_pred HhcchhhHHHHHHHHhhccccccchHHhH
Confidence 34444455555666666666665443333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=222.35 Aligned_cols=344 Identities=14% Similarity=0.058 Sum_probs=210.0
Q ss_pred ccHHHHHHcCCChhh--hHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 13 YSKDIKASLGYDQST--LNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~--~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
..+.+..+++.+.+. .+++.+.+.++.+ +++++|+++||+|||++++++.++..++.++..++ ... ++++.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~l~ 107 (1146)
T PRK08633 32 IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLA--YYL--GWFWLAF 107 (1146)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHH--HHH--ccHHHHH
Confidence 445566677766444 5676666666665 59999999999999999998887766655443322 122 3588999
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
+.|+++|++.+...++...++.+++| ++|++++|+...+..+|..+.+.+.+.+...
T Consensus 108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~---------------------- 165 (1146)
T PRK08633 108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES---------------------- 165 (1146)
T ss_pred HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 99999999999999999999999996 6899999999888877775544332222111
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCC
Q 037996 169 TIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQ 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
.....+ ....++.... ..+.+..++..+ .+....++
T Consensus 166 ~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~-----------------------------~~~~~~~~---------- 201 (1146)
T PRK08633 166 VNGNTP---SEILGRIAPA--GLVLLAVAVLGL-----------------------------IFAYRLPK---------- 201 (1146)
T ss_pred hccccc---cccccchHHH--HHHHHHHHHHHH-----------------------------HHHhcCcC----------
Confidence 000000 0000000000 000000000000 00000000
Q ss_pred CCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh-cch
Q 037996 249 PPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI-DNL 327 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 327 (535)
.+... . +..+ +............++.+++++.++...+..++.+....... +.+
T Consensus 202 ~~~~~---~-----------~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1146)
T PRK08633 202 VPAAA---P-----------EVFD-----------KKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFP 256 (1146)
T ss_pred CCCCC---c-----------cccc-----------ccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 00000 0 0000 00000000001134566778888876665554443333333 344
Q ss_pred HHHHhhcCCCCc-cchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHH
Q 037996 328 GQIGESLGYPTK-TIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASV 405 (535)
Q Consensus 328 ~~~~~~~g~~~~-~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 405 (535)
.++.+.+|++.. ..+++.+...++.+++.+++|+++||+++++ .+.++.++++++.+++... +.+.+++..+
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG------LVPLGALGLALSLFLLPTAPSLASVLVLFF 330 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc------chhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445556799888 8899999999999999999999999986542 2334444444444444433 4455666778
Q ss_pred HHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhh
Q 037996 406 IIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLY 458 (535)
Q Consensus 406 l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~ 458 (535)
++|++.+...+...+++.+..|++.+|+++|+.++...++.++ ++.+.+.+.
T Consensus 331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~-~~~~~~~l~ 382 (1146)
T PRK08633 331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL-FLALTTLFS 382 (1146)
T ss_pred HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8888888888888899999999999999999999999988855 665555443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=189.98 Aligned_cols=149 Identities=12% Similarity=0.093 Sum_probs=104.1
Q ss_pred chHH-HHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 326 NLGQ-IGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 326 ~~~~-~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
+.|. +.+++|+++.+++.+.+...+...+++++.|+++||+++|+ .+..+.+...+....+... +++...+.
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF------LMRVAAVAGVCFYAGMLMAHSPAILLGL 311 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444 44567999888888888777888899999999999997652 2233333333333222222 34444445
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.++.+++.+...+..+.+..|.+| ++++++.++.+....+|..+ +|.+.|.+.|..+
T Consensus 312 ~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~-g~~l~G~i~~~~g--------------------- 368 (393)
T PRK15011 312 QLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWII-AGSLAGIVAEIWN--------------------- 368 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHhh---------------------
Confidence 555566666666666777888887 56999999998888999976 9999999998743
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
|+..|.+..++.+++.++.+
T Consensus 369 ---~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 369 ---YHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred ---hHHHHHHHHHHHHHHHHHHH
Confidence 88888877777766655444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=190.29 Aligned_cols=323 Identities=12% Similarity=-0.050 Sum_probs=198.4
Q ss_pred cHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccch----HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 14 SKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTW----FVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 14 ~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r----~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
.|.+.+|+|.|.++++++.+.+.+... .++++|++.||+||| +.+.++.+...+ ...... ++++.+
T Consensus 27 l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~l 97 (382)
T PRK11128 27 WSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-------AFWFGA--HSFWLL 97 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-------HHHHhc--ccHHHH
Confidence 346778899999999997666666665 599999999999984 333222222111 111112 468999
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
++.|++.|++.+...+...+++.++ +++|+++.|.......+|..+.+++.+.+.+..
T Consensus 98 ~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~--------------------- 155 (382)
T PRK11128 98 FVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF--------------------- 155 (382)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 9999999999888877766666655 667888888877766677666543333222221
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCC
Q 037996 169 TIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQ 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
+++..+.... ...... .++ ....+ + .
T Consensus 156 ------------g~~~~f~~~~-------~~~~~~-------------------------~~~--~~~~~-------~-~ 181 (382)
T PRK11128 156 ------------GEQAILWILT-------AGVASM-------------------------LLG--QLLRP-------T-I 181 (382)
T ss_pred ------------ChhHHHHHHH-------HHHHHH-------------------------HHH--HHccC-------C-C
Confidence 1111221000 000000 000 00000 0 0
Q ss_pred CCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchH
Q 037996 249 PPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLG 328 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (535)
+|++ +++ + +. +....+.++.+|+|.+|...+..++.......+....+
T Consensus 182 ~~~~-----------------~~~------------~-~~--~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 229 (382)
T PRK11128 182 MPQG-----------------ESR------------Q-QE--SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSA 229 (382)
T ss_pred CCcc-----------------ccc------------c-cc--ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHH
Confidence 0000 000 0 00 00122467899999999876655543333222333334
Q ss_pred HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHH
Q 037996 329 QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVII 407 (535)
Q Consensus 329 ~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~ 407 (535)
.+.++.|.++.+.+.+.++..+...+..++.|++.||+++| ..+..+.+...++.+.+... +.+.+++..++.
T Consensus 230 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (382)
T PRK11128 230 IYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR------DLLLLSAICGVVRWGLMGSTTALPWLIVIQILH 303 (382)
T ss_pred HHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45577899988899988888888888999999999998544 44555666666665555444 455666777888
Q ss_pred HhhhcchhhHHHHHHHHhhccCcccchhhHHhhh-hhhHHHHHhHhHhHhhhhhh
Q 037996 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLA-SPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~ig~~i~~p~i~g~l~~~~ 461 (535)
|++.+...+....++.+. +++++++..+..+.. ..+|..+ +|.+.|.++|..
T Consensus 304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i-g~~i~G~l~~~~ 356 (382)
T PRK11128 304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAI-MTVLSGFLYQHL 356 (382)
T ss_pred HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 888887777777777776 556678888887643 4556555 999999999984
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=190.77 Aligned_cols=358 Identities=12% Similarity=0.069 Sum_probs=206.4
Q ss_pred HHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHH-HHhcCCCChhHHHHHHHHH
Q 037996 16 DIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWL-AVTGKIAKPAVWHMCAYIC 93 (535)
Q Consensus 16 ~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~-~~~~~~~~~~~~~l~~~r~ 93 (535)
++++++|+|..+.+++.+...+... ..++.|+++||+|||+.++.+.+...++...... .............+++.|+
T Consensus 28 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T TIGR00882 28 WLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL 107 (396)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4567899999999997666666665 5999999999999999998877666554332211 1111000012233456788
Q ss_pred HhhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhccc
Q 037996 94 IGANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRII 173 (535)
Q Consensus 94 l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 173 (535)
+.|++.+...+....+..+. .+++++..|......++|..+.+.+.+.+...+
T Consensus 108 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~-------------------------- 160 (396)
T TIGR00882 108 YLGFVFSAGAGAIEAYIEKV-SRNSNFEYGKARMFGCVGWALCASIAGILFSID-------------------------- 160 (396)
T ss_pred HHHHHhccchhhHHHHHHHh-hhhcccccchhhhhcccHHHHHHHHHhhhhccC--------------------------
Confidence 88888777766665554443 234556667665655677665443322111111
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCc
Q 037996 174 PVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEV 253 (535)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (535)
++..|.....+.+... +. .....+ ++++++
T Consensus 161 --------~~~~f~~~~~~~~~~~---~~------------------------------~~~~~~---------~~~~~~ 190 (396)
T TIGR00882 161 --------PQIVFWLGSGFALILM---LL------------------------------LMFAKP---------KAPSSA 190 (396)
T ss_pred --------chHHHHHHHHHHHHHH---HH------------------------------HHHhCC---------CCchhh
Confidence 1112211000000000 00 000000 000000
Q ss_pred ccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhh
Q 037996 254 TVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGES 333 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (535)
++ + ++ . + +++++.+..+.++.+|+|++|...+..++............+.+.++
T Consensus 191 --~~-----------~---~~-~-------~--~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~ 244 (396)
T TIGR00882 191 --TV-----------A---NA-L-------G--ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTS 244 (396)
T ss_pred --hh-----------h---cc-c-------c--cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 0 0 00000112245788899998776554443322222222223333333
Q ss_pred c----CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHH
Q 037996 334 L----GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIG 408 (535)
Q Consensus 334 ~----g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g 408 (535)
. +.+....+...++..+...++.+..|++.||+++|+ .+.++.++.++...+.... +.+.+++..++.|
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~------~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g 318 (396)
T TIGR00882 245 FFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN------ALLIAGTIMSVRIIGSSFATTALEVVILKMLHA 318 (396)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 2 444455677788888889999999999999997552 3445555555554443333 5555666677777
Q ss_pred hhhcchhhHHHHHHHHhhccCcccchhhH-HhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccc
Q 037996 409 FSFGAQLPLIFAIISELFGLKYYSTLFNC-GQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCY 487 (535)
Q Consensus 409 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (535)
++..........+..+..+++.+++..+. .+....+|+.+ +|.+.|++.|..+ |
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~-~~~l~G~l~~~~G------------------------~ 373 (396)
T TIGR00882 319 FEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF-LSTLAGNMYDSIG------------------------F 373 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH-HHHhHHHHHHhcc------------------------c
Confidence 77665555555677788888888888777 56778889966 9999999999844 8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 037996 488 RLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 488 ~~~f~~~~~~~~~~~~l~~~ 507 (535)
+.+|.+.+++.+++.++..+
T Consensus 374 ~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 374 QGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777766544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=176.17 Aligned_cols=351 Identities=15% Similarity=0.105 Sum_probs=235.7
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
+...|.+++.|+++..|.+.+-.+++.++.. +++.|.+.+|+|.|+.++.|..++++|..+++=+ ... .++..++
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA--a~~--~~y~~FL 108 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA--ASS--KSYGFFL 108 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh--hhh--hhHHHHH
Confidence 5678999999999999999988888888875 9999999999999999999999999998776422 222 4578888
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
+.-++.|.|.+...++++.+++...| ++...-+++..+++++|+.+.+.+.+.++..++. .....+.........
T Consensus 109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~----~~~~~~~~~~~~~~~ 184 (422)
T COG0738 109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA----LTMSAAQILAIKGAD 184 (422)
T ss_pred HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh----hccCHHHHHHHHHHH
Confidence 99999999999999999999999996 4677889999999999998877665544332100 000000000000000
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCC
Q 037996 169 TIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQ 248 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
-...+.+|.. +.. ++.+..+ ... .. +
T Consensus 185 ----------~~~v~~pYl~-----~~~--~lvll~v-----------------------------~~~-~~-------k 210 (422)
T COG0738 185 ----------ASSVQFPYLI-----LAG--LLVLLAV-----------------------------LIL-LS-------K 210 (422)
T ss_pred ----------HHhhhhHHHH-----HHH--HHHHHHH-----------------------------HHH-hc-------c
Confidence 0001111211 111 1100000 000 00 0
Q ss_pred CCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchH
Q 037996 249 PPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLG 328 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (535)
.|+.+ +++ +++.+ .++....+.+++|.++...+..++..+.....-.+.+
T Consensus 211 ~p~~~-----------------~~~------------~~~~~-~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~ 260 (422)
T COG0738 211 LPDLQ-----------------VAA------------PSLGA-SGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLV 260 (422)
T ss_pred CCcCC-----------------ccc------------ccccc-cccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 01100 000 00000 0111468899999999999999988888776666666
Q ss_pred HHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q 037996 329 QIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVII 407 (535)
Q Consensus 329 ~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 407 (535)
.+..+ .|.++.+++..++.+..+.++||+++.++..|+. +.+. +....+...+.++.....+.........+.
T Consensus 261 ~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~-----~~k~-Laf~a~~~ill~~~~~l~~g~v~~~~l~~i 334 (422)
T COG0738 261 SYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIK-----PEKY-LAFYALIAILLLLAVALIGGVVALYALFLI 334 (422)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----HHHH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 66665 7889999999999999999999999999988884 2333 333333333333333344445556677888
Q ss_pred HhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
|++.+..+|...+...+..| ++-..+.++..+ ..+|+.+ -|++.|++.|+.+
T Consensus 335 g~F~simfPTIfslal~~l~-~~ts~~s~~l~m-aivGGAi-iP~l~G~i~d~~g 386 (422)
T COG0738 335 GLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM-AIVGGAI-IPPLQGVIADMFG 386 (422)
T ss_pred HHHhHHHHHHHHHHHHhccC-ccccccceeeee-heecchH-HHHHHHHHHHhhh
Confidence 99999999999999999998 555555555555 4566656 6999999999854
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=186.92 Aligned_cols=415 Identities=15% Similarity=0.074 Sum_probs=227.3
Q ss_pred cccHHHHHHcCCChhhhHHH-HHhhhhccccccchhhhccc-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 12 TYSKDIKASLGYDQSTLNLL-GFFKDLGANVGVPSGLLGEI-TPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
....++++++|+++++.+|+ +.+..+.+...+++|+++|| +|||++++++.+++.++++.++++ . .....++
T Consensus 36 ~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~----~~~~ll~ 109 (489)
T PRK10207 36 ILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--L----LKPDLIF 109 (489)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--c----cchhHHH
Confidence 44566788999999999995 45444555668899999999 999999999999999998876543 1 1123355
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-C--CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-E--SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~--~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
+.|+++|+|.|...+....++.|+|| + +|+++.++...+.++|+.+.+.+...+.+...|++.+.+..+.....++.
T Consensus 110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~ 189 (489)
T PRK10207 110 IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLV 189 (489)
T ss_pred HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999996 4 35778888888888888765555555544433444444433223333332
Q ss_pred HhhhcccCCCC--CCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 167 VYTIRIIPVVQ--HTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 167 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
....+...++. ...+.+.+......................+ ..+..........++ ....+..++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i----~~~~f~~~~~---- 258 (489)
T PRK10207 190 YFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH---NVEVANLVLIVLSIV----VTIIFFREAF---- 258 (489)
T ss_pred HHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHH----HHHHHHHHHh----
Confidence 32323221110 0001111111111111111111111111111 001000001111111 1111111100
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHH--HHhhhhchhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVA--TFGGLGSSLT 322 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~ 322 (535)
+. + +.+|+|.+....+. ....+.....
T Consensus 259 -------------------------------------------~~----~----~~~r~r~~~~~~l~~~~~~f~~~~~q 287 (489)
T PRK10207 259 -------------------------------------------KL----D----KTGRNKMFVAFVLMLEAVVFYILYAQ 287 (489)
T ss_pred -------------------------------------------cC----C----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 23355544433221 2222222222
Q ss_pred hhcchHHHHhh-cCCCC----ccchhhHHHHHHhhHHHHHHhhhhchhhhhccC-CCchHHHHHHHHHHHHHHHHH----
Q 037996 323 AIDNLGQIGES-LGYPT----KTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYK-MPRPLMLTLVLVLSCIGLLLI---- 392 (535)
Q Consensus 323 ~~~~~~~~~~~-~g~~~----~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~-~~r~~~~~~~~~~~~i~~~~~---- 392 (535)
.....+.+.++ .+.+. -..+.+.++..+...+..++.+++.||+++|+. .+...-+.++.++.+++++.+
T Consensus 288 ~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~ 367 (489)
T PRK10207 288 MPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAG 367 (489)
T ss_pred cccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444332 22111 122344455556677788889999999987752 112222345555555554322
Q ss_pred ---hcc----CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhH
Q 037996 393 ---AFP----FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKE 465 (535)
Q Consensus 393 ---~~~----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~ 465 (535)
... +.++++...++.|++.+...+...+.+.+..|++.+|.++|+.++..++|+.+ +..+.+..........
T Consensus 368 ~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l-g~~l~~~~~~~~~~~~ 446 (489)
T PRK10207 368 MWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL-GGYVATFTAVPDNITD 446 (489)
T ss_pred HhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccccc
Confidence 111 23456667788899999999999999999999999999999999999999966 7666544321100000
Q ss_pred hhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 466 LAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
+. .....|...|...++..+++.++.++..
T Consensus 447 ----------~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 447 ----------PL----ETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred ----------ch----hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011266777777776666655554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=189.20 Aligned_cols=347 Identities=11% Similarity=0.013 Sum_probs=203.6
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhhccccccchhhhcccc-----cchH-HHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEIT-----PTWF-VLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
..|.+-++.|+|.+|++++...... .++.+++|+++||+ |||| .+.++.+...++...+++ .. +..+++
T Consensus 21 ~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~--~~--~~~~~~ 95 (402)
T PRK11902 21 TLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF--CP--PHAALW 95 (402)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh--cC--ccchHH
Confidence 4566677889999999997665554 45699999999999 8876 677777777666554422 21 113477
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.++...++.+...+...++..+++.|++| |||+++.++...++++|..+.+.+...+.+..
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~------------------ 157 (402)
T PRK11902 96 PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV------------------ 157 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc------------------
Confidence 78888888888888888999999999997 56999999998888787766654333222210
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
.+|+..+.....+. +.. .+. ....+
T Consensus 158 --------------~gw~~~f~i~a~~~-------l~~-------------------------~l~-~~~~~-------- 182 (402)
T PRK11902 158 --------------LGWGNTYLLMAGLM-------LAG-------------------------ALT-TLWAP-------- 182 (402)
T ss_pred --------------cCHHHHHHHHHHHH-------HHH-------------------------HHH-HHhcC--------
Confidence 01222222111000 000 000 00000
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhc-hhhhh
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGS-SLTAI 324 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 324 (535)
+|++++ + ++ ++.++......++.+|+|.++...+..++.... .....
T Consensus 183 ---e~~~~~--~------------------~~---------~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~ 230 (402)
T PRK11902 183 ---EPEVPA--R------------------PP---------RSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGS 230 (402)
T ss_pred ---CCcccc--c------------------cc---------chhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHH
Confidence 000000 0 00 000000112456788999888766554433222 11222
Q ss_pred cchHHHHhhcCCCCccchhhHHHHH-HhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHH---HHHHhc-cC-cc
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVS-IWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIG---LLLIAF-PF-PG 398 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~-i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~---~~~~~~-~~-~~ 398 (535)
...+++.++.|+++.+.+++....+ ++..+|.+++|++.||+++|+ .+..+.+...+. ..++.. ++ .+
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~------~l~~~~~~~~l~~l~~~~~~~~~~~~~ 304 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR------SLMLFGVLQAVSNLGYWVLAVTPKHLW 304 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3345565668999888888876654 468899999999999997552 222333222222 222223 22 23
Q ss_pred hHHHHHHH----HHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCC
Q 037996 399 SVYVASVI----IGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRS 474 (535)
Q Consensus 399 ~~~~~~~l----~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~ 474 (535)
.++....+ .|++.+...+....++.+.+|. +.++..+....++..+ ++.+.|.+.|+.+
T Consensus 305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~-~~~~~G~l~~~~G------------ 367 (402)
T PRK11902 305 TMALAIGIENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVY-VGPTSGYLVEAYG------------ 367 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHhC------------
Confidence 33333333 3444444455555556655554 4456656666777765 4568999999855
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHHH
Q 037996 475 DVKELICIGVKCYRLPFIILACVTCFGALV 504 (535)
Q Consensus 475 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l 504 (535)
|+..|.+.+++++++.++
T Consensus 368 ------------~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 368 ------------WPGFYLMTVVIALPGLAL 385 (402)
T ss_pred ------------hHHHHHHHHHHHHHHHHH
Confidence 888888887777666443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=218.13 Aligned_cols=319 Identities=11% Similarity=-0.013 Sum_probs=197.7
Q ss_pred hHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcChhhHhhhh
Q 037996 28 LNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGA 106 (535)
Q Consensus 28 ~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~ 106 (535)
.++..+.+.+..+ +++++|+++||+|||+++........+...+..+++ .. ++++++++.|+++|++.++..++.
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~--~~--~s~~~l~~~~~l~gi~~a~~~p~~ 129 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF--HL--NSVPLLFAALFLMGIHSALFGPIK 129 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH--HH--hhHHHHHHHHHHHHHHHHhhchHH
Confidence 4556666666664 599999999999999976332211111111111111 11 468999999999999999999999
Q ss_pred hhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhH
Q 037996 107 LVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHEAKV 185 (535)
Q Consensus 107 ~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (535)
.+++.+++| ++|++++|+..++.++|..+.+.+.+.+.....++..+....+..+..++
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 189 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWL-------------------- 189 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH--------------------
Confidence 999999996 67999999999998888877654444333322211111110000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCcccCCcCccCCCC
Q 037996 186 FYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKK 265 (535)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (535)
+....++ .++++.
T Consensus 190 ----------------------------------------------~~~~~~~---------~~~~~~------------ 202 (1140)
T PRK06814 190 ----------------------------------------------ASLFIPK---------TGNAAP------------ 202 (1140)
T ss_pred ----------------------------------------------HHhhCCC---------CCCCCC------------
Confidence 0000000 000000
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHH-hhcCCCCccchhh
Q 037996 266 EPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIG-ESLGYPTKTIKSF 344 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~a~~~ 344 (535)
.. +......+.....++.+.+++.+|...+..++.......+..+.|.+. +.+|.++..++++
T Consensus 203 ------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~ 266 (1140)
T PRK06814 203 ------DL----------KIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLF 266 (1140)
T ss_pred ------CC----------eeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHH
Confidence 00 000000000011356677888888887766655444333333444444 4569999999999
Q ss_pred HHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc---------------------cCcchHHHH
Q 037996 345 VSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF---------------------PFPGSVYVA 403 (535)
Q Consensus 345 ~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---------------------~~~~~~~~~ 403 (535)
.+...++..+|.++.|+++|+..+++.. ..+.++.+++.+.+.. .+.+.+++.
T Consensus 267 ~~~~~~g~~ig~~~~g~l~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1140)
T PRK06814 267 LAVFSVGVAVGSFLASKLSEGRITLLYV------PIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILID 340 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceeeeee------hHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHH
Confidence 9999999999999999999876544221 1111222121111111 234455667
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
.+++|++.+...+...+++++..|++.+|+++|+.++...++..+ ++.+.|.+.+.
T Consensus 341 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i-g~~~~g~l~~~ 396 (1140)
T PRK06814 341 LFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVA-GTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 778899888888888999999999999999999999999998866 88888888754
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-23 Score=199.50 Aligned_cols=350 Identities=14% Similarity=0.055 Sum_probs=206.4
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
|+-....+.++++||++++..+++++.+.+.. ++.|++|+++|||.||.++.+|..++.++++..+++ ..||
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-------~~Fw 122 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-------NHFW 122 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-------HHHH
Confidence 34445678899999999999999876666666 569999999999999999999999999997776554 5699
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
++.++|.+.|+|++...+.+..+++|.||+ +|++++++.+.+...|+.+.. +.+..+..
T Consensus 123 q~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~-vvgs~va~------------------- 182 (493)
T KOG1330|consen 123 QVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGY-VVGSVVAS------------------- 182 (493)
T ss_pred HHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeE-Eeeeeecc-------------------
Confidence 999999999999999999999999999985 899999998877777765432 22211111
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
....|++.++.-.+++++.++ + ..++.++
T Consensus 183 ------------~~~~Wr~af~~~avl~vi~~~------------------------------L--~~~f~~e------- 211 (493)
T KOG1330|consen 183 ------------LTFWWRWAFRGSAVLGVIVGL------------------------------L--VFLFVRE------- 211 (493)
T ss_pred ------------CccceEEEEEeehHHHHHHHH------------------------------H--HHhhccC-------
Confidence 000122233211111110000 0 0011111
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhh-hhchhhhh
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGG-LGSSLTAI 324 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 324 (535)
|++- .+ + +.+. +++...+.....+..+...|++.+....+.+... ...+ .+.
T Consensus 212 ----P~rg--a~-----~-----~~~~----------~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~G-s~s 264 (493)
T KOG1330|consen 212 ----PERG--AR-----D-----EVDG----------ENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIG-SLS 264 (493)
T ss_pred ----cccc--cc-----c-----cccc----------CCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhcc-ccc
Confidence 1100 00 0 0000 0000111111122334455555554333332211 1122 223
Q ss_pred cchHH----HHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCC-CchHH----HHHHHHHHHHHHHHHhcc
Q 037996 325 DNLGQ----IGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKM-PRPLM----LTLVLVLSCIGLLLIAFP 395 (535)
Q Consensus 325 ~~~~~----~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~-~r~~~----~~~~~~~~~i~~~~~~~~ 395 (535)
|+.|. ...-.|.+..+..++..+...++.+|.+.+|.++||+.+++.- .|..+ ...+..+++..+.+....
T Consensus 265 ww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~ 344 (493)
T KOG1330|consen 265 WWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF 344 (493)
T ss_pred hhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh
Confidence 33332 2223466777777778899999999999999999997654321 11111 112222233333332222
Q ss_pred CcchHH--HHHHHHHhhh-cchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 396 FPGSVY--VASVIIGFSF-GAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 396 ~~~~~~--~~~~l~g~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
.....+ +.++++|... -...++..-+..++.|+++|.+++++......+.+-.=+|++.|.+.|+.-
T Consensus 345 ~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 345 TSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLR 414 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhh
Confidence 222233 3334444432 223445556778889999999999999877755544426669999988743
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=189.59 Aligned_cols=325 Identities=10% Similarity=0.014 Sum_probs=192.4
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhccccccchhhhcccc-----cchHHH-HHHHHHHHHHHHHHHHHHhcCCCChh
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEIT-----PTWFVL-LVGSGMNFAGYLMIWLAVTGKIAKPA 84 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~ 84 (535)
+...|.+.+|+|+|.+|+++.+....... +.+++|++.||+ ||||.+ +.+.++..+..+.++ +. .+..+
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~--~~--~~~~~ 82 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS--FL--VPSTD 82 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH--cC--Ccchh
Confidence 45678999999999999999765543333 489999999998 899975 555656555533332 11 11234
Q ss_pred HHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 037996 85 VWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAIS 163 (535)
Q Consensus 85 ~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 163 (535)
.+.+....++.+.+.+...++..+++.|++| |+|+++.|+...+..+|..+.+.+...+.....
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g--------------- 147 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF--------------- 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------------
Confidence 6667777888888888888888999999996 689999999988888877665433222111100
Q ss_pred HHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhh
Q 037996 164 VIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIW 243 (535)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (535)
.+...+.+|+..+..... ..+.. ........+
T Consensus 148 ----------~~~~~~~~wr~~f~i~ai-------~~l~~--------------------------~~~~~~~~~----- 179 (356)
T TIGR00901 148 ----------ANTGLITLWGYIFFWTAL-------LILPG--------------------------LLVTLFLAK----- 179 (356)
T ss_pred ----------cccccccccHHHHHHHHH-------HHHHH--------------------------HHHHHHhcc-----
Confidence 000000112222221100 00000 000000000
Q ss_pred hcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHH---HHHHHHHHHhhhhch
Q 037996 244 NLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSID---MLILFVATFGGLGSS 320 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~ 320 (535)
++++. + ++ + +++++......++.+++|. ++...+..++.....
T Consensus 180 -----e~~~~---~-------------~~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (356)
T TIGR00901 180 -----EPQED---A-------------SV----P---------KPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGD 225 (356)
T ss_pred -----CCCcc---c-------------cc----c---------hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 00000 0 00 0 0000000113455666664 555554444333333
Q ss_pred hhhhcchHHHHhhcCCCCccchhhHHHHH-HhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-----
Q 037996 321 LTAIDNLGQIGESLGYPTKTIKSFVSLVS-IWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF----- 394 (535)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~-i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----- 394 (535)
.....+.+++.++.|+++.+.+.+....+ +...+|.+++|++.||+++|+ .+..+.++..+...++..
T Consensus 226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~------~l~~~~~~~~~~~~~~~~~~~~~ 299 (356)
T TIGR00901 226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY------ALLLFGIVQALTNAGFVWLASNG 299 (356)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344455555668999988888877655 578899999999999997553 233344444443332221
Q ss_pred -------cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhh
Q 037996 395 -------PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASP 443 (535)
Q Consensus 395 -------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 443 (535)
++.+.+..+.++.+++.+...+...++..|.+|++++|+.+|+.+...+
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 300 HHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 1123344556677888888899999999999999999999999877654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=177.84 Aligned_cols=407 Identities=13% Similarity=0.078 Sum_probs=240.9
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
+...|.+...++.+..|.+.++...++++.. +..+|.++|++|||+...+......+.-. .++.. +|+..++
T Consensus 98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~-----is~~s--pnf~~L~ 170 (528)
T KOG0253|consen 98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGV-----ISGAS--PNFASLC 170 (528)
T ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHH-----hhcCC--CCeehhh
Confidence 4566788888999999999999999999976 99999999999999998777766544422 22333 6799999
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHh
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVY 168 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 168 (535)
++|.+.|.|.|. +|...++-.|.-|. +|++-+-+. ..+.+|......+....+.+-.|+|++++..+|+.......+
T Consensus 171 ~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~ 248 (528)
T KOG0253|consen 171 VFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLV 248 (528)
T ss_pred HHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHh
Confidence 999999999999 67777777776684 788877666 778888888787777777777788888888899888777666
Q ss_pred hhcccCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 169 TIRIIPVVQH-TSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
.+++.|...- +.++.++.. ..++.++.+.++
T Consensus 249 w~~ESpRf~~~~G~~~kAle------------------------------------------------tL~kiArmNg~q 280 (528)
T KOG0253|consen 249 WVYESPRFYLAKGDDYKALE------------------------------------------------TLHKIARMNGKQ 280 (528)
T ss_pred hcccCcchhhhcCChHHHHH------------------------------------------------HHHHHHHhcCCC
Confidence 6554443211 111111111 011112222222
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc--
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID-- 325 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 325 (535)
-++.....+. .++ +|+++.+-++.+.+..++. ..+.....+..-..++-..|..++.....+.....++.
T Consensus 281 lplgvl~~s~---~~~----~e~e~~~~~~~~~~a~ke~-rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttel 352 (528)
T KOG0253|consen 281 LPLGVLESSA---IDR----QEQEESDLDDSKSSAAKEV-RGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTEL 352 (528)
T ss_pred CCcceeeeeh---hhh----hhhhhhchhhhhhcccccc-ccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1111111000 000 0110000000000000000 00000001111111222334444433222111110000
Q ss_pred ------------chHHHHhh-cCCCCccchh-h-HHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHH
Q 037996 326 ------------NLGQIGES-LGYPTKTIKS-F-VSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLL 390 (535)
Q Consensus 326 ------------~~~~~~~~-~g~~~~~a~~-~-~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~ 390 (535)
..|+..+. ..-......- . .-+..+..+-|.++.+++.||+||| ..++...++++++++
T Consensus 353 fqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK------kTMal~l~~f~iflf 426 (528)
T KOG0253|consen 353 FQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK------KTMALSLILFGIFLF 426 (528)
T ss_pred HhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch------hHHHHHHHHHHHHHH
Confidence 01111111 1111111111 1 2345667788999999999999655 567777777777776
Q ss_pred HHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhh
Q 037996 391 LIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKK 469 (535)
Q Consensus 391 ~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~ 469 (535)
++... +.-..-+..+..-++..+.+...+.+..|++|++.|+++.|.....+.+|+++ .|.++ ...+..
T Consensus 427 ll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~-~p~iA-~~~e~s-------- 496 (528)
T KOG0253|consen 427 LLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIF-SPVIA-MRAELS-------- 496 (528)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhh-hhHHH-HHhccc--------
Confidence 66544 33333333344445555667777889999999999999999999999999965 98887 333331
Q ss_pred cCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 037996 470 GMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREF 515 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~ 515 (535)
-..+..+.+.+++++.+.+.++..|+|.+
T Consensus 497 -----------------~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 497 -----------------TSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred -----------------eeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 34455677788888888888888888763
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-19 Score=183.27 Aligned_cols=433 Identities=13% Similarity=0.071 Sum_probs=249.0
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
+...+.+.+|+|- .....|+++...++... .++.|.++|.||||.+++++.++..+|.++.+.+ +|...++
T Consensus 64 a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------~~~~~~i 135 (599)
T PF06609_consen 64 ASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------QNMNTFI 135 (599)
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------CcHHHHH
Confidence 4455788899984 57788877777777754 8999999999999999999999999998876433 6788999
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHH
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN-DSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~ 167 (535)
..-.+.|+|.|..... ...++|..| |.|+...++.....-......+.+...+..+ +|+|.+++..+...+..++..
T Consensus 136 ag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 136 AGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999888654 445789998 5687766654433312221223333334434 455544444443333333333
Q ss_pred hhhcccCCCC-C--Ccchhh---HHHHHHHHHHHHH-HHHHHHHHhhhc--ccCChhhhhhhhhHHHHHhhhhhhHhhhH
Q 037996 168 YTIRIIPVVQ-H--TSHEAK---VFYHFLYASIVLA-LFLMVMTILEKV--MSFPREAYAASATGCIVLLFVPLAIAIRE 238 (535)
Q Consensus 168 ~~~~~~~~~~-~--~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (535)
++.+++++.+ + +...++ +++....+..+.+ ..+++....... .+|.+....+..++-.+++..+..+...
T Consensus 215 ~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~- 293 (599)
T PF06609_consen 215 FFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWF- 293 (599)
T ss_pred HHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhh-
Confidence 4444333221 1 111122 2332222222222 222222111221 2233333222222222222222222110
Q ss_pred HHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhh-HHHHHHHHHHHhhh
Q 037996 239 ELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLS-IDMLILFVATFGGL 317 (535)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 317 (535)
..+ +++.-..+++|+ |.+....+..++..
T Consensus 294 ------------------------------------------------~~~--~~Pl~P~~Lf~~~r~~~~~lvi~fi~G 323 (599)
T PF06609_consen 294 ------------------------------------------------GAP--KDPLFPHRLFKDRRGFAALLVISFISG 323 (599)
T ss_pred ------------------------------------------------ccC--CCCcCCHHHhccchHHHHHHHHHHHHH
Confidence 000 012223567776 55666555544433
Q ss_pred hchhhhh-cchHHHHhhcCCCC---ccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh
Q 037996 318 GSSLTAI-DNLGQIGESLGYPT---KTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA 393 (535)
Q Consensus 318 ~~~~~~~-~~~~~~~~~~g~~~---~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~ 393 (535)
...+... .++......++-|+ ...++.....+++..+|.++.|.+..+++|- |+.+..+.+++..++.++.
T Consensus 324 ~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~-----Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 324 MNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI-----KWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred HHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHH
Confidence 3333333 33333333344443 2567777888888999999999998877532 3555556666655444443
Q ss_pred c--c-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhh---
Q 037996 394 F--P-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELA--- 467 (535)
Q Consensus 394 ~--~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~--- 467 (535)
. + +....+...++.|++.|....+....++-..|+++.|++.|+....+.+|+.+ |..+...++...-.+..+
T Consensus 399 ~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI-g~aIy~~I~~n~~~~~l~~~v 477 (599)
T PF06609_consen 399 AVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI-GYAIYNAIFTNKLPKELPKYV 477 (599)
T ss_pred HccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhhhhHhHHHHH
Confidence 2 2 44456677778888888877777777777789999999999999999999977 777776655432111111
Q ss_pred -----hhcCCCC-------------------Ccccc------------cccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 468 -----KKGMNRS-------------------DVKEL------------ICIGVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 468 -----~~~~~~~-------------------~~~~~------------~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
..|.+++ .++.. ..+ ..+|++.|+....+.+++++.++++.-
T Consensus 478 ~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aY-a~ay~~V~~~siaFG~vaiiaa~fl~d 555 (599)
T PF06609_consen 478 APAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAY-AHAYRYVYYSSIAFGVVAIIAALFLGD 555 (599)
T ss_pred HHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0122110 00000 011 346899999988898998888877753
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=191.46 Aligned_cols=343 Identities=12% Similarity=0.024 Sum_probs=203.7
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhccc----ccchH-HHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEI----TPTWF-VLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr----~G~r~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.+.+.+++|++..+++++.+...+... ..|+.|+++|| +|||| .++++.....++.++++... .........
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~-~~~~~~~~~ 100 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP-DFSATGKLV 100 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC-CCCcchHHH
Confidence 4566788999999999997666666654 59999999998 67744 66677777777755543221 111112245
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhc-C-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNF-P-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISV 164 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~f-p-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 164 (535)
.+++.+++.+++.+...++..++..+.. + ++|+++.++...+..+|+.+.+.+.. |+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~-----------------~l~~~- 162 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVL-----------------PLVSY- 162 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-
Confidence 6667888888888887776677777776 3 67999999877666566655432211 11110
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+ . ... ...+++..+.....+ .++... ......+|
T Consensus 163 ----~-~--~~~-~~~g~~~~~~i~~~l-------~~~~~~-------------------------~~~~~~~e------ 196 (437)
T TIGR00792 163 ----F-G--GGD-DKFGWFMFALVLALI-------GVVSLI-------------------------ICFFGTKE------ 196 (437)
T ss_pred ----h-C--CCc-ccccHHHHHHHHHHH-------HHHHHH-------------------------HHHcCCEe------
Confidence 0 0 000 001122122111000 000000 00000010
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
++++ .+++ ++++.......++.+++|+++...+..++.........
T Consensus 197 ----~~~~-----------------~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (437)
T TIGR00792 197 ----RYSE-----------------IPKN-------------IEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKN 242 (437)
T ss_pred ----cCCC-----------------CCcc-------------cccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence 0000 0000 00000011234677889999887766555444333333
Q ss_pred cchHHHHhhc-CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc--CcchHH
Q 037996 325 DNLGQIGESL-GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP--FPGSVY 401 (535)
Q Consensus 325 ~~~~~~~~~~-g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--~~~~~~ 401 (535)
...+++.+.. + ++.+.+.+..+..++.+++.+++++++||+++| ..+..+.++..++.+.+... +.+..+
T Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (437)
T TIGR00792 243 GVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK------ILFAGGILLMVLGYLIFFFAGSNLPLIL 315 (437)
T ss_pred chhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHcchhHHHHH
Confidence 3344443332 4 345566777778899999999999999999654 33445555555554444332 334455
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhc-------cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFG-------LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
+..++.|++.+...+...++++|..+ ++..|..+|+.+....++..+ ++.+.|.+.+..+
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~l-g~~i~g~ll~~~G 382 (437)
T TIGR00792 316 VLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQAL-AGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 56677788888888888888888754 567899999999999999976 9999999988743
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=185.87 Aligned_cols=404 Identities=15% Similarity=0.031 Sum_probs=221.6
Q ss_pred hhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcChhhHh
Q 037996 25 QSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFAN 103 (535)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~ 103 (535)
+.-.+.+....++|.++ ++++|++.||+|||+++...++++.++++++++......+..-.+.++.+|++.|+|.|+-|
T Consensus 83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence 34455588888999987 99999999999999999999999999988665443333332235678899999999999999
Q ss_pred hhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcch
Q 037996 104 TGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHE 182 (535)
Q Consensus 104 ~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 182 (535)
|...++.+|... ++||.-.+.+.+..+.|-...+ ++... +...+-.+.+.+.+...-
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~---------------------ivt~I-v~~~fe~~~~~~~~~~~l 220 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGG---------------------IVALI-VSAIFEKIFNGPSTYPHL 220 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHhhcc---------------------HHHHH-HHHHHhccCCCCCCchHH
Confidence 999999999886 5799999987776666543322 11111 111111211111110000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhh--hcCCCCCCCcccCCcCc
Q 037996 183 AKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIW--NLKKQPPSEVTVEKPAE 260 (535)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 260 (535)
+..+.....+.++.++.. +...+..++..+.. .++ +++.. .
T Consensus 221 d~vWRl~~glg~vpa~~~-----------------------------ly~Rl~M~Et~~Y~al~~~--~~~~a------~ 263 (538)
T KOG0252|consen 221 DGVWRIIFGLGAVPALLV-----------------------------LYFRLKMPETARYTALVSK--KLKQA------A 263 (538)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------------------HHhhhcCCcchhHHHHhhc--CHhhh------h
Confidence 111110001100000000 00000000000000 000 00000 0
Q ss_pred cCCCCCC-CCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHH---HHHHhhhhchhhhhcchHHHHhhcCC
Q 037996 261 IEPKKEP-LPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILF---VATFGGLGSSLTAIDNLGQIGESLGY 336 (535)
Q Consensus 261 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~ 336 (535)
.|.++.. .+-+++++. +....+.+.....+.+.+..+....+. ...|..-...+...-+...+.+..|+
T Consensus 264 ~d~~k~~~~~~~~~~~~-------~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~ 336 (538)
T KOG0252|consen 264 GDMKKVLSVDIEAESTA-------ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGV 336 (538)
T ss_pred hccccccccccchhhcc-------ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhcc
Confidence 0000000 000000000 000111111111233333333111121 12222222222333345566677777
Q ss_pred CCccchh--------hHHHHH-HhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-C----cchHHH
Q 037996 337 PTKTIKS--------FVSLVS-IWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-F----PGSVYV 402 (535)
Q Consensus 337 ~~~~a~~--------~~~~~~-i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~----~~~~~~ 402 (535)
.+.+... ...+.. .+...|-.+...++|++| |++....+.+++.+..+.++.+ + .....+
T Consensus 337 ~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iG------Rk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v 410 (538)
T KOG0252|consen 337 IPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIG------RKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVV 410 (538)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhh------hHHHHHhhHHHHHHHHHHHcCCcccccccCceee
Confidence 6655443 112222 333447777888999995 5577788888888888877765 2 233444
Q ss_pred HHHHHHhhhc-chhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 403 ASVIIGFSFG-AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 403 ~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..+..++.. +.-..+..+.+|.||.+.|++.+|+....+-+|+++ +...+.++.++... +
T Consensus 411 ~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAiv-g~~~F~~~t~~~yp---~-------------- 472 (538)
T KOG0252|consen 411 LYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIV-GAFGFLYLTDHNYP---P-------------- 472 (538)
T ss_pred hHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHH-HHHHhhHhhhccCC---c--------------
Confidence 4444443322 222344567899999999999999999999999966 88888777775311 0
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIY 521 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 521 (535)
..+++.+|++++++++++.+..+++. |++++..++++
T Consensus 473 --~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei~ 509 (538)
T KOG0252|consen 473 --NIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEIS 509 (538)
T ss_pred --cccchHHHHHHHHHHHHhHheeEEee-cccccCHHHhc
Confidence 23489999999999999887776666 88887665553
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=179.77 Aligned_cols=342 Identities=18% Similarity=0.202 Sum_probs=218.4
Q ss_pred HHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037996 19 ASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGAN 97 (535)
Q Consensus 19 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi 97 (535)
++.+-.++++|++.....+..+ ..++.|.+.||+|+|..+++|.+++...++++++. .+++.+++.|.+||+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGV 171 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhh
Confidence 4566778899997666666665 59999999999999999999999999999998765 678999999999999
Q ss_pred ChhhHhhhhhhhHhhhcCC--CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccCC
Q 037996 98 SQNFANTGALVTCVKNFPE--SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPV 175 (535)
Q Consensus 98 g~g~~~~~~~~~~~~~fp~--~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 175 (535)
|.++..++..+++++.||+ +||+++|+..++.++|-.+.++..+.+.+.
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~----------------------------- 222 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF----------------------------- 222 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-----------------------------
Confidence 9999999999999999974 589999999999999886654332222211
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCccc
Q 037996 176 VQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTV 255 (535)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (535)
.+.+-+|..+..++ ++. .. +...+. +|.+.++
T Consensus 223 ----~Gk~aPFlVL~~v~------Lld-~~--------------------------L~l~vi-----------~p~~~~~ 254 (464)
T KOG3764|consen 223 ----AGKSAPFLVLAIVL------LLD-GA--------------------------LQLLVI-----------EPTEMDP 254 (464)
T ss_pred ----cCCcCcHHHHHHHH------HHH-HH--------------------------HHHhee-----------CccccCc
Confidence 01112232111110 000 00 000011 1111000
Q ss_pred CCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHH-HHhhhhchhhhhcchHH-HHhh
Q 037996 256 EKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVA-TFGGLGSSLTAIDNLGQ-IGES 333 (535)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 333 (535)
+ ...++...++++++|..+..... .+++.+..+ .-..++. ..++
T Consensus 255 -------------------------------~--~~~~~~~~~~Ll~dP~I~~~agai~~~n~~laf-LePtlslwm~e~ 300 (464)
T KOG3764|consen 255 -------------------------------D--STEQGTPMWSLLMDPYILLIAGAITFSNSSLAF-LEPTLSLWMLET 300 (464)
T ss_pred -------------------------------c--ccccCccHHHHHhCchHhhhhcchhhccchHHH-hCcccHHHHHHh
Confidence 0 00113346888899988776543 223332222 2233333 3445
Q ss_pred cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHH-HHHHHHHHHHHHhcc-CcchHHHHHHHHHhhh
Q 037996 334 LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTL-VLVLSCIGLLLIAFP-FPGSVYVASVIIGFSF 411 (535)
Q Consensus 334 ~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~-~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~ 411 (535)
...+.-+.++.+-...+...+|..+.|.+.||+++. | |.+.. +.+..........+. +...+++-.+..+++.
T Consensus 301 m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~----~-wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i 375 (464)
T KOG3764|consen 301 MFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL----R-WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGI 375 (464)
T ss_pred ccCCCcceeeeecccccchhccCchHHHHHHhcCch----h-HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHH
Confidence 564444788888888899999999999999999642 3 44433 333333332223333 3334555455555544
Q ss_pred cchhhHH---HHHHHHhhccC---cccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccc
Q 037996 412 GAQLPLI---FAIISELFGLK---YYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVK 485 (535)
Q Consensus 412 g~~~~~~---~~~~~~~~~~~---~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (535)
+..-+.. ..+..|.--.+ .+|..+++......++.++ ||.++|.+.+..+
T Consensus 376 ~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~-GP~~gg~iv~~iG----------------------- 431 (464)
T KOG3764|consen 376 GLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAI-GPTFGGSLVEAIG----------------------- 431 (464)
T ss_pred HHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhc-cccccchheeehh-----------------------
Confidence 4333222 22333332233 7889999999999999977 9999999998865
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 037996 486 CYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 486 ~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
|.+...+.++..++-.-++..+
T Consensus 432 -F~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 432 -FEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776655544433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-19 Score=183.56 Aligned_cols=401 Identities=14% Similarity=0.063 Sum_probs=221.9
Q ss_pred HHHHHH--cCCChhhhHHHHHhhhhcc-ccccchhhhccc-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037996 15 KDIKAS--LGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEI-TPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCA 90 (535)
Q Consensus 15 ~~l~~~--~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 90 (535)
.+++++ +|++..+.+++.+.+.... +..+++|+++|| +|||+++.++.++..++.++++++ ++++.+++
T Consensus 35 ~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-------~~~~~~~~ 107 (475)
T TIGR00924 35 VYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-------IYPDLIFY 107 (475)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-------ccHhHHHH
Confidence 345565 8999999999655555555 559999999999 899999999999999997765432 34677888
Q ss_pred HHHHhhcChhhHhhhhhhhHhhhcC-CC---CcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 91 YICIGANSQNFANTGALVTCVKNFP-ES---RGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 91 ~r~l~Gig~g~~~~~~~~~~~~~fp-~~---rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
.|++.|+|.|+..+....++++++| ++ |+++.++...+..+|+.+.+.+.+.+.+...+++.+..+.+..+..++.
T Consensus 108 ~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 108 GLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 9999999999998989999999996 33 8889999888888888776665555544322333222222222222222
Q ss_pred Hhhhccc-CCCCCCc----chhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHh
Q 037996 167 VYTIRII-PVVQHTS----HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELA 241 (535)
Q Consensus 167 ~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
.+..+.. ++.+.+. .+.+...... . .+...+. + .....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~---------------------~---------~~~~~-- 230 (475)
T TIGR00924 188 FFAGRHMLRDIGSVPDPLSGQGKTYGKLL-L----ALLAALA---------------------L---------VFFCA-- 230 (475)
T ss_pred HHHcccccccCCCCCCCcchhhhhhHHHH-H----HHHHHHH---------------------H---------HHHHH--
Confidence 2221111 1110000 0000000000 0 0000000 0 00000
Q ss_pred hhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCC-c---cccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhh
Q 037996 242 IWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGST-K---SCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGL 317 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 317 (535)
+ ...+.. . .+...... . -.......++ ..+..+..|.+.+..+++...+.+
T Consensus 231 -~-----~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~~ 285 (475)
T TIGR00924 231 -W-----LMHHVV--I-------------ANILLMTVTLAVIIFFFRLAFKP----RLDAVARNKMYAYIVLFLEAVVFW 285 (475)
T ss_pred -H-----HHhccH--H-------------HHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHhHHHHHHHHHHHHHHHH
Confidence 0 000000 0 00000000 0 0000000000 011111112233333333333333
Q ss_pred hchhhhhcchHHHHhh-cCCCCcc----chhhHHHHHHhhHHHHHHhhhhchhhhhccC-CCchHHHHHHHHHHHHHHHH
Q 037996 318 GSSLTAIDNLGQIGES-LGYPTKT----IKSFVSLVSIWNYFGRVFAGFVSEGLLAKYK-MPRPLMLTLVLVLSCIGLLL 391 (535)
Q Consensus 318 ~~~~~~~~~~~~~~~~-~g~~~~~----a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~-~~r~~~~~~~~~~~~i~~~~ 391 (535)
..........+.+.++ .+.+... .+++.++..+.-++..++..++..|+.+|.. .....-+.++.++.++++..
T Consensus 286 ~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~ 365 (475)
T TIGR00924 286 VLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLT 365 (475)
T ss_pred HHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3322223333333222 2222111 5566777777666666665555455555421 12222246677777777665
Q ss_pred Hhc----------cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 392 IAF----------PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 392 ~~~----------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
+.. .+.++++...++.+++.....+...+++.+..|++.||+.+|+......+|..+ ++.+.....+..
T Consensus 366 ~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l-~~~~~~~~~~~~ 444 (475)
T TIGR00924 366 FAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL-GGYLATFGAVPQ 444 (475)
T ss_pred HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccc
Confidence 542 245677888899999999999999999999999999999999999999998876 777776555442
Q ss_pred hhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 462 AVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
++...|...+++.++..++.+++.
T Consensus 445 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 445 ------------------------GVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred ------------------------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 256666666666666555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=192.25 Aligned_cols=388 Identities=18% Similarity=0.141 Sum_probs=246.3
Q ss_pred hhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcChhhHhhh
Q 037996 27 TLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTG 105 (535)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~ 105 (535)
+.+|+.+...++... ++++|+++|++|||++++++.+++.+|+++++++ +++.+++++|+++|+|.|.....
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------~~~~~l~~GR~l~G~g~G~~~~~ 162 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------PSWYQLIVGRILTGLGVGGASVL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhccchhhhhhc
Confidence 458988888888865 9999999999999999999999999999998766 57899999999999999999999
Q ss_pred hhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcc-
Q 037996 106 ALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVYGND--SKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSH- 181 (535)
Q Consensus 106 ~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~- 181 (535)
.+.+++|..|+ .||...+.......+|. +.+.+.+....+. .|+..+.+..+|.+...++.+++++.|+.....+
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi-~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~ 241 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFITIGI-LLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR 241 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHHHHH-HHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC
Confidence 99999999985 79999999888886544 4456666655553 5777788888888777776555553333211000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCcccCCcCcc
Q 037996 182 EAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEI 261 (535)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (535)
+.+.-. .....+.. +..+.+.+
T Consensus 242 ~~~a~~---------------------------------------------------~l~~l~g~--~~~~~~~~----- 263 (513)
T KOG0254|consen 242 LEEAKR---------------------------------------------------SLKRLRGL--SPEDVEVE----- 263 (513)
T ss_pred hHHHHH---------------------------------------------------HHHHHhCC--CCcchHHH-----
Confidence 000000 00000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHH----hhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCC
Q 037996 262 EPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQ----ALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYP 337 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 337 (535)
.++ .. .+...............+ ..+++.++...+..+.+....+...++.+.+.+..|.+
T Consensus 264 --------~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~ 328 (513)
T KOG0254|consen 264 --------LEL-----LK--IKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLK 328 (513)
T ss_pred --------HHH-----HH--HHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCC
Confidence 000 00 000000000000001111 22334455555666666666667778888898988876
Q ss_pred CccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-----C--------cchHHHHH
Q 037996 338 TKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-----F--------PGSVYVAS 404 (535)
Q Consensus 338 ~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-----~--------~~~~~~~~ 404 (535)
... .....+.++.+.++..++.++.||+|| +.++..+...+.++.+++... . .+..++..
T Consensus 329 ~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gR------r~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 329 SDT-FLASIILGVVNFLGTLVATYLVDRFGR------RKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 544 455567778888888999999999954 466677777777776655421 1 11222222
Q ss_pred HHHHhhhc-chhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 405 VIIGFSFG-AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 405 ~l~g~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.++-..++ ...++...+.+|.+|.+.|+++.++....+.+.+++. ........+..
T Consensus 402 ~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~---------------------- 458 (513)
T KOG0254|consen 402 CLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEAL---------------------- 458 (513)
T ss_pred HHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhc----------------------
Confidence 22222222 2334455688999999999999999999998888663 22222222221
Q ss_pred cccchHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHhHHhhhhcc
Q 037996 484 VKCYRLPFIILACVTCFGAL-VSFILVIRTREFYRSDIYKKFREN 527 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~ 527 (535)
+ ....|...+.++.++.+ ...+..+|+|.+..++++++.+++
T Consensus 459 -~-~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 459 -G-IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred -c-ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 0 24566666666766666 677788999998888877765544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=177.45 Aligned_cols=126 Identities=13% Similarity=0.003 Sum_probs=110.8
Q ss_pred ccccccHHHHHHcCCChhh-hHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 9 LFGTYSKDIKASLGYDQST-LNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~-~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.+...|++.+|+|+|++| .+.+.+.+..++.. .++.|+++||+|.|+++.++.+..++.+++.+++ .++.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-------~Sl~ 116 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-------TSVW 116 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 4466789999999999999 99987777777765 9999999999999999999999999988877654 5789
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLA 142 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~ 142 (535)
.+.+.|++.|+++|..+ +...++.+||| ++|++++|+..++..+|.++.+++...
T Consensus 117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999998 589999999999988898887755544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-24 Score=224.38 Aligned_cols=382 Identities=17% Similarity=0.135 Sum_probs=222.4
Q ss_pred hhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcChhhHhhh
Q 037996 27 TLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTG 105 (535)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~ 105 (535)
+.+++.+...++..+ ++++|.++||+|||+++.++.++..+|.++.+++ ... ++++.+++.|+++|+|.|...+.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--~~~--~~~~~~~~~R~~~G~~~g~~~~~ 122 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA--PSY--NNFWMLLIGRFLIGFGIGGAYVV 122 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc--ccc--ccccccccccccccccccccccc
Confidence 456777778888865 8999999999999999999999999997765433 100 16889999999999999999999
Q ss_pred hhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcc
Q 037996 106 ALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYG---NDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSH 181 (535)
Q Consensus 106 ~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 181 (535)
...++.|..| ++||+...+...+..+|..+...+...+.. ++.|+.......+|.+..++....+++.|+
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~------ 196 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPR------ 196 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------
Confidence 9999999996 679999999888877776554333222211 123555555555555444333333332222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCcccCCcCcc
Q 037996 182 EAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEI 261 (535)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (535)
+. ..+.+.++..+..+..
T Consensus 197 ----wL---------------------------------------------------------~~~~~~~~A~~~l~~~- 214 (451)
T PF00083_consen 197 ----WL---------------------------------------------------------LSKGRDEEAEKVLRKL- 214 (451)
T ss_pred ----ee---------------------------------------------------------cccccccccccccccc-
Confidence 11 0000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHH----HHH-HHHHHHhhhhchhhhhcchHHHHhhcCC
Q 037996 262 EPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSID----MLI-LFVATFGGLGSSLTAIDNLGQIGESLGY 336 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 336 (535)
+++ +.++++.++. ..+.++.++. +.+.++.++++. ... ..+..+..........++.+.+.++.+.
T Consensus 215 ~~~----~~~~~~~~~~--~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~ 285 (451)
T PF00083_consen 215 RGK----EIEDEEIEEI--KAEKKESQES---KASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGI 285 (451)
T ss_pred ccc----cccccccccc--cccccccccc---ceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000000000 0000000000 022334444432 111 1122222222223344566677777777
Q ss_pred CCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-----ccCc-----chHHHHHHH
Q 037996 337 PTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-----FPFP-----GSVYVASVI 406 (535)
Q Consensus 337 ~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-----~~~~-----~~~~~~~~l 406 (535)
+.. -....+..+...++.+++.++.||+|||+ .+..+..+++++.+.+. ..+. ...++...+
T Consensus 286 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 357 (451)
T PF00083_consen 286 SNS--FLATLILGLVNFLGTLLAIFLIDRFGRRK------LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLAL 357 (451)
T ss_pred ccc--ccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccceeeee
Confidence 665 22233555667778888889999997663 33344444444433332 1111 122222333
Q ss_pred HHhhhc-chhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccc
Q 037996 407 IGFSFG-AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVK 485 (535)
Q Consensus 407 ~g~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (535)
...+.+ ...++...++.|.+|++.|+++.|+....+.+++++ +|.+...+.+..+
T Consensus 358 ~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i-~~~~~~~~~~~~~----------------------- 413 (451)
T PF00083_consen 358 FFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI-IPFLFPYLFNNLG----------------------- 413 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-----------------------
Confidence 323333 223455578899999999999999999999999977 7888777776632
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHh
Q 037996 486 CYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYK 522 (535)
Q Consensus 486 ~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 522 (535)
....+.+.+++++++.+...++.+|+|++..+++++
T Consensus 414 -~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 414 -GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred -ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 244666677777777778888899999987777665
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=164.67 Aligned_cols=353 Identities=15% Similarity=0.095 Sum_probs=220.3
Q ss_pred ccCcccccc---cccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccc-cchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 3 GAGATYLFG---TYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEIT-PTWFVLLVGSGMNFAGYLMIWLAVT 77 (535)
Q Consensus 3 ~~g~~~~~~---~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~ 77 (535)
..|+.+.|. ....+.++|.+++.++..++-+.+..-.++ .+++|++.||. |.|...++-+++..+|.+.+++
T Consensus 53 gfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~--- 129 (459)
T KOG4686|consen 53 GFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAA--- 129 (459)
T ss_pred cccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHh---
Confidence 345555553 345667777778888887766666666654 89999999985 9999888888888888877632
Q ss_pred cCCCChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHH----HHHHHHHhcCChhHHH
Q 037996 78 GKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAIL----TQVYLAVYGNDSKSLI 152 (535)
Q Consensus 78 ~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~----~~~~~~~~~~~~~~~~ 152 (535)
+... +++|.+...|++.|+|.--.-.+-.+++.-||+ |+.+.++|+.....-+|+.+- +++...+-. .
T Consensus 130 Ggi~-~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~-----~- 202 (459)
T KOG4686|consen 130 GGIS-HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR-----M- 202 (459)
T ss_pred chHH-HHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH-----h-
Confidence 3332 579999999999999988777778888899996 889999999766555655331 111110000 0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhh
Q 037996 153 LLIGWLPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPL 232 (535)
Q Consensus 153 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (535)
.|... + + .++++++.....-. -.+.+...
T Consensus 203 -----~~~~g---------------h------T---------~LG~~l~~~~~tc~----------------~slical~ 231 (459)
T KOG4686|consen 203 -----FPGVG---------------H------T---------LLGLWLCFEVKTCK----------------QSLICALS 231 (459)
T ss_pred -----cccch---------------H------H---------HHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 00000 0 0 00111111100000 00000000
Q ss_pred hHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHH
Q 037996 233 AIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVA 312 (535)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (535)
.-..++...+.-.+++.+. .++|+-.+..+ -+|.||.+.++
T Consensus 232 lg~~D~rAerilh~e~g~~----------------------------------Ge~pkLtdv~~-----f~ppfw~~~ii 272 (459)
T KOG4686|consen 232 LGLSDDRAERILHLEEGFL----------------------------------GEEPKLTDVNT-----FYPPFWVLVII 272 (459)
T ss_pred hhhhhhHHHHHHhhhcCcc----------------------------------cCCcccccccc-----cCccHHHHHHH
Confidence 0000100000000000000 00111111111 24789999888
Q ss_pred HHhhhhchhhhhcchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHH
Q 037996 313 TFGGLGSSLTAIDNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLL 391 (535)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~ 391 (535)
.++.+...+-++..-+.+.+ .+|+++..++.+.+.......+.+++.|.++||.|++- +....+.+...++--.
T Consensus 273 cv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----~wv~~a~~~tl~~H~~ 347 (459)
T KOG4686|consen 273 CVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----WWVASACILTLLGHSG 347 (459)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----hhHHHHHHHHHHHhhh
Confidence 88776665555555555555 56999999999999888888999999999999998652 3333444444444333
Q ss_pred HhccCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 392 IAFPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 392 ~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
+.+ +.+..++.+.+.|+.+..........++.+.|+++.|+++|++....++|-.+ -|+++|.+.|+.+
T Consensus 348 l~F-t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~-i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 348 LFF-TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF-IPIIAGFIADGDG 416 (459)
T ss_pred HHh-hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH-HhhhhheeecCCC
Confidence 333 45667788888898877665555667788889999999999999999999966 8999999999843
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-18 Score=174.07 Aligned_cols=415 Identities=10% Similarity=0.043 Sum_probs=217.3
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhhc-cccccchhhhccc-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDLG-ANVGVPSGLLGEI-TPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCA 90 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 90 (535)
...++++++|+++++.+++...+... ....+++|+++|| +|||+++.++.+++.+++.+++++ . ++.+.+++
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~-----~-~~~~~l~~ 117 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS-----G-HDAGIVYM 117 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-----c-ccHHHHHH
Confidence 34556789999999998854444333 3346789999999 599999999999999887665432 1 23456678
Q ss_pred HHHHhhcChhhHhhhhhhhHhhhcCC-C--CcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 91 YICIGANSQNFANTGALVTCVKNFPE-S--RGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 91 ~r~l~Gig~g~~~~~~~~~~~~~fp~-~--rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
.|+++|+|.|...+....++.++||+ + |+.+.++...+.++|+.+.+.+.+.+.+...|++.+....+.....++..
T Consensus 118 ~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 118 GMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999888888999999964 2 45578887777788887766666666554444444444443333333222
Q ss_pred hhhc-ccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 168 YTIR-IIPVVQ-HTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 168 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
++.+ ..++.. ...+++.+....... ...+..+....... ...++.............. ....++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~------ 264 (500)
T PRK09584 198 AFCQRWVKQYGSKPDFEPINYRKLLLT--IVGVVALIAIATWL-LHNQEIARMALGVVALGIV----VIFGKEA------ 264 (500)
T ss_pred HHhHHHhccCCCCCCccccchhhHHHH--HHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH----HHHHHHH------
Confidence 2222 112111 100011111110000 00111111000000 0000000000000000000 0000000
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
.+ . .+.-|+|. +.....+... ...+....
T Consensus 265 -----------------------------------------~~-~-------~~~~~~~~-~~~~~~~~~~-i~f~~~~~ 293 (500)
T PRK09584 265 -----------------------------------------FA-M-------KGAARRKM-IVAFILMLEA-IIFFVLYS 293 (500)
T ss_pred -----------------------------------------hh-c-------CHHHHHHH-HHHHHHHHHH-HHHHHHHH
Confidence 00 0 00001121 1111111111 11111111
Q ss_pred chHHHHh---hcCCCC------ccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-
Q 037996 326 NLGQIGE---SLGYPT------KTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP- 395 (535)
Q Consensus 326 ~~~~~~~---~~g~~~------~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~- 395 (535)
..+.... ....+. ...+++.++..+...+..++.+++-+|.++|. +....+.++.++++++++.+...
T Consensus 294 q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~ 371 (500)
T PRK09584 294 QMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGA 371 (500)
T ss_pred HhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 111111 12445556666666666677666667766554 33445667888888887765422
Q ss_pred ---------CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHh
Q 037996 396 ---------FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKEL 466 (535)
Q Consensus 396 ---------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~ 466 (535)
+.+++....++.|++.+...|...+++.+..|++.||..+|+..+...+|+.+ +..+.+.........
T Consensus 372 ~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~-~g~~~~~~~~~~~~~-- 448 (500)
T PRK09584 372 KFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI-AGYVANLMAVPDNVT-- 448 (500)
T ss_pred HhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccc--
Confidence 13467777889999999999999999999999999999999888777777755 434433221100000
Q ss_pred hhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 467 AKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
..-...+.|...|...++++++..++.+.+.+..+|
T Consensus 449 ------------~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 449 ------------DPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred ------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001237788888877776555555444444444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=178.66 Aligned_cols=354 Identities=14% Similarity=0.068 Sum_probs=220.8
Q ss_pred cHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037996 14 SKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYI 92 (535)
Q Consensus 14 ~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r 92 (535)
.+.+..+..-|+..++++..+..+..+ +++++|.++||+.||++++.+-++..+..+.+++... ....+.+.+++.-
T Consensus 33 ~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~--~~~~~~~~Ll~~~ 110 (524)
T PF05977_consen 33 LAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAF--FGLLSPWLLLILT 110 (524)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 345555565677788887777777775 5999999999999999999999887766555543322 2224578899999
Q ss_pred HHhhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhc
Q 037996 93 CIGANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIR 171 (535)
Q Consensus 93 ~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 171 (535)
++.|++.++..|+-.+++.+..|+ +...++++....+.++-.+. |.+.+++...+
T Consensus 111 fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iG----------------------PalgG~Lva~~-- 166 (524)
T PF05977_consen 111 FLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIG----------------------PALGGILVAFF-- 166 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhcc----------------------chHHHHHHHHH--
Confidence 999999999999999999999985 67888888777665554443 22222221100
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCC
Q 037996 172 IIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPS 251 (535)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (535)
+....|. +..+ .++.... +....+ .+ .+++
T Consensus 167 ---------G~~~~f~-inal-----sfl~~i~---------------------------~l~~~~-------~~-~~~~ 196 (524)
T PF05977_consen 167 ---------GAAAAFL-INAL-----SFLISIL---------------------------ALLRWK-------PP-PPPS 196 (524)
T ss_pred ---------HHHHHHH-HHHH-----HHHHHHH---------------------------HHHHcc-------cc-cccc
Confidence 0000010 0000 0000000 000001 00 0000
Q ss_pred CcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCC-CCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHH
Q 037996 252 EVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPP-RGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQI 330 (535)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (535)
+ . ++++- +.-...++-..++|.........++.......+...+|.+
T Consensus 197 ~-----------------~---------------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~ 244 (524)
T PF05977_consen 197 S-----------------L---------------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLF 244 (524)
T ss_pred c-----------------c---------------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHH
Confidence 0 0 00000 0000122333345554443332222222222233345665
Q ss_pred Hh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHH
Q 037996 331 GE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIG 408 (535)
Q Consensus 331 ~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g 408 (535)
.+ .+|.++...+++.+..+++..+|.++.+++.+|+.+ ...+..+.++.+++.+.+... +.+...+..++.|
T Consensus 245 a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~------~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 245 ARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSS------RRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc------chhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 54 568888999999999999999999999888777643 233445556666666666655 4555666777888
Q ss_pred hhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccch
Q 037996 409 FSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYR 488 (535)
Q Consensus 409 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (535)
++.........+.+++..|++.+|+++++..+....+..+ |..+.|.+.|..+ .+
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l-Gsll~G~la~~~g------------------------~~ 373 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL-GSLLWGFLADHFG------------------------VR 373 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC------------------------HH
Confidence 8888877888899999999999999999999888777755 9999999999855 55
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037996 489 LPFIILACVTCFGALVSF 506 (535)
Q Consensus 489 ~~f~~~~~~~~~~~~l~~ 506 (535)
.++.+.++..+++.++..
T Consensus 374 ~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 374 TALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667666665555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-17 Score=167.07 Aligned_cols=177 Identities=14% Similarity=0.057 Sum_probs=117.5
Q ss_pred cHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHH-HhhHHHHHHhhhhchhhhhccCCCc
Q 037996 296 TILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVS-IWNYFGRVFAGFVSEGLLAKYKMPR 374 (535)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~-i~~~ig~~~~G~l~Dr~~~~~~~~r 374 (535)
+.++.+|+|.+|......++..........+.+.+.++.|+++.+.+....... ....++.+++|++.||+++|+
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~---- 275 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR---- 275 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH----
Confidence 457788888887766555444332222333445555778999999999888776 466788999999999997552
Q ss_pred hHHHHHHHHHHHHH-HHHHhcc------CcchHHHHHHHHHhhhcchhhHHHHHHHHhhcc-CcccchhhHHhhhhhhHH
Q 037996 375 PLMLTLVLVLSCIG-LLLIAFP------FPGSVYVASVIIGFSFGAQLPLIFAIISELFGL-KYYSTLFNCGQLASPLGS 446 (535)
Q Consensus 375 ~~~~~~~~~~~~i~-~~~~~~~------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ig~ 446 (535)
.+..+.++..+. ...+... +....+....+.+++.+...+.......+..++ +.+++.+++.+....+|.
T Consensus 276 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~ 353 (390)
T TIGR02718 276 --TFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE 353 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 233333333121 1111111 111222333444566677777777777777776 889999999999999999
Q ss_pred HHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHH
Q 037996 447 YILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGAL 503 (535)
Q Consensus 447 ~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 503 (535)
.+ +|.+.|.++|..+ |+..|.+.+++.+++.+
T Consensus 354 ~~-g~~~~G~l~~~~G------------------------~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 354 LI-ASSIAGYLTDRFG------------------------YAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HH-HHHHHHHHHHHHc------------------------cHHHHHHHHHHHHHHHH
Confidence 77 9999999999744 88888887776666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-19 Score=189.41 Aligned_cols=124 Identities=10% Similarity=0.014 Sum_probs=103.9
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCC---------
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKI--------- 80 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~--------- 80 (535)
+...+.++++|+++.++.+++.+.+.++.++ .++.|++.||+|||+++.+|.+++++|.++.++. ++.
T Consensus 53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp--hf~~~~y~~~~~ 130 (633)
T TIGR00805 53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP--HFLSGRYSYSTT 130 (633)
T ss_pred HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh--HHhcCCcccccc
Confidence 4567899999999999999988888888865 8999999999999999999999999998887543 100
Q ss_pred -----------------------------------C--ChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchh
Q 037996 81 -----------------------------------A--KPAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMI 122 (535)
Q Consensus 81 -----------------------------------~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~ 122 (535)
. +..+..+++.|+++|+|.+..++....++.|++| ++|++++
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 0 0124567789999999999999999999999996 6799999
Q ss_pred hhhHHhhhhhHHHH
Q 037996 123 GLLKGFTGLSGAIL 136 (535)
Q Consensus 123 g~~~~~~~lg~~i~ 136 (535)
|+...+..+|..+.
T Consensus 211 ~i~~~~~~iG~~lG 224 (633)
T TIGR00805 211 GILESIAVFGPAFG 224 (633)
T ss_pred HHHHHHHHhhhHHH
Confidence 99888877777554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=180.79 Aligned_cols=384 Identities=18% Similarity=0.100 Sum_probs=219.2
Q ss_pred HHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037996 19 ASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGAN 97 (535)
Q Consensus 19 ~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi 97 (535)
+.++.+.....+..+.+.+|..+ .+++|.++||+|||++++++.++..++.+..+++ +|++.++++|+++|+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSGF 183 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHh
Confidence 55666777777778888888865 8999999999999999999999999997666554 789999999999999
Q ss_pred ChhhHhhhhhhhHhhhc-CCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 037996 98 SQNFANTGALVTCVKNF-PESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVV 176 (535)
Q Consensus 98 g~g~~~~~~~~~~~~~f-p~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 176 (535)
+.+..+.....++.|++ |++|+.++.+ ....-.++.+..+...++.. + |++.......|....++..++.++.|+.
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rw 260 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-D-WRWLFWIISIPSGLFLLLWFLPPESPRW 260 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHHHccCcChHH
Confidence 99999999999999999 6789999999 44443556565555555555 3 4444444344444433322222222111
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCcccC
Q 037996 177 QHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTVE 256 (535)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (535)
....+..+... ...++..+.+.++..+.+.
T Consensus 261 l~~~g~~~~a~-----------------------------------------------~~l~~~a~~n~~~~~~~~~--- 290 (521)
T KOG0255|consen 261 LLSKGRIDEAI-----------------------------------------------KILKKIAKLNGRKLSVKEL--- 290 (521)
T ss_pred HHHcCchHHHH-----------------------------------------------HHHHHHHhhcCCCCCcHHH---
Confidence 00000000000 0000000000000000000
Q ss_pred CcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCC
Q 037996 257 KPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGY 336 (535)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 336 (535)
.+.....+.......++.....+.++.+++....+.....+.......+........+|.
T Consensus 291 --------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~ 350 (521)
T KOG0255|consen 291 --------------------LRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGG 350 (521)
T ss_pred --------------------HHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCc
Confidence 000000000001111122346677777654333222222221111111122222233332
Q ss_pred CCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-Cc-c--hHHHHHHHHHhhhc
Q 037996 337 PTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FP-G--SVYVASVIIGFSFG 412 (535)
Q Consensus 337 ~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~-~--~~~~~~~l~g~~~g 412 (535)
+ ......+.+.....+....+...|++ +|+.....+.++..++.+..... .. . ...+...+..++.+
T Consensus 351 ~---~~~~~~~~~~~~~p~~~~~~~~~~~~------gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (521)
T KOG0255|consen 351 N---IYLNFTLSGLVELPAYFRNGLLLPEF------GRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIG 421 (521)
T ss_pred h---HHHHHHHHHHHHhhHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence 2 22233344445566666778888888 45577777888877777766543 22 2 23444444455667
Q ss_pred chhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHH
Q 037996 413 AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFI 492 (535)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 492 (535)
..+.....+..|.+|+..|..+.+.......+++.+ +|.+.-..... . ....+.
T Consensus 422 ~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~-ap~~~~~~~~~-~------------------------~~~~~~ 475 (521)
T KOG0255|consen 422 SAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSIL-APLFPLLLRQM-F------------------------PLLGLI 475 (521)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh-c------------------------ccchHH
Confidence 777777899999999999999999999999999966 87665333222 1 111222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 037996 493 ILACVTCFGALVSFILVIRTREFYR 517 (535)
Q Consensus 493 ~~~~~~~~~~~l~~~l~~~~~~~~~ 517 (535)
+++.+..+..+++..+.++++....
T Consensus 476 ~~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 476 LFGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCCC
Confidence 2455556666666677777776544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-17 Score=166.69 Aligned_cols=341 Identities=14% Similarity=0.076 Sum_probs=189.9
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhh-ccccccchhhhccc----ccc-hHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDL-GANVGVPSGLLGEI----TPT-WFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~-~~~~~~~~G~l~Dr----~G~-r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
..+.+.+++|++..+++.+....-+ -.+..|+.|.++|| +|| |+.++.+.+...++..+.+... .......++
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p-~~~~~~~~~ 110 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP-DFGATGKII 110 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC-CCCcchHHH
Confidence 3456788999999999996555554 44569999999999 677 4556667777666654432211 111112345
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC--CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP--ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISV 164 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp--~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 164 (535)
.+++..++.+.+......+-.++..|+.+ ++|++..++...+..+|+.+.+.+. .|+...
T Consensus 111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~-----------------~pl~~~- 172 (444)
T PRK09669 111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA-----------------LPLVDI- 172 (444)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH-
Confidence 56666666677776776667778888883 5799888887666556655543211 121111
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+ . . .+.+..+.....+ .++...+ +... .....+|
T Consensus 173 ----~-~---~----~~~~~g~~~~~~i---~~ii~~v------------------------~~~~-~~~~~~e------ 206 (444)
T PRK09669 173 ----L-G---K----GDEQKGYFYAMMV---MGLLGVV------------------------LFFC-CFFMTKE------ 206 (444)
T ss_pred ----h-C---C----CchhhhHHHHHHH---HHHHHHH------------------------HHHH-HhCCeEE------
Confidence 0 0 0 0011111110000 0000000 0000 0000010
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
+ .+++ ++++.......++.+|||+++.+....++.........
T Consensus 207 -~-~~~~-----------------------------------~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~ 249 (444)
T PRK09669 207 -R-YTPE-----------------------------------VDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRG 249 (444)
T ss_pred -e-cCCC-----------------------------------CcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHh
Confidence 0 0000 00000012245778899999887766554332222222
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHH-HHHHHhc-c-CcchHH
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCI-GLLLIAF-P-FPGSVY 401 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~-~-~~~~~~ 401 (535)
....++.+..--++...+.+.....+..+++.+++++++||+++|+ .+..+.+...+ +...... + +.+.++
T Consensus 250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (444)
T PRK09669 250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR------AFKWTIVAFVILSALIFFIPPSNVWLIF 323 (444)
T ss_pred hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhCcchHHHHH
Confidence 2233333322112233344455566778889999999999997653 23333333332 2222222 2 334556
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhc-------cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFG-------LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
+..++.|++.+...++..++++|..+ .+..|..+|..+....+|..+ +|.+.|.+.+..+
T Consensus 324 ~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~al-g~~i~g~ll~~~G 390 (444)
T PRK09669 324 ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAI-GGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 66778899999888888899988874 455677888888899999976 9999999988743
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-17 Score=166.00 Aligned_cols=159 Identities=10% Similarity=0.032 Sum_probs=108.8
Q ss_pred cHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCc
Q 037996 296 TILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPR 374 (535)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 374 (535)
..++++|||.++...+..++............+++.++ .|.++...++......++.+++.++.+++.||+++|
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~----- 294 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK----- 294 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence 35678899999888776665554444444455555554 465544444444444566788899999999999644
Q ss_pred hHHHHHHHHHHHHHHHHHhcc---CcchHHHHHHHHHhhhcchhhHHHHHHHHhhcc-------CcccchhhHHhhhhhh
Q 037996 375 PLMLTLVLVLSCIGLLLIAFP---FPGSVYVASVIIGFSFGAQLPLIFAIISELFGL-------KYYSTLFNCGQLASPL 444 (535)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~i 444 (535)
..+.++.++..++.+.+... +.+..++..++.|++.+...+...+...|..+. +..|..+|+.+....+
T Consensus 295 -~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 295 -NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence 34455666655555444332 233445556778888888888888888887754 3569999999999999
Q ss_pred HHHHHhHhHhHhhhhhh
Q 037996 445 GSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 445 g~~i~~p~i~g~l~~~~ 461 (535)
|..+ ++.+.|.+.+..
T Consensus 374 g~ai-g~~i~g~~l~~~ 389 (448)
T PRK09848 374 GQAI-GGSIPAFILGLS 389 (448)
T ss_pred HHHH-HHHHHHHHHHHc
Confidence 9977 999999887764
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-17 Score=152.72 Aligned_cols=339 Identities=12% Similarity=0.054 Sum_probs=190.3
Q ss_pred hhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcChhhHhhh
Q 037996 27 TLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTG 105 (535)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~ 105 (535)
-.|.+.+.+.+..++ ++.+|.++||+|||++++++++..++.+++.+++ .||..+.+.|++.|+.-|-.. .
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------~~F~afv~aR~l~Gi~kgnl~-v 140 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------RNFAAFVLARFLGGIFKGNLS-V 140 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhccCchH-H
Confidence 355677777777765 9999999999999999999999999987776555 678556677999999999884 5
Q ss_pred hhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhh
Q 037996 106 ALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHEAK 184 (535)
Q Consensus 106 ~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (535)
..++++|.++ |+|+++++.+.+.+++|-.+ +|+.++++.. +. ++. .+.
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfil-GPmIGgyla~---------------------f~-~~~--------g~~ 189 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFIL-GPMIGGYLAQ---------------------FS-SIS--------GSY 189 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhh-cchhhhHHHh---------------------hH-hhh--------ccC
Confidence 7788999995 78999999999999998755 5444443322 00 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCcccCCcCccCCC
Q 037996 185 VFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEIEPK 264 (535)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (535)
++. ..+....++.+.- .+.+.+..+|.++ .+|++++
T Consensus 190 p~a---lP~~~v~i~a~~~-------------------------v~~~~~~lpETL~-------------~rk~~~~--- 225 (451)
T KOG2615|consen 190 PFA---LPCLLVFILAAGD-------------------------VTFFPWFLPETLP-------------LRKRNDE--- 225 (451)
T ss_pred chH---HHHHHHHHHHHHH-------------------------HHHHHHhCCcccc-------------chhhccc---
Confidence 010 0000011111000 0000011111110 0000000
Q ss_pred CCCCCCCCCCCCCCcccccccc--CCCCCCCCCcHHH-hhhhHHHHHHHHHHHhhhhchhhhhcchHHHH-hhcCCCCcc
Q 037996 265 KEPLPPPDEPKGSTKSCFLTIC--DKPPRGEDYTILQ-ALLSIDMLILFVATFGGLGSSLTAIDNLGQIG-ESLGYPTKT 340 (535)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~ 340 (535)
+. +..+.. +++ +...+.. .+....++.+..+ +--.+.+-+..+.+.. ....+-+....+. +.+|+++.+
T Consensus 226 -~~-~~~~~~-~~~-~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~---l~s~~~~t~~~l~~~rfg~ss~~ 298 (451)
T KOG2615|consen 226 -HS-TLQEAA-DDR-LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLE---LFSGLENTVLFLTHGRFGYSSMQ 298 (451)
T ss_pred -cc-chhhhh-hhh-hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH---HHHHHHhhHHHhhcCccCCChhh
Confidence 00 000000 000 0000000 0000000000011 0001111111111110 0011222333332 456999999
Q ss_pred chhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHH
Q 037996 341 IKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIF 419 (535)
Q Consensus 341 a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~ 419 (535)
.+-+.+..++.+.+-.....+..||... ..+-.+.....++.-.++++... ++..++....+..+......+...
T Consensus 299 ~G~vl~~tGl~m~~~ql~~~~~l~~~~~----~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt 374 (451)
T KOG2615|consen 299 QGKVLSTTGLLMLVIQLALVPILPRYKG----NIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLT 374 (451)
T ss_pred heeeeehhhHHHHHHHHhcccccccccc----chhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHH
Confidence 9988888888877766666666666531 11122223333333344444443 566778888888888777777777
Q ss_pred HHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 420 AIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 420 ~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
.++....|++++|++.|+....+.++-.+ ||.+.|.+..+
T Consensus 375 ~Lv~~~~~~~qrG~~~Gi~~Sl~alaRai-GPlv~g~i~~W 414 (451)
T KOG2615|consen 375 SLVHKYGPQSQRGTLNGIFRSLGALARAI-GPLVSGVIFSW 414 (451)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHHh-hhhhhheeEEE
Confidence 88899999999999999999999999977 99999888876
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-16 Score=161.51 Aligned_cols=346 Identities=10% Similarity=0.022 Sum_probs=191.3
Q ss_pred ccHHHHHHcCCChhhhHHHHHhh-hhccccccchhhhcc----cccc-hHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFK-DLGANVGVPSGLLGE----ITPT-WFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~-~~~~~~~~~~G~l~D----r~G~-r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+...+.+.+|++..+++.+.... .+-.+..|+.|.++| |+|| |+.++++.+.+.++..+++.. .....+..+.
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~-p~~~~~~~~~ 107 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA-HLFEGTAQYV 107 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC-CCCCccHHHH
Confidence 34566778899999999954444 444455999999999 5699 666777877777775544221 0111111244
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhc--CCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNF--PESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISV 164 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~f--p~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 164 (535)
.+++..++.+++..+..++-.++..|.- |++|.+..+....+..+|+.+.+.+.. |++.
T Consensus 108 ~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~-----------------~~~~-- 168 (473)
T PRK10429 108 FVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL-----------------PFVN-- 168 (473)
T ss_pred HHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH--
Confidence 4555666777888888777778888877 367999888855544455444321111 1110
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
. .. . .++...+.....+ .++..++.. +......+|
T Consensus 169 ---~-~g---~----~~~~~g~~~~~~i---~~~~~~~~~-------------------------~~~~~~~~e------ 203 (473)
T PRK10429 169 ---Y-VG---G----GDRGFGFQMFTLV---LIAFFIVST-------------------------IITLRNVHE------ 203 (473)
T ss_pred ---H-hC---C----CchhhhHHHHHHH---HHHHHHHHH-------------------------HHHHcCcee------
Confidence 0 00 0 0011112111111 000000000 000000010
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
++.+.. ++ .+++++.......+..++||.++.+....++.........
T Consensus 204 ----~~~~~~--------------~~--------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~ 251 (473)
T PRK10429 204 ----VYSSDN--------------QV--------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIIN 251 (473)
T ss_pred ----cCCccc--------------cc--------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 00 0000000001123446688888877766554443333333
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-----cc-Ccc
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-----FP-FPG 398 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-----~~-~~~ 398 (535)
...+++.+...-++...+.+.++..+..+++.+++++++||+++|+ .+..+.++..++.+.+. .+ +.+
T Consensus 252 ~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
T PRK10429 252 GFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI------LWAGASIFPVLSCGVLLLMGLAAPHNAL 325 (473)
T ss_pred hheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence 3344454443334445556666777888999999999999997652 33333333333322221 12 234
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhc-------cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFG-------LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
.+++..++.|++.+...+...++++|..+ .+..|..+|.......++..+ ++.+.|++.+..+
T Consensus 326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al-~~~i~g~~l~~~G 395 (473)
T PRK10429 326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAF-AAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 45556677788888888888888888844 456677899999999999977 9999999988643
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=155.66 Aligned_cols=187 Identities=19% Similarity=0.251 Sum_probs=140.1
Q ss_pred cHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHH-HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCc
Q 037996 296 TILQALLSIDMLILFVATFGGLGSSLTAIDNLGQI-GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPR 374 (535)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 374 (535)
+.+++.|.|+...+++..++..-....++.....+ .+.+|+++.+...+..+..+..++|.+++|++.||++.|. +
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~---~ 349 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT---K 349 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---h
Confidence 45666677887777777665433333333333334 4478999999888888999999999999999999998652 1
Q ss_pred hHHHHHHHHHHHHHHHHHh--------ccCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHH
Q 037996 375 PLMLTLVLVLSCIGLLLIA--------FPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGS 446 (535)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~ 446 (535)
+.++....+...++...+. ..+.+.+++..++.|++.|...+..-++.+|+.|+++.++-+|+..+.+...+
T Consensus 350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss 429 (477)
T PF11700_consen 350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS 429 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 2333322222233333222 33567788999999999999999999999999999999999999999999999
Q ss_pred HHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 447 YILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 447 ~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
++ ||.+.|.+.+. +++.|..+....++.++++++...+.
T Consensus 430 ~l-GPll~g~i~~~-----------------------tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 430 WL-GPLLFGLITDA-----------------------TGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HH-HHHHHHHHHHH-----------------------hCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 77 99999999998 44688999888888888876554333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=154.24 Aligned_cols=385 Identities=17% Similarity=0.136 Sum_probs=238.2
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH--
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW-- 86 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~-- 86 (535)
|+....+..+.|+ +....-|.+..+.+.++ +++++-|+.||+|-|...+++..+..+|..+=.++..-+.+ +.++
T Consensus 64 ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~-~~f~~~ 141 (480)
T KOG2563|consen 64 YAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVP-PLFRRP 141 (480)
T ss_pred ehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcccc-ccchhh
Confidence 4455556778888 66677777776666665 59999999999999999999999999997665443333333 2345
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhc-CCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNF-PESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~f-p~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
....+-.+.+.++-+....+..+...|| |++|..|..+-..++.+|.++...+- |+
T Consensus 142 l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp------------------pi----- 198 (480)
T KOG2563|consen 142 LTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP------------------PI----- 198 (480)
T ss_pred hhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc------------------ce-----
Confidence 5567788888888888888889999999 47899999887777777766532110 11
Q ss_pred HHhhhcccCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFY-HFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+++ +.+++.+..+.+. .+..+. .+++..+ ++....++
T Consensus 199 ---lV~---~~~~~~~~~~~~~~~f~~~~-~l~~l~l-----------------------------~l~~~~~~------ 236 (480)
T KOG2563|consen 199 ---LVP---SSKDSEDNSWLFFTLFLGVE-CLAALLL-----------------------------ALVLFVFT------ 236 (480)
T ss_pred ---ecC---CCCCcchhHHHHHHHHHHHH-HHHHHHH-----------------------------HHHHHhcC------
Confidence 111 1111001111111 000000 0000000 11111111
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
+++|.+++... ....+.....+.+++++|++|.++.+++....+..+...
T Consensus 237 --~~P~tPps~s~----------------------------~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~ 286 (480)
T KOG2563|consen 237 --KKPPTPPSASQ----------------------------AALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLS 286 (480)
T ss_pred --CCCCCCCchhH----------------------------hhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHH
Confidence 01111111000 000011134577899999999999988887766655544
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHH-HHHHhcc----Ccch
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIG-LLLIAFP----FPGS 399 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~-~~~~~~~----~~~~ 399 (535)
..+.......|++...+|....+..+.+++|..+.|.+.||.++.+ ..+.+......++ ..+.... ..+.
T Consensus 287 ~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk-----~~~~v~~~~~~v~~~~l~~~t~~~~~~vi 361 (480)
T KOG2563|consen 287 TLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK-----LTTLVLYLFALVGTLMLLTCTLFLGDSVI 361 (480)
T ss_pred HHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH-----HHHHHHHHHHHHHHHHHHHhhccCCceEe
Confidence 4333333455888788999999999999999999999999985432 2222223333333 2222211 2455
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccc
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKEL 479 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~ 479 (535)
++....++|++.....|+......|..-|..-++..|+.++.+++-+++ -.++-+...+..+.
T Consensus 362 v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~-~~~~~~~~~~~~~~---------------- 424 (480)
T KOG2563|consen 362 VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI-LVFIMGILAEDLGP---------------- 424 (480)
T ss_pred hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH-HHHHHHHHhhccCC----------------
Confidence 6777788899998889988888899888899999999999999888866 45666665554221
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 037996 480 ICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYR 517 (535)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~ 517 (535)
.+.+...-+.+...+++++++..++++..||.+.
T Consensus 425 ----~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~ 458 (480)
T KOG2563|consen 425 ----PGNTFPANIFLTVSALLGAILVAFFRPDYRRLRA 458 (480)
T ss_pred ----CCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence 1113334445555666666666666666655443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-14 Score=144.26 Aligned_cols=375 Identities=12% Similarity=0.035 Sum_probs=192.4
Q ss_pred cccH-HHHHHcCCChhhhHHHHHhhhhc-cccccchhhhcccc-cchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 12 TYSK-DIKASLGYDQSTLNLLGFFKDLG-ANVGVPSGLLGEIT-PTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 12 ~~~~-~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
.+.| ++.+++|+++.+.+.+...+... .+..+++|+++||+ |||++++++.++..++.++++.. . .+...+
T Consensus 30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~--~----~~~~~~ 103 (493)
T PRK15462 30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS--E----IHPSFL 103 (493)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh--h----cchhHH
Confidence 3344 45677999999999965555444 45588999999999 99999999999999997654321 1 111223
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcCC---CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFPE---SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp~---~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.+...+.++|.|...+...+++.|.||+ +|.++.++...+..+|+.+.+.+.+.+.+...+++.+..+.+..+..++
T Consensus 104 ~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 104 YLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence 3333334455566556667788999963 5888999988777788877666666555543344444444444443333
Q ss_pred HHhhhccc-CCC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHH
Q 037996 166 FVYTIRII-PVV----QHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240 (535)
Q Consensus 166 ~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (535)
..+..+.. ++. ++...++ ..... ..................... .+..........+........ ..+.
T Consensus 184 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~-- 257 (493)
T PRK15462 184 IFLCGNRHFTHTRGVNKKVLRAT-NFLLP-NWGWLLVLLVATPALITVLFW-KEWSVYALIVATIIGLGVLAK-IYRK-- 257 (493)
T ss_pred HHHHhhhhhccCCCCCCCCchhh-hHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHh--
Confidence 33322211 111 1111111 11100 000000000000000000000 000011111111111111000 0000
Q ss_pred hhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhH--HHHHHHHHHHhhhh
Q 037996 241 AIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSI--DMLILFVATFGGLG 318 (535)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 318 (535)
+. . ..| |+| .+..+.+.....+.
T Consensus 258 ---------~~------------------------------------~--------~~e--r~r~~~~~~l~~~~~~Fw~ 282 (493)
T PRK15462 258 ---------AE------------------------------------N--------QKQ--RKELGLIVTLTFFSMLFWA 282 (493)
T ss_pred ---------cC------------------------------------C--------HHH--HhhHHHHHHHHHHHHHHHH
Confidence 00 0 000 111 11222222212222
Q ss_pred chhhhhcchHHHHhh------cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH-HHHHHHHHHHHHHH
Q 037996 319 SSLTAIDNLGQIGES------LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM-LTLVLVLSCIGLLL 391 (535)
Q Consensus 319 ~~~~~~~~~~~~~~~------~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~-~~~~~~~~~i~~~~ 391 (535)
........+..+.++ .|+. -.++++.++..+.-++..++.+++=.|..+|++-++... +.++++++++++++
T Consensus 283 ~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~ 361 (493)
T PRK15462 283 FAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCI 361 (493)
T ss_pred HHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 211111112222221 1221 235677777778777778887787777644322222222 55777888888766
Q ss_pred Hhcc----------CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhh-hhHHHHHhHhHhH
Q 037996 392 IAFP----------FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLAS-PLGSYILNVKVTG 455 (535)
Q Consensus 392 ~~~~----------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~ig~~i~~p~i~g 455 (535)
+..+ +.++++...++.++|--...|+..+.++++.|++.+|..+|...... .+++.+ +..+.+
T Consensus 362 l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~-~g~~~~ 435 (493)
T PRK15462 362 LTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL-AGVIAD 435 (493)
T ss_pred HHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5321 23456677788888888888999999999999999999999986633 455544 433433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-15 Score=147.55 Aligned_cols=161 Identities=21% Similarity=0.159 Sum_probs=111.2
Q ss_pred cHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcC-CCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCc
Q 037996 296 TILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLG-YPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPR 374 (535)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 374 (535)
+.++++|+|++....+..++.......+..+.+.+.++.| .+....+...++..+..++--...+++..|++.
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~------ 272 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGI------ 272 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------
Confidence 3467899999987766655443332233334444567776 777777777777666676666677777666643
Q ss_pred hHHHHHHHHHHHHHHHHHhcc-Ccc-hHHHHH----HHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhh-hhhHHH
Q 037996 375 PLMLTLVLVLSCIGLLLIAFP-FPG-SVYVAS----VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLA-SPLGSY 447 (535)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~~~~-~~~-~~~~~~----~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~ig~~ 447 (535)
+.++.++.+..++=..++... ++. ..++.. .+.|+.++..+.....++.+..|++.++++.++.+.. .++|..
T Consensus 273 ~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~ 352 (400)
T PF03825_consen 273 KWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGA 352 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHH
Confidence 355566666666555455443 332 323222 3579999998888899999999999999999998765 578886
Q ss_pred HHhHhHhHhhhhhhhh
Q 037996 448 ILNVKVTGSLYDHQAV 463 (535)
Q Consensus 448 i~~p~i~g~l~~~~~~ 463 (535)
+ |..+.|+++|+.+.
T Consensus 353 i-G~~igG~l~~~~g~ 367 (400)
T PF03825_consen 353 I-GSLIGGWLYDAFGA 367 (400)
T ss_pred H-HHHHHHHHHHHhcc
Confidence 6 99999999998653
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-15 Score=145.41 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=113.1
Q ss_pred HhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhh---cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCch
Q 037996 299 QALLSIDMLILFVATFGGLGSSLTAIDNLGQIGES---LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRP 375 (535)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~ 375 (535)
+.+++|.++...+..++..+.......+.+.+.++ .|+++.+++...+.+..+.++||++.+++.||+++|+
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~----- 209 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR----- 209 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----
Confidence 46678888888777777666655555555555543 4899999999999999999999999999999997542
Q ss_pred HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhH
Q 037996 376 LMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTG 455 (535)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g 455 (535)
.+.++..+..++.++....+.........+.|++.+..+|...+...+.+| ++.+++.++. ..+.+|+.+ .|++.|
T Consensus 210 -~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i-~P~l~G 285 (310)
T TIGR01272 210 -YLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAI-VPLLQG 285 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchH-HHHHHH
Confidence 333444444444443333333333446668899999999999888888887 4566777775 556788866 899999
Q ss_pred hhhhhhh
Q 037996 456 SLYDHQA 462 (535)
Q Consensus 456 ~l~~~~~ 462 (535)
.+.|..+
T Consensus 286 ~lad~~g 292 (310)
T TIGR01272 286 SLADCLG 292 (310)
T ss_pred HHHHhcc
Confidence 9999743
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-16 Score=158.47 Aligned_cols=347 Identities=13% Similarity=0.016 Sum_probs=199.4
Q ss_pred ccccHHHHHHcCCChhhhHHHHHhhhhccccccchhhhccccc-----chHHHHHHHHHHH-HHHHHHHHHHhcCCCChh
Q 037996 11 GTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITP-----TWFVLLVGSGMNF-AGYLMIWLAVTGKIAKPA 84 (535)
Q Consensus 11 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~ 84 (535)
....|.+++++|+|.++++...+...+...+.+++|+++||++ ||+.++++.++.. ++ .. .+ ...+ .+
T Consensus 46 ~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~--~~--~l-~~~~-~~ 119 (468)
T TIGR00788 46 LPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAIL--YG--LL-PGKV-SS 119 (468)
T ss_pred hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHH--HH--hc-cccc-ch
Confidence 3566788889999999998887777788778888999999998 7777777776652 22 11 11 2122 22
Q ss_pred HHHHHHHHHHhhcChhhHhhhhhhhHhhhcCCCCcchhhh---hHHhhhhhHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 037996 85 VWHMCAYICIGANSQNFANTGALVTCVKNFPESRGNMIGL---LKGFTGLSGAILTQVYLAVYGN-DSKSLILLIGWLPA 160 (535)
Q Consensus 85 ~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~---~~~~~~lg~~i~~~~~~~~~~~-~~~~~~~~~~~~p~ 160 (535)
.....+..++.+++.+...+++-.+..|..+++++...++ .....++|..+.+.+.+.+.+. ++...++..+..++
T Consensus 120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~l 199 (468)
T TIGR00788 120 AKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLL 199 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 3334457889999999999999999999997444333223 2332335554443333322222 11111111111111
Q ss_pred HHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHH
Q 037996 161 AISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREEL 240 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (535)
+. .+...+ .+|+.
T Consensus 200 l~-~~~~~~------------------------------------------------------------------~~E~~ 212 (468)
T TIGR00788 200 LQ-LFVSNL------------------------------------------------------------------SKERR 212 (468)
T ss_pred HH-HHHHHh------------------------------------------------------------------ccccc
Confidence 11 000000 11000
Q ss_pred hhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHh--hhh
Q 037996 241 AIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFG--GLG 318 (535)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~ 318 (535)
+ +..|...+ + + ... . ... .... .++.+..-...++.+++|..|......++ ...
T Consensus 213 ~-----~~~~~~~~--~--------~--~~~-~--~~~---~~~~-~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~ 268 (468)
T TIGR00788 213 A-----FVRPRIGT--Y--------L--EMN-M--ALL---TLGV-LANVKVQILGLRGAIQLLEIAKPLIFIFLSYANL 268 (468)
T ss_pred c-----cccccccc--c--------c--hhh-h--hhh---hhhH-HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhc
Confidence 0 00000000 0 0 000 0 000 0000 00000001234566778888764443333 212
Q ss_pred chhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-c---
Q 037996 319 SSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-F--- 394 (535)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~--- 394 (535)
......... +..+..|+++.+.+....+.+++.++|..+.+++.+|+ +.+..+.++.++.+++.+... .
T Consensus 269 ~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~------~~r~~l~~~~~l~~~~~~~~~~l~~~ 341 (468)
T TIGR00788 269 PGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF------PYRLLFGVTTLLYTLSSLFDLILVKR 341 (468)
T ss_pred CCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC------CHHHHHHHHHHHHHHHHhCceeeeec
Confidence 111111111 11245799999999999998888888888888777666 344556666666666543321 0
Q ss_pred -------cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 395 -------PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 395 -------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
++.+......++.+++.+..+.....++.+..|++..|+.+++.....++|..+ ++.++|.+.++.+
T Consensus 342 ~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v-~~~~gg~l~~~~g 415 (468)
T TIGR00788 342 WNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSV-SGFLGVLLMETIG 415 (468)
T ss_pred cccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 112234445677788888888888899999999999999999999999999977 9988888988754
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=153.50 Aligned_cols=342 Identities=13% Similarity=0.118 Sum_probs=209.7
Q ss_pred ccHHHHHHcCCChhhhHHH-HHhhhhccccccchhhhcc----cccchHHH-HHHHHHHHHHHHHHHHH-HhcCCCChhH
Q 037996 13 YSKDIKASLGYDQSTLNLL-GFFKDLGANVGVPSGLLGE----ITPTWFVL-LVGSGMNFAGYLMIWLA-VTGKIAKPAV 85 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~D----r~G~r~~~-~~g~~~~~~g~~~~~~~-~~~~~~~~~~ 85 (535)
+.+.+.+.+|+++..++.+ ...-.+..+..|+.|.++| |+|||+.. ++|.+...++..+++.. ..........
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 4566788899999999995 4444445556999999999 78976654 46778877776665422 1111111123
Q ss_pred HHHHHHHHHhhcChhhHhhhhhhhHhhhcC--CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 037996 86 WHMCAYICIGANSQNFANTGALVTCVKNFP--ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAIS 163 (535)
Q Consensus 86 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp--~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 163 (535)
..+++..++..++..+...+-.++..|..+ ++|.+..+.-..+..+|..+.+.+.. .+.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~------------------~l~- 164 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP------------------ILV- 164 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh------------------hhh-
Confidence 344566666788888888888888889885 57999999876666566544332211 111
Q ss_pred HHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhh
Q 037996 164 VIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIW 243 (535)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (535)
..... .+..+.+.....+ .++..++.... .....||
T Consensus 165 -------~~~g~----~~~~~~~~~~~~v---~~iv~~v~~~i-------------------------~~~~~ke----- 200 (428)
T PF13347_consen 165 -------SWFGG----GDTSNGYRWMALV---LAIVGLVFFLI-------------------------TFFFVKE----- 200 (428)
T ss_pred -------hhhcc----CccchHHHHHHHH---HHHHHHHHhhh-------------------------hhheeee-----
Confidence 00000 0000122211111 01000000000 0000010
Q ss_pred hcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhh
Q 037996 244 NLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTA 323 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 323 (535)
++++ . ++++++.+-....++.++||+++.+....++........
T Consensus 201 -----~~~~-----------------~--------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~ 244 (428)
T PF13347_consen 201 -----RSVE-----------------V--------------TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALM 244 (428)
T ss_pred -----cccc-----------------c--------------cccccccccccchhhhcccchHHHHHHHHHHHHhhhhhh
Confidence 0000 0 000111111234578889999988887777665554444
Q ss_pred hcchHHHHhhc-CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-c--cCcch
Q 037996 324 IDNLGQIGESL-GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-F--PFPGS 399 (535)
Q Consensus 324 ~~~~~~~~~~~-g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~--~~~~~ 399 (535)
....+++.+.. |.+ ...+.+..+..+...++.+++++++||+++|+ .+..+.++.+++.+.+. . .+.+.
T Consensus 245 ~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (428)
T PF13347_consen 245 NTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK------VYIIGLLLAALGFLLLFFLGPGSPWL 317 (428)
T ss_pred hhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee------ehhhhHHHHHHHHHHHHHHHhhhHHH
Confidence 44566666654 544 55667777888999999999999999998764 23344555555444332 2 36677
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhc-------cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFG-------LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
+++..++.|++.+..+....++.+|..+ ++..|..+|+.+....++..+ ++.+.+.+.+..
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~l-a~~i~g~~l~~~ 385 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGL-AGAIVGLLLALV 385 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHH-HHHHHHHHHHHh
Confidence 8888899999999988888888888765 456788999999999999977 888888887763
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=148.53 Aligned_cols=187 Identities=18% Similarity=0.221 Sum_probs=132.5
Q ss_pred cHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhh----cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccC
Q 037996 296 TILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGES----LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYK 371 (535)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~ 371 (535)
...+.+|+|++|.+.+......+....+-...+.+.+. .+.++...+.+.++.-+..++...+..++.+|+|.|
T Consensus 212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-- 289 (412)
T PF01306_consen 212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-- 289 (412)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--
Confidence 35678899999998765443333222222222223232 334445577788888888899999999999999654
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHH-hhhhhhHHHHH
Q 037996 372 MPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCG-QLASPLGSYIL 449 (535)
Q Consensus 372 ~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~ 449 (535)
..+.++..++.+=.+..+.. +++.+.+.-.+.++-.+.......-++.+.+++|..++.+.+. +...+++..+
T Consensus 290 ----~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i- 364 (412)
T PF01306_consen 290 ----NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIII- 364 (412)
T ss_dssp ----HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHH-
T ss_pred ----hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH-
Confidence 44555556666655566655 5667777788889888888777788999999999999999996 5777888877
Q ss_pred hHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037996 450 NVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTR 513 (535)
Q Consensus 450 ~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~ 513 (535)
.+.+.|.++|+.+ ++.+|++++++.+...+++.+..+..+
T Consensus 365 ~s~~~G~lyd~~G------------------------~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 365 LSPLAGYLYDRIG------------------------FQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HhhhHHhhHhhcC------------------------cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 6789999999976 888999999888777777776664433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=147.03 Aligned_cols=182 Identities=16% Similarity=0.065 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHhhhhchhhhhcchH-HHHhh-cCCCCcc------c---h-hhHHHHHHhhHHHHHHhhhhchhhhhccC
Q 037996 304 IDMLILFVATFGGLGSSLTAIDNLG-QIGES-LGYPTKT------I---K-SFVSLVSIWNYFGRVFAGFVSEGLLAKYK 371 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~g~~~~~------a---~-~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~ 371 (535)
+.+|.+++..++.|...+.+..+.+ ++.++ ++-++.+ . + +-...+++.+.+.+++..++.+|+++
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~--- 334 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA--- 334 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 5678888888888777665554444 44443 3332221 1 1 12223334444444444455555532
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc-c---C------------------cchHHHHHHHHHhhhcchhhHHHHHHHHhhcc-
Q 037996 372 MPRPLMLTLVLVLSCIGLLLIAF-P---F------------------PGSVYVASVIIGFSFGAQLPLIFAIISELFGL- 428 (535)
Q Consensus 372 ~~r~~~~~~~~~~~~i~~~~~~~-~---~------------------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~- 428 (535)
|+....++.++.++++....+ . + .+...+...++|+..+...++-++++++..++
T Consensus 335 --~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 335 --GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 234444555555555444321 1 1 14456677788999999999999999999984
Q ss_pred -CcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHH
Q 037996 429 -KYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 429 -~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
++.|...|+.|...-+.+.+ .....|.+.+..+ +.-..++.+.++..+++++++++
T Consensus 413 ~~~~G~~mgilN~~I~lpQii-~sl~~g~~~~~~g----------------------~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQII-VSLGSGPWDQLFG----------------------GGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred CCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHcC----------------------CCCeeHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999977 5567777544432 12456788888888888888888
Q ss_pred HHhhhh
Q 037996 508 LVIRTR 513 (535)
Q Consensus 508 l~~~~~ 513 (535)
+.++.+
T Consensus 470 ~~~~~~ 475 (477)
T TIGR01301 470 LLPRPR 475 (477)
T ss_pred hCCCCC
Confidence 777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=141.38 Aligned_cols=339 Identities=10% Similarity=-0.000 Sum_probs=177.9
Q ss_pred cHHHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhccc----ccchH-HHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 14 SKDIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEI----TPTWF-VLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 14 ~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr----~G~r~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
...+.+..|++...++.+....-+-- +.-|+.|.++|| +|||+ .++++.+.+.++..+++... ....+.....
T Consensus 33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~~s~~~~~~y 111 (460)
T PRK11462 33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-DLSMNGKMIY 111 (460)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-CCCcchHHHH
Confidence 34567788999999999544444444 458999999997 58865 45567677777765553221 1111122344
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC--CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP--ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp--~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
+++..++..++..+...+-.++..+.-+ ++|.+.+++-..+..+|+.+.+.+. .|++..
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~-----------------~plv~~-- 172 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM-----------------MPLVNL-- 172 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH--
Confidence 5556666678888887777777788774 6899999987766656554433111 122110
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
. . . .+....+.....+ .++..++ +. .+.....+|
T Consensus 173 ---~-g---~----~~~~~g~~~~~~i---~~ii~~i------------------------~~--~i~~~~~kE------ 206 (460)
T PRK11462 173 ---I-G---G----DNKPLGFQGGIAV---LSVVAFM------------------------ML--AFCFFTTKE------ 206 (460)
T ss_pred ---h-C---C----CchhhhHHHHHHH---HHHHHHH------------------------HH--HHHHhccee------
Confidence 0 0 0 0011111110000 0000000 00 000000000
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
++++ ++++.+ .....+..++||.++.+....++..........
T Consensus 207 ---~~~~--------------------------------~~~~~~--~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~ 249 (460)
T PRK11462 207 ---RVEA--------------------------------PPTTTS--MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGG 249 (460)
T ss_pred ---ccCC--------------------------------CccCCC--HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 000000 112346677888887776554433332222222
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccC--cchHHHH
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPF--PGSVYVA 403 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~ 403 (535)
...|+.+...-++...+.+.....++++++.+++++++||+++|+ ............+.+....+. ....++.
T Consensus 250 ~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (460)
T PRK11462 250 AMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-----IFWWTNALLAVISLAMFFVPMQASITMFVF 324 (460)
T ss_pred HhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 233333333212333445667778888999999999999997552 111112222222222222222 2233444
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhc-------cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFG-------LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
.++.|++.+...++..+++.|... .+..|..++.......+|..+ ++.+.|.+.+..
T Consensus 325 ~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~al-g~~i~g~iL~~~ 388 (460)
T PRK11462 325 IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAF-GGALIGWMLAYG 388 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 555677666655555666666544 445566667777788888866 888888888763
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=137.04 Aligned_cols=181 Identities=17% Similarity=0.224 Sum_probs=133.6
Q ss_pred cHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCc
Q 037996 296 TILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPR 374 (535)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 374 (535)
+++++.+.++.....+..+...-...........+.. ++|++..+..++....++..++|.++.|++.||++-|+
T Consensus 244 t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~---- 319 (438)
T COG2270 244 TFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKP---- 319 (438)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCce----
Confidence 4566666676666666555433222333333333444 78999999988888999999999999999999997542
Q ss_pred hHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHh
Q 037996 375 PLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVT 454 (535)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~ 454 (535)
.++....+...++...+.......++++..++|++.|...+..=++..+..|+++.++.+|+.++.+..+++. ||++.
T Consensus 320 -vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~-gp~lv 397 (438)
T COG2270 320 -VLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL-GPFLV 397 (438)
T ss_pred -eehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH-HHHHH
Confidence 2233333333444444444456678888899999999999999999999999999999999999999999966 99999
Q ss_pred HhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHH
Q 037996 455 GSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVS 505 (535)
Q Consensus 455 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~ 505 (535)
+.+.+. +++-+..+..+.++.+++.++.
T Consensus 398 ~v~t~i-----------------------Tg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 398 AVITQI-----------------------TGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred HHHHHH-----------------------hcchhhHHHHHHHHHHhhHhhE
Confidence 999888 4456777777777777665544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-12 Score=123.23 Aligned_cols=368 Identities=15% Similarity=0.076 Sum_probs=216.5
Q ss_pred HHHHHHcCCChhhhHHHHHhhhhccccccchhhhccccc-----chHHHHHHH-HHHHHHHHHHHHHHhcCCC-------
Q 037996 15 KDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITP-----TWFVLLVGS-GMNFAGYLMIWLAVTGKIA------- 81 (535)
Q Consensus 15 ~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~g~-~~~~~g~~~~~~~~~~~~~------- 81 (535)
-.|..|++++..-.+.+.....+.....+.+|..+|+.+ ||.-++++. .++..|..+...+..-...
T Consensus 4 RVMIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 4 RVMIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hhHHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 356778998888777765555555556899999999999 887665544 4444443333222111111
Q ss_pred ChhHHH--HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC-ChhHHHHHHHH
Q 037996 82 KPAVWH--MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN-DSKSLILLIGW 157 (535)
Q Consensus 82 ~~~~~~--l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~-~~~~~~~~~~~ 157 (535)
+...+. ..+.-.+.|+|.+..-++..+.++|..| |+|+++.++.....-+|..+.+.+.+.++++ +..+..-....
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 112332 2355667899999988889999999996 6899999998776634444433333333332 11111111111
Q ss_pred HHHHHHHHHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhh
Q 037996 158 LPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIR 237 (535)
Q Consensus 158 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (535)
++++..++ .+...++
T Consensus 164 ~a~i~~~l-----------------------------------------------------------------~~ia~wg 178 (403)
T PF03209_consen 164 VALIALLL-----------------------------------------------------------------NLIALWG 178 (403)
T ss_pred HHHHHHHH-----------------------------------------------------------------HHHHHHh
Confidence 11110000 0001112
Q ss_pred HHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhh
Q 037996 238 EELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGL 317 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 317 (535)
.|+.+++.. + ..++++......+++...+|+...+++..+...
T Consensus 179 -------~E~r~~~~~-~-----------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t 221 (403)
T PF03209_consen 179 -------QEPRRSRRA-A-----------------------------AAERPRPPFREAWRQVWASPQARRFFVFLFLGT 221 (403)
T ss_pred -------cccCCcccc-c-----------------------------CCCCCCccHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 211111110 0 000111111123455556666555544433332
Q ss_pred hchhhhhc-chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc--
Q 037996 318 GSSLTAID-NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-- 394 (535)
Q Consensus 318 ~~~~~~~~-~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-- 394 (535)
...++--. .=||=.+.+|++..+...+....+.+..+|..+.|++..|-.++ .| ....++....+++.++..
T Consensus 222 ~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~---~~--~a~~G~~~~~~~f~lii~a~ 296 (403)
T PF03209_consen 222 LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK---KR--TAALGCLLGALAFALIILAG 296 (403)
T ss_pred HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---hH--HHHHHHHHHHHHHHHHHHHH
Confidence 22221111 23455567899999999999999999999999999987742222 22 223455555555443322
Q ss_pred --cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCC
Q 037996 395 --PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMN 472 (535)
Q Consensus 395 --~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~ 472 (535)
.+.+.+....+++|++.|....-..+...++..+++.|...|.......++..+ +..+.|.+.|....-..
T Consensus 297 ~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Gl-g~~~GG~~~D~~~~~~~------ 369 (403)
T PF03209_consen 297 PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGL-GTFLGGALRDLVRALFG------ 369 (403)
T ss_pred hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc------
Confidence 256778888999999999887777788899999999999999999999888866 88888888886432211
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHHHHH
Q 037996 473 RSDVKELICIGVKCYRLPFIILACVTCFGALV 504 (535)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l 504 (535)
+ .....|...|.+=+++.++++.+
T Consensus 370 ---~-----~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 370 ---N-----SPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred ---C-----CcchHHHHHHHHHHHHHHHHHHH
Confidence 0 01335888887776666555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-13 Score=131.00 Aligned_cols=341 Identities=13% Similarity=0.081 Sum_probs=205.3
Q ss_pred HHHHHcCCChhhhHHHHHhhhhcc-ccccchhhhcccc----cch-HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 037996 16 DIKASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEIT----PTW-FVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMC 89 (535)
Q Consensus 16 ~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~----G~r-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 89 (535)
.+.+.+|++...++.+....=+-- +.-|+.|.+.||. ||| +-++.+.+.+++.+.+++...- ...+.+....+
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~-~~~~~k~~ya~ 116 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD-FSMTGKLIYAL 116 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC-cccCcchHHHH
Confidence 456789999999998555444444 4489999999985 654 4666777777777666644321 11123445566
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhc--CCCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 90 AYICIGANSQNFANTGALVTCVKNF--PESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~f--p~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
+-.++.+++...++.+-.++.++.- |+||.+..+.-..+..+|..+...+.. |++.. .
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~-----------------plv~~-~-- 176 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFP-----------------PLVKL-F-- 176 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-h--
Confidence 7778888999888877777777777 468999999977766666655432211 21111 1
Q ss_pred hhhcccCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLY-ASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
. . .+....+..... +++++.+. .+.+..-.+|
T Consensus 177 ---g---~----~~~~~g~~~~~~~~~vi~~i~-----------------------------~l~~~~~v~E-------- 209 (467)
T COG2211 177 ---G---G----GDKALGYQGTALVLGVIGVIL-----------------------------LLFCFFNVKE-------- 209 (467)
T ss_pred ---C---C----CcchhhHHHHHHHHHHHHHHH-----------------------------HHHHHHHhhc--------
Confidence 1 0 000111211000 00000000 0001101111
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDN 326 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
++.+..+ .+...+.+....+...++||++..+.+...+.+.........
T Consensus 210 --R~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~ 258 (467)
T COG2211 210 --RVVETQP-----------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSI 258 (467)
T ss_pred --ccCcccc-----------------------------CcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhh
Confidence 1111000 000011111123346789999988888777666655444444
Q ss_pred hHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-c--CcchHHH
Q 037996 327 LGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-P--FPGSVYV 402 (535)
Q Consensus 327 ~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~--~~~~~~~ 402 (535)
..|+.+. .|.++............+..++.+++.++++|+|+| ..+.++.++.+++.+.+.+ + +....++
T Consensus 259 ~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk------~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~ 332 (467)
T COG2211 259 MVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK------KLFLIGLLLLAVGYLLLYFTPAGSVVLIVV 332 (467)
T ss_pred hheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH------HHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence 4555443 466666677777777777888899999999999655 4555666666666555443 2 3445566
Q ss_pred HHHHHHhhhcchhhHHHHHHHHhh-------ccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 403 ASVIIGFSFGAQLPLIFAIISELF-------GLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 403 ~~~l~g~~~g~~~~~~~~~~~~~~-------~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
..++.+++.+...++..+.++|.. +.+.-|..++....+.-+|..+ +..+.|+..+..+
T Consensus 333 ~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al-a~~~~g~~L~~~G 398 (467)
T COG2211 333 ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL-AGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 668888888888888888777654 3567888999999998888866 7788888887643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-11 Score=120.15 Aligned_cols=377 Identities=12% Similarity=0.081 Sum_probs=204.0
Q ss_pred ccHHHHHHcC----CChhhhHH-HHHhhhhccccccchhhhcccc-cchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 13 YSKDIKASLG----YDQSTLNL-LGFFKDLGANVGVPSGLLGEIT-PTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 13 ~~~~l~~~~~----~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.-++..+++ .|+++..- .+.+..+.+....++|+++||+ |+|++++.|.+++++|.++++.. + . ....
T Consensus 44 L~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~--~-~--~~~~ 118 (498)
T COG3104 44 LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS--S-V--SGPG 118 (498)
T ss_pred HHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc--c-c--cccc
Confidence 3445556666 88887766 7888888888899999999998 99999999999999998887432 2 0 1245
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcCC---CCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFPE---SRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAIS 163 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~---~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 163 (535)
.+++.-++.++|.|..-+-...++.|.+|+ ||-...++...+..+|+.+.+.+...+-....+..-+-++.+-....
T Consensus 119 gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~g 198 (498)
T COG3104 119 GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIG 198 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 577777777799999999999999999953 46666777777777887665555544444444555555555555555
Q ss_pred HHHHhhhcccCCCCC---Ccch-hhHHHHHHHHHHHHHHHHHH-HHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhH
Q 037996 164 VIFVYTIRIIPVVQH---TSHE-AKVFYHFLYASIVLALFLMV-MTILEKVMSFPREAYAASATGCIVLLFVPLAIAIRE 238 (535)
Q Consensus 164 ~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (535)
++..++.+..-.+.. +... +..........+...+.... ... .+++.-...+ .......+...+ .+
T Consensus 199 l~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~--~~~~i~~~~~~~-~~ 269 (498)
T COG3104 199 LVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL------LNQNTFSGVL--LVISILIAIIYF-AE 269 (498)
T ss_pred HHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHH-HH
Confidence 554444332211000 0111 11111000000000000000 000 0001100000 111111111111 10
Q ss_pred HHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhh
Q 037996 239 ELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLG 318 (535)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 318 (535)
..+ .++..++ .++.+ .+..+++.....|.
T Consensus 270 ~~~----------------------------------------------~~~~~~e--r~r~~---~~~~Lfl~~~iFW~ 298 (498)
T COG3104 270 AFR----------------------------------------------SPKVFDE--RRRLL---AAIPLFLFAVIFWA 298 (498)
T ss_pred Hhc----------------------------------------------cCccHHH--HHHHH---HHHHHHHHHHHHHH
Confidence 000 0000000 01111 11111111111111
Q ss_pred chhhhhcchHHHH---hhcC-C-CCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH-HHHHHHHHHHHHHHH
Q 037996 319 SSLTAIDNLGQIG---ESLG-Y-PTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM-LTLVLVLSCIGLLLI 392 (535)
Q Consensus 319 ~~~~~~~~~~~~~---~~~g-~-~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~-~~~~~~~~~i~~~~~ 392 (535)
......+.+..+. .+++ . -+-..+++-++..+.-++.+++..++..|++++++.++.+. +..+..+++.+++++
T Consensus 299 ~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l 378 (498)
T COG3104 299 LYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLIL 378 (498)
T ss_pred HHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 1111111111111 1222 1 12234566677777777777777788777666644333332 345666666666554
Q ss_pred hc-----c------CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhH
Q 037996 393 AF-----P------FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTG 455 (535)
Q Consensus 393 ~~-----~------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g 455 (535)
.. . +.++++...++.+++-=+..++..+.+.+..|++-.+..++........+..+ +..+.+
T Consensus 379 ~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l-~g~va~ 451 (498)
T COG3104 379 LLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL-GGQVAG 451 (498)
T ss_pred HHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-hceecc
Confidence 32 1 23566777888899888888888899999999999999999888888877765 655554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=127.59 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=154.2
Q ss_pred HHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHH
Q 037996 305 DMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVL 384 (535)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 384 (535)
..+.+.++.|+.....+.....+|.+.+++|++..+++.+.+.++.+..++.++...+.||+ +||.++.....+
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~------~Rr~lLl~~l~l 87 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL------ERRRLLLGLLAL 87 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHHHH
Confidence 34666667777677777788899999999999999999999999999999999999999999 555677777888
Q ss_pred HHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhh
Q 037996 385 SCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAV 463 (535)
Q Consensus 385 ~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~ 463 (535)
+.++.++.... ++..+.+..++.|+..|..+++..++..++.|+++|+++.+++.+...++..+ |.+++.++-|..+
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~-GvPLGt~ig~~~G- 165 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL-GVPLGTFLGQLFG- 165 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH-hccHHHHHHHHhh-
Confidence 88887776654 78889999999999999999999999999999999999999999999999966 9999999999866
Q ss_pred hHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 464 KELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
||.+|.+.+++.+++.+..+...+
T Consensus 166 -----------------------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 -----------------------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999888776666555
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=134.28 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHH
Q 037996 305 DMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVL 384 (535)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 384 (535)
.++..++..++.+.....+....+.+.+++|+++.+.+++.+...++..++++++|+++||+++| ..+.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~~~~~~~~ 97 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR------YFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc------hhHHHHHHH
Confidence 33344444444433333444567788888999999999999999999999999999999999654 455666777
Q ss_pred HHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhh
Q 037996 385 SCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAV 463 (535)
Q Consensus 385 ~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~ 463 (535)
..++.++.... +.+.+++..++.|++.|..++....++.|.+|+++|+++.|+.+....+|..+ +|.+.+.+.+..+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g- 175 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL-IPLVVGAIALHYG- 175 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc-
Confidence 77766665544 45566666778888888888888899999999999999999999999999976 9999998887643
Q ss_pred hHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 464 KELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
|+..|.+.+++.++..++..+.
T Consensus 176 -----------------------w~~~f~~~~i~~~~~~~~~~~~ 197 (434)
T PRK11663 176 -----------------------WRYGMMIAGIIAIVVGLFLCWR 197 (434)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877665554444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=132.31 Aligned_cols=180 Identities=17% Similarity=0.102 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHH
Q 037996 302 LSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLV 381 (535)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 381 (535)
+++.++...+...........+....|++. +.|+++.+.++..+...++..++.++.|+++||+++|+ .+..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~------~~~~~ 97 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV------FLPAG 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce------ehHHH
Confidence 344444444443333332222344556664 46999999999999999999999999999999997653 34445
Q ss_pred HHHHHHHHHHHhcc-----CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHh
Q 037996 382 LVLSCIGLLLIAFP-----FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGS 456 (535)
Q Consensus 382 ~~~~~i~~~~~~~~-----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~ 456 (535)
.++.+++.+.+... +...+++..++.|++.+..++.....+.|.+|+++|+++.|+.+....+++.+ +|.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~ 176 (438)
T TIGR00712 98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLL 176 (438)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHH
Confidence 55555555444321 22344556678888888888888888999999999999999999999998866 7777776
Q ss_pred hhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 457 LYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
..+.. .+|+..|++.++++++..++..++.++.
T Consensus 177 ~~~~~-----------------------~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 177 GMAWF-----------------------NDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHh-----------------------hhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 55431 2399999998888877666555555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=125.23 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=133.5
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccC-cchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPF-PGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 401 (535)
+....|++.++.++|..+.+.+.+.+.+...++.++.|.++||.+.| ..+..++++.++..+++.+.+ ...+.
T Consensus 48 F~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr------~fm~~gLilsai~nil~Gfs~s~~~~~ 121 (448)
T COG2271 48 FNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR------YFMAFGLILSAIVNILFGFSPSLFLFA 121 (448)
T ss_pred HhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc------eeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45567788888889999999999999999999999999999999533 567788888888888887764 45566
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHh--HhhhhhhhhhHhhhhcCCCCCcccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVT--GSLYDHQAVKELAKKGMNRSDVKEL 479 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~--g~l~~~~~~~~~~~~~~~~~~~~~~ 479 (535)
+...+.|++-|..+|.+...+..-+++++||+..++.|+..++|+.+ .|++. +++.++.
T Consensus 122 ~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal-~~~~~~la~~~~~~------------------ 182 (448)
T COG2271 122 VLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL-APLVALLAFFAFHG------------------ 182 (448)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch-HHHHHHHHHHHhcc------------------
Confidence 77788899999999999999999999999999999999999999988 77888 7776663
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 480 ICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
+|+..|++-+++.++..++.+++.+.
T Consensus 183 ------~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 183 ------GWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 39999999998888777666665543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-12 Score=126.20 Aligned_cols=173 Identities=14% Similarity=0.187 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHH
Q 037996 304 IDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLV 383 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 383 (535)
+.++.+.+..+.............|.+.+++|.+..+.++..+...++..++.+++|+++||+++| ..+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK------HILLFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH------HHHHHHHH
Confidence 345555555554444444556677888889999999999999999999999999999999999644 55666777
Q ss_pred HHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 384 LSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 384 ~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
+.+++.++.... +.+.+++..++.|++.+...+....++.|.+++++++.+.++......++..+ +|++.+.+.+..+
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~g 155 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL-GIPLGTYLSQEFS 155 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH-hccHHHHHhhhcc
Confidence 777776666554 56778888899999998888888888999999889999999999888999976 9999888877633
Q ss_pred hhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHH
Q 037996 463 VKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
|+..|.+.+++.++..+....
T Consensus 156 ------------------------wr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 156 ------------------------WRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776665544433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=126.59 Aligned_cols=156 Identities=23% Similarity=0.303 Sum_probs=127.8
Q ss_pred hhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchH
Q 037996 323 AIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSV 400 (535)
Q Consensus 323 ~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~ 400 (535)
.....+ ++.+++|.++.+.+++.+...++..++.++.|+++||+++| ..+..+.++.+++.++..+ .+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR------RVLIIGLLLFALGSLLLAFASNFWLL 88 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH------HHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe------eeEeehhhhhhhHHHHhhhhhhHHHH
Confidence 334455 67778899999999999999999999999999999999654 4566777777777444434 555677
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
++..++.|++.+...+....++.|.+|+++|++++++......+|..+ +|.+.+.+.+..+
T Consensus 89 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~~------------------ 149 (352)
T PF07690_consen 89 LIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSIL-GPLLGGFLISYFG------------------ 149 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHCH------------------
T ss_pred hhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhc-ccchhhhhhhccc------------------
Confidence 888899999999999999999999999999999999999999999976 9999999987644
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
|+..|++.+++.+++.++..++.
T Consensus 150 ------~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 150 ------WRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp ------HCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ------cccccccccchhhhhhhhHhhhh
Confidence 88999999988888876433333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-12 Score=127.09 Aligned_cols=181 Identities=13% Similarity=0.165 Sum_probs=135.2
Q ss_pred HHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHH
Q 037996 307 LILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSC 386 (535)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 386 (535)
+..++.+++.+..........+.+.+++|.+..+.++..+.+.++..++.+..|+++||+|+| ..+..+.++..
T Consensus 11 ~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r------~~~~~~~~~~~ 84 (412)
T TIGR02332 11 IFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR------RWIAGIMVLWG 84 (412)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH------HHHHHHHHHHH
Confidence 333344444333333334455677788999999999999999999999999999999999654 45666777777
Q ss_pred HHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhH
Q 037996 387 IGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKE 465 (535)
Q Consensus 387 i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~ 465 (535)
++.++.... +.+.+++..++.|++.+...+....++.|.+|+++|+++.|+.+....+|..+ +|.+.+++.+.....
T Consensus 85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~- 162 (412)
T TIGR02332 85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL-GLILSGYILALDGLM- 162 (412)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCC-
Confidence 776666554 56778888999999999988888889999999999999999999999999966 999988886531000
Q ss_pred hhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 466 LAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
...+|+..|++.++..++..++..++.+|+
T Consensus 163 -----------------~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~ 192 (412)
T TIGR02332 163 -----------------ALKGWQWLFLLEGFPSVILGVMTWFWLDDS 192 (412)
T ss_pred -----------------CccchhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 012499999998777766555554544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=125.37 Aligned_cols=152 Identities=10% Similarity=0.081 Sum_probs=125.1
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
...|.+.+++|.++.+.++..+.+.++..++.+..|+++||++|| ..+..+.++..++.+..... +.+.+++.
T Consensus 30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (390)
T PRK03545 30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR------KLLIGLFVLFIASHVLSALAWNFTVLLIS 103 (390)
T ss_pred cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 456788889999999999999999999999999999999999654 55666677777766665544 66777788
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.++.|++.+...+...+++.|.+|+++|+++.|+......++..+ +|++.+.+.+..+
T Consensus 104 r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~i-g~~l~~~l~~~~g--------------------- 161 (390)
T PRK03545 104 RIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVL-GLPLGRVIGQYLG--------------------- 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHH-HhhHHHHHHHHhc---------------------
Confidence 888899888878888899999999999999999999999999977 9999988877643
Q ss_pred cccchHHHHHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
|+..|++.++++++..++...
T Consensus 162 ---w~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 162 ---WRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877666554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.9e-12 Score=125.99 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=128.3
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchH
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSV 400 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~ 400 (535)
.+....|.+.+++|.++.+.++..+...++..++.++.|+++||++|| ..+..+.++..++.+..... +.+.+
T Consensus 23 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (385)
T TIGR00710 23 MYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR------PVLLLGLFIFALSSLGLALSNNIETL 96 (385)
T ss_pred HhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh------HHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 344567788889999999999999999999999999999999999644 45556666666666555443 55667
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
++..++.|++.+...+...+++.|.+|+++|++++|+.+....++..+ +|.+.+.+.+..+
T Consensus 97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~------------------ 157 (385)
T TIGR00710 97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAV-APLLGGYILVWLS------------------ 157 (385)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC------------------
Confidence 778889999999888999999999999999999999999999999976 9999998877643
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|.+.+++.++..++..+..++
T Consensus 158 ------~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (385)
T TIGR00710 158 ------WHAIFAFLSLAGILLSALIFFILPE 182 (385)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8889988887777666655544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=125.48 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHhhhhchhhhhcc-hHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHH
Q 037996 304 IDMLILFVATFGGLGSSLTAIDN-LGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVL 382 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 382 (535)
|+++.+.+..++........... ++++.+++|+++.+.++..+...+...++++..|+++||+++| ..+..+.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k------~~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK------RYMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc------hhHHHHH
Confidence 34566666555544443333433 4455567899999999999999999999999999999999765 3444555
Q ss_pred HHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 383 VLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 383 ~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
++..++.+.+... +.+.+++...+.|.+.+...+....+..|.+|+++|++++|+.+...++|..+ +|.+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i-gp~l~~~l~~~- 158 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV-GPPLGTLLVMQ- 158 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-
Confidence 5555655555444 44445555556666666666778889999999999999999999999999976 99999987642
Q ss_pred hhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 462 AVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
+ |+..|.+.+++.+++.++..+..+|.
T Consensus 159 g------------------------~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 159 S------------------------INLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred c------------------------cCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 88899888877777655554444333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=124.49 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=124.5
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchH
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSV 400 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~ 400 (535)
......+.+.+++|.++.+.++..+...++..+++++.|+++||++|| ..+..+.++.+++.+..... +.+.+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR------YVVILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH------HHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 344567778889999999999999999999999999999999999644 55666666666666555544 56788
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
++..++.|++.+...+....++.|.+|+++|+.+.++.....+++..+ +|.+.+.+.+..+
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~~~l~~~~g------------------ 172 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI-AAPLGSFLGELIG------------------ 172 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC------------------
Confidence 888999999999989999999999999999999999999999999976 9999999887643
Q ss_pred ccccccchHHHHHHHHHHHHHH
Q 037996 481 CIGVKCYRLPFIILACVTCFGA 502 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~ 502 (535)
|+..|++.+++.++..
T Consensus 173 ------w~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 173 ------WRNVFNAAAVMGVLCI 188 (394)
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 8999988776655443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-13 Score=143.10 Aligned_cols=383 Identities=13% Similarity=0.044 Sum_probs=3.0
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCC----------
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKI---------- 80 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~---------- 80 (535)
.....+|++|+++.+|.+++.+.+-++.++ .++..++.+|..|-+.+-+|.+++++|.++.++= ++.
T Consensus 24 ~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP--hf~~~~y~~~~~~ 101 (539)
T PF03137_consen 24 SSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP--HFLSGPYSYEEAS 101 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc--HhhcCCCcccccc
Confidence 445689999999999999999999998875 8888999999999999999999999998876531 100
Q ss_pred ---------------------------------CCh--hHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhh
Q 037996 81 ---------------------------------AKP--AVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGL 124 (535)
Q Consensus 81 ---------------------------------~~~--~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~ 124 (535)
... -+..+++..++.|+|....++...+++-|+.+ ++-+...|+
T Consensus 102 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi 181 (539)
T PF03137_consen 102 NSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI 181 (539)
T ss_dssp --------------------------------------------------SSS---------------------------
T ss_pred ccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh
Confidence 001 13456688999999999999999999999995 578888888
Q ss_pred hHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCcchhhHHHHHHHHHHHHH
Q 037996 125 LKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVV-------QHTSHEAKVFYHFLYASIVLA 197 (535)
Q Consensus 125 ~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 197 (535)
..+...+|.++. .+.++.+.. +.+.....+ +.+.+|-.+|| +.++...
T Consensus 182 ~~~~~~lGPa~G-f~lg~~~L~---------------------~yvD~~~~~~~~~~i~p~dp~WvGAWW-LGfli~g-- 236 (539)
T PF03137_consen 182 LYAMSILGPALG-FLLGSFCLR---------------------IYVDFPKVPPDGVGITPSDPRWVGAWW-LGFLICG-- 236 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHhhccHHHH-HHHHHHHHh---------------------ceeCCccccccCCCCCCCCccHHHHHH-HHHHHHH--
Confidence 877766665442 222211100 000111000 00111111222 1111110
Q ss_pred HHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCC
Q 037996 198 LFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGS 277 (535)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (535)
.+.++..+|+..+-|+-... ++ ..++++..+.++++ +.. ++.++
T Consensus 237 -------------------------~~~~l~aipl~~FPk~lp~~-~~-------~~~~~~~~~~~~~~--~~~-~~~~~ 280 (539)
T PF03137_consen 237 -------------------------ILLFLSAIPLFFFPKKLPGT-SE-------RQEEKESSERKEED--SDK-DSFKD 280 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------HHHHHHHHHHHcCCccCCCc-cc-------ccchhhhhhcchhh--hhh-hcccc
Confidence 11122223333322211110 00 00000000000000 000 00000
Q ss_pred CccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc-chHHHHhhcCCCCccchhhHHHHHH-hhHHH
Q 037996 278 TKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID-NLGQIGESLGYPTKTIKSFVSLVSI-WNYFG 355 (535)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~a~~~~~~~~i-~~~ig 355 (535)
++ ..+...+..+.-....+++++||.|....+...........+.. .+.|+-++++.++++++++.....+ +.++|
T Consensus 281 ~~--~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G 358 (539)
T PF03137_consen 281 PK--SKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALG 358 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc--cccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhhee
Confidence 00 00000011112234678899999998887766655444444444 4455545779999999998876655 67899
Q ss_pred HHHhhhhchhhhhccCCCchHHHHHHHHHHHHH---HHHHhcc---------Cc--------------------------
Q 037996 356 RVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIG---LLLIAFP---------FP-------------------------- 397 (535)
Q Consensus 356 ~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~---~~~~~~~---------~~-------------------------- 397 (535)
.+++|++..|+.-+.+..-++.++ ..++..+. .+++.-+ .+
T Consensus 359 ~llGG~ivkk~kl~~~~~~~~~~v-~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~ 437 (539)
T PF03137_consen 359 ILLGGYIVKKFKLSARGAAKFCIV-VSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGS 437 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hheEEEEEEEecCcHHHHHHHHHH-HHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCccc
Confidence 999999999885332111112221 22222211 1111000 00
Q ss_pred -----------chHHHH---HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 398 -----------GSVYVA---SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 398 -----------~~~~~~---~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
..++.. .++.-+..+........++-+.+++++|+.+.|+..+...+-+.+=+|+++|.+.|+
T Consensus 438 a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 438 ATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 001111 112222223333344456678899999999999999887766667799999999997
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=126.91 Aligned_cols=176 Identities=15% Similarity=0.198 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHH
Q 037996 304 IDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLV 383 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 383 (535)
+.+|.++...++.......+....|.+.+++|.++.+.++..+.+.++..++.+++|+++||+++| ..+..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r------~~~~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR------NIFFTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH------HHHHHHHH
Confidence 456777776666555555556678888899999999999999999999999999999999999755 33445555
Q ss_pred HHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 384 LSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 384 ~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
+..++.+..... +.+.+++..++.|++.+...+.....+.|.+|++++++++|+......++..+ +|.+.|.+.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~g~l~~~~g 162 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL-GPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhhcc
Confidence 555555444443 55667788899999999988899999999999999999999999999999976 9999999988643
Q ss_pred hhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 463 VKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
|++.|.+...+..++.++.....+
T Consensus 163 ------------------------w~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 163 ------------------------WHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899998887777766665554433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-12 Score=127.82 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=126.1
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
+....|++.+++|.++.+.+++.+...++..++.++.|+++||++||+ .+..+.++..++..++... +.+.++
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK------TLAVFIVIWGVFTGLQAFAGAYVSLY 86 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcce------eeHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 334566777888999999999999999999999999999999997654 3344555555555554433 667788
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+....++.|.+|+++|+++.++......+|..+ +|.+.+.+.+..+
T Consensus 87 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------- 146 (399)
T TIGR00893 87 ILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII-GGPLVGWILIHFS------------------- 146 (399)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHhCC-------------------
Confidence 88899999999989999999999999999999999999999999977 9999988877643
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
|+..|.+.+++.++..++..+..+
T Consensus 147 -----~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 147 -----WQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred -----chHHHHHHHHHHHHHHHHhhheec
Confidence 899998887777666555544443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=128.45 Aligned_cols=159 Identities=15% Similarity=0.232 Sum_probs=130.9
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.....|.+.+++|.++.+.++..+.+.++..++.++.|+++||++|| ..+..+.++..++.++.... +...++
T Consensus 21 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (485)
T TIGR00711 21 VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR------RLFLISTFAFTLGSLLCGVAPNLELMI 94 (485)
T ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH------HHHHHHHHHHHHHHHHHhCcCCHHHHH
Confidence 44567888889999999999999999999999999999999999644 45666777777776666554 566777
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+....++.|.+|+++|+.+.++......+|..+ +|.+.+++.++.+
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~~------------------- 154 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPAL-GPTLGGWIIENYH------------------- 154 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh-hhccHhHhccCcC-------------------
Confidence 88889999999888999999999999999999999999999999976 9999999887643
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
|++.|++.+.+.++..++..+..++.
T Consensus 155 -----w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 155 -----WRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred -----ceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 89999888777776666555554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.7e-13 Score=128.58 Aligned_cols=176 Identities=13% Similarity=0.165 Sum_probs=140.1
Q ss_pred HHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHH
Q 037996 310 FVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGL 389 (535)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~ 389 (535)
++.......--+.+....+...+.++.+++..+++.+.+.+..++.+++.|++.||+ +|++++.++..+-.++.
T Consensus 39 ~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry------NR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 39 CLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY------NRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc------CcceEEeeHHHHHHHHH
Confidence 333434444333444455566667799999999999999999999999999999999 55566777777777776
Q ss_pred HHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhh
Q 037996 390 LLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAK 468 (535)
Q Consensus 390 ~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~ 468 (535)
+...+. ..|.+.++..+.|+|-+...++.+++++|.++.++|+..+++.++...+|+.+ |-.+.+.+.++
T Consensus 113 ~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl-G~vvgs~va~~-------- 183 (493)
T KOG1330|consen 113 FASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL-GYVVGSVVASL-------- 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce-eEEeeeeeccC--------
Confidence 665555 46888899999999999999999999999999999999999999999999955 74444444444
Q ss_pred hcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 037996 469 KGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREF 515 (535)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~ 515 (535)
...||++|+..+++.++..++.+++.++.+|.
T Consensus 184 ---------------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 184 ---------------TFWWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred ---------------ccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 33499999999999999998888887766653
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-11 Score=129.07 Aligned_cols=163 Identities=15% Similarity=0.148 Sum_probs=121.3
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
..+|.+.++.|++..+.+++.++..++.++|.+++|+++||+||| ..+.++.++..++.++..+. +.+.+++.
T Consensus 188 ~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR------~~lii~lil~~i~~ll~afa~s~~~llv~ 261 (742)
T TIGR01299 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK------QCLLICLSVNGFFAFFSSFVQGYGFFLFC 261 (742)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 356667778899999999999999999999999999999999654 45555666666555555443 56778888
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.++.|++.+...+..+.++.|.+|++.||...++..+...+|.++ ++.++..+....+.... ....+.
T Consensus 262 R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il-a~~la~~il~~~G~~~~-----------~g~~~~ 329 (742)
T TIGR01299 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY-AAAMAWAIIPHYGWSFQ-----------MGSAYQ 329 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhc-----------cccccc
Confidence 999999999999999999999999999999999999999999966 87776666543221000 000111
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGALVS 505 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~ 505 (535)
..+|+..+++.++..+++.++.
T Consensus 330 ~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 330 FHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 2358988887766665554433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=123.21 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=124.3
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.....+++.+++|.++.+.+++.++..++..++.++.|+++||+++| ..+..+.++..++.++.... +.+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (398)
T TIGR00895 36 MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK------RVLLWSILLFSVFTLLCALATNVTQLL 109 (398)
T ss_pred HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 44567778788899999999999999999999999999999999654 44555666666665555444 556677
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+...+++.|.+|+++|+++.++......+|..+ +|.+.+.+.+..+
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g------------------- 169 (398)
T TIGR00895 110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV-GGFLAGWLIPVFG------------------- 169 (398)
T ss_pred HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH-HHHHHHHHhhccc-------------------
Confidence 78889999999989999999999999999999999999999999976 9999988887643
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
|+..|.+.+++.++..++.....+
T Consensus 170 -----~~~~~~~~~~~~~~~~~~~~~~~~ 193 (398)
T TIGR00895 170 -----WRSLFYVGGIAPLLLLLLLMRFLP 193 (398)
T ss_pred -----ceeehhhhhhHHHHHHHHHHHhCC
Confidence 788888776555555554444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=120.96 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=115.8
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.....+.+.+++|++..+.++..+...++..++.++.|+++||+++| ..+..+.++.+++.++.... +...++
T Consensus 55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r------~~~~~~~~~~~~~~~~~~~~~s~~~l~ 128 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR------YGSAFLLMLTAPAVFCMSLVSSATGFI 128 (476)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34456778888999999999988889999999999999999999654 44555666666666555544 555666
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+... ....++.|.+|+++||.+.|+.+....+|..+ ++.+.+.+.+...... +
T Consensus 129 ~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~-~~~~~~~i~~~~~~~~---------------~ 191 (476)
T PLN00028 129 AVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV-TQLLMPLVFPLIKDAG---------------A 191 (476)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcC---------------C
Confidence 77788888877543 34567889999999999999998877777755 6666655443211000 0
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
.+..+|+..|++.+++.++..++..++.
T Consensus 192 ~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 192 PSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 0012499999998888776665554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-12 Score=126.91 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=123.1
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
+....+++.+++|.++.+.+++.+...++..++.++.|+++||+++| ..+..+.++..++.+++... +.+.++
T Consensus 14 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (379)
T TIGR00881 14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR------VFLPIGLILCAIVNLFFGFSTSLWVMA 87 (379)
T ss_pred hhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe------ehhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34456777788899999999999999999999999999999999765 34556666666666555544 566777
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHh-HhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVK-VTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~-i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
+..++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..+ +|. +.+.+.+..
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~------------------- 147 (379)
T TIGR00881 88 ALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELY------------------- 147 (379)
T ss_pred HHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcC-------------------
Confidence 88889999999888999999999999999999999999999999976 874 444444432
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
+|+..|++.+++.++..++..++.++
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 148 -----SWHWVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred -----CchhHHHHHHHHHHHHHHHHheeeCC
Confidence 38888888877776655555544443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-11 Score=119.95 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=115.0
Q ss_pred HHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHH
Q 037996 307 LILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSC 386 (535)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 386 (535)
...++..+.............+.+.+++|.++.+.+++.+...++..++.++.|+++||+||| ..+..+.++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r------~~~~~~~~~~~ 88 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR------LPMVTSIVLFS 88 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHH
Confidence 344444444333333344456677788899999999999999999999999999999999654 44555666666
Q ss_pred HHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 387 IGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 387 i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
++.++.... +.+.+++..++.|++.+...+...+++.|.+|+++|+.+.++......+|..+ +|.+.+.+.+.
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~~l~~~ 162 (405)
T TIGR00891 89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV-AAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 665555443 56677788899999999988889999999999999999999999999999966 88888887765
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=122.98 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=126.3
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchH
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSV 400 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~ 400 (535)
.+....|.+.++.|.++.+.++..+.+.++..++.++.|+++||++|| ..+..+.++..++...+... +.+.+
T Consensus 21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r------~~l~~~~~~~~i~~~~~~~~~~~~~~ 94 (392)
T PRK10473 21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK------PVAIPGAALFIIASLLCSLAETSSLF 94 (392)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh------HHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 444567888888999999999999999999999999999999999654 44556666666666555544 44566
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
++..++.|++.+...+....++.|.+++++|+++.++.+....++..+ +|.+.+.+.+..+
T Consensus 95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~i~~~l~~~~g------------------ 155 (392)
T PRK10473 95 LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVL-APVLGHLIMLKFP------------------ 155 (392)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcC------------------
Confidence 677788899888888888899999999999999999999988888866 8888887766532
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
|+..|++.+++.++..++..+..+++
T Consensus 156 ------~~~~~~~~~~~~~i~~~~~~~~~~~~ 181 (392)
T PRK10473 156 ------WQSLFYTMAAMGILVLLLSLFILKET 181 (392)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88999888887777766655554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=124.82 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=128.1
Q ss_pred HHHHHHHHHhhhhchhhhhcchHHHHh-h--cCCCCccchhhHHHHHHhhHHHHHHhhhhchh-hhhccCCCchHHHHHH
Q 037996 306 MLILFVATFGGLGSSLTAIDNLGQIGE-S--LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEG-LLAKYKMPRPLMLTLV 381 (535)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~~~~~~ 381 (535)
+|.+++..++.-...+....+++.+.+ + +|+++.+++...+.+.+...++++++|+++|| +|+| ..+..+
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~------~~l~~~ 85 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK------KTMVLG 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH------HHHHHH
Confidence 455554444433333334444555544 4 79999999999999999999999999999999 7544 566677
Q ss_pred HHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCc---ccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 382 LVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKY---YSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 382 ~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
.++.+++.+++... +.+.+++...+.|++.|...+...+.+.|.+|+++ |++++++.+...++|..+ +|.+.+++
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i-g~~l~g~l 164 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI-SPLLAGVI 164 (475)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH-HHHHHHHH
Confidence 77777777776655 44556667778899998888888999999998754 888999999999999977 99999999
Q ss_pred hhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHH
Q 037996 458 YDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALV 504 (535)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l 504 (535)
.++.+ |+..|.+.++..+++.+.
T Consensus 165 ~~~~g------------------------~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 165 AENYG------------------------YHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHhcC------------------------hHHHHHHHHHHHHHHHHH
Confidence 87643 899998877666555433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=123.02 Aligned_cols=154 Identities=12% Similarity=0.018 Sum_probs=119.7
Q ss_pred hcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-cc-----Cc
Q 037996 324 IDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-FP-----FP 397 (535)
Q Consensus 324 ~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~-----~~ 397 (535)
....+.+..+.+.++.+.+++.+...++..++.++.|+++||++|| ..+..+.++..++..+.. .. +.
T Consensus 19 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
T TIGR00900 19 QVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK------KVMIGADLIRAVLVAVLPFVALLGGLNI 92 (365)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh------HHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 3445566677888889999999999999999999999999999755 344444444444333322 22 45
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcc
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVK 477 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 477 (535)
+.+++..++.|++.+...+...+++.|.+|+++|++++|..+....+|..+ +|.+.+.+.+..+
T Consensus 93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~l~~~l~~~~g--------------- 156 (365)
T TIGR00900 93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV-GPGIGGLMYATLG--------------- 156 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhh---------------
Confidence 667778888899999988999999999999999999999999999999976 9999999887644
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 478 ELICIGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 478 ~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
|+..|++.++..+++.++...+
T Consensus 157 ---------~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 157 ---------IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888777666555444333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=124.96 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=128.8
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchH
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSV 400 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~ 400 (535)
......|.+.+++|.+..+.++..+.+.++..++.+.+|+++||+||| ..+..+.++..++.++.... +.+.+
T Consensus 24 iv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk------~~l~~~~~~~~~~~~~~~~a~~~~~l 97 (495)
T PRK14995 24 VLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK------RLLMLGGTLFGLASLAAAFSPTASWL 97 (495)
T ss_pred HHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344557888889999999999999999999999999999999999544 56667777777777666654 56778
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhh-ccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELF-GLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKEL 479 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~ 479 (535)
++..++.|++.+...+.....+.+.+ |+++|+++.|+......+|..+ ||.+.|.+.++.+
T Consensus 98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~-gp~lgg~l~~~~g----------------- 159 (495)
T PRK14995 98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF-GPLVGGILLEHFY----------------- 159 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC-----------------
Confidence 88889999998887777777777776 6789999999999999999966 9999999988744
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 480 ICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|++.|++...+.++..++..+..++
T Consensus 160 -------wr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 160 -------WGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998877777666555554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-11 Score=120.24 Aligned_cols=156 Identities=16% Similarity=0.143 Sum_probs=120.6
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHH
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVAS 404 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 404 (535)
..+.+.+++|.++.+.++..+...++..++.++.|+++||+++| ..+..+.++..++.+..... +.+.+.+..
T Consensus 37 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (406)
T PRK11551 37 AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK------RILIVSVALFGLFSLATAQAWDFPSLLVAR 110 (406)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 45667788899999999999999999999999999999999765 34445555555554444433 566777788
Q ss_pred HHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccccc
Q 037996 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGV 484 (535)
Q Consensus 405 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (535)
++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+ +|.+.+.+.+..
T Consensus 111 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~----------------------- 166 (406)
T PRK11551 111 LLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDA----------------------- 166 (406)
T ss_pred HHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcccc-----------------------
Confidence 89999999888888999999999999999999999999999966 888776665543
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 485 KCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 485 ~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
+|+..|++.+++.++..++.....+++
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 167 -AWRHIFYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 288888887766655554444433443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=118.81 Aligned_cols=176 Identities=16% Similarity=0.135 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccc-----hhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHH
Q 037996 304 IDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTI-----KSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLML 378 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a-----~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 378 (535)
+++..+++..++............+.+.++.|.+..+. ++..++..+...++.++.|+++||++|| ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~ 87 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK------IML 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH------HHH
Confidence 44555555555443333344556777778888876653 6778888999999999999999999654 445
Q ss_pred HHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 379 TLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 379 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
..+.++..++.+++... +.+.+++..++.|++.+ ..+.....+.+.+++++|+.+.++.+....++..+ +|.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l 165 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALL-GPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55666666665554443 55667777788888654 45666778889999999999999999999999876 99999988
Q ss_pred hhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 458 YDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
.+..+ |+..|.+.+++.+++.++..++.++
T Consensus 166 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (408)
T PRK09874 166 ADSYG------------------------LRPVFFITASVLFLCFLVTLFCIRE 195 (408)
T ss_pred HHHhC------------------------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 87643 8889988888777766655554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-11 Score=120.43 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=128.3
Q ss_pred HHHHHHHHhhhhchhhhhcch-HHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHH
Q 037996 307 LILFVATFGGLGSSLTAIDNL-GQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLS 385 (535)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 385 (535)
+.+.+..++............ .++.++.|.++.+.++..+...+...+.++++|+++||+++| ..+..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k------~~l~~~~~~~ 86 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK------PMIVTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch------HHHHHHHHHH
Confidence 333344444433333334333 445567899999999999999999999999999999999644 4566677777
Q ss_pred HHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhh
Q 037996 386 CIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVK 464 (535)
Q Consensus 386 ~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~ 464 (535)
.++.+.+... +.+.+++..++.|++.+...+...+++.|.+|+++++++.|+......+|..+ ||.+.+++. ..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~i-g~~l~g~l~-~~g-- 162 (400)
T PRK11646 87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVI-GALLGSWLL-QYD-- 162 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-Hhh--
Confidence 7776665544 45667777888898888777888889999999999999999999999999977 999999987 322
Q ss_pred HhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 465 ELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
|+..|++.+++.++..++..+..
T Consensus 163 ----------------------~~~~f~~~~~~~~~~~i~~~~~~ 185 (400)
T PRK11646 163 ----------------------FRLVCATGAVLFVLAAAFNAWLL 185 (400)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 88899888777766655444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-11 Score=119.68 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHH
Q 037996 305 DMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVL 384 (535)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 384 (535)
-+|...+.+++.......+-...+.+.+++|+++.+.++..+...++..++.+++|++.||+++| ..+..+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r------~~~~~~~~~ 81 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK------RQLIFGFAL 81 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHH
Confidence 34444444443333333344456778888999999999999999999999999999999999755 345556666
Q ss_pred HHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhh
Q 037996 385 SCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAV 463 (535)
Q Consensus 385 ~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~ 463 (535)
..++.++.... +.+.+++..++.|++.+...+....++.|.+|+++|+.+.+..+....+++.+ +|.+.+.+.+.
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~--- 157 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI-FPIIAAYLLAR--- 157 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc---
Confidence 66665555544 45667777888899888888888889999999999999999988888888866 88888877654
Q ss_pred hHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHH
Q 037996 464 KELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALV 504 (535)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l 504 (535)
..+|+..|.+.+++.++..++
T Consensus 158 --------------------~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 158 --------------------SIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred --------------------cccHHHHHHHHHHHHHHHHHH
Confidence 123999998877766655433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-11 Score=119.80 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=125.8
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchH
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSV 400 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~ 400 (535)
.+...+|.+.++++.+..+.++..+++.++..++.+++|+++||+||| ..+..+.++..++.++.... +.+.+
T Consensus 34 ~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr------~~l~~~~~~~~~~~~~~~~a~~~~~l 107 (413)
T PRK15403 34 LIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR------PVLITGALIFTLACAATLFTTSMTQF 107 (413)
T ss_pred hhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch------HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345566778888999999999999999999999999999999999655 45556666666666655544 56677
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
++..++.|++.+...+....++.|.+++++++++.++.+....++..+ +|.+.+.+.+..+
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~lg~~l~~~~g------------------ 168 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII-GPLSGAALMHFVH------------------ 168 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC------------------
Confidence 888889999887656666788899999999999999999999999966 9988888776533
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
|+..|++.+++.+++.++.++..+++
T Consensus 169 ------w~~~f~~~~~~~~i~~~~~~~~lp~~ 194 (413)
T PRK15403 169 ------WKVLFAIIAVMGLIAFVGLLLAMPET 194 (413)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999998887777665544434443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=119.13 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=109.7
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.....+.+.++.|.++.+.++..+...++..++.++.|+++||++|| ..+..+.++.+++.++.... +.+.++
T Consensus 37 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~l~ 110 (426)
T PRK12307 37 IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK------PLMMWSIVAYSVGTGLSGLASGVIMLT 110 (426)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34456677788999999999999999999999999999999999644 56666777777776655544 566788
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
+..++.|++.+...+....++.|.+|+++|+++.++......+|.++ +|.+.+.+.+..
T Consensus 111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~~~l~~~l~~~~ 169 (426)
T PRK12307 111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII-AAYFMPSFAEAY 169 (426)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH-HHHHHHHHcccC
Confidence 88899999999888999999999999999999999999988999866 888887776653
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-10 Score=112.27 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=89.6
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhccccccchhhhccccc-----chHHHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITP-----TWFVLLVGSGMNFAGYLMIWLAVTGKIAKPA 84 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 84 (535)
.....|.+++++|++++|++.+.....+.-.+-++.|.++|.+- ||+-++++.++..++.+.+++ ..... .+
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~--~~~~~-~s 85 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL--LPASE-SS 85 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh--ccccc-ch
Confidence 34567889999999999999988888888788999999999983 555566666666555444322 12211 23
Q ss_pred HHHHHHHHHHhhcChhhHhhhhhhhHhhhc---CCCCcchhhhhHHhhhhhHHHHH
Q 037996 85 VWHMCAYICIGANSQNFANTGALVTCVKNF---PESRGNMIGLLKGFTGLSGAILT 137 (535)
Q Consensus 85 ~~~l~~~r~l~Gig~g~~~~~~~~~~~~~f---p~~rg~~~g~~~~~~~lg~~i~~ 137 (535)
.....++-++..+|....+..+-.+..|.- |++||...+.......+|+.+..
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~ 141 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGS 141 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 455556667788899999999988888877 33467777777666666765544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=119.21 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=114.5
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-----Ccch
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-----FPGS 399 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-----~~~~ 399 (535)
...|++.++ |++..+.++..+...++..++.++.|+++||+++| ..+..+.++.+++.+.+... +...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 122 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGLILAAAVMLFMGFVPWATSSIAV 122 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc------hhHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 456677666 99999999999999999999999999999999755 34556666666655554432 2335
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccc
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKEL 479 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~ 479 (535)
+++..++.|++.+...+.....+.|.+|+++|+++.|+.+....+|+.+.+|.+...+...
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------------------- 183 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF------------------- 183 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-------------------
Confidence 5666778899888887777788889999999999999999988888755355433222221
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 480 ICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
.+|+..|++.+++.++..++..++.+++
T Consensus 184 -----~gw~~~f~i~~~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 184 -----NDWHAALYMPAFAAILVALFAFAMMRDT 211 (452)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1389999988877776655555554443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.3e-11 Score=119.53 Aligned_cols=151 Identities=18% Similarity=0.239 Sum_probs=113.2
Q ss_pred hhcchHHH-HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhh-hhccCCCchHHHHHHHHHHHHHHHHHhcc--Ccc
Q 037996 323 AIDNLGQI-GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGL-LAKYKMPRPLMLTLVLVLSCIGLLLIAFP--FPG 398 (535)
Q Consensus 323 ~~~~~~~~-~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~-~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--~~~ 398 (535)
+...++.+ .+++|+++.+++.+.+.+.....++.+++|+++||+ |+| ..+.++.++..++.+++... +..
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr------r~iliG~il~~lg~lll~~~~~~~~ 101 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR------MAVMLGALLMAIGHVVLGASEIHPS 101 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH------HHHHHHHHHHHHHHHHHHHhhcchh
Confidence 33344444 456799999999999999999999999999999998 755 34556777777776555432 223
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccC--cccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCc
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLK--YYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 476 (535)
.+++...+..++.|...+..+++++|.+|++ .|.+++++.+...++|+.+ +|.+.+++.+..+
T Consensus 102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i-ap~l~g~L~~~~G-------------- 166 (493)
T PRK15462 102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII-APIACGYAQEEYS-------------- 166 (493)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH-HHHHHHHHHhhhC--------------
Confidence 3444455566677776777788999999975 6999999999999999977 9999999987643
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHH
Q 037996 477 KELICIGVKCYRLPFIILACVTCFGALV 504 (535)
Q Consensus 477 ~~~~~~~~~~~~~~f~~~~~~~~~~~~l 504 (535)
|+..|.+.++..+++.+.
T Consensus 167 ----------w~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 167 ----------WAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred ----------hHHHHHHHHHHHHHHHHH
Confidence 899998876655554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-11 Score=119.08 Aligned_cols=157 Identities=10% Similarity=0.013 Sum_probs=120.1
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~ 401 (535)
+....|.+.+++|.++.+.+++.+.+.++..++.+..|+++||++|| ..+.........+...... .+...++
T Consensus 10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR------WFLFGSLATFAAAAGRLLDPFNYEWLL 83 (368)
T ss_pred HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch------HHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 44567788889999999999999999999999999999999999754 3333333333333222232 3567788
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+.. ......+.|.+|+++|+++.++......+|..+ ++.+.+.+.++.+
T Consensus 84 ~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l-~~~~~~~l~~~~g------------------- 142 (368)
T TIGR00903 84 ACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIF-ALAAGLKIYTAGG------------------- 142 (368)
T ss_pred HHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc-------------------
Confidence 8899999998864 444455689999999999999999999999977 8888888876533
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
||..|.+.+++.++..++..+..+|
T Consensus 143 -----Wr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 143 -----LQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999888877776665555544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=121.12 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=116.6
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-----c-cCcc
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-----F-PFPG 398 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-----~-~~~~ 398 (535)
...+.+.+++|.+..+.+++.+.+.++..++.+++|+++||+++|+ .+..+.++.++..+.+. . .+.+
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQ------FLPFLLILSAICMLGFGASLGSGSVSLG 123 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccc------hHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 3466778899999999999999999999999999999999997653 33344444333333222 2 3456
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccc
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKE 478 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~ 478 (535)
.+++..++.|++.+...+....++.|.+|+++||.+.|+......+|..+ ++.+..++.+...
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l-~~~i~~~~~~~~~---------------- 186 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG-AGGVALWGANYFF---------------- 186 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH-HHHHHHHHHHhhc----------------
Confidence 77778889999999888888899999999999999999999999999976 8777766555421
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 479 LICIGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 479 ~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
.++|+..|.+.+++.++..++.+++
T Consensus 187 -----~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 187 -----DGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred -----cCcchhHHHHHHHHHHHHHHHHHHh
Confidence 1237778877776666554444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-11 Score=120.38 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=127.1
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
+....+.+.+++|.++.+.++..+...++..+++++.|+++||++|| ..+..+.++..++.+.+... +.+.++
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK------PVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh------HHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 44567777888999999999999999999999999999999999643 45566666666666555543 556677
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+...+++.|.+++++|+++.++.+....++..+ +|.+.+.+.+..+
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------- 143 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLL-APIIGGWLLVWFS------------------- 143 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-------------------
Confidence 77888899988888888899999999999999999999999999966 9999988887643
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|++.+++.++..++..+..++
T Consensus 144 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 144 -----WHAIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8889988877777666555444444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=120.92 Aligned_cols=176 Identities=16% Similarity=0.166 Sum_probs=124.2
Q ss_pred HHhhhhH-HHHHHHHHHHhhhhchhhhhc-chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchh-hhhccCCCc
Q 037996 298 LQALLSI-DMLILFVATFGGLGSSLTAID-NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEG-LLAKYKMPR 374 (535)
Q Consensus 298 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r 374 (535)
.+.+++| .+|..+...++.....+.... .+.++.+++|+++.+++...+.+........+++|+++|| +|+|
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r----- 88 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK----- 88 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----
Confidence 3445665 477776665554443333333 4445557789998888888777666656666789999999 5654
Q ss_pred hHHHHHHHHHHHHHHHHHhcc-C-cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCc--ccchhhHHhhhhhhHHHHHh
Q 037996 375 PLMLTLVLVLSCIGLLLIAFP-F-PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKY--YSTLFNCGQLASPLGSYILN 450 (535)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~ig~~i~~ 450 (535)
..+..+.++..++..++... + ...+++..++.|++.|...+...+++.|.+|+++ +..++++.++..++|..+ +
T Consensus 89 -~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~-g 166 (500)
T PRK09584 89 -RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF-S 166 (500)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH-H
Confidence 45566667777776665543 2 3345566678889888888888889999998643 456788889999999976 9
Q ss_pred HhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHH
Q 037996 451 VKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALV 504 (535)
Q Consensus 451 p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l 504 (535)
|.+.|++.+..+ |+..|.+.++...++.+.
T Consensus 167 p~i~g~l~~~~g------------------------~~~~F~i~~i~~~i~~i~ 196 (500)
T PRK09584 167 MLATPWLAAKYG------------------------WSVAFALSVVGMLITVVN 196 (500)
T ss_pred HHHHHHHHHhhC------------------------HHHHHHHHHHHHHHHHHH
Confidence 999999988743 999998877665655543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=117.53 Aligned_cols=159 Identities=11% Similarity=0.115 Sum_probs=122.4
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchH
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSV 400 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~ 400 (535)
.+....+++.+++|.++.+.++..+...++..++.++.|+++||++|| ..+..+.++..++.+..... +.+.+
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR------PVILVGMSIFILGTLVALFAHSLTVL 99 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh------HHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 344567788889999999999999999999999999999999999654 44555666666655554443 55667
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
++..++.|++.+...+....+..|.++.++++.+.+..+....++..+ +|.+.+.+.+..+
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g------------------ 160 (394)
T PRK11652 100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL-APLIGGLLTTLFG------------------ 160 (394)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC------------------
Confidence 778888899888777777788889998899999999999888888866 9999988876533
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|.+.+++.++..++..+..+|
T Consensus 161 ------~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 161 ------WRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8999988777665554444444333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=115.96 Aligned_cols=190 Identities=12% Similarity=0.068 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHHhhhhchhhhhcchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHH
Q 037996 302 LSIDMLILFVATFGGLGSSLTAIDNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTL 380 (535)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~ 380 (535)
-+|.++..++.+...+..-+.+....+.+.+ ++|+++.+.+++.++..+...++++..|++.||+|.| ..+.+
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R------~v~~~ 105 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR------RWTVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHH
Confidence 3456777666666555544444444555555 6899999999999999999999999999999999744 33445
Q ss_pred HHHHHHHHHHHHhc------cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHh
Q 037996 381 VLVLSCIGLLLIAF------PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVT 454 (535)
Q Consensus 381 ~~~~~~i~~~~~~~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~ 454 (535)
+.++..+..+.... ++.+.+++..++.|++ +..++.....+.+.+|++++|++.|+....+++|..+ ++.+.
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l-~~~l~ 183 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV-MQLVA 183 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH-HHHHH
Confidence 55555555555443 3556788888899997 6678888889999999999999999996555555543 33333
Q ss_pred Hh-----hhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 455 GS-----LYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 455 g~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
.. +.+..+.... ... ..+...++.++++...+.++..++.+++..
T Consensus 184 p~~i~~~l~~~~G~~~~--------~~~---~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~ 233 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGV--------PQA---DGSVMSLANAAWIWVPLLAIATIAAWSGMN 233 (462)
T ss_pred HHHHHHHHHHHhccccc--------ccc---ccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 32 2222211000 000 000223778887887777777666665533
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=117.21 Aligned_cols=158 Identities=11% Similarity=0.054 Sum_probs=122.0
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
+....+.+.+++|.++.+.++..+.+.++..++.++.|+++||++|| ..+..+.++..++.+..... +.+.++
T Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~l~ 105 (406)
T PRK15402 32 IQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR------PVMLAGVAFFILTCLAILLAQSIEQFT 105 (406)
T ss_pred HhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 44456677788999999999999999999999999999999999654 34555555666655554433 556677
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+.....+.|.+++++++...++......++..+ +|.+.+.+.+..+
T Consensus 106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~~------------------- 165 (406)
T PRK15402 106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL-GPLVGAALIHVLP------------------- 165 (406)
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccC-------------------
Confidence 77888898888877888889999999999999999888877788766 9999888877533
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|++.+++.+++.+......++
T Consensus 166 -----w~~~~~~~~~~~~~~~~~~~~~~~~ 190 (406)
T PRK15402 166 -----WRGMFVLFAALAALSFFGLWRAMPE 190 (406)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999988888777766554444333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=109.41 Aligned_cols=122 Identities=14% Similarity=-0.006 Sum_probs=89.6
Q ss_pred cHHHHH-HcCCChhhhHHHHHhhhhccc-cccchhhhcccccc-hHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037996 14 SKDIKA-SLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPT-WFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCA 90 (535)
Q Consensus 14 ~~~l~~-~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~-r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 90 (535)
-|++++ |.+-+.+-.||+.++..++.. +++++|+...|.+. |+-+++|.++..+|.++.. ++....+ ..-+.+++
T Consensus 58 wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~-~l~~~~~-~~~y~mL~ 135 (488)
T KOG2325|consen 58 WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYL-ALAYVPN-GVKYLMLV 135 (488)
T ss_pred chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHH-HHHhccc-chHHHHHH
Confidence 355544 577788889997666777775 59999999999985 7777799999999987652 3334443 25788889
Q ss_pred HHHHhhcChhhHhhhhhhhHhhhc-CCCCcchhhhhHHhhhhhHHHHHHH
Q 037996 91 YICIGANSQNFANTGALVTCVKNF-PESRGNMIGLLKGFTGLSGAILTQV 139 (535)
Q Consensus 91 ~r~l~Gig~g~~~~~~~~~~~~~f-p~~rg~~~g~~~~~~~lg~~i~~~~ 139 (535)
+|++.|+|.|.. ...-.++++.- +++|-++++....+.-+|. +.++.
T Consensus 136 ~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~-ilGp~ 183 (488)
T KOG2325|consen 136 ARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGI-ILGPT 183 (488)
T ss_pred HHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHH-HHhHH
Confidence 999999998886 44666666655 7889999888777664554 33433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-11 Score=122.01 Aligned_cols=177 Identities=16% Similarity=0.072 Sum_probs=126.5
Q ss_pred HHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH
Q 037996 298 LQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM 377 (535)
Q Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 377 (535)
+...++|+++.+++..++............|.+.++.+.++.+.++..+...++..++.++.|+++||++||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l----- 85 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI----- 85 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE-----
Confidence 334467888777666554443333344456667777788888999999999999999999999999999876532
Q ss_pred HHHHHHHHHHHHHHHh------ccCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhH
Q 037996 378 LTLVLVLSCIGLLLIA------FPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNV 451 (535)
Q Consensus 378 ~~~~~~~~~i~~~~~~------~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p 451 (535)
..+.++.+++.+.+. .++.+.+++..++.|++.+...+.....+.|.+|+++++++.++.+....+|..+ ||
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~ 163 (417)
T PRK10489 86 -LLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI-SP 163 (417)
T ss_pred -EehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh-HH
Confidence 222222233222211 1234556667777788877777777888999999999999999999999999966 99
Q ss_pred hHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHH
Q 037996 452 KVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVS 505 (535)
Q Consensus 452 ~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~ 505 (535)
.+.+.+.+..+ |++.|.+.++..+++.++.
T Consensus 164 ~l~g~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 164 ALGGLLIAAGG------------------------VAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHH
Confidence 99999887643 7778877766665554433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=115.76 Aligned_cols=148 Identities=17% Similarity=0.184 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhhhhchhhhhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHH
Q 037996 305 DMLILFVATFGGLGSSLTAIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLV 383 (535)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 383 (535)
.+|..++.++..+.....+....| ++.+++|+++.+.+++.+...++..++.+++|+++||+|+| ..+..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR------YTTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHH
Confidence 456666666665555555566667 47788999999999999999999999999999999999654 45556667
Q ss_pred HHHHHHHHHhc-c-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 384 LSCIGLLLIAF-P-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 384 ~~~i~~~~~~~-~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
+..++.+++.. + +.+.+++..++.|++.+ .+.....++.|.+|+++|+.+.++......+|..+ ++.+.+.+.+.
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~l~~~ 152 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV-AQFVMPPIIGS 152 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH-HHHHHHHHHHH
Confidence 77776665543 3 45667777888888754 45566788999999999999999988777777755 76666665543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=117.36 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHHHhhhhchh-h---hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH
Q 037996 302 LSIDMLILFVATFGGLGSSL-T---AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM 377 (535)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 377 (535)
++++++..+..+.+...... . ....++++.++.|- +...+++.+...+.+.++.++.|.++|.+| |++.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfG------Rr~~ 110 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFG------RRYF 110 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhc------chHH
Confidence 55677666554443322221 1 12345777788885 466778888899999999999999999995 5588
Q ss_pred HHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHh
Q 037996 378 LTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGS 456 (535)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~ 456 (535)
+..+.++..++.++.+.. +...++....+.|++.|... +....++|..|.|.|+...++......+...+ +|.+...
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~-~~~ia~~ 188 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWI-SPLIAQL 188 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcc-cHHHHHH
Confidence 889999999998888766 55678888999999977765 45667899999999988776665443333323 5545443
Q ss_pred hhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 457 LYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
+..+ .+||+.|++..++..+++++.++++++.
T Consensus 189 ~~~~------------------------~~WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 189 FAAH------------------------SGWRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred hccC------------------------CCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3322 2499999999998888887766655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=118.66 Aligned_cols=137 Identities=23% Similarity=0.301 Sum_probs=105.3
Q ss_pred CCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cC---cchHHHHHHHHHhhhc
Q 037996 337 PTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PF---PGSVYVASVIIGFSFG 412 (535)
Q Consensus 337 ~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~---~~~~~~~~~l~g~~~g 412 (535)
+..+.+++.+++.++..++.+++|+++||+||| ..+..+.++..++.++... .+ .+.+++..++.|++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~ 142 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK------KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH------HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 378889999999999999999999999999654 4455566666665555432 22 2367788899999999
Q ss_pred chhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHh---HhhhhhhhhhHhhhhcCCCCCcccccccccccchH
Q 037996 413 AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVT---GSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRL 489 (535)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~---g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (535)
...+....++.|.+|+++|+.+.++.+....+|..+ +|.+. +...+. .+|+.
T Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~------------------------~~w~~ 197 (481)
T TIGR00879 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILV-AYGFGSGKVSLNNT------------------------LGWRI 197 (481)
T ss_pred HHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH-HHHHHHHhhcCCCC------------------------ccHHH
Confidence 988989999999999999999999999999999976 87776 332222 24999
Q ss_pred HHHHHHHHHHHHHHH
Q 037996 490 PFIILACVTCFGALV 504 (535)
Q Consensus 490 ~f~~~~~~~~~~~~l 504 (535)
.|++.++..++..+.
T Consensus 198 ~f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 198 PLGLQLIPAGLLFLG 212 (481)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998866555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=119.30 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHH
Q 037996 305 DMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVL 384 (535)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 384 (535)
.+..+++..+.............+.+.+++|.++.+.++..+...++..++.++.|+++||++|| ..+..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~ 94 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR------LAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHH
Confidence 34444444444333333344456777788999999999999999999999999999999999654 455566666
Q ss_pred HHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 385 SCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 385 ~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
..++.+++... +.+.+++..++.|++.+...+....++.|.+++++|+.+.++......+|..+ +|.+.+.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~ 171 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV-AAQVYSLVVPVW 171 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccC
Confidence 66666655544 55677788889999999888888999999999999999999999999999976 999999887763
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=117.80 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHH
Q 037996 303 SIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVL 382 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 382 (535)
+|+|+.+++..++............+.+.++.+.++.+.++..+.+.+...+..+++|+++||++||+ ++..+.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~------vl~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR------VMFIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch------hhHHHH
Confidence 35677777666654432222333344456788888888899999999999999999999999997663 444555
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 383 VLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 383 ~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
++..++.+.+..... .++..++.|++.+...+...+++.|.+|+++|+++.|+......++..+ ||.++|.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~-Gp~lgG~l~~~ 150 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILL-GTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 555444443333211 2566678899999999999999999999999999999999999988866 99999999885
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=114.84 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=120.3
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
+....+.+.++.|.++.+.++..++..++..++.+++|+++||++|| ..+..+.++..++.+..... +.+.+.
T Consensus 25 ~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 25 YLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK------PVLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc------HHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34445667788899999999999999999999999999999999755 34555555555555554443 556667
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+...+.+.|.+++++++...+..+....++..+ +|.+.+++.+..+
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~l~~~~g------------------- 158 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPAL-APLLGAWLLNHFG------------------- 158 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-------------------
Confidence 77788888877777777788999999888999999988888888866 9999998887643
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
|+..|++.+++.++..++..++
T Consensus 159 -----~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 159 -----WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHc
Confidence 8989988877777665554444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=115.32 Aligned_cols=131 Identities=13% Similarity=0.054 Sum_probs=99.7
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHH---hc--cCcchH
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLI---AF--PFPGSV 400 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~---~~--~~~~~~ 400 (535)
+.+.+.+++|.++.+.++..+.+.++..++.++.|++.||+++| ..+..+.++..++.+.+ .. .+.+.+
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL------KTMMIGLLLWCVGHAAFIVFGLGHANYPLI 108 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH------HHHHHHHHHHHHHHHHHHHHhccCccHHHH
Confidence 44455588899999999999999999999999999999999654 44455555555554332 22 234455
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
++..++.|++.+...+.....+.+.+++++|+++.|+.+....+|..+++|.+.+++.+..+
T Consensus 109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 66777778887776666677888999999999999999999988864448888888877633
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.2e-11 Score=117.59 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=119.8
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchH
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSV 400 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~ 400 (535)
......|++.+++|.++.+.++..+.+.++..+++++.|+++||+|||+ .+..+.++..++.+..... +.+.+
T Consensus 21 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~------~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (377)
T TIGR00890 21 TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRA------VAMLGGILYGLGFTFYAIADSLAAL 94 (377)
T ss_pred hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccc------hhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888889999999999999999999999999999999997653 3445666666666555544 55667
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
++...+.|++.+..++.....+.+.+| ++|+.+.++......+|..+ ++++.+.+.+..
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~------------------- 153 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI-LSPLITSVINLE------------------- 153 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH-HHHHHHHHHhcc-------------------
Confidence 777788899888777777777777776 78999999999998888866 556666665542
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
+|+..|.+.+++.++..+..+++.
T Consensus 154 -----~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 154 -----GVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHhe
Confidence 389999988888777666555444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=111.29 Aligned_cols=153 Identities=27% Similarity=0.335 Sum_probs=124.8
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.....+.+.++.|.++.+.++..+...++..++.++.|+++||++|| ..+..+.++..++.+..... +.+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (352)
T cd06174 18 LSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR------RVLLLGLLLFALGSLLLAFASSLWLLL 91 (352)
T ss_pred hHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc------hhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 44456667788899999999999999999999999999999999755 34556666666666655543 566777
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+...+++.|.+|+|+|++..++......+|..+ +|.+.+.+.+..+
T Consensus 92 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~------------------- 151 (352)
T cd06174 92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL-GPLLGGLLAESLG------------------- 151 (352)
T ss_pred HHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhh-------------------
Confidence 88889999999999999999999999999999999999999999977 9999999888743
Q ss_pred cccccchHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
|+..+.+.+++.+++.++..
T Consensus 152 -----~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 152 -----WRWLFLILAILGLLLALLLL 171 (352)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 77888777777666655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=114.42 Aligned_cols=152 Identities=16% Similarity=0.085 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHhhhhchhhhhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHH
Q 037996 303 SIDMLILFVATFGGLGSSLTAIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLV 381 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 381 (535)
++.++...+..+............+| ++.+++|.|+.+.++..+...++..++++++|+++||++|| ..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r------~~l~~~ 87 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAK------RSALQG 87 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcch------HHHHHH
Confidence 34455555444443333223334444 45568899999999999999999999999999999999755 344444
Q ss_pred HHHHHHHHH---HHhc------cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHh
Q 037996 382 LVLSCIGLL---LIAF------PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVK 452 (535)
Q Consensus 382 ~~~~~i~~~---~~~~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~ 452 (535)
.+...++.+ .... .+.+.+++..++.|++.+...+...+++.|.+|+|+|+++.+.......++..+ +|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~-g~~ 166 (392)
T PRK12382 88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAA-GAP 166 (392)
T ss_pred HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHH-HHH
Confidence 444333322 1111 123456677888899888877777788999999999999999998888888866 999
Q ss_pred HhHhhhhhh
Q 037996 453 VTGSLYDHQ 461 (535)
Q Consensus 453 i~g~l~~~~ 461 (535)
+.+.+.+..
T Consensus 167 ~~~~l~~~~ 175 (392)
T PRK12382 167 LGLLLHSHF 175 (392)
T ss_pred HHHHHHhcc
Confidence 988887763
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.9e-10 Score=114.32 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=117.5
Q ss_pred hcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHH
Q 037996 324 IDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYV 402 (535)
Q Consensus 324 ~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 402 (535)
..+.+.+.+++|.+..+.++..+.+.+...++.++.|+++||+++| ..+..+.++..++.+.+... +.+.+++
T Consensus 39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 112 (455)
T TIGR00892 39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR------PVVIAGGLLASLGMILASFSSNVIELYL 112 (455)
T ss_pred hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch------HHHHhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 3456777788999999999999999988999999999999999654 34555666666666555544 4444444
Q ss_pred H-HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 403 A-SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 403 ~-~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
. .++.|++.+...+....++.+.++ ++|+++.|+.+....++..+ +|.+.+.+.+..+
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~-~~~l~~~l~~~~g------------------- 171 (455)
T TIGR00892 113 TAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST-LAPLNQYLFESFG------------------- 171 (455)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhC-------------------
Confidence 3 467788888766666677888886 88999999999999999966 8999999888744
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
|+.+|++.+++.+++.+..+++
T Consensus 172 -----wr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 172 -----WRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988877665544444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7e-10 Score=112.10 Aligned_cols=130 Identities=13% Similarity=0.117 Sum_probs=110.2
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.....|.+.+++|.|..+.++..+.+.++..++.+..|+++||+|+| ..+..+..+.+++.+..... +.+.++
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r------~~l~~~~~l~~~~~~~~~~a~~~~~ll 101 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER------RSVAISLLLIAVGALMRELYPQSALLL 101 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch------HHHHHHHHHHHHHHHHHHHCcchHHHH
Confidence 33457778888999999999999999999999999999999999644 56778888888888877655 567778
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
+..++.|++.+...+..+.++.+.+| ++|+.+.|+.......|..+ ++.+.+.+.++
T Consensus 102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~-g~~~~~~l~~~ 158 (393)
T PRK09705 102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL-GAAITPWLVQH 158 (393)
T ss_pred HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 88999999999888888888999886 88999999999888888866 88888887766
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=113.47 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhhhhchhhhh-cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchh-hhhccCCCchHHHHHHH
Q 037996 305 DMLILFVATFGGLGSSLTAI-DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEG-LLAKYKMPRPLMLTLVL 382 (535)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~~~~~~~ 382 (535)
.+|..+...++--...+... ....|+.+++|++..++.+..+.+.....+..+++|+++|| +||| ..+..+.
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r------~~~~~g~ 88 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK------RTIVLGA 88 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH------HHHHHHH
Confidence 34554444333322222233 34445556789999999999888888888888999999999 8654 5667788
Q ss_pred HHHHHHHHHHhcc-Cc-chHHHHHHHHHhhhcchhhHHHHHHHHhhccC--cccchhhHHhhhhhhHHHHHhHhHhHhhh
Q 037996 383 VLSCIGLLLIAFP-FP-GSVYVASVIIGFSFGAQLPLIFAIISELFGLK--YYSTLFNCGQLASPLGSYILNVKVTGSLY 458 (535)
Q Consensus 383 ~~~~i~~~~~~~~-~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~ig~~i~~p~i~g~l~ 458 (535)
++..++.+.+... +. ..+++..++.|++.|...+...+++.|.+|++ +++.++++.++..++|..+ +|.+.|++.
T Consensus 89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~-g~~l~g~l~ 167 (489)
T PRK10207 89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI-SLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH-HHHHHHHHH
Confidence 8888877766654 22 33456778889999998888899999999877 4578999999999999976 999999998
Q ss_pred hhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHH
Q 037996 459 DHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGA 502 (535)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 502 (535)
++.+ |++.|++.++..+++.
T Consensus 168 ~~~g------------------------w~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 168 DKFG------------------------YSVTYNLCGAGLIIAL 187 (489)
T ss_pred HhhC------------------------hHHHHHHHHHHHHHHH
Confidence 8743 9999988655444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-10 Score=111.34 Aligned_cols=155 Identities=13% Similarity=0.041 Sum_probs=110.7
Q ss_pred hHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHH
Q 037996 327 LGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASV 405 (535)
Q Consensus 327 ~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 405 (535)
+.++.++.|.++.+.++..+...+...+..++.|+++||+|+|| ..+..+.+...++.++.... +.+.+++..+
T Consensus 21 ~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (375)
T TIGR00899 21 SLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRK-----GLILFCCLLAALACLLFAWNRNYFLLLVLGV 95 (375)
T ss_pred HHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33455678999999999999999999999999999999997653 23333444444444444443 4555566666
Q ss_pred HHHhhhcchhhHHHHHHHHhhccCcccch--hhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 406 IIGFSFGAQLPLIFAIISELFGLKYYSTL--FNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 406 l~g~~~g~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
+.|.+.+...+...++..|..+++.++.+ .+.......+|..+ +|.+.+.+.+..+
T Consensus 96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~~~--------------------- 153 (375)
T TIGR00899 96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVI-GPPLAFWLALGFG--------------------- 153 (375)
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHH-hhhHHHHHHHhcc---------------------
Confidence 77766666677777788888776666644 57777777888866 9999998887643
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 484 VKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|++.+++.++..++..+..++
T Consensus 154 ---~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 154 ---FTVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999888777666655554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=113.82 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=109.2
Q ss_pred CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc----------C---cchHH
Q 037996 335 GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP----------F---PGSVY 401 (535)
Q Consensus 335 g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~----------~---~~~~~ 401 (535)
+.++.+.++..+.+.++..++.+++|+++||+||| ..+..+.++..++.+....+ + ...++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr------~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR------DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence 77778889999999999999999999999999655 45556666666555443321 1 13456
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.|...+...+++.|.+|+++||.+.++......+|..+ ++.+.+.+.+......
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~---------------- 187 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV-VYFVNYFIARSGDASW---------------- 187 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccc----------------
Confidence 78899999999999999999999999999999999999888888866 6655444432210000
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
....+|+..|++.++..++..+..++
T Consensus 188 ~~~~gWr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 188 LNTDGWRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHc
Confidence 00234999998887777665544333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=106.44 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=129.4
Q ss_pred chHHHHhhcCCCCcc-chhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHH
Q 037996 326 NLGQIGESLGYPTKT-IKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVA 403 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~-a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 403 (535)
..+++.+++|+++.+ .+.+.+.+..+..+..+.+|+++||+|.| ..+..+.+.-++..+++.+. +...+.+.
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K------~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~ 121 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK------PVLVLQALSFVCVWLLLLLGTSVWHMQLM 121 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777899999999 99999999999999999999999999644 45556666666666666555 56778889
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.+++|++.|..+ ....++.+.+|+++|+++.|+.+....+|.++ ++++.+.+ ...+
T Consensus 122 R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I-a~~L~qll-~s~g--------------------- 177 (511)
T TIGR00806 122 EVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL-SSVLGQLL-VTLG--------------------- 177 (511)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhcC---------------------
Confidence 999999999999 88899999999999999999999999999977 88888883 3332
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 484 VKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
...|....++......+++++++++...+|.
T Consensus 178 Wr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~s 208 (511)
T TIGR00806 178 WISYSTLNIISLVFMTFSVFLALFLKRPKRS 208 (511)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 2347777777777788888888887755553
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-10 Score=117.10 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=116.0
Q ss_pred hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc---cCcchHHHHHHHHHh
Q 037996 333 SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF---PFPGSVYVASVIIGF 409 (535)
Q Consensus 333 ~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~l~g~ 409 (535)
+++++..+.+.+.+.+.++..++.+++|+++||+++| ..+..+.++..++.++... .+...+++..++.|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFK------WSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcc------hhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 4678888889999999999999999999999999755 3444555555555444322 234567778899999
Q ss_pred hhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchH
Q 037996 410 SFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRL 489 (535)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (535)
+.+...+....++.|.+|+++|+++.|+.+....+|..+ +|++.+.+.+.. .+|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~l~~~l~~~~-----------------------~gw~~ 199 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCESW-----------------------GGWPM 199 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc-----------------------CCCCe
Confidence 999999999999999999999999999999999999977 999999887652 13899
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037996 490 PFIILACVTCFGALVSFILV 509 (535)
Q Consensus 490 ~f~~~~~~~~~~~~l~~~l~ 509 (535)
.|++.+++.++..++.+.+.
T Consensus 200 ~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 200 IFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred ehhhhhHHHHHHHHHHHHHh
Confidence 99988877766555444443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.5e-10 Score=112.65 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=109.6
Q ss_pred HhhhhHHHHHHHHHHHhhhhchhhhhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH
Q 037996 299 QALLSIDMLILFVATFGGLGSSLTAIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM 377 (535)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 377 (535)
+.+++|++|.+.+.+++.......+....+ ++.+++|+++.+.+...+...++..++++++|+++||+++|+ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~------~ 78 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKK------H 78 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH------H
Confidence 345678889888777766554333444444 444458999999999999999999999999999999997653 2
Q ss_pred HHHHHHHHHHHHH---HHhccCc------chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHH
Q 037996 378 LTLVLVLSCIGLL---LIAFPFP------GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYI 448 (535)
Q Consensus 378 ~~~~~~~~~i~~~---~~~~~~~------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i 448 (535)
+.++..+..++.. ....... ....+..++.|.+.....+....+..+ . .++++..+|.......+|..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i 156 (420)
T PRK09528 79 LLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWAL 156 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHH
Confidence 2232222222211 1111100 011112222333333333344444332 3 256788889988888999977
Q ss_pred HhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 449 LNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 449 ~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
+|.+.|.+.+. + |+..|++.+++.++..++.+...
T Consensus 157 -~~~~~g~l~~~-~------------------------~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 157 -CAFIAGILFNI-N------------------------PQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred -HHHHHHHHHhc-C------------------------chHhHHHHHHHHHHHHHHHhccc
Confidence 99999988764 1 77888887777666655544443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=108.89 Aligned_cols=151 Identities=11% Similarity=-0.011 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHH
Q 037996 303 SIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVL 382 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 382 (535)
+++++.++...++............|.+.+++|.++.++++..+...++..+++++.|+++||+|+| ..+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k------~~~~~~~ 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN------RSYYLAS 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHH
Confidence 4557777766655444444455667788888999999999999999999999999999999999765 4455566
Q ss_pred HHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 383 VLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 383 ~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
++..++....... +.+.+.+..++.|++.+...+.....+.+..++++|+++.+.......+|..+ +|.+.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~~~l~~~ 156 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL-GQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccc
Confidence 6666665555443 56677788889999988887777777788888899999999999999999977 99998887664
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=111.01 Aligned_cols=151 Identities=14% Similarity=0.063 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhhhchhhhhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHH
Q 037996 304 IDMLILFVATFGGLGSSLTAIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVL 382 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 382 (535)
+++..+.+..+............++ ++.+++|.++.+.++..+...++..+++++.|+++||+|||+ .+..+.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~------~l~~~~ 88 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKK------AVVFGL 88 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcc------hHHHHH
Confidence 3444444444433222222333444 455678999999999999999999999999999999997653 344455
Q ss_pred HHHHHHHHHHh---cc------CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhH
Q 037996 383 VLSCIGLLLIA---FP------FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKV 453 (535)
Q Consensus 383 ~~~~i~~~~~~---~~------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i 453 (535)
++..++.+.+. .. +...+++..++.|++.+...+....++.|.+++|+|+++.++......+|..+ +|.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l 167 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI-GAPL 167 (399)
T ss_pred HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH-HHHH
Confidence 44444322221 11 12245667788899988888888888899999999999999988888888765 9999
Q ss_pred hHhhhhhh
Q 037996 454 TGSLYDHQ 461 (535)
Q Consensus 454 ~g~l~~~~ 461 (535)
.+.+.+..
T Consensus 168 ~~~l~~~~ 175 (399)
T PRK05122 168 GVLLYHWG 175 (399)
T ss_pred HHHHHHcc
Confidence 88887763
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-10 Score=106.90 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=131.0
Q ss_pred CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcc
Q 037996 335 GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGA 413 (535)
Q Consensus 335 g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~ 413 (535)
+-.+.+.+++++..++.+.+.+++.|.+.||+|. +..+.++..++....+++++. +++.+.++..+-|++.++
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy------~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGY------KIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAF 175 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhcc------ccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHH
Confidence 4456788999999999999999999999999954 467888999999999888887 467788899999999999
Q ss_pred hhhHHHHHHHHhhccCc-ccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHH
Q 037996 414 QLPLIFAIISELFGLKY-YSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFI 492 (535)
Q Consensus 414 ~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 492 (535)
......++++|.||.++ |+++.|+...+.++|..+ ||+++|.+||..+ +..+|.
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lv-gPpfGGilYe~~G------------------------k~aPFl 230 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLV-GPPFGGILYEFAG------------------------KSAPFL 230 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhcccee-cCCcccchHhhcC------------------------CcCcHH
Confidence 99888999999999775 699999999999999977 9999999999855 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 037996 493 ILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 493 ~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
++++++++...+.+++..+++.
T Consensus 231 VL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 231 VLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHHHHHHHHHHheeCcccc
Confidence 9999999998888777655544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-09 Score=107.77 Aligned_cols=122 Identities=13% Similarity=0.022 Sum_probs=94.9
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHH------------H--
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLA------------V-- 76 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~------------~-- 76 (535)
.....+++.|+++.++.+++.+.+-++..+ ..+..+..-|..|-+.+-+|.+++++|.++.++= .
T Consensus 118 s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~ 197 (735)
T KOG3626|consen 118 SVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIK 197 (735)
T ss_pred hhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhh
Confidence 345678999999999999999999999976 7888999999999999999999999998887542 0
Q ss_pred -hcCC----------------------------CChh-HH-HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhh
Q 037996 77 -TGKI----------------------------AKPA-VW-HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGL 124 (535)
Q Consensus 77 -~~~~----------------------------~~~~-~~-~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~ 124 (535)
.... .+++ ++ .+++.-++.|+|....++....++-|+.. ++-....|+
T Consensus 198 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi 277 (735)
T KOG3626|consen 198 QSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGI 277 (735)
T ss_pred ccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHH
Confidence 0000 0111 34 45578899999999999999999998885 567888888
Q ss_pred hHHhhhhhH
Q 037996 125 LKGFTGLSG 133 (535)
Q Consensus 125 ~~~~~~lg~ 133 (535)
..+...+|.
T Consensus 278 ~~~~~~lGP 286 (735)
T KOG3626|consen 278 LYSMAILGP 286 (735)
T ss_pred HHHHHHhhh
Confidence 776554444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=92.58 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=102.6
Q ss_pred HHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHH
Q 037996 345 VSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIIS 423 (535)
Q Consensus 345 ~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~ 423 (535)
.+...++..++.++.|++.||+++| ..+..+..+..++.+..... +.+...+..++.|++.+...+....++.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRK------PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchh------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456778889999999999999654 34445555555555444433 4556667788889998888888889999
Q ss_pred HhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHH
Q 037996 424 ELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGAL 503 (535)
Q Consensus 424 ~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 503 (535)
|.+|++++++..++.+....++..+ +|.+.+.+.+..+ |+..|.+.+.+.+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLL-GPPLGGVLAQFLG------------------------WRAPFLFLAILALAAFI 132 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHH-hHHhHHHHhcccc------------------------hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976 9999998876633 78888887777776665
Q ss_pred HHHHHH
Q 037996 504 VSFILV 509 (535)
Q Consensus 504 l~~~l~ 509 (535)
...++.
T Consensus 133 ~~~~~~ 138 (141)
T TIGR00880 133 LLAFLL 138 (141)
T ss_pred HHhhcC
Confidence 554443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=110.91 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=111.6
Q ss_pred hcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-------C
Q 037996 324 IDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-------F 396 (535)
Q Consensus 324 ~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-------~ 396 (535)
....+.+.+++|++..+.+++.++... ..+..+..|+++||+| ++..+.++.++..++.++.... +
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G------~R~vllig~ll~~iG~ll~ala~~~~i~~s 119 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLG------PRPIFVLSMTVFCLGTLLFALTFQEVIEGS 119 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 344567778889999988888776333 3456677899999995 4467778888888887766543 4
Q ss_pred cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCc
Q 037996 397 PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476 (535)
Q Consensus 397 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 476 (535)
.+.+++..++.|++.+...+.....+.+.|| ++||.+.|+.....++|+.++++...+++.+.
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~---------------- 182 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDN---------------- 182 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 4567777888899888777777778888886 88999999999999999987666655554433
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 477 KELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 477 ~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
++..|++.+++.++..++.+.+.
T Consensus 183 ----------~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 183 ----------TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhhe
Confidence 56677777777766655555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=106.18 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=104.8
Q ss_pred cchHHHHhhcCCCCcc-chhh-----HHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-Cc
Q 037996 325 DNLGQIGESLGYPTKT-IKSF-----VSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FP 397 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~-a~~~-----~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~ 397 (535)
...+++.++++.+... .++. .+...++..+|.++.|+++||+||| ..+..+.++++++.++.... +.
T Consensus 37 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr------~~l~~~~~l~~i~~~~~a~~~~~ 110 (490)
T PRK10642 37 FVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQ------KILAITIVIMSISTFCIGLIPSY 110 (490)
T ss_pred HHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHHHHHHHhcccH
Confidence 3455565665433322 1221 3566688999999999999999644 56777888888887777654 33
Q ss_pred c--------hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhh
Q 037996 398 G--------SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKK 469 (535)
Q Consensus 398 ~--------~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~ 469 (535)
. .+.+..++.|++.|..++....++.|.+|+++||...++......+|..+ ++.+...+..........
T Consensus 111 ~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~l-g~~~~~~~~~~~~~~~~~-- 187 (490)
T PRK10642 111 ATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVL-GAGVVVLISTIVGEANFL-- 187 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHhc--
Confidence 2 26677889999999999999999999999999999999988777777754 665544333211100000
Q ss_pred cCCCCCcccccccccccchHHHHHHHHHHHH
Q 037996 470 GMNRSDVKELICIGVKCYRLPFIILACVTCF 500 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 500 (535)
..+||..|++.+...++
T Consensus 188 --------------~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 188 --------------DWGWRIPFFIALPLGII 204 (490)
T ss_pred --------------CccHHHHHHHHHHHHHH
Confidence 12499999886654443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=107.77 Aligned_cols=128 Identities=17% Similarity=0.033 Sum_probs=106.7
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc----cCcchH
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF----PFPGSV 400 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----~~~~~~ 400 (535)
...|.+.+++|.++.+.+++.+...++..++++..|++.||+|+| ..+..+.++.+++.+++.. .+.+.+
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r------~~~~~g~~l~~~g~~l~~~~~~~~~~~~~ 97 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK------AGILLGLFLYALGAFLFWPAAEIMNYTLF 97 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 456777788999999999999999999999999999999999654 5666777777777665432 245566
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
.+..++.|++.+...+....++.+..|++++++..++.+....+|..+ +|.+.+.+..
T Consensus 98 l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-g~~i~~~l~~ 155 (410)
T TIGR00885 98 LVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII-GMVVAQQLIL 155 (410)
T ss_pred HHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 777888999999998888889999999999999999999999999976 9998887753
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=106.66 Aligned_cols=171 Identities=13% Similarity=0.112 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHhhhhchhhhhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHH
Q 037996 303 SIDMLILFVATFGGLGSSLTAIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLV 381 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 381 (535)
||++|.+....++.+.....+....+ ++.+++|+++.+.++..++..+...+++++.|+++||++||+ .+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~------~~~~~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK------HLLWI 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 57888887766665554434444444 444567999999999999999999999999999999997653 22222
Q ss_pred HHHHHHHHH---HHhccC------cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHh
Q 037996 382 LVLSCIGLL---LIAFPF------PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVK 452 (535)
Q Consensus 382 ~~~~~i~~~---~~~~~~------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~ 452 (535)
.....++.. .+.... .....+..++.|++.+...+....+..|.. ++++..+|.......+|..+ +|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~-g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWAL-CAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHH-HHH
Confidence 222222111 111111 112233456667777777777777776653 33456778888888888866 999
Q ss_pred HhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHH
Q 037996 453 VTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 453 i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
+.|.+.+. +|+..|++.+++.++..++.+.
T Consensus 152 ~~g~l~~~-------------------------~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 152 IAGILFSI-------------------------DPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHhhhhcc-------------------------CchHHHHHHHHHHHHHHHHHHH
Confidence 98877654 2888998887777766554433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=115.14 Aligned_cols=176 Identities=12% Similarity=0.106 Sum_probs=123.6
Q ss_pred hcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccC-------
Q 037996 324 IDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPF------- 396 (535)
Q Consensus 324 ~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~------- 396 (535)
...++.+-++++++..+.+++.+.+.+++.++.++.|++.||.+|++ .+.++.++++++.++++.++
T Consensus 53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~------~i~~g~ll~~lg~ll~alphf~~~~y~ 126 (633)
T TIGR00805 53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI------VIGIGCAIMGLGSFLLSLPHFLSGRYS 126 (633)
T ss_pred HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce------EEEecHHHHHHHHHHHhChHHhcCCcc
Confidence 34566777788999999999999999999999999999999996554 34455566666655543321
Q ss_pred ---------------------------------------------cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcc
Q 037996 397 ---------------------------------------------PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYY 431 (535)
Q Consensus 397 ---------------------------------------------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~ 431 (535)
...+++..++.|++.+..+++..+++.|.+|++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~ 206 (633)
T TIGR00805 127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNS 206 (633)
T ss_pred ccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcccc
Confidence 12345678899999999999999999999999999
Q ss_pred cchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 432 STLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 432 g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
+...|+.+....+|..+ |+.+.+++.+...+....+.....-.+++. ...+.|+..|++.+++.++..+..+++
T Consensus 207 ~~~~~i~~~~~~iG~~l-G~llgg~l~~~~~d~~~~~~~~~~l~~~dp--rWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 207 PLYIGILESIAVFGPAF-GYLLGSFCLQIYVDTGSVNTEDVILTPTDP--RWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHhhhHH-HHHHHHHHHhcccccccCCCCCCCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999976 999998887653210000000000000000 112358888988887777665544333
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=105.25 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=103.4
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYV 402 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 402 (535)
+....|.+.+++|+++.+.++..+...++..++.++.|+++||+++| ..+..+.++..++.+....++.+.+++
T Consensus 19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (355)
T TIGR00896 19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE------RSVAAGLLLIAAGILIRSAPGTALLFA 92 (355)
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch------HHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 44567788899999999999999999999999999999999999755 344455555555554443345566677
Q ss_pred HHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 403 ASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 403 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
..++.|++.+...+..+.++.|.++ ++++.+.++.+....+|..+ +|.+.+.+.+.
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~l~~~ 148 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAAL-AAAATVPLAQH 148 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 7888899888777777778888885 78999999999999999866 88888887765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=93.45 Aligned_cols=118 Identities=9% Similarity=-0.008 Sum_probs=82.8
Q ss_pred cccHHHHHH-cCCChhhhHH-HHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 12 TYSKDIKAS-LGYDQSTLNL-LGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 12 ~~~~~l~~~-~~~s~~~~~~-~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
...|++.+. .|+|..|++- +.-...-+.+ +.++...+.|..+.|++++++.+...+...++-+. ++.+.+
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-------~sv~~m 97 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-------TSVLAM 97 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------CcHHHH
Confidence 455667665 7899999987 5443334443 47889999999999999999998877776665333 567888
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILT 137 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~ 137 (535)
-+.-+..|++.+.. .+-.+++-...| ++-.++.+..-++.-+|-.+.+
T Consensus 98 q~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~ 146 (412)
T PF01770_consen 98 QLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISS 146 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988888774 455566655555 4567777776665544444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5e-08 Score=100.08 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=93.7
Q ss_pred HHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-Ccc--------hHHHHHHHHHhhhcchhhH
Q 037996 347 LVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPG--------SVYVASVIIGFSFGAQLPL 417 (535)
Q Consensus 347 ~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~--------~~~~~~~l~g~~~g~~~~~ 417 (535)
+..++..+|.++.|+++||+||| ..+..+.++.+++.++..+. +.. .+.+..++.|++.|...+.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~ 145 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRK------RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGG 145 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Confidence 33455778889999999999654 56667777777777766654 332 3666788999999999998
Q ss_pred HHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHH
Q 037996 418 IFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACV 497 (535)
Q Consensus 418 ~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 497 (535)
...++.|.+|+++|+...+.......+|..+ ++.+...+......... ...+||..|++.++.
T Consensus 146 ~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l-~~~~~~~l~~~~~~~~~----------------~~~gWr~~f~~~~~~ 208 (438)
T PRK09952 146 AALLAVESAPKNKKAFYSSGVQVGYGVGLLL-STGLVSLISMMTTDEQF----------------LSWGWRIPFLFSIVL 208 (438)
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHh----------------hccChHHHHHHHHHH
Confidence 8899999999999999999888888888755 76666555432111100 022499999877655
Q ss_pred HH
Q 037996 498 TC 499 (535)
Q Consensus 498 ~~ 499 (535)
.+
T Consensus 209 ~l 210 (438)
T PRK09952 209 VL 210 (438)
T ss_pred HH
Confidence 43
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.6e-09 Score=103.88 Aligned_cols=179 Identities=9% Similarity=0.034 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHhhhhchhhhhc-chHHHHhhcCCCCccchhhHHHHHH-hhHHHHHHhhhhchhhhhccCCCchHHHHH
Q 037996 303 SIDMLILFVATFGGLGSSLTAID-NLGQIGESLGYPTKTIKSFVSLVSI-WNYFGRVFAGFVSEGLLAKYKMPRPLMLTL 380 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~a~~~~~~~~i-~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~ 380 (535)
|.+.+..++..++.......+.. ...++.+++|.|+.+.++..+...+ +..++.+.+++ +||+++|| ..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~-----~~~~~ 87 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRK-----SLIVF 87 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccchh-----HHHHH
Confidence 44455555554443333223333 3444556789999999998776555 55556666666 99998653 33333
Q ss_pred HHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcc--cchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 381 VLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYY--STLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 381 ~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
+.++..++..++... +.+.+.+...+.+...+...+....++.+..+++.| +...++.+....+|..+ +|++.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~i~~~l 166 (393)
T PRK15011 88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVI-GPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 344444444334443 334443343444433345556666777776655544 23346777888899966 99999999
Q ss_pred hhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 458 YDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
.++.+ |+..|++.++..++..++..+..++.
T Consensus 167 ~~~~g------------------------w~~~f~~~~~~~~~~~~~~~~~~~~~ 197 (393)
T PRK15011 167 AMGFS------------------------FTVMYLSAAVAFIVCGVMVWLFLPSM 197 (393)
T ss_pred HHhcC------------------------hHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 88744 99999988877776665555444443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=90.34 Aligned_cols=99 Identities=20% Similarity=0.122 Sum_probs=81.7
Q ss_pred cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCc
Q 037996 41 VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRG 119 (535)
Q Consensus 41 ~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg 119 (535)
..++.|++.||+|||+.+..+..+..++.+..... ++++.+.+.+++.|++.+..++.....+.|.+| ++|+
T Consensus 14 ~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (141)
T TIGR00880 14 YSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG 86 (141)
T ss_pred HHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence 48899999999999999999988888776554332 457888889999999999999999999999997 5799
Q ss_pred chhhhhHHhhhhhHHHHHHHHHHHhcC
Q 037996 120 NMIGLLKGFTGLSGAILTQVYLAVYGN 146 (535)
Q Consensus 120 ~~~g~~~~~~~lg~~i~~~~~~~~~~~ 146 (535)
+++++......+|..+.+.+...+.+.
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 87 VALGLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred HHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence 999999888888887776666655544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=103.68 Aligned_cols=146 Identities=18% Similarity=0.026 Sum_probs=109.7
Q ss_pred HHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHH
Q 037996 306 MLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLS 385 (535)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 385 (535)
+..+.+.++.............|.+.+++|.++.+.++..+.+.++..++.+..|++.||+|+| ..+..+.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r------~~l~~g~~~~ 101 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLY 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHH
Confidence 3444444443333333344567778788999999999999999999999999999999999644 5666777777
Q ss_pred HHHHHHH---hc-cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhh
Q 037996 386 CIGLLLI---AF-PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLY 458 (535)
Q Consensus 386 ~i~~~~~---~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~ 458 (535)
.++.+++ .. ++...+.+..++.|++.+...+....++.|..+++++....++......+|..+ +|.+.+.+.
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~-g~~~g~~l~ 177 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7776554 22 355677788899999999998888888888766555556788888888888876 887766543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-09 Score=107.72 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=114.9
Q ss_pred HHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH
Q 037996 298 LQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM 377 (535)
Q Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 377 (535)
+.-+|+|.|..+++.......+........+.+..+..-|+...+++.....+..++..+++|.+.||+.|| .+
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drr------ri 77 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRR------RI 77 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch------HH
Confidence 345788888888877664433332222223333444455667778888888888899999999999999654 34
Q ss_pred HHHHHHHHHHHHHH---Hh-c--cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhH
Q 037996 378 LTLVLVLSCIGLLL---IA-F--PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNV 451 (535)
Q Consensus 378 ~~~~~~~~~i~~~~---~~-~--~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p 451 (535)
+..+-++..+.... +. . .+.+.+++..++.|++.....|...+++.|+.|+++...+.++..+..++...+ ||
T Consensus 78 li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i-GP 156 (524)
T PF05977_consen 78 LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII-GP 156 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc-cc
Confidence 44444433322221 11 1 255678888899999999999999999999999999999999999999999977 99
Q ss_pred hHhHhhhhhhh
Q 037996 452 KVTGSLYDHQA 462 (535)
Q Consensus 452 ~i~g~l~~~~~ 462 (535)
.++|.+....+
T Consensus 157 algG~Lva~~G 167 (524)
T PF05977_consen 157 ALGGILVAFFG 167 (524)
T ss_pred hHHHHHHHHHH
Confidence 99999988754
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.8e-09 Score=105.04 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=102.4
Q ss_pred HHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHH
Q 037996 309 LFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIG 388 (535)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~ 388 (535)
+...++..+..........|.+.+++|++..+.++..+...+...++.+++|.++||++|+.. .+..+..+..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII--ALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHHH-
Confidence 334444433333335566777788999999999999999999999999999999999865321 11111122211111
Q ss_pred HHHHhc-cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 389 LLLIAF-PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 389 ~~~~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
..... .+.+.+++...+.+.+.+...+...+++.+. .++++..+|.......+|..+ +|++.|.+.++.+
T Consensus 86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~-g~~l~g~l~~~~g 156 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFII-GSALFGGLIGMFD 156 (382)
T ss_pred -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 12222 3456666677778888777778777776553 478899999999999999976 9999999998754
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-08 Score=101.57 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=102.5
Q ss_pred hcchHHHHhhcC---CCCccch---hhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-C
Q 037996 324 IDNLGQIGESLG---YPTKTIK---SFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-F 396 (535)
Q Consensus 324 ~~~~~~~~~~~g---~~~~~a~---~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~ 396 (535)
....+++.++++ .+..+.+ ...+...++..+|.+++|+++||+||| ..+..+.++..++.+..... +
T Consensus 42 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr------~~l~~~~~~~~~~~~~~~~~~~ 115 (432)
T PRK10406 42 SFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRK------KSMLISVCMMCFGSLVIACLPG 115 (432)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHhhcCC
Confidence 334566666664 3333222 234445566669999999999999654 56667777777776666543 3
Q ss_pred c--------chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhh
Q 037996 397 P--------GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAK 468 (535)
Q Consensus 397 ~--------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~ 468 (535)
. ..+++..++.|++.|..++...+++.|.+|+++||...++.......|.++ ++.+...+.........+
T Consensus 116 ~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~- 193 (432)
T PRK10406 116 YETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL-ALLVVVVLQQTLEDAELR- 193 (432)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHh-
Confidence 2 246778889999999999999999999999999999988887766666654 655543333211100000
Q ss_pred hcCCCCCcccccccccccchHHHHHHHHHHHH
Q 037996 469 KGMNRSDVKELICIGVKCYRLPFIILACVTCF 500 (535)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 500 (535)
..+||..|++.++..++
T Consensus 194 ---------------~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 194 ---------------EWGWRIPFALGAVLAVV 210 (432)
T ss_pred ---------------ccchHHHHHHHHHHHHH
Confidence 22499999876665544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=110.31 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=115.5
Q ss_pred chHHHHhhcCCC---CccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 326 NLGQIGESLGYP---TKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 326 ~~~~~~~~~g~~---~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
..+.+.++.+++ +.+.++..+++.++..+|.++.|+++||+||| ..+..+.++..++.++.... +.+.++
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr------~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRK------KVLLLSTLVTAVSGVLTAFSPNYTVFL 184 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccch------HHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 345566677887 77889999999999999999999999999654 45566666666666555544 667788
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+....++.|.+|+++|+.+.++......+|.++ +|.+...+ ..
T Consensus 185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~-~~--------------------- 241 (505)
T TIGR00898 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-LPLVAYFI-PD--------------------- 241 (505)
T ss_pred HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHH-HHHHHHHh-hH---------------------
Confidence 88899999999999999999999999999999999998888888755 76664333 22
Q ss_pred cccccchHHHHHHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
|+..|++.++..++..+..+
T Consensus 242 -----wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 242 -----WRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 78888888777766655553
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=105.19 Aligned_cols=180 Identities=14% Similarity=0.038 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHH
Q 037996 302 LSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLV 381 (535)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 381 (535)
++|+.+.++...+.............+.+.++.|.|..+.+.+ +...... ++++++|+++||+.+.+.-+|+..+..+
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 3444444444333333333334455677778889888888776 3333332 6889999999998221110122334455
Q ss_pred HHHHHHHHHHHhcc----CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 382 LVLSCIGLLLIAFP----FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 382 ~~~~~i~~~~~~~~----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
.+..+++...+... +.+.+.+..++.+++.+...+...+++.|.+|+++|+.+.++......+|..+ ++.+.+++
T Consensus 88 ~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll-g~~l~~~l 166 (491)
T PRK11010 88 QLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLV-SGGLALWL 166 (491)
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55555554444332 23456666778888888888888999999999999999999999999999966 88888888
Q ss_pred hhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHH
Q 037996 458 YDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
.++ ..+|+..|++.+++.++..+..++
T Consensus 167 ~~~-----------------------~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 167 ADR-----------------------YLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred Hhc-----------------------ccCHHHHHHHHHHHHHHHHHHHHh
Confidence 773 123999999988877766554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-08 Score=103.82 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=92.8
Q ss_pred CCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-C------cchHHHHHHHHH
Q 037996 336 YPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-F------PGSVYVASVIIG 408 (535)
Q Consensus 336 ~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~------~~~~~~~~~l~g 408 (535)
.++.+.+++.+...++..++.+++|+++||+||| ..+..+.++..++.++.... + ...+++..++.|
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G 126 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK------RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG 126 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHH
Confidence 3344567889999999999999999999999654 45556666666665554432 2 245778889999
Q ss_pred hhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 409 FSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 409 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
++.|...+..+.++.|.+|++.|+++.++......+|..+ ++.+...+..
T Consensus 127 ~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~-g~~~~~~~~~ 176 (502)
T TIGR00887 127 VGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA-GAIVALIVLA 176 (502)
T ss_pred HHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999866 8777665543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=117.96 Aligned_cols=161 Identities=9% Similarity=0.007 Sum_probs=107.7
Q ss_pred HhhhhHHHHHHHHHHHhhhhchh----hhhcchHHHHh-hcCCCC-ccchhhHHHHHHhhHHHHHHhhhhchhhhhccCC
Q 037996 299 QALLSIDMLILFVATFGGLGSSL----TAIDNLGQIGE-SLGYPT-KTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKM 372 (535)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~g~~~-~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~ 372 (535)
.++++++|+.+++..++...... .+.....+... +.+.+. ...++..+++.+...+..+++|+++||++||+.+
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 45677777776665544332211 11222222211 222222 2356667788899999999999999999766321
Q ss_pred CchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHh
Q 037996 373 PRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVK 452 (535)
Q Consensus 373 ~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~ 452 (535)
+.+.....+....+.+.+...+.+.+++..++.|++.+...+...+++.+.+++++++.++|+..+...+|..+ ||.
T Consensus 86 --~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i-gp~ 162 (1140)
T PRK06814 86 --KILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL-GTI 162 (1140)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH-HHH
Confidence 01111222222222222233467788889999999999999999999999999999999999999999999977 999
Q ss_pred HhHhhhhhhh
Q 037996 453 VTGSLYDHQA 462 (535)
Q Consensus 453 i~g~l~~~~~ 462 (535)
++|++.+..+
T Consensus 163 l~g~l~~~~~ 172 (1140)
T PRK06814 163 IGGLATISGN 172 (1140)
T ss_pred HHHHHHhccc
Confidence 9999988643
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=101.87 Aligned_cols=151 Identities=15% Similarity=0.053 Sum_probs=110.3
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhh-----hhccCCCchHHHHHHHHHHHHHHHHHhcc--
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGL-----LAKYKMPRPLMLTLVLVLSCIGLLLIAFP-- 395 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~-----~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-- 395 (535)
....+|.+.++.|+|..+.+++..+... .+..+++|+++||+ |||| ..+..+.++.+++...+...
T Consensus 18 ~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr-----~~l~~~~~~~~l~~~~l~~~~~ 90 (402)
T PRK11902 18 TSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRR-----GWLLLTQVGLAASIAAMAFCPP 90 (402)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcch-----hHHHHHHHHHHHHHHHHHhcCc
Confidence 3456777888999999999988665554 58899999999999 5432 33445555555554444432
Q ss_pred --CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCC
Q 037996 396 --FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNR 473 (535)
Q Consensus 396 --~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~ 473 (535)
+.+.+.+..++.+++.+...+...+++.|.+|+|+|+++.++......+|..+ ++.+.+.+.+..
T Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~-g~~l~~~l~~~~------------ 157 (402)
T PRK11902 91 HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV-SGGLALWLADRV------------ 157 (402)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH-HhHHHHHHHhcc------------
Confidence 12334445556677777777888999999999999999999999988888866 888888877642
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHHH
Q 037996 474 SDVKELICIGVKCYRLPFIILACVTCFGALV 504 (535)
Q Consensus 474 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l 504 (535)
.+|+..|++.+++.++..+.
T Consensus 158 -----------~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 158 -----------LGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred -----------cCHHHHHHHHHHHHHHHHHH
Confidence 23999999888777655443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=100.28 Aligned_cols=169 Identities=16% Similarity=0.026 Sum_probs=113.0
Q ss_pred hcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc----Ccch
Q 037996 324 IDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP----FPGS 399 (535)
Q Consensus 324 ~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~----~~~~ 399 (535)
....+.+.++.|+|.++.++.... .+...+ .+++|+++||+..|+.=.|+..+..+.++.++....+.+. +.+.
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~ 85 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL 85 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 345677888999999998888644 444444 8999999999843211022233445555555554444432 1223
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccc
Q 037996 400 VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKEL 479 (535)
Q Consensus 400 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~ 479 (535)
+....++.+++.+...+...+++.|.+|+|+|+.+.|+......+|.++ ++.+.+.+.+..+...
T Consensus 86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~g~~~-------------- 150 (356)
T TIGR00901 86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL-SGSLALVLASPEFANT-------------- 150 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH-HHHHHHHHhhhccccc--------------
Confidence 4444556677777777788899999999999999999999999999866 8888888876633110
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 480 ICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
....+|+..|++.+++.+++.+..++..+|
T Consensus 151 --~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e 180 (356)
T TIGR00901 151 --GLITLWGYIFFWTALLILPGLLVTLFLAKE 180 (356)
T ss_pred --ccccccHHHHHHHHHHHHHHHHHHHHhccC
Confidence 012349999988888776655544444333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=102.07 Aligned_cols=148 Identities=15% Similarity=0.077 Sum_probs=106.5
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~ 401 (535)
+...+|.+.++.|.+..+.++..+...+...++.+++|.++||++|++.. ++... +..... ....... ++.+.++
T Consensus 23 ~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~-~~~~~-~~~~~~--~~~~~~~~~~~~~l~ 98 (382)
T PRK11128 23 FLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPA-LRLLA-LLTLLF--AVAFWFGAHSFWLLF 98 (382)
T ss_pred HhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHH-HHHHH-HHHHHH--HHHHHHhcccHHHHH
Confidence 44556667788999999999999999999999999999999999864211 11222 111111 1112222 3455666
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+...+++.+. .++++.+++.....+.+|..+ +|.+.+.+.++.+
T Consensus 99 i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~i-gp~lgg~l~~~~g------------------- 156 (382)
T PRK11128 99 VAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVI-GSALTGKLVSWFG------------------- 156 (382)
T ss_pred HHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHH-HHHHHHHHHHHcC-------------------
Confidence 777778888888778777766654 367888999999999999876 9999999998754
Q ss_pred cccccchHHHHHHHHHHHHH
Q 037996 482 IGVKCYRLPFIILACVTCFG 501 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~ 501 (535)
|+..|++.++..++.
T Consensus 157 -----~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 157 -----EQAILWILTAGVASM 171 (382)
T ss_pred -----hhHHHHHHHHHHHHH
Confidence 888888776544433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-08 Score=98.72 Aligned_cols=147 Identities=21% Similarity=0.308 Sum_probs=122.7
Q ss_pred cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc---CcchHHHHHHHHHhh
Q 037996 334 LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP---FPGSVYVASVIIGFS 410 (535)
Q Consensus 334 ~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~l~g~~ 410 (535)
+|+|++++.-+++.+...--+..+++||++||+- +++..++++.+++.++.+++..+ .+..+++.++++++|
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-----G~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG 130 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-----GTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVG 130 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhc
Confidence 4599999988888888777788999999999973 45566788999999999888766 356889999999999
Q ss_pred hcchhhHHHHHHHHhhccC--cccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccch
Q 037996 411 FGAQLPLIFAIISELFGLK--YYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYR 488 (535)
Q Consensus 411 ~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (535)
.|..=+....+++|.+|++ +|-..+++.++..++|+++ +|.+.+++.+..+ |+
T Consensus 131 ~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~-~p~i~~~~~~~~g------------------------~~ 185 (498)
T COG3104 131 TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI-APIITGLLAINYG------------------------WH 185 (498)
T ss_pred cccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH-HHHHHHHHHHhhC------------------------HH
Confidence 9999999999999999964 5777888899999999977 9999999988854 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 037996 489 LPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 489 ~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
..|...++-..++.+..+..++
T Consensus 186 ~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 186 VGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 9999988888877665554443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=97.50 Aligned_cols=176 Identities=16% Similarity=0.110 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHH
Q 037996 304 IDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLV 383 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 383 (535)
|++|.-++.+...+..-+.+....+.+.+++++|+.|.+++.++..+.+.+.|+.-|.+.||+| +|++. ..+.+
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG-----gR~~~-~~s~~ 87 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG-----GRKWT-ILSML 87 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC-----chHHH-HHHHH
Confidence 4455555544444444333444555666888999999999999999999999999999999998 44444 34555
Q ss_pred HHHHHHHHHhcc----CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 384 LSCIGLLLIAFP----FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 384 ~~~i~~~~~~~~----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
+..+-.+.+... +.+.++++.++.|++ |+.++.....+++.||+|++|.+.|+.. .+++|..+ ...+...+..
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av-~q~~~P~v~~ 164 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV-AQLVAPLVAV 164 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHH-HHHHHHHHHH
Confidence 544444443332 334677777788876 4557777789999999999999999998 77777765 6666666665
Q ss_pred hhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 460 HQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
..+ .+.|+.+..+.....++..++.++..
T Consensus 165 ~~g---------------------~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 165 AFG---------------------FLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred HHh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 532 11277777777777777666655543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.5e-08 Score=98.34 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhh-HHHH-----HHhhHHHHHHhhhhchhhhhccCCCchHHHHHH
Q 037996 308 ILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSF-VSLV-----SIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLV 381 (535)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~-~~~~-----~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 381 (535)
..++..++.+.-...+....|.+.++++.++.+.+.+ .+.. .+...+|.++.|+++||+||| ..+..+
T Consensus 19 ~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr------~~l~~~ 92 (434)
T PRK15075 19 RVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR------KGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH------HHHHHH
Confidence 3334444444444445566778888888877665433 2222 233357889999999999654 456667
Q ss_pred HHHHHHHHHHHhcc-Ccc--------hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHh
Q 037996 382 LVLSCIGLLLIAFP-FPG--------SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVK 452 (535)
Q Consensus 382 ~~~~~i~~~~~~~~-~~~--------~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~ 452 (535)
.++..++.++.... +.. .+++..++.|++.+...+....++.|.+|+++|+++.++.....+++..+ ++.
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~-g~~ 171 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF-AAL 171 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH-HHH
Confidence 77777776666654 333 24667889999999888888899999999999999999998888877755 766
Q ss_pred HhHhhh
Q 037996 453 VTGSLY 458 (535)
Q Consensus 453 i~g~l~ 458 (535)
+.+.+.
T Consensus 172 ~g~~l~ 177 (434)
T PRK15075 172 LGYLLN 177 (434)
T ss_pred HHHHHH
Confidence 665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=102.20 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=115.4
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchh----hhhccCCCchHHHHHHHHHHHHHHHHHhcc-Cc--
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEG----LLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FP-- 397 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr----~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~-- 397 (535)
.+.+.+.++.|.+....+.+..+..+.+.+..++.|+++|| +|||+ ..+..+.+...++++++... +.
T Consensus 25 ~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr-----p~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 25 SLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR-----PFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH-----HHHHHHHHHHHHHHHHHHhCchhhh
Confidence 44555678899999999999999999999999999999996 65442 33444555555555555432 11
Q ss_pred ---------------chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcc--cchhhHHhhhhhhHHHHHhHhHhHhhh--
Q 037996 398 ---------------GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYY--STLFNCGQLASPLGSYILNVKVTGSLY-- 458 (535)
Q Consensus 398 ---------------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~ig~~i~~p~i~g~l~-- 458 (535)
....+...+..++.....+...++++|.+|++++ +.++++.....++|+.+ ++.+.++..
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il-g~~~g~~~~~~ 178 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL-GYAAGAYSGLY 178 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHH
Confidence 1122233344556777777888999999998865 57899999999999966 877766542
Q ss_pred hhhhhhHhhhhcCCCCCcccccc-cccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037996 459 DHQAVKELAKKGMNRSDVKELIC-IGVKCYRLPFIILACVTCFGALVSFILVIRTR 513 (535)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~ 513 (535)
+...- .....| .--.+++..|.+.+++.+++.++..+..+|..
T Consensus 179 ~~~~~------------~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 179 KIFPF------------TKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred Hhccc------------ccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 11100 000111 11235889999988888888877777666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=96.64 Aligned_cols=114 Identities=23% Similarity=0.179 Sum_probs=94.7
Q ss_pred CccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhh
Q 037996 338 TKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLP 416 (535)
Q Consensus 338 ~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~ 416 (535)
..-++.+-+.+++..++.++.+|.++||+|| +..+.++.+..++..++.+.. +...++...++.|++-|- .+
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGR------kpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~ 139 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGR------KPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LS 139 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hH
Confidence 3457888999999999999999999999954 467777777777776666665 444455558888887664 57
Q ss_pred HHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 417 LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 417 ~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
+.-++++|++++|+|+.+++.+++..++|-.+ ||.++|++..
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfil-GPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFIL-GPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhh-cchhhhHHHh
Confidence 88899999999999999999999999999966 9999999987
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-07 Score=94.73 Aligned_cols=123 Identities=22% Similarity=0.261 Sum_probs=92.8
Q ss_pred hhcCCCCccchhhHHHHHHhhHHHHHHhh-hhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhh
Q 037996 332 ESLGYPTKTIKSFVSLVSIWNYFGRVFAG-FVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFS 410 (535)
Q Consensus 332 ~~~g~~~~~a~~~~~~~~i~~~ig~~~~G-~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~ 410 (535)
..+++++.+.+.+.+..++.+.++..+.. .+.-.++.| .....+.+.-.+....+++.+..+.+.........
T Consensus 270 ~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~------~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~ 343 (463)
T KOG2816|consen 270 AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK------RLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL 343 (463)
T ss_pred eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Confidence 35699999999998888888888888888 455555433 35567777777777777777543443333444444
Q ss_pred hcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 411 FGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 411 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
.....+..-+.++...+++++|+++++......+.+.+ +|.+.+.++...
T Consensus 344 ~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~-~~~~~~~i~~~t 393 (463)
T KOG2816|consen 344 AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVV-SPALYGNIFALT 393 (463)
T ss_pred hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhh-hHHHHHHHHHHH
Confidence 55667788888999999999999999999999999977 899999887653
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-06 Score=87.03 Aligned_cols=95 Identities=12% Similarity=-0.034 Sum_probs=74.3
Q ss_pred HHHhhhhccccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcChhhHhhhhhhhH
Q 037996 31 LGFFKDLGANVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTC 110 (535)
Q Consensus 31 ~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~ 110 (535)
....+....+..++.+.+.|+.|+|+.+.+|...+..-.+.. .. +|-+.++....+.|+|.+..+..--.++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf-------l~-~N~y~~yfssallG~Gaallw~GqG~yl 127 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF-------LF-PNSYYLYFSSALLGFGAALLWTGQGGYL 127 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH-------Hh-cchHHHHHHHHHhhhhHHheecccceeh
Confidence 455555666679999999999999999999998877653322 22 4567888999999999999999889999
Q ss_pred hhhcC-CCCcchhhhhHHhhhhhH
Q 037996 111 VKNFP-ESRGNMIGLLKGFTGLSG 133 (535)
Q Consensus 111 ~~~fp-~~rg~~~g~~~~~~~lg~ 133 (535)
+++.. +++.+..++..+....+.
T Consensus 128 t~~st~~tie~Nisi~Wai~~~~l 151 (461)
T KOG3098|consen 128 TSNSTRETIERNISIFWAIGQSSL 151 (461)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHH
Confidence 99995 568888888776654443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=100.88 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=118.6
Q ss_pred hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhhh
Q 037996 332 ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSF 411 (535)
Q Consensus 332 ~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~ 411 (535)
++.++...+.+.+.+++.++.++|.+.++.+.||+.- ++.+...+..-...+.+-....+.+.+++..++.|++-
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l-----s~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL-----SKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE 148 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4567777889999999999999999999999999941 11222222222222222223447888999999999999
Q ss_pred cchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHH
Q 037996 412 GAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPF 491 (535)
Q Consensus 412 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 491 (535)
+..+|....+++.-|+++++|...|+.+....+|+++ |..+...+....+.. +..+|++.|
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~-ggliA~g~~~~~~~~------------------~~~gW~~~F 209 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIF-GGLIAYGVFKLNGSG------------------GLAGWRWLF 209 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHH-HHHHHHHhhhhcCCC------------------CcCCceeeh
Confidence 9999999999999999999999999999999999965 888877765532211 144699999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037996 492 IILACVTCFGALVSFILVI 510 (535)
Q Consensus 492 ~~~~~~~~~~~~l~~~l~~ 510 (535)
++-++++++..+++++..+
T Consensus 210 iI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 210 IIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred hHHHHHHHHHHheEEEEec
Confidence 9999999888877766544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-08 Score=99.98 Aligned_cols=141 Identities=21% Similarity=0.224 Sum_probs=112.1
Q ss_pred chhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHH
Q 037996 341 IKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIF 419 (535)
Q Consensus 341 a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~ 419 (535)
.+++.+...++..+|.+++|+++|++||| ..+.++.++..++.++...+ +...++++.++.|+|.|....+.+
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk------~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~p 164 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRK------KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcch
Confidence 37999999999999999999999999654 66777788888887777665 677899999999999999999999
Q ss_pred HHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHH
Q 037996 420 AIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTC 499 (535)
Q Consensus 420 ~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 499 (535)
.+++|..|++.||...+.......+|.++ + .+.++..++.. ..||..+.+..+.++
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~-~-~~~~~~~~~~~----------------------~~Wr~~~~~~~i~~~ 220 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILL-G-YCINYGTSKVY----------------------AGWRIPLGLALIPAV 220 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHH-H-HHHhhhhccCC----------------------ccHHHHHHHHHHHHH
Confidence 99999999999999999999888877755 6 56665554410 138988877777776
Q ss_pred HHHHHHHHHHhhh
Q 037996 500 FGALVSFILVIRT 512 (535)
Q Consensus 500 ~~~~l~~~l~~~~ 512 (535)
+-.+. +++.+|.
T Consensus 221 ~~~~~-~~~~pes 232 (513)
T KOG0254|consen 221 ILALG-MLFLPES 232 (513)
T ss_pred HHHHH-HHhCCCC
Confidence 66655 4444433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-08 Score=104.39 Aligned_cols=148 Identities=17% Similarity=0.123 Sum_probs=118.9
Q ss_pred hhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhh
Q 037996 332 ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFS 410 (535)
Q Consensus 332 ~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~ 410 (535)
+....+.....+..+++.++..+|.+++|.++||+| |+..+..+.++..++.+..++. +.+.+++..++.|++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~G------Rk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~ 184 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFG------RKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFF 184 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcc------cHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 334566667778888999999999999999999985 5567778888887777666655 678899999999999
Q ss_pred hcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHH
Q 037996 411 FGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLP 490 (535)
Q Consensus 411 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (535)
.++.......++.|.+++++|+.+..+ ......++.. .|.+.+++... ||..
T Consensus 185 ~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~-~~~~~a~~~~~--------------------------Wr~~ 236 (521)
T KOG0255|consen 185 GSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLM-LPAGAAYITRD--------------------------WRWL 236 (521)
T ss_pred ccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHH-HHHHHHHHHhh--------------------------HHHH
Confidence 999999999999999999999999999 6666666655 78888888775 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 491 FIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 491 f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
+++..+..++.+++ .++.+|.+|
T Consensus 237 ~~~~~~~~~~~~~~-~~l~~Es~r 259 (521)
T KOG0255|consen 237 FWIISIPSGLFLLL-WFLPPESPR 259 (521)
T ss_pred HHHHHHHHHHHHHH-HHccCcChH
Confidence 99888877776655 344434443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.7e-08 Score=110.40 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=108.8
Q ss_pred HhhhhHHHHHHHHHHHhhhhchh-hhhcchHHHHhhcCCCCc--cchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCch
Q 037996 299 QALLSIDMLILFVATFGGLGSSL-TAIDNLGQIGESLGYPTK--TIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRP 375 (535)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~--~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~ 375 (535)
..++++.|+.+++..++...... ......+.+...++.+.. ..++..+++.++..++.+++|+++||+|||
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk------ 77 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN------ 77 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH------
Confidence 35577777777665554322221 122233334444554332 357778888999999999999999999765
Q ss_pred HHHHHHHHHHHHHHHHH---h-ccCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhH
Q 037996 376 LMLTLVLVLSCIGLLLI---A-FPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNV 451 (535)
Q Consensus 376 ~~~~~~~~~~~i~~~~~---~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p 451 (535)
..+..+.++..+..++. . ..+.+.+++..++.|++.+...+...+++.|.+|+++|+.++|+......+|..+ +|
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l-g~ 156 (1146)
T PRK08633 78 RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA-GT 156 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH-HH
Confidence 34444443333322221 1 2345677788889999999989999999999999999999999999999999966 99
Q ss_pred hHhHhhhhh
Q 037996 452 KVTGSLYDH 460 (535)
Q Consensus 452 ~i~g~l~~~ 460 (535)
.+++++.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 999988765
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-08 Score=99.81 Aligned_cols=148 Identities=17% Similarity=0.193 Sum_probs=123.4
Q ss_pred hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc---CcchHHHHHHHHHh
Q 037996 333 SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP---FPGSVYVASVIIGF 409 (535)
Q Consensus 333 ~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~l~g~ 409 (535)
++.++..+-+++.+.+..+..++.+.+|++.||+|.| .++..+.++.+++.++.... +.+.+++..++.|+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r------~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR------RVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 4577888899999999999999999999999999744 45566666777766665433 44577888999999
Q ss_pred hhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchH
Q 037996 410 SFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRL 489 (535)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (535)
+.|..++.+..+..+-.|+++|++..++...+..+|.++ +-++.|++-+. ..+|+.
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~-~mp~sg~lc~s-----------------------~~GW~s 196 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTII-TMPVSGLLCES-----------------------SLGWPS 196 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhcc-----------------------CCCCch
Confidence 999999999999999999999999999999999999977 77799999887 234999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 037996 490 PFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 490 ~f~~~~~~~~~~~~l~~~l~~ 510 (535)
.|++.+++.++-.++.+++..
T Consensus 197 ifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999988887766655554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.4e-07 Score=85.68 Aligned_cols=87 Identities=10% Similarity=-0.034 Sum_probs=69.7
Q ss_pred HHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037996 16 DIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICI 94 (535)
Q Consensus 16 ~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l 94 (535)
.+-+++|.+..|++.+....+.... ++++.|.++||+|||+..++-+++..++.+. -.. ++++.+++.|++
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~------k~~--~~~~~L~~GRvl 130 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT------KHS--SNYPVLLLGRVL 130 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH------Hhc--cccHHHHHHHHH
Confidence 3446899999999997766666664 5999999999999999998888887777432 222 569999999999
Q ss_pred hhcChhhHhhhhhhhH
Q 037996 95 GANSQNFANTGALVTC 110 (535)
Q Consensus 95 ~Gig~g~~~~~~~~~~ 110 (535)
.|++....+.+--+..
T Consensus 131 gGiaTSLLfS~FEsW~ 146 (354)
T PF05631_consen 131 GGIATSLLFSAFESWM 146 (354)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999887665543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=96.91 Aligned_cols=156 Identities=11% Similarity=0.067 Sum_probs=102.3
Q ss_pred ccHHHHHHcCCCh--------hhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 037996 13 YSKDIKASLGYDQ--------STLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKP 83 (535)
Q Consensus 13 ~~~~l~~~~~~s~--------~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 83 (535)
+.|...++.|.++ ++.+...+...+..+ ..++.|++.||+|+|+++.++.++..++..+... . .....
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~--~-~~~~~ 306 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY--G-DPEYF 306 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--c-Ccchh
Confidence 3355555666554 344554444444443 4889999999999999999999988777544322 1 11111
Q ss_pred hHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhH-HhhhhhHHHHHHHHHHHhcC-------ChhHHHHH
Q 037996 84 AVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLK-GFTGLSGAILTQVYLAVYGN-------DSKSLILL 154 (535)
Q Consensus 84 ~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~-~~~~lg~~i~~~~~~~~~~~-------~~~~~~~~ 154 (535)
+.+.+++.+++.|++.+...+....++.|++| ++||+++|+.. ...++|..+.+.+.+.+.+. ++...+.+
T Consensus 307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~ 386 (418)
T TIGR00889 307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF 386 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence 34567788999999999988888889999998 57999999996 56678887766666655543 12333344
Q ss_pred HHHHHHHHHHHHHhhhc
Q 037996 155 IGWLPAAISVIFVYTIR 171 (535)
Q Consensus 155 ~~~~p~~~~~~~~~~~~ 171 (535)
.++..++..++..++++
T Consensus 387 ~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 387 FAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 44444444444444444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.6e-08 Score=100.43 Aligned_cols=168 Identities=11% Similarity=0.117 Sum_probs=110.7
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCc------
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFP------ 397 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~------ 397 (535)
+..+++.++.|+++.+++.+.++..+...+..++.|+++||.++|++. |+..+..+.+...++.+++.. ++.
T Consensus 21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Gr-rr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGK-FRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCC-cchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 345566667899999999999999999999999999999998765532 234455565566655554433 221
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhh-ccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCc
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELF-GLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 476 (535)
....+..++.+.+.+.......++..|.. ++++|++..+.......+|+.+ ++.+.+.+....+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~~----------- 167 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL-VAVIVLPLVSYFGGGD----------- 167 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc-----------
Confidence 12333445566666665556667777876 4678999999988888888765 5555555544321000
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 477 KELICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 477 ~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
...+|+..+.+.+++.++..++..+..+|
T Consensus 168 ------~~~g~~~~~~i~~~l~~~~~~~~~~~~~e 196 (437)
T TIGR00792 168 ------DKFGWFMFALVLALIGVVSLIICFFGTKE 196 (437)
T ss_pred ------ccccHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 02248888888887777665555444433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=95.28 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=122.8
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHH-H
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYV-A 403 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~-~ 403 (535)
..+.+.++++.+..+++++.++......+..++.+.+.||+|.| ....++.++..+++++..+. +.+.+++ .
T Consensus 68 ~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R------~v~i~G~~v~~~g~~lssF~~~i~~l~lt~ 141 (509)
T KOG2504|consen 68 LFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCR------TVMIAGGLVAALGLLLSSFATSLWQLYLTF 141 (509)
T ss_pred hHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCch------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45566678888888899999999999999999999999999755 56778888999998887776 4444444 5
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
.++.|+|.+..+.....++...|. |+|+.+.|+.....++|.+++ |.+..++.+..+
T Consensus 142 gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~~G--------------------- 198 (509)
T KOG2504|consen 142 GVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVF-PPLLKYLLSKYG--------------------- 198 (509)
T ss_pred HHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeH-HHHHHHHHHHhC---------------------
Confidence 677799999988888888887775 999999999999999999885 677788888765
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 484 VKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
|++++.+.+.+.+-.++....+++
T Consensus 199 ---~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 199 ---WRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999888887665555544443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.7e-07 Score=89.68 Aligned_cols=129 Identities=21% Similarity=0.239 Sum_probs=91.2
Q ss_pred HhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-Ccc--------hHHHHHHHHHhhhcchhhHHHH
Q 037996 350 IWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPG--------SVYVASVIIGFSFGAQLPLIFA 420 (535)
Q Consensus 350 i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~--------~~~~~~~l~g~~~g~~~~~~~~ 420 (535)
+...++.++.|+++||+||| ..+..+.++..++.++.... +.. .+++..++.|++.+...+....
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 119 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRK------KTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL 119 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhH------HHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 34457899999999999654 45566777777776665543 322 3556678889998888888899
Q ss_pred HHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHH
Q 037996 421 IISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCF 500 (535)
Q Consensus 421 ~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 500 (535)
++.|.+++++|+...++......+|..+ ++.+.+.+....+.... ...+|+..|.+.+++.++
T Consensus 120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~~~~~~~~~~~----------------~~~~w~~~~~~~~~~~~~ 182 (394)
T TIGR00883 120 YLAEYAPPGKRGFYGSFQQVGAPVGLLL-AALTVLLLSYLLGDDAL----------------LEWGWRIPFLVSAVLVLI 182 (394)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHh----------------hccchHHHHHHHHHHHHH
Confidence 9999999999999999999988888866 87776655432110000 022488888876665554
Q ss_pred H
Q 037996 501 G 501 (535)
Q Consensus 501 ~ 501 (535)
+
T Consensus 183 ~ 183 (394)
T TIGR00883 183 G 183 (394)
T ss_pred H
Confidence 4
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.3e-07 Score=92.62 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=99.5
Q ss_pred hhhcchHHHHhhcCCCCccchhh--HHHHHHhhHHHHHHh-hhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-c--c
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSF--VSLVSIWNYFGRVFA-GFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-F--P 395 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~--~~~~~i~~~ig~~~~-G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~--~ 395 (535)
......|.+.++.|.|..+.+.+ .++..+..++..+++ ++.+||.|||| .+.+... ++.......+. . .
T Consensus 19 ~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~----~~i~~~~-~~~~~~~~~~~~~~~~ 93 (390)
T TIGR02718 19 LAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR----SWVLPMQ-CLVSACLASLALVGPD 93 (390)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch----hHHHHHH-HHHHHHHHHHHcCCcc
Confidence 34567888889999999999987 456677777777777 44677776553 2322222 21121111111 1 1
Q ss_pred -C-cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCC
Q 037996 396 -F-PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNR 473 (535)
Q Consensus 396 -~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~ 473 (535)
+ .........+..++.....+....+..|..+++.++...+.......+|..+ ++...+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~-g~~~~~~l~~~~g----------- 161 (390)
T TIGR02718 94 VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFG-GGAGTLVLFGKFG----------- 161 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhC-----------
Confidence 1 1222333344445555566666777778777777777777777666777755 8777778887744
Q ss_pred CCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 474 SDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 474 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
|+..|++.+++.++..+..+++.
T Consensus 162 -------------w~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 162 -------------QRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999888877666554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-07 Score=91.59 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHhhhhchhhhhcchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHH
Q 037996 301 LLSIDMLILFVATFGGLGSSLTAIDNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLT 379 (535)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 379 (535)
.||+++|.+...++..+...-......+.+.+ ..|++..+.|.+.+...+...+.+++.|.++||++.||+ .+..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~----Ll~~ 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH----LLWF 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH----HHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH----HHHH
Confidence 46778887766555443332223333444444 579999999999999999999999999999999987642 1222
Q ss_pred HHHHHHHHH-HHHHh-cc----Ccc-hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHh
Q 037996 380 LVLVLSCIG-LLLIA-FP----FPG-SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVK 452 (535)
Q Consensus 380 ~~~~~~~i~-~~~~~-~~----~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~ 452 (535)
+..++...+ ++... .+ +.+ ..++..+.+++......++.-+++.+.. ++.+--+|=.-+.+.+|-.+ +..
T Consensus 80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai-~s~ 156 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAI-ASL 156 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHH-HHH
Confidence 222222212 22211 11 211 1222333445555555666666555543 56677788888888888877 889
Q ss_pred HhHhhhhh
Q 037996 453 VTGSLYDH 460 (535)
Q Consensus 453 i~g~l~~~ 460 (535)
++|.+.+.
T Consensus 157 ~~G~L~~i 164 (412)
T PF01306_consen 157 LAGILFNI 164 (412)
T ss_dssp HHHHHHHH
T ss_pred Hhheeeee
Confidence 99999876
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=87.00 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=101.0
Q ss_pred chhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc----cCcchHHHHHHHHHhhhcchhh
Q 037996 341 IKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF----PFPGSVYVASVIIGFSFGAQLP 416 (535)
Q Consensus 341 a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~l~g~~~g~~~~ 416 (535)
.+..++++.+++++|++..|+++||+||| ..+.+..++..++.++... .....+++..++.|+..|....
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK------~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~ 135 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRK------NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTG 135 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcch------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHH
Confidence 45678899999999999999999999765 3444444444444433332 2456788899999999999999
Q ss_pred HHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHh-HhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHH
Q 037996 417 LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVT-GSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILA 495 (535)
Q Consensus 417 ~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 495 (535)
..+.++.|..|.+.||....+..+...+|..+ +..++ ..+... ...|.+.+.+..
T Consensus 136 ~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll-~~~~~l~~ilGt-----------------------~~~W~~l~~~~~ 191 (485)
T KOG0569|consen 136 LVPMYLTEISPKNLRGALGTLLQIGVVIGILL-GQVLGLPSLLGT-----------------------EDLWPYLLAFPL 191 (485)
T ss_pred HHHHHHhhcChhhhccHHHHHHHHHHHHHHHH-HHHHccHHhcCC-----------------------CcchHHHHHHHH
Confidence 99999999999999999988888888888865 63332 233333 224888877777
Q ss_pred HHHHHHHHHHHHH
Q 037996 496 CVTCFGALVSFIL 508 (535)
Q Consensus 496 ~~~~~~~~l~~~l 508 (535)
+..++..++..++
T Consensus 192 i~~~~~l~~l~~~ 204 (485)
T KOG0569|consen 192 IPALLQLALLPFL 204 (485)
T ss_pred HHHHHHHHHHhcC
Confidence 7666666555443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-06 Score=82.69 Aligned_cols=112 Identities=19% Similarity=0.272 Sum_probs=86.6
Q ss_pred CCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc---C-c----chHHHHHHHH
Q 037996 336 YPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP---F-P----GSVYVASVII 407 (535)
Q Consensus 336 ~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~---~-~----~~~~~~~~l~ 407 (535)
+++...+.......+++++|+++.|++.||+|||+ ++...++++.++.++...+ + + .++....+++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~------vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~L 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK------VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLL 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh------hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHh
Confidence 55566777888889999999999999999997765 4445555556665554433 1 2 3566778899
Q ss_pred HhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHh
Q 037996 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVT 454 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~ 454 (535)
|+|.|+=+|+..++.+|..-.+.||+-.+.+....+.|... |.++.
T Consensus 155 GiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila-G~ivt 200 (538)
T KOG0252|consen 155 GIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA-GGIVA 200 (538)
T ss_pred hccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh-ccHHH
Confidence 99999999999999999999999999999988887777744 54443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-05 Score=77.47 Aligned_cols=110 Identities=21% Similarity=0.194 Sum_probs=68.8
Q ss_pred cchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh----ccCcchHHHHHHHHHhhhcchh
Q 037996 340 TIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA----FPFPGSVYVASVIIGFSFGAQL 415 (535)
Q Consensus 340 ~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~l~g~~~g~~~ 415 (535)
+..+....+.++-+++|--.-.+ |+ ++.+.+.+...+-.+.+++-. .++.+.+.+..+..|+..|..+
T Consensus 282 ~Y~~Y~~~YQ~GVFISRSS~~~~--ri------r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~Y 353 (402)
T PF02487_consen 282 QYRWYQLLYQLGVFISRSSLPFF--RI------RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASY 353 (402)
T ss_pred HHHHHHHHHHHHHhhhhcceeee--eh------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHH
Confidence 34455666666666665543222 22 344554433333222222211 2344555566777799889888
Q ss_pred hHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 416 PLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 416 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
......+.|..++++|.-+.|.......+|..+ +..+ +...+
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~l-Agll-~l~le 395 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILL-AGLL-GLPLE 395 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHH-HHHH-HHHHH
Confidence 888888999999999999999999999988866 5433 44433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=89.58 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=104.1
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHH-HhccC--c----
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLL-IAFPF--P---- 397 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~~~--~---- 397 (535)
+.+.++.+..|+++..++.+..+.-+...+..++.|+++||...|.+..|+ .+..+.+..++...+ +..++ .
T Consensus 31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp-~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRP-YLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcch-hHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 345556667899999999999999999999999999999997765543334 444455555444433 33332 1
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhh-ccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCc
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELF-GLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 476 (535)
...++..++++.++........++.+|.. .+++|.+..+.-.....+|+.+ ++.+...+....+...
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i-~~~~~~pl~~~~~~~~----------- 177 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI-VSVIALPLVDILGKGD----------- 177 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc-----------
Confidence 22333444556555555556668888877 4577888878777777777755 5554444433321000
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 477 KELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 477 ~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
...+|+..+.+.+++.++..+++++..
T Consensus 178 ------~~~g~~~~~~i~~ii~~v~~~~~~~~~ 204 (444)
T PRK09669 178 ------EQKGYFYAMMVMGLLGVVLFFCCFFMT 204 (444)
T ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 012377777777777666655554443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.1e-06 Score=83.47 Aligned_cols=119 Identities=21% Similarity=0.278 Sum_probs=86.7
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~ 401 (535)
+..+.+.+.++.|+|..+.+.+.++..+..+++.+++|+++||..+++ ..+.+..++.++..+.... .+.+.+.
T Consensus 21 ~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~-----~~l~~~~l~~~~~~~~~~~~~~f~~~~ 95 (400)
T PF03825_consen 21 FLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAK-----RILALLSLLSALALLLLAFSSSFWWLF 95 (400)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH-----HHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 344566677899999999999999999999999999999999986432 2333444444444333333 3556666
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHH
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYI 448 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i 448 (535)
+..++..++.....++..++..+..+ +++.-+|-.-+.+.+|=.+
T Consensus 96 ~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~ 140 (400)
T PF03825_consen 96 VIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIV 140 (400)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHH
Confidence 77777788888888888888888774 5667777777777776644
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-06 Score=85.28 Aligned_cols=177 Identities=20% Similarity=0.113 Sum_probs=111.4
Q ss_pred HHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHH-
Q 037996 307 LILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLS- 385 (535)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~- 385 (535)
......++.....++......+.+.+++|++..+.+.+.++..+.-.+ .+++|.++||++.. +..|++.+.++.++.
T Consensus 29 ~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~-G~rRr~~l~~~~~l~~ 106 (468)
T TIGR00788 29 AIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLF-GYTKRWYLVLSGLLGS 106 (468)
T ss_pred HHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCC-CccchHHHHHHHHHHH
Confidence 333333443333333333445555556899999998999998888877 55599999999522 223556666665555
Q ss_pred HHHHHHHhcc-Ccc-hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHH---hhhhhhHHHHHhHhHhHhhhhh
Q 037996 386 CIGLLLIAFP-FPG-SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCG---QLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 386 ~i~~~~~~~~-~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~---~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
.+....+... +.. ...+..++.+++.+..-....++..|..+ ++++...+.. .....+|..+ ++.+.|.+.+.
T Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~v-g~~l~G~l~~~ 184 (468)
T TIGR00788 107 AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLI-SSLLGGPLLDK 184 (468)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 2333333322 222 23335667788888888888899999988 5444433333 3334477755 99999988877
Q ss_pred hhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 461 QAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
.+ |+..|++.+++.++..+.. ++.+|.
T Consensus 185 ~~------------------------~~~~f~~~a~l~ll~~~~~-~~~~E~ 211 (468)
T TIGR00788 185 TL------------------------TRILFLITAALLLLQLFVS-NLSKER 211 (468)
T ss_pred cC------------------------cchHHHHHHHHHHHHHHHH-Hhcccc
Confidence 43 8889988888777764333 333443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6e-06 Score=78.57 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=120.6
Q ss_pred hcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 037996 324 IDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVA 403 (535)
Q Consensus 324 ~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 403 (535)
-..++.+.++.|.+.+++++++++.-++-.+.+++..++..|++.++ .+..+.++.+++..+=...+...++..
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er------~l~~~Llli~~G~~iR~~~~~~~L~~g 105 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEER------SLFLALLLIAAGILIRSLGGLPLLFLG 105 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH------HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34567777888999999999999999999999999999999997542 344566666666554334456678888
Q ss_pred HHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccc
Q 037996 404 SVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIG 483 (535)
Q Consensus 404 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (535)
..+.|.+.+....+.|..+-+.|| |+.+..+|++.+...+++.+ ++.+.-.+.++
T Consensus 106 t~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaL-aa~lavpla~~----------------------- 160 (395)
T COG2807 106 TLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAAL-AAALAVPLAQH----------------------- 160 (395)
T ss_pred HHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHH-HhhhhhHHHHh-----------------------
Confidence 999999999999999999999997 88999999999999988866 87777777766
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 037996 484 VKCYRLPFIILACVTCFGAL 503 (535)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~~~ 503 (535)
.++|+....+.+..++++.+
T Consensus 161 ~~gW~~aL~~WAl~allAl~ 180 (395)
T COG2807 161 SGGWRGALGFWALLALLALL 180 (395)
T ss_pred hccHHHHHHHHHHHHHHHHH
Confidence 33599999999888887654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.6e-06 Score=79.47 Aligned_cols=165 Identities=17% Similarity=0.072 Sum_probs=124.0
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-c---CcchH
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-P---FPGSV 400 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~---~~~~~ 400 (535)
..+|.+.+.++.+..+++++...+..+..++++..|++.+|++.| .-+..+..+++++..++.. + +...+
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk------~gi~lgL~l~avg~~lF~pAa~~~~y~~F 107 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK------AGIVLGLLLYAVGAALFWPAASSKSYGFF 107 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH------HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 467788788899999999999999999999999999999999765 4466788888888776542 2 34556
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
.+..++.|.|.+..-+..+.++..+.+++....-.++...++.+|.++ +|++++++..+... ..-++.++
T Consensus 108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~-gp~~g~~lils~~~---------~~~~~~~~ 177 (422)
T COG0738 108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAIL-GPLLGSSLILSGVA---------LTMSAAQI 177 (422)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhhhh---------hccCHHHH
Confidence 677788899999888888899999999888899999999999999977 99999998885210 00000100
Q ss_pred ----ccccccchHHHHHHHHHHHHHHHHH
Q 037996 481 ----CIGVKCYRLPFIILACVTCFGALVS 505 (535)
Q Consensus 481 ----~~~~~~~~~~f~~~~~~~~~~~~l~ 505 (535)
-.-...++..|..++...++..+..
T Consensus 178 ~~~~~~~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 178 LAIKGADASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 0112347778877777666544433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.6e-06 Score=75.73 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=88.1
Q ss_pred hhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-----
Q 037996 321 LTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP----- 395 (535)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~----- 395 (535)
+.+..+-+.+.++.|+|.++...+.....++..+| ++.|.+.|+++ .+..+.++.+...++...+...
T Consensus 19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~g------p~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFG------PWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 34556778888888999999999988889988875 88899999995 4456677777777776654321
Q ss_pred C---cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhh
Q 037996 396 F---PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLY 458 (535)
Q Consensus 396 ~---~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~ 458 (535)
. .+.+.+...+.|.+.............+.|| ++||++.|+.-...++++.++. .+...+.
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t-~i~~~~f 155 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFT-QIYSAFF 155 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHH-HHHHHHc
Confidence 1 1233333334444433333333445567897 7999999999999999998855 3443333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-06 Score=86.60 Aligned_cols=130 Identities=10% Similarity=0.193 Sum_probs=87.0
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cC--cc----
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PF--PG---- 398 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~--~~---- 398 (535)
...++.+..|+++..++.+..+.-+...+..++.|+++||...|.+.. +..+..+.+..++++.++.. ++ ..
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grr-rp~il~g~i~~~i~~~llf~~p~~~~~~~~~ 107 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKF-KPWILIGTLANSVVLFLLFSAHLFEGTAQYV 107 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCc-chhHhhhhHHHHHHHHHHHcCCCCCccHHHH
Confidence 445555566999999999999999999999999999999764433322 34455566666666444432 21 11
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhh-ccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELF-GLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
++.+..+++++++........++..|+. .+++|.+..+.......+++++ .+.+...+
T Consensus 108 ~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~-~~~~~~~~ 166 (473)
T PRK10429 108 FVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV-TAGFTLPF 166 (473)
T ss_pred HHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 2333344556666666667778888987 4789999888877777777655 44443333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.3e-06 Score=83.73 Aligned_cols=132 Identities=9% Similarity=0.045 Sum_probs=92.5
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHh-ccC--c----c
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIA-FPF--P----G 398 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~--~----~ 398 (535)
...++.+..|+++..++.+..+.-+...+.-++.|.++||...|.+..|.++ ..+.+..+++..++. .+. . .
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i-l~g~i~~~i~~~llf~~p~~s~~~~~~ 110 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV-LFGALPFGIVCVLAYSTPDLSMNGKMI 110 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH-hHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 4445556679999999999999999999999999999999876655444444 455555555544433 331 1 1
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhc-cCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFG-LKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
++.+..+++..++.....+..++.+|+.+ +++|.+..+.-..+..+|..+ ++.+...+.+
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~-~~~~~~plv~ 171 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML-STVLMMPLVN 171 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 23344555667776666677788888876 689999999988888888755 6565544443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=90.03 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=116.7
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-C----c--
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-F----P-- 397 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~----~-- 397 (535)
+..+++.+..|+++...+.+..+..+.+.+..++.|.++||...|.+. |+..+..+.++.+++..++..+ . .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Gr-rrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGR-RRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccc-cceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 445566666799999999999999999999999999999954433332 3344556777777766655432 1 1
Q ss_pred --chHHHHHHHHHhhhcchhhHHHHHHHHhhc-cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCC
Q 037996 398 --GSVYVASVIIGFSFGAQLPLIFAIISELFG-LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRS 474 (535)
Q Consensus 398 --~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~ 474 (535)
..+.+..+++.+++........++..|..+ +++|....+.-.....+|.++ ...+.+.+.+..+....
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l-~~~~~~~l~~~~g~~~~-------- 172 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL-ASFLAPILVSWFGGGDT-------- 172 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH-HHHHhhhhhhhhccCcc--------
Confidence 123445556677777777777788889887 468999999988888888865 55666666654332110
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 475 DVKELICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 475 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
..+|+....+.+++.+++.++..+..+|
T Consensus 173 ---------~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 173 ---------SNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred ---------chHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 1148888888888887777766666666
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9e-06 Score=73.64 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=67.5
Q ss_pred HHcCCChhhhHHHHHhhhhcc-ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhc
Q 037996 19 ASLGYDQSTLNLLGFFKDLGA-NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGAN 97 (535)
Q Consensus 19 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gi 97 (535)
+.++....|++.+..+.+-.. +++.+.|.++||-|||+....-++... +.++ +-. ++.+-.+++.|++.|+
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYi----LsCi--TKh--SpqYkVLmVGR~LGGi 136 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYI----LSCI--TKH--SPQYKVLMVGRVLGGI 136 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHH----HHHH--hhc--CCceEEEeehhhhhhH
Confidence 456777888888655555544 469999999999999998655444443 4332 222 2568889999999999
Q ss_pred ChhhHhhhhhhhHhhhcCCCCcchhhhh
Q 037996 98 SQNFANTGALVTCVKNFPESRGNMIGLL 125 (535)
Q Consensus 98 g~g~~~~~~~~~~~~~fp~~rg~~~g~~ 125 (535)
..+..+.+--+.......+||+.-.-+.
T Consensus 137 aTsLLFSaFEsWliaEHnekr~FeqqWl 164 (454)
T KOG4332|consen 137 ATSLLFSAFESWLIAEHNEKRGFEQQWL 164 (454)
T ss_pred HHHHHHHHHHHHHHHHhhhccCChHhhh
Confidence 9998877655544333345677655443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=77.93 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=115.5
Q ss_pred cchHHHHhh--cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHH-hc---cC--
Q 037996 325 DNLGQIGES--LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLI-AF---PF-- 396 (535)
Q Consensus 325 ~~~~~~~~~--~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~-~~---~~-- 396 (535)
...||. ++ .+-+.+.-|+..+...++.++++++.|+-+.|.+.- ++.+.++.+++.++.++. .. ++
T Consensus 56 s~wpYl-~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~-----k~Pli~s~ii~~~g~llY~~l~~~~~~~ 129 (488)
T KOG2325|consen 56 SMWPYL-QKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSV-----KKPLIVSFLIAIIGNLLYLALAYVPNGV 129 (488)
T ss_pred ecchhh-hhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCc-----ccCHHHHHHHHHHHHHHHHHHHhcccch
Confidence 345555 54 667777889999999999999999999999987531 233567777777776655 22 23
Q ss_pred cchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCc
Q 037996 397 PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDV 476 (535)
Q Consensus 397 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 476 (535)
.+.+.++.++.|+|.+.. +..=.++++..-.++|.++++..+....+|..+ ||.+...+.......
T Consensus 130 ~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il-Gp~~q~~f~~Lg~~G------------ 195 (488)
T KOG2325|consen 130 KYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIIL-GPTIQLAFTPLGEKG------------ 195 (488)
T ss_pred HHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHH-hHHHHHHHhhhcCCc------------
Confidence 345667888999987764 455678888777789999888888766666644 776544443321100
Q ss_pred ccccc--cccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 477 KELIC--IGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 477 ~~~~~--~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
-.+- ...+-|+.+-+++++++++.+++..+..+|.++
T Consensus 196 -~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 196 -FMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred -eEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 0000 113458888899999999988877777666554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=80.66 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=71.6
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc---Cc----c
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP---FP----G 398 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~---~~----~ 398 (535)
...|+.+..|+++.+++.+..+..+...+..++.|+++||.++|++..|.+++..+......+.+++..+ +. .
T Consensus 31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (448)
T PRK09848 31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV 110 (448)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence 3445555669999999999999999999999999999999977655444343333332333333333222 11 1
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhc-cCcccchhhHHhhh
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFG-LKYYSTLFNCGQLA 441 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~ 441 (535)
...+..++.+++++...+...++..+... +++|.+..+.-...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~ 154 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIA 154 (448)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHH
Confidence 12334455676676666566666666554 35677665554433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-05 Score=76.14 Aligned_cols=116 Identities=9% Similarity=-0.052 Sum_probs=85.0
Q ss_pred cCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcCh
Q 037996 21 LGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQ 99 (535)
Q Consensus 21 ~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~ 99 (535)
+|++.++.+...+.+..+.. ..++.+++.||+|+|+++.++.++..++.++... .+ +... ...-++.|++.
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-----~~--~~~~-~~~~~l~g~~~ 244 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-----TH--GYVA-MWFVLALGLFN 244 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----cC--CHHH-HHHHHHHHHHH
Confidence 68999999997666666664 4899999999999999998888777776543321 11 1111 22344788999
Q ss_pred hhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhc
Q 037996 100 NFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYG 145 (535)
Q Consensus 100 g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~ 145 (535)
+..+|.......+.+|++.+++.++...+ .+|+++.+++.+.+.+
T Consensus 245 s~i~P~~~s~a~~~~~~~~~~asai~~~~-~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 245 SIMFPTIFSLALNALGRHTSQGSGILCLA-IVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHH-HhcchHHHHHHHHHHH
Confidence 99999999999999988777788876544 4888887766665554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.1e-05 Score=77.65 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=111.0
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccC------cc
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPF------PG 398 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~------~~ 398 (535)
+.+-++....|+++..++.++.+.-+..++.-++.|.++||...|.+..|.+++.....+..++.+.+..++ ..
T Consensus 34 yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ 113 (467)
T COG2211 34 YLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLI 113 (467)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchH
Confidence 334444456699999999999999999999999999999998877776565555444444444444444332 23
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhc-cCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcc
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFG-LKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVK 477 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 477 (535)
..++...+.++++.....+..++.+++.. +++|.+..+.-..+..+|.++ ...+.+.+....+..+.
T Consensus 114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l-~~~~~~plv~~~g~~~~----------- 181 (467)
T COG2211 114 YALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL-VAVLFPPLVKLFGGGDK----------- 181 (467)
T ss_pred HHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcc-----------
Confidence 45556678888887776666677777764 578888888888888888766 45666666655432110
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 478 ELICIGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 478 ~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
..+|+.+..+++++.++..+++++-
T Consensus 182 ------~~g~~~~~~~~~vi~~i~~l~~~~~ 206 (467)
T COG2211 182 ------ALGYQGTALVLGVIGVILLLFCFFN 206 (467)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1237766666666666555555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0012 Score=67.16 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=61.2
Q ss_pred hhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHH-HHHHHHHHHHHHHHhc----------cCcchHHHHHHHHHhh
Q 037996 342 KSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLML-TLVLVLSCIGLLLIAF----------PFPGSVYVASVIIGFS 410 (535)
Q Consensus 342 ~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~-~~~~~~~~i~~~~~~~----------~~~~~~~~~~~l~g~~ 410 (535)
-..+.+++++..+||.+..+.. +-.+| .|.... .+.=++....+++... .+.+..++..+++|+.
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~---~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDED---SRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCC---ccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 4557788999999999775431 11111 221111 1111222222222211 2334566778888998
Q ss_pred hcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhH
Q 037996 411 FGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNV 451 (535)
Q Consensus 411 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p 451 (535)
.|...+....+..+..+++++..+-.+....-.+|-.+ |.
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~-Gs 425 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLAL-GA 425 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 88777777777788887777777777776666666644 53
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00017 Score=69.36 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=110.4
Q ss_pred HHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH
Q 037996 298 LQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM 377 (535)
Q Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 377 (535)
.+.++++-+..+.+....-+..+- +.-.+.+++|++..+.+.+.......+.+...+.|.++||+||| ..
T Consensus 32 f~~Fqr~yl~vY~La~~aDWLQGp----Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk------~~ 101 (354)
T PF05631_consen 32 FRRFQRKYLLVYLLAMAADWLQGP----YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK------KA 101 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch------HH
Confidence 334444444444444443333321 12234467899999999998888888899999999999999765 34
Q ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHhhhcchhhHHHH-HHHHh----hccCcccchhhHHh-hhhhhHHHHHhH
Q 037996 378 LTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIFA-IISEL----FGLKYYSTLFNCGQ-LASPLGSYILNV 451 (535)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~-~~~~~----~~~~~~g~~~g~~~-~~~~ig~~i~~p 451 (535)
..+..++-.++.+.-..++...+++..++-|++....++..-+ ++.|. +|++..+..++... ..+.+-.++ +.
T Consensus 102 cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~-aG 180 (354)
T PF05631_consen 102 CLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIG-AG 180 (354)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHH-Hh
Confidence 4445555555555555667788999999999999888877655 44444 33344444444444 223333322 33
Q ss_pred hHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 452 KVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 452 ~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
.++..+.+..+ . +-..+|.....+.+++.++....+.|.
T Consensus 181 v~a~~l~~~~~---------------------~-g~vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 181 VVANVLADWFG---------------------F-GPVAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHHHHhC---------------------C-CCcchHHHHHHHHHHHHHHHHhccccc
Confidence 44444444422 1 135678887777777766555455554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.3e-05 Score=70.86 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=101.0
Q ss_pred cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHhhhc
Q 037996 334 LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVYVASVIIGFSFG 412 (535)
Q Consensus 334 ~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~g~~~g 412 (535)
-|.+..+.+++......+..+|+..+|.++|++|||+.. ....+..++..++-.. ++...+++...+.|+|.|
T Consensus 108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f------~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g 181 (528)
T KOG0253|consen 108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGF------NLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG 181 (528)
T ss_pred hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhh------hhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence 377778889999999999999999999999999877533 3333333443333333 467788889999999999
Q ss_pred chhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHH
Q 037996 413 AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFI 492 (535)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 492 (535)
+ .|...++-.|..|..++..-.=.. ....+|... ...+.=....+. +|++-..
T Consensus 182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~-ea~law~vm~~~------------------------gwr~~l~ 234 (528)
T KOG0253|consen 182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVF-EALLAWGVMSNF------------------------GWRYLLF 234 (528)
T ss_pred C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHH-HHHHHHHHHHhh------------------------hHHHHHH
Confidence 8 788888888999888888755555 666777744 544433333332 3888777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037996 493 ILACVTCFGALVSFILV 509 (535)
Q Consensus 493 ~~~~~~~~~~~l~~~l~ 509 (535)
.......+.+.+++|+.
T Consensus 235 ~~~~pl~~~a~f~~w~~ 251 (528)
T KOG0253|consen 235 TSSTPLMFAARFLVWVY 251 (528)
T ss_pred HHHhHHHHHHHHHhhcc
Confidence 77666666666666654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=76.38 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=90.0
Q ss_pred HHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037996 18 KASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGA 96 (535)
Q Consensus 18 ~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~G 96 (535)
..++|++.+++..+.....+..+ ++++.|++.||+|.|+++.++.++..+..+.. +... .-..++++..+.|
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~---~~~~----~~~~f~i~gll~g 352 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL---IFLE----GELDFWILGLLVG 352 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH---HHcc----ccHHHHHHHHHHH
Confidence 35899999999997666666665 59999999999999999999999877764432 1111 1244667778899
Q ss_pred cChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHh
Q 037996 97 NSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVY 144 (535)
Q Consensus 97 ig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~ 144 (535)
...|.....+-++..+..|+ |.++..|++....-.++ ++++..-.++
T Consensus 353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S-~~gp~lv~v~ 400 (438)
T COG2270 353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAAS-FLGPFLVAVI 400 (438)
T ss_pred HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHH-HHHHHHHHHH
Confidence 99999999999999999975 78999999877644444 4444444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.03 E-value=6e-05 Score=73.58 Aligned_cols=130 Identities=18% Similarity=0.118 Sum_probs=95.7
Q ss_pred HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-----cC--------c
Q 037996 331 GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-----PF--------P 397 (535)
Q Consensus 331 ~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-----~~--------~ 397 (535)
..+++++....+.+.++..+... .|+.+|..||+.....+++|...+..+.++...+..+..+ .. .
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 35678877777888887777766 6999999999976344455666666666666655443321 11 1
Q ss_pred c----hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 398 G----SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 398 ~----~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
+ ...+...++|++.+...+...+++.|..++|+|+++.++.....-+|..+ +..+.|.+.+.++
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv-~ai~~g~lL~~~s 153 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIV-SAIVFGRLLDPFS 153 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHccccC
Confidence 1 22334556788888888888899999999999999999999988888866 8899998888754
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.9e-08 Score=98.77 Aligned_cols=139 Identities=23% Similarity=0.198 Sum_probs=102.7
Q ss_pred ccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc----CcchHHHHHHHHHhhhcch
Q 037996 339 KTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP----FPGSVYVASVIIGFSFGAQ 414 (535)
Q Consensus 339 ~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~l~g~~~g~~ 414 (535)
...++..+...++..+|.++.|+++||+||| ..+..+.++..++.++.... +.+.+.+..++.|++.|..
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRK------PALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456778899999999999999999999766 34556666666666665543 4677888899999999999
Q ss_pred hhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHH
Q 037996 415 LPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIIL 494 (535)
Q Consensus 415 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 494 (535)
.+..+.++.|..|+++|+....+......+|.++ +..+ ++....... ...|+..+.+.
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~-~~~~-~~~~~~~~~--------------------~~~Wr~~~~~~ 177 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILL-ASLI-GYIVSYYSD--------------------NWGWRILLIFG 177 (451)
T ss_pred cccccccccccccccccccccccccccccccccc-cccc-ccccccccc--------------------ccccccccccc
Confidence 9999999999999999999999999888888755 5433 333322110 12388888777
Q ss_pred HHHHHHHHHHH
Q 037996 495 ACVTCFGALVS 505 (535)
Q Consensus 495 ~~~~~~~~~l~ 505 (535)
.+..++..+..
T Consensus 178 ~~~~l~~~~~~ 188 (451)
T PF00083_consen 178 AIPSLLVLLLR 188 (451)
T ss_pred ccccccccccc
Confidence 66665544333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.6e-05 Score=78.25 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=90.0
Q ss_pred cHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccch--HHHHHHHHHHHHHHHHHHHHH-hcCCCChhHHHHH
Q 037996 14 SKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTW--FVLLVGSGMNFAGYLMIWLAV-TGKIAKPAVWHMC 89 (535)
Q Consensus 14 ~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r--~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~l~ 89 (535)
...-.+++|++.+|+..+.....+..+ .++++|++.||+|.| ++++++.++..+-.+.-.+.+ .....-.+-+.++
T Consensus 305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 344567899999998886555555554 599999999999999 888777777643322211100 0010013468899
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHH
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLA 142 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~ 142 (535)
+..++.|+..|...+...++.++..|+ +.+...|++....-.++.+ +|+..+
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~l-GPll~g 437 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWL-GPLLFG 437 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999985 7899999987665444444 444333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4e-05 Score=76.58 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=104.8
Q ss_pred HhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHh
Q 037996 331 GESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-PFPGSVYVASVIIGF 409 (535)
Q Consensus 331 ~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~g~ 409 (535)
+++.+-.+..-+....+--.+-+..-++.+++.+|+||-+ ++..++....+=++.+.. .|+|.....-++-|+
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~------v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgi 471 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN------VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGI 471 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc------eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHH
Confidence 3555543444443334444555666677888888887543 333444444443344443 377888888899999
Q ss_pred hhcchhhHHHHHHHHhhccCcccchhhHHhhhh-hhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccch
Q 037996 410 SFGAQLPLIFAIISELFGLKYYSTLFNCGQLAS-PLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYR 488 (535)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (535)
..+..+..+.++++...||+.+.++.++..... ++|--+ |.+|+|.+.+..+ -+
T Consensus 472 t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~-GslIGG~~v~~fg------------------------~~ 526 (618)
T KOG3762|consen 472 THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGL-GSLIGGFVVERFG------------------------AR 526 (618)
T ss_pred HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcch-hhhhhhhhheeeh------------------------hH
Confidence 999999999999999999999999999986544 666644 8888888888755 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 489 LPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 489 ~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
..|.++++.+++.+++.+.+.+..++
T Consensus 527 ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 527 TTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 67878877777766665555544443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00019 Score=76.40 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=112.8
Q ss_pred hHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccC------c---
Q 037996 327 LGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPF------P--- 397 (535)
Q Consensus 327 ~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~------~--- 397 (535)
..|+....|+++.++..+...+.....+..+++|+++|++- +|...+..+.++..++..++.... .
T Consensus 11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~l-----G~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWL-----GKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 44555567888888888888888778888999999999763 344556666677777766654431 1
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhhccC---cccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCC
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELFGLK---YYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRS 474 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~ 474 (535)
...++.+.+..+|.|+.-+...+...|.+.++ .+-..+.+.+...++|+++ ++.+.+++.+...
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSli-s~~i~~~l~~~~~------------ 152 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLI-STIITPILRGDVG------------ 152 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc------------
Confidence 12456677778889998899999999998754 3667788888889999976 8888887765421
Q ss_pred Ccccccccc-cccchHHHHHHHHHHHHHHHHHHH
Q 037996 475 DVKELICIG-VKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 475 ~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
|.+ ..+|..+|.+.+++.+++.++...
T Consensus 153 ------~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 153 ------CFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred ------ccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 111 225889999988888887765543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0035 Score=66.92 Aligned_cols=131 Identities=11% Similarity=-0.022 Sum_probs=93.0
Q ss_pred cccHHHHHHcCCChhhhHH-HHHhhhhccccccchhhhcccc-cchHHHHHHHHHHHHHHHHHHHHHhcCCC---ChhHH
Q 037996 12 TYSKDIKASLGYDQSTLNL-LGFFKDLGANVGVPSGLLGEIT-PTWFVLLVGSGMNFAGYLMIWLAVTGKIA---KPAVW 86 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~~~ 86 (535)
.+..++.+.+|+++++... ...+..+..+..+++|.++|++ |+++++.++.++..+|..++++. +... .....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~--a~~~~~~~~~~~ 86 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG--AIPSSGHPLHDL 86 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc--cCcccccchHHH
Confidence 3455677889999888877 5666667777899999999997 99999999999999998776542 2211 01123
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CC---CcchhhhhHHhhhhhHHHHHHHHHHHh
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ES---RGNMIGLLKGFTGLSGAILTQVYLAVY 144 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~---rg~~~g~~~~~~~lg~~i~~~~~~~~~ 144 (535)
.+++.-.+..+|.|.+-+...+...+-|+ ++ |-....+...+..+|+.+...+...+-
T Consensus 87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788999988888888899894 33 344455555555677766655555443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.016 Score=59.10 Aligned_cols=123 Identities=7% Similarity=0.004 Sum_probs=73.8
Q ss_pred HHHHHHcCCC-----hhhhHHHHHhhhhccc-c-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCC--h--
Q 037996 15 KDIKASLGYD-----QSTLNLLGFFKDLGAN-V-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAK--P-- 83 (535)
Q Consensus 15 ~~l~~~~~~s-----~~~~~~~~~~~~~~~~-~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~--~-- 83 (535)
-+++|.+.++ ...+.|+-+...+.+. . .++.+++++|++|++.+-+-...+..-.+++++.+-...+. +
T Consensus 27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~ 106 (472)
T TIGR00769 27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA 106 (472)
T ss_pred HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence 4567777663 3578887666666553 3 78999999999999998887777777766665543221110 0
Q ss_pred --------------------hHHHHHHHHHHhhcChhhHhh-hhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHH
Q 037996 84 --------------------AVWHMCAYICIGANSQNFANT-GALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILT 137 (535)
Q Consensus 84 --------------------~~~~l~~~r~l~Gig~g~~~~-~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~ 137 (535)
+.|...++.+..-+-...+.. .-...++|.+. ++-.|-.+++..+.++|..+.+
T Consensus 107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg 182 (472)
T TIGR00769 107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSG 182 (472)
T ss_pred HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222333333333333332 44566777774 5666677777666666665544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.7e-06 Score=86.78 Aligned_cols=180 Identities=16% Similarity=0.143 Sum_probs=2.5
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccC-----c--
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPF-----P-- 397 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~-----~-- 397 (535)
..++.+-+.++++.++++++.+.+.+++.+..++..++.+|- +|...+..+.++++++.+++..|+ +
T Consensus 24 ~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~ 97 (539)
T PF03137_consen 24 SSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSY 97 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCcceeeecHHHHHHHHHHHhccHhhcCCCcc
Confidence 456667667899999999999999999998888888887763 333456677888888766654320 0
Q ss_pred --------------------------------------------chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccc
Q 037996 398 --------------------------------------------GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYST 433 (535)
Q Consensus 398 --------------------------------------------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~ 433 (535)
..++++-++.|+|....+++..+++-|..++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~spl 177 (539)
T PF03137_consen 98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPL 177 (539)
T ss_dssp ------------------------------------------------------SSS-----------------------
T ss_pred ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCcc
Confidence 023344567788888888999999999999999999
Q ss_pred hhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhh-cCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 434 LFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKK-GMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 434 ~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
..|+......+|..+ |=.+++.....+.+....+. +.. -.++++ .+.+.|...|.+.+++.++..+..+.+.++.
T Consensus 178 YiGi~~~~~~lGPa~-Gf~lg~~~L~~yvD~~~~~~~~~~-i~p~dp--~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 178 YIGILYAMSILGPAL-GFLLGSFCLRIYVDFPKVPPDGVG-ITPSDP--RWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhHHhhccHHH-HHHHHHHHHhceeCCccccccCCC-CCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 999999988888865 75555544443221110000 000 001111 2245699999999888887777666665443
Q ss_pred hH
Q 037996 513 RE 514 (535)
Q Consensus 513 ~~ 514 (535)
.+
T Consensus 254 p~ 255 (539)
T PF03137_consen 254 PG 255 (539)
T ss_dssp --
T ss_pred CC
Confidence 33
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00027 Score=72.06 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=110.4
Q ss_pred chHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-c----CcchH
Q 037996 326 NLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-P----FPGSV 400 (535)
Q Consensus 326 ~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~----~~~~~ 400 (535)
..+++.+++|.++.+...+.++..+.-. ..++.|.++|-+--+ +.+|++.+.++.++..++.+.+.. + +....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~-G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIF-GYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhccccccc-CCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 3455667789999998888777777554 588999999986321 234666677777666555444332 2 23344
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhcc--CcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGL--KYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKE 478 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~ 478 (535)
.+..++..++....-.+.-+.+.|.... +.+|...+.......+|+++ +..+.|.+.+..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv-~~~l~G~l~~~~~---------------- 152 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLV-GSLLSGPLLDSFG---------------- 152 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCC----------------
Confidence 4555666777777777778888887642 34677788888888899966 8888888888743
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 479 LICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 479 ~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
++..|.+.+.+..+..+..+++.+|
T Consensus 153 --------~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 153 --------PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred --------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 6777877777777776666666665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=65.32 Aligned_cols=121 Identities=9% Similarity=0.045 Sum_probs=86.8
Q ss_pred HHHHcCCChhhhHH-HHHhhhhccccccchhhhcccccchHHHHHHHHHHHHH-HHHHHHHHhcCCCChhHHHHHHHHHH
Q 037996 17 IKASLGYDQSTLNL-LGFFKDLGANVGVPSGLLGEITPTWFVLLVGSGMNFAG-YLMIWLAVTGKIAKPAVWHMCAYICI 94 (535)
Q Consensus 17 l~~~~~~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~r~l 94 (535)
.+++||+|+...+. .++.+.+.....++.|.++||+|++...+.+.++.++. ..++.+ +++.=+..-.+
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F---------t~lsPy~~m~~ 361 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF---------TFLSPYTSMTF 361 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh---------hhccHHHHHHH
Confidence 47889999999998 57777777778999999999999999887766664443 322211 12223355567
Q ss_pred hhcChhhHhhhhhhhHhhhcCC-CCcchhhhhHHhhhhhHHHHHHHHHHHhcC
Q 037996 95 GANSQNFANTGALVTCVKNFPE-SRGNMIGLLKGFTGLSGAILTQVYLAVYGN 146 (535)
Q Consensus 95 ~Gig~g~~~~~~~~~~~~~fp~-~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~ 146 (535)
.|++....-.+-..+++...|+ +.|++.|.+.+.-.+|-.+.+.+.+.+.++
T Consensus 362 lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 362 LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 7888777655456667777785 699999999998888877765555444443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0071 Score=60.96 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=92.4
Q ss_pred HHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchH
Q 037996 297 ILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPL 376 (535)
Q Consensus 297 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~ 376 (535)
+++.++.+-|...+...++... .+.+-.....+..+.|+++...+.+-+...+.+..|.++..++.+|+|..|.
T Consensus 252 w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~----- 325 (432)
T PF06963_consen 252 WRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA----- 325 (432)
T ss_pred HHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-----
Confidence 3455566655544333332222 2223334555667779999999999999999999999999999999974321
Q ss_pred HHHHHHHHHHH----HHHHHhcc-Cc-chHHHHHHHHHh-----hhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhH
Q 037996 377 MLTLVLVLSCI----GLLLIAFP-FP-GSVYVASVIIGF-----SFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLG 445 (535)
Q Consensus 377 ~~~~~~~~~~i----~~~~~~~~-~~-~~~~~~~~l~g~-----~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig 445 (535)
-..+.....+ +...+..+ ++ .......++.|+ |.-..--...-+++|..|+++||+..|.-+...++.
T Consensus 326 -G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf 404 (432)
T PF06963_consen 326 -GLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLF 404 (432)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHH
Confidence 1122211111 11111122 22 122222223232 322233345568889999999999999999999988
Q ss_pred HHHHhHhHhHhhhhh
Q 037996 446 SYILNVKVTGSLYDH 460 (535)
Q Consensus 446 ~~i~~p~i~g~l~~~ 460 (535)
.++ . .+.+.+...
T Consensus 405 ~ll-~-~~~~ii~~~ 417 (432)
T PF06963_consen 405 ELL-S-FVLTIIFPR 417 (432)
T ss_pred HHH-H-HHHHhccCC
Confidence 865 3 566665554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00039 Score=66.88 Aligned_cols=112 Identities=21% Similarity=0.123 Sum_probs=82.7
Q ss_pred cccHHHHHHcCCCh--hhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 12 TYSKDIKASLGYDQ--STLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 12 ~~~~~l~~~~~~s~--~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
...+.+.++++.+. .+.++......+.... .++.|.+.||+|||+.+..+.....++.+..++. .. .+.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~ 97 (338)
T COG0477 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--PN---VGLALL 97 (338)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--cc---chHHHH
Confidence 34556666776665 4677766666666654 6899999999999988888887655553333222 11 247888
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcCC--CCcchhhhhHHh
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFPE--SRGNMIGLLKGF 128 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp~--~rg~~~g~~~~~ 128 (535)
++.|+.+|++.+...+.....+.+++|+ +|+...+.....
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLG 139 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 8999999999999999999999999986 678888876663
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.019 Score=57.62 Aligned_cols=54 Identities=17% Similarity=0.011 Sum_probs=37.9
Q ss_pred HhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhh
Q 037996 408 GFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQA 462 (535)
Q Consensus 408 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~ 462 (535)
.+.....+....+.-+++..|..-|+.+.+.|+..++|+.- -..+.=++.|..+
T Consensus 416 sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtW-P~~~vL~lVD~fT 469 (544)
T PF13000_consen 416 SFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTW-PRTFVLWLVDYFT 469 (544)
T ss_pred HHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCc-hHHHHHHHhhhcc
Confidence 34444455555667777888999999999999999999954 4445556666643
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00021 Score=53.55 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=60.1
Q ss_pred ccccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHH
Q 037996 7 TYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWL 74 (535)
Q Consensus 7 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~ 74 (535)
.|+|....|.|.+|.++|.++.+|+.+...+|++. ++....+.++..+|+.+..+.+...+..+.+++
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999986 888899999988899999999888888666543
|
Note that many members are hypothetical proteins. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00033 Score=73.69 Aligned_cols=180 Identities=17% Similarity=0.157 Sum_probs=123.3
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-------
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP------- 395 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~------- 395 (535)
+...++.+=+.++++.++.+++.+.+-+++.+......+...|. +|...+.++.++++++.++...+
T Consensus 116 ~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~------HrPr~Ig~G~~~m~lgsll~alPHf~~~~y 189 (735)
T KOG3626|consen 116 FNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG------HRPRWIGIGLVLMGLGSLLFALPHFFSGPY 189 (735)
T ss_pred hhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc------CccceeeechhHHHHHHHHHhChHHhcCcc
Confidence 34455555456699999999999999999999888888887775 33344567777777776655431
Q ss_pred ------------Cc---------------------------------c-hHHHHHHHHHhhhcchhhHHHHHHHHhhccC
Q 037996 396 ------------FP---------------------------------G-SVYVASVIIGFSFGAQLPLIFAIISELFGLK 429 (535)
Q Consensus 396 ------------~~---------------------------------~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~ 429 (535)
++ + .++++-++.|+|....+++..+++-|...++
T Consensus 190 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~ 269 (735)
T KOG3626|consen 190 EYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK 269 (735)
T ss_pred hhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccccc
Confidence 00 0 1233456778888888889899999999999
Q ss_pred cccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 430 YYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 430 ~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
+.+...|+.+....+|..+ |=.+++.....+.+....+. .-.++|+. ..|.|+..|++++.+.+++.+..+++.
T Consensus 270 ~SplYlgi~~~~~~lGPai-GfllgS~~l~lYvD~~~~~~---~it~~DPr--WIGAWWlGFLi~g~~~~~~a~p~f~fP 343 (735)
T KOG3626|consen 270 NSPLYLGILYSMAILGPAI-GFLLGSFCLKLYVDFGLSPI---GITPTDPR--WIGAWWLGFLICGALLLFSAVPLFFFP 343 (735)
T ss_pred CCcHHHHHHHHHHHhhhHH-HHHHHHHHHHeeeccccCCC---CCCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999988888865 75555554443332111111 11112222 246699999999999999888777776
Q ss_pred hhhhH
Q 037996 510 IRTRE 514 (535)
Q Consensus 510 ~~~~~ 514 (535)
++..+
T Consensus 344 k~lp~ 348 (735)
T KOG3626|consen 344 KELPK 348 (735)
T ss_pred ccCcc
Confidence 55444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00087 Score=57.25 Aligned_cols=97 Identities=10% Similarity=-0.086 Sum_probs=74.0
Q ss_pred HHHhhhhccccccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcChhhHhhhhhhhH
Q 037996 31 LGFFKDLGANVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGANSQNFANTGALVTC 110 (535)
Q Consensus 31 ~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~ 110 (535)
....+....+..++.+.+.+++|+|+.+++|.+.+.+-.+. ... ++.+.++...++.|+|.+..+++--.++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~------~~~--~~~~~l~~~s~l~G~~~a~lW~aqg~yl 114 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS------FFY--PNSYTLYPASALLGFGAALLWTAQGTYL 114 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHh--hhHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence 34444444455788889999999999999999887755322 222 4567788999999999999999999999
Q ss_pred hhhcC-CCCcchhhhhHHhhhhhHHH
Q 037996 111 VKNFP-ESRGNMIGLLKGFTGLSGAI 135 (535)
Q Consensus 111 ~~~fp-~~rg~~~g~~~~~~~lg~~i 135 (535)
.++.. ++|++-.++..+....+..+
T Consensus 115 t~~s~~~~~~~~~~ifw~i~~~s~i~ 140 (156)
T PF05978_consen 115 TSYSTEETIGRNTGIFWAIFQSSLIF 140 (156)
T ss_pred HHcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 99885 57999999987777655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0067 Score=51.84 Aligned_cols=105 Identities=10% Similarity=-0.051 Sum_probs=81.9
Q ss_pred hhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhhhcchhhHHHHHH
Q 037996 343 SFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIFAII 422 (535)
Q Consensus 343 ~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~ 422 (535)
.-.++......+..++.+.+.++++. |+.++++.+...+.......++.+.++...++.|++.+..+..-..++
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~------K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~yl 114 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGP------KWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYL 114 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence 34566667777888889999999954 477777777777665555566777888999999999999999888899
Q ss_pred HHhhccCcccchhhHHhhhhhhHHHHHhHhHh
Q 037996 423 SELFGLKYYSTLFNCGQLASPLGSYILNVKVT 454 (535)
Q Consensus 423 ~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~ 454 (535)
.+...++.+++..++.-.....+.++ |..+.
T Consensus 115 t~~s~~~~~~~~~~ifw~i~~~s~i~-G~~~~ 145 (156)
T PF05978_consen 115 TSYSTEETIGRNTGIFWAIFQSSLIF-GNLFL 145 (156)
T ss_pred HHcCCHHHHhhHHHHHHHHHHHHHHH-HHHHH
Confidence 99988899999999887777776644 65443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.012 Score=56.78 Aligned_cols=129 Identities=9% Similarity=-0.066 Sum_probs=72.1
Q ss_pred CcccccccccHHHHHHcCCChhhhHHHHHhhhhccccccchhhhcc-----cccchHHHHHHHHHHHHHHHHHHHHHh--
Q 037996 5 GATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGE-----ITPTWFVLLVGSGMNFAGYLMIWLAVT-- 77 (535)
Q Consensus 5 g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~D-----r~G~r~~~~~g~~~~~~g~~~~~~~~~-- 77 (535)
|.++.-....|.+-+.=|.|-++.+..+.++.-. ..-+++.++.| |+||||..++=+ -+.+|..+..++..
T Consensus 44 GiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~-q~llG~~mllLs~~v~ 121 (510)
T KOG3574|consen 44 GIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPC-QYLLGLFMLLLSYLVD 121 (510)
T ss_pred CCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeeh-HHHHHHHHHHHhhCCC
Confidence 4444444467888887788888777765543322 23677888888 999999765432 22234333332211
Q ss_pred ----cCCCChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhc-CCCCcchhhhhHHhhhhhHHH
Q 037996 78 ----GKIAKPAVWHMCAYICIGANSQNFANTGALVTCVKNF-PESRGNMIGLLKGFTGLSGAI 135 (535)
Q Consensus 78 ----~~~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~f-p~~rg~~~g~~~~~~~lg~~i 135 (535)
+.-..++...+...-++.-+.++.-..+.-....... |++-|-+......+...|.++
T Consensus 122 ~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 122 RGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred cccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 0111233444434444555556665554444444444 567888777766665555544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0014 Score=48.65 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=42.8
Q ss_pred hhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhc
Q 037996 322 TAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAK 369 (535)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~ 369 (535)
.+..+.+.+.++.|+++.+.+.+.++..+...++.+++|+++||.+++
T Consensus 18 ~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~ 65 (77)
T PF12832_consen 18 CLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR 65 (77)
T ss_pred HHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 455667777788999999999999999999999999999999999765
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0034 Score=63.97 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=94.5
Q ss_pred HHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHh--hhcchhhHHHHHHHHhh
Q 037996 349 SIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGF--SFGAQLPLIFAIISELF 426 (535)
Q Consensus 349 ~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~--~~g~~~~~~~~~~~~~~ 426 (535)
++..++.+++.|.++||+||| ..+........+..+...+.. ++..+ +.++ +++..++...++++|..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk------~~L~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRK------VVLLLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhh------hhHHHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeecc
Confidence 677888999999999999765 344444444443333333322 22222 4433 34555677788999999
Q ss_pred ccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHH
Q 037996 427 GLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 427 ~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
..+.|...+|+.+.....+..+ +|.+.+.+....+ +...|.+..+..+++.+..+
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~~-~p~~~~~~~~~~~------------------------~a~~f~ia~~~~~~~~~y~~ 196 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLVI-GPALGGYLVKFLG------------------------IALVFLIAAASGILSLLYML 196 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcC------------------------chHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888867 8888888877643 77888888888888888777
Q ss_pred HHHhhhhHHH
Q 037996 507 ILVIRTREFY 516 (535)
Q Consensus 507 ~l~~~~~~~~ 516 (535)
+..+|+....
T Consensus 197 ~~l~Esl~~~ 206 (463)
T KOG2816|consen 197 LFLPESLQEK 206 (463)
T ss_pred hccccccCcc
Confidence 7777765533
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.028 Score=55.72 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=75.1
Q ss_pred cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-Cc---chHH-----HHH
Q 037996 334 LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FP---GSVY-----VAS 404 (535)
Q Consensus 334 ~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~---~~~~-----~~~ 404 (535)
+| +...+-++..++.+..+.-.+.+-|+.||+|-| ....++..+.+++-.+=..+ .+ ..+. ..-
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR------~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq 147 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR------TALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQ 147 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchH------HHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhH
Confidence 36 444455666788888888889999999999643 45566777777765542222 11 2222 233
Q ss_pred HHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhh
Q 037996 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 405 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~ 460 (535)
.+.+...-....+-+-+..--||+++|+++..+..+.+.+|..+ +-.+-..+..+
T Consensus 148 ~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav-g~llppilV~~ 202 (480)
T KOG2563|consen 148 SIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV-GFLLPPILVPS 202 (480)
T ss_pred HHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHH-HhhccceecCC
Confidence 33333333333333345555689999999999999999998866 75554444444
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.15 Score=50.46 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=60.5
Q ss_pred chhhHHH-HHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHH-HHHHHHHHHHh-------ccCcchHHHHHHHHHhhh
Q 037996 341 IKSFVSL-VSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVL-VLSCIGLLLIA-------FPFPGSVYVASVIIGFSF 411 (535)
Q Consensus 341 a~~~~~~-~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~-~~~~i~~~~~~-------~~~~~~~~~~~~l~g~~~ 411 (535)
+-..... +++...+|++.+.++-++=. |.....+.. ++..-.+.++. +.+.+++++...++|+..
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~~------r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsn 357 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWPDP------RKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSN 357 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCCCC------ceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhcc
Confidence 3344555 88999999888887766531 222222221 11111122111 224567788888999987
Q ss_pred cchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 412 GAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 412 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
|-..++.-.+..+..+++++-.+-.+....-..|- ..| .+.+++
T Consensus 358 GYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl-~~G-~~~s~l 401 (406)
T KOG1479|consen 358 GYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGL-ALG-SLLSWV 401 (406)
T ss_pred chHhhheehhcCCCCChHHHHHHHHHHHHHHHHHH-HHh-hHHHHH
Confidence 77666666777777776555554444444443333 324 344444
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.25 Score=52.05 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=68.2
Q ss_pred ccHHHHHHcCCChhhhHH-HHHhhhhccccccchhhhcccc-cchHHHHHHHHHHHHHHHHHHHHHhcC-----------
Q 037996 13 YSKDIKASLGYDQSTLNL-LGFFKDLGANVGVPSGLLGEIT-PTWFVLLVGSGMNFAGYLMIWLAVTGK----------- 79 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~----------- 79 (535)
...++.+++|.+..++.- ++..........++++.++|-| ||=+++.++.++..+|..++.+.....
T Consensus 60 lv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~ 139 (571)
T KOG1237|consen 60 LVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKP 139 (571)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCC
Confidence 445667788877765555 4444333333468899999998 999999999999999855554331111
Q ss_pred ----CCChh---HHHHHHHHHHhhcChhhHhhhhhhhHhhhcC
Q 037996 80 ----IAKPA---VWHMCAYICIGANSQNFANTGALVTCVKNFP 115 (535)
Q Consensus 80 ----~~~~~---~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp 115 (535)
...++ ...++...-+..+|.|..-+.....-++-|+
T Consensus 140 ~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd 182 (571)
T KOG1237|consen 140 GGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFD 182 (571)
T ss_pred CCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccC
Confidence 01112 1244555666778999988887788888886
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0008 Score=49.92 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=41.8
Q ss_pred ccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHH
Q 037996 13 YSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMN 65 (535)
Q Consensus 13 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~ 65 (535)
+.|...++.|+|..|++.+.....+..+ ..+++|.++||+++++..+.+..++
T Consensus 22 fl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 22 FLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4455556789999999997666666665 4899999999999999987766553
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.064 Score=51.19 Aligned_cols=128 Identities=21% Similarity=0.243 Sum_probs=84.7
Q ss_pred chHHHHhhcCCCC--ccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-C--cchH
Q 037996 326 NLGQIGESLGYPT--KTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-F--PGSV 400 (535)
Q Consensus 326 ~~~~~~~~~g~~~--~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~--~~~~ 400 (535)
..+.+..+.+.+. ...++..+...+...++.++.|.+.||.|+| ..+..+......+.+..... + ...+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR------KVLIIGLLLFLLGTLLLALAPNVGLALL 97 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch------HHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3444445554444 3577888888899999999999999999654 22233332223332222222 3 3455
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhcc-CcccchhhHHhh-hhhhHHHHHhHhHhHhhhhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGL-KYYSTLFNCGQL-ASPLGSYILNVKVTGSLYDH 460 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~ig~~i~~p~i~g~l~~~ 460 (535)
.+.....|++.+...+...+++.|.+|+ ++++...+.... ...++..+ +|.+.+.+.+.
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 158 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLAL-GPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5566667888888888889999999987 578888888877 46666655 77666666655
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.098 Score=54.61 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=68.0
Q ss_pred hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHH-HH-HHHHHHHHHHHh--ccC----cchHHHHH
Q 037996 333 SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLT-LV-LVLSCIGLLLIA--FPF----PGSVYVAS 404 (535)
Q Consensus 333 ~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~-~~-~~~~~i~~~~~~--~~~----~~~~~~~~ 404 (535)
-+|.+....+.+.+++-.+..+|+.+++++.++..+ ..... +. .++..++..++. .+. ....+...
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~------~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~ 117 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAA------GFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLV 117 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357666777888888888889999888887643321 11111 11 111111111111 110 11223344
Q ss_pred HHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 405 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
++.++.+|..+|+...+..+.. .++.|...|-.+..+.+|+.+ |+.+.+++.-
T Consensus 118 ~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~-G~l~~~~vLl 170 (521)
T PRK03612 118 LLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALV-GGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHH-HHHHHHHHHH
Confidence 5567778887777665554322 234667778888888888866 8888887654
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.12 Score=51.42 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=79.1
Q ss_pred cCcccccc---cccHHHHHHcCCChhhhHHH-HHhhhhccccccchhhhccc----ccchHHHHH-HHHHHHHHHHHHHH
Q 037996 4 AGATYLFG---TYSKDIKASLGYDQSTLNLL-GFFKDLGANVGVPSGLLGEI----TPTWFVLLV-GSGMNFAGYLMIWL 74 (535)
Q Consensus 4 ~g~~~~~~---~~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr----~G~r~~~~~-g~~~~~~g~~~~~~ 74 (535)
.|.-+.|+ .|.+++.++.|++....+.+ ..--..+.+++++.|..+|| ||||+..+. +..+.+++..++..
T Consensus 42 ~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~ 121 (498)
T KOG0637|consen 42 AGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGY 121 (498)
T ss_pred HHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhh
Confidence 34445554 46777888999999888874 33344455669999999997 688886554 44445555444433
Q ss_pred HHh--cC-CCC-------hhHHHHHHHHHHhhcChhhHhhhhhhhHhhhc-CCCCcc-hhhhhHHhhhhhHHH
Q 037996 75 AVT--GK-IAK-------PAVWHMCAYICIGANSQNFANTGALVTCVKNF-PESRGN-MIGLLKGFTGLSGAI 135 (535)
Q Consensus 75 ~~~--~~-~~~-------~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~f-p~~rg~-~~g~~~~~~~lg~~i 135 (535)
+.- .. .++ -...++++.-.+.=+....+..++-+.+.+.. ++++-+ +++......++|+.+
T Consensus 122 aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL 194 (498)
T KOG0637|consen 122 AADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL 194 (498)
T ss_pred HhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee
Confidence 200 00 011 11122333333444555566677888888988 443333 888877777777644
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.066 Score=51.21 Aligned_cols=138 Identities=13% Similarity=0.161 Sum_probs=83.1
Q ss_pred HHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHH
Q 037996 346 SLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISE 424 (535)
Q Consensus 346 ~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~ 424 (535)
++..+.++++.+..|.+--.+.| .+..++.++.+..+...+.+... +.+..++..+++..-+....++...-+++
T Consensus 278 Av~tlLGa~~~~~~g~l~i~w~r----~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 278 AVSTLLGAIAALAAGYLNINWNR----WGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred HHHHHHHHHHHHHHHheeeccch----hhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 34455667778888888665533 23345555555555444444443 56778888888887777777787777888
Q ss_pred hhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHH
Q 037996 425 LFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALV 504 (535)
Q Consensus 425 ~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l 504 (535)
....|..|..+|+.....-+-. .++.-.+.|..+.+. +.|.+ ..-|..=|.+.+++.+++..+
T Consensus 354 nL~~e~~gLvFGiNTFvAl~lQ----silT~iVvd~~g~~L-----~ir~Q--------~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFVALILQ----SILTLIVVDDRGLGL-----DIRTQ--------FVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred hhhhhhheeeeehHHHHHHHHH----HhheEEEEcccccCC-----Cccee--------EEEEeehHHHHHHHHHHHHHH
Confidence 8888899998888776554433 334334445422111 01111 222555566777766666543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.031 Score=55.50 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=87.5
Q ss_pred cchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc---------
Q 037996 325 DNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP--------- 395 (535)
Q Consensus 325 ~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--------- 395 (535)
.+.+.+.++.|.+.+-.+..-...-+.+.+-+++.|..+||..-|.. .|+..+.+..+...++++++...
T Consensus 53 sy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 53 SYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred ccccHHHHHcCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 45566669999998888877777777888899999999998655443 34455666666666666654421
Q ss_pred Ccc----hHHHHHH-----HHHhhhcchhhHHHHHHHHhhccCcccc-hhhHHhhhhhhHHHHHhHhHhH
Q 037996 396 FPG----SVYVASV-----IIGFSFGAQLPLIFAIISELFGLKYYST-LFNCGQLASPLGSYILNVKVTG 455 (535)
Q Consensus 396 ~~~----~~~~~~~-----l~g~~~g~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~ig~~i~~p~i~g 455 (535)
+.. ...+... +.-+.........=++..|+...+++-+ +++......++|+.+ | +..|
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL-G-Y~~g 199 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVL-G-YALG 199 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhccee-e-eecc
Confidence 111 1222233 3334445666777789999998777777 899998888999865 6 4444
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.25 Score=50.58 Aligned_cols=47 Identities=6% Similarity=0.106 Sum_probs=39.3
Q ss_pred cchhh-HHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 412 GAQLP-LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 412 g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
....+ +....+.|.+.+++..+-+++...++++|..+ ++.+..++.+
T Consensus 143 ~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~-sg~~~~~~~~ 190 (472)
T TIGR00769 143 SVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIF-SGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34455 67789999999999999999999999999966 8888777664
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0019 Score=62.70 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=3.1
Q ss_pred hhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHH--HHHHHHHHHHHH-h----------ccCcchHHHHHHHHHh
Q 037996 343 SFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTL--VLVLSCIGLLLI-A----------FPFPGSVYVASVIIGF 409 (535)
Q Consensus 343 ~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~--~~~~~~i~~~~~-~----------~~~~~~~~~~~~l~g~ 409 (535)
..+.+++++..+||.+.++.--+ ++ +++++... .=++....+++. . +.+.+..++..+++|+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~-~~----~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~ 260 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWP-GP----SPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF 260 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEec-cc----ccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH
Confidence 35668899999999998875221 11 11122211 111111111111 1 1133556667888899
Q ss_pred hhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHH
Q 037996 410 SFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYI 448 (535)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i 448 (535)
..|-..++.-.+.++..+++++..+-.+....-.+|-.+
T Consensus 261 TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~ 299 (309)
T PF01733_consen 261 TNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFI 299 (309)
T ss_dssp ------HHHH-----------------------------
T ss_pred ccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777888888777777666666555555533
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.029 Score=56.75 Aligned_cols=111 Identities=18% Similarity=0.201 Sum_probs=80.5
Q ss_pred HHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhh
Q 037996 18 KASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICIGA 96 (535)
Q Consensus 18 ~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l~G 96 (535)
.||.+-.+.-.|..+.....+-+. -++++++.+|+|+-+++.+++....+=.+.+.. . .|.|..+-.-+++|
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~-----L--~n~W~vLPieilqg 470 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY-----L--QNPWMVLPIEILQG 470 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH-----h--cCchheeeHHHHHH
Confidence 456665555555444444444444 577899999999999999998887766444322 2 56788888999999
Q ss_pred cChhhHhhhhhhhHhhhcC-CCCcchhhhhHH-hhhhhHHH
Q 037996 97 NSQNFANTGALVTCVKNFP-ESRGNMIGLLKG-FTGLSGAI 135 (535)
Q Consensus 97 ig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~-~~~lg~~i 135 (535)
+..+.+|.+..+++....| +-|..+.++... ..|+|-.+
T Consensus 471 it~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~ 511 (618)
T KOG3762|consen 471 ITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGL 511 (618)
T ss_pred HHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcch
Confidence 9999999999999999886 558888888644 33444333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.039 Score=55.24 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHh---cc-Cc------chHHHHHHHHHhhhcchhhHHHHHHHHhhccC---cccchhhHHhhhhhh
Q 037996 378 LTLVLVLSCIGLLLIA---FP-FP------GSVYVASVIIGFSFGAQLPLIFAIISELFGLK---YYSTLFNCGQLASPL 444 (535)
Q Consensus 378 ~~~~~~~~~i~~~~~~---~~-~~------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~i 444 (535)
+..+.++..+|.+++. .+ .. ..+++++.++++|.|+.=+...+...|.++++ ++...+...+...++
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~ 83 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI 83 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 4566677777766632 22 11 46888899999999999999999999999865 455566777888899
Q ss_pred HHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHH
Q 037996 445 GSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 445 g~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
|+++ ++.+.+++.++.+ |...|.+.++..+++.+..+
T Consensus 84 G~~~-~~~~~~~i~~~~~------------------------~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 84 GSLF-SPTLVPYIQQNYG------------------------WFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHH-HHHCCCHHHHCS-------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHh-hcccchhhccccc------------------------hhhhhhHHHHHHHHHHHHHH
Confidence 9966 8888888876644 99999998888887765443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.043 Score=41.22 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=54.2
Q ss_pred hhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc
Q 037996 321 LTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP 395 (535)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~ 395 (535)
+.+...+|.+.++.++|..+++++.+...++..+|.+...++.++.. +...+..+.+...+..+.+...
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~------~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSR------PRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889998999999999999999999999999999999888742 2244556666667666666654
|
Note that many members are hypothetical proteins. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.21 Score=49.79 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=100.2
Q ss_pred chHHHHhh-cCCCCccchhhHHH-HHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHH
Q 037996 326 NLGQIGES-LGYPTKTIKSFVSL-VSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYV 402 (535)
Q Consensus 326 ~~~~~~~~-~g~~~~~a~~~~~~-~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 402 (535)
..+|+... +|++..+...-.-+ ..=.....-+....+.|.++.| +++....+...+...++... +...+-+
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk------pviil~~~~~i~t~~lll~~~sv~~mq~ 99 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK------PVIILQALSYIITWLLLLFGTSVLAMQL 99 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 45555554 78877665433222 2223455667788899999543 45555555444444444444 4556667
Q ss_pred HHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccccc
Q 037996 403 ASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICI 482 (535)
Q Consensus 403 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (535)
.-+..|...+.- ...++++-...++++.-++.+......-+|.++ +..+ |.+.-+.+
T Consensus 100 ~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~-s~~l-gQllvs~~-------------------- 156 (412)
T PF01770_consen 100 MQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFI-SSLL-GQLLVSFG-------------------- 156 (412)
T ss_pred HHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHhc--------------------
Confidence 777888876663 455677777788899999998888877777755 5444 43333322
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037996 483 GVKCYRLPFIILACVTCFGALVSFILVIRTR 513 (535)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~ 513 (535)
..+|...+.+......+++++++++.+.+|
T Consensus 157 -~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 157 -GVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 235888888877777788888777776554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.5 Score=46.04 Aligned_cols=135 Identities=10% Similarity=0.078 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhch-----hhhhccCCCchHHHHH
Q 037996 306 MLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSE-----GLLAKYKMPRPLMLTL 380 (535)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~D-----r~~~~~~~~r~~~~~~ 380 (535)
+..+.+.+..+. .=.+.+..+|.+.+..|.|-++.+.....+.= ..-.++|.++.| |+||||.+ +. -
T Consensus 33 illLl~LYllQG-iP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksW----vv-p 104 (510)
T KOG3574|consen 33 ILLLLFLYLLQG-IPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSW----VV-P 104 (510)
T ss_pred HHHHHHHHHHcC-CchhHhhhhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccce----ee-e
Confidence 444444444332 22234448899989888877766554333332 224688999999 88877644 22 2
Q ss_pred HHHHHHHHHHHHhc-c------C--cch---HHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHH
Q 037996 381 VLVLSCIGLLLIAF-P------F--PGS---VYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYI 448 (535)
Q Consensus 381 ~~~~~~i~~~~~~~-~------~--~~~---~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i 448 (535)
+..+.....+++.. . + ... .....+++-|..+..--....+...+..+++.|-+......+...|-++
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 22222222222221 1 1 111 1223344555555555556667777777888887776666666666654
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.5 Score=43.70 Aligned_cols=51 Identities=6% Similarity=-0.059 Sum_probs=35.2
Q ss_pred hhhhHHHHHhhhhcc--ccccchhhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 25 QSTLNLLGFFKDLGA--NVGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLA 75 (535)
Q Consensus 25 ~~~~~~~~~~~~~~~--~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~ 75 (535)
+..+.++-+...+.. ++..+..++++|+++.++.-+....+..-..++++.
T Consensus 57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~v 109 (491)
T PF03219_consen 57 AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFV 109 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544444433 247888999999999999888777777766666554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.22 Score=50.48 Aligned_cols=106 Identities=11% Similarity=-0.015 Sum_probs=85.9
Q ss_pred chhh-HHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhhhcchhhHHH
Q 037996 341 IKSF-VSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIF 419 (535)
Q Consensus 341 a~~~-~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~ 419 (535)
++.. .++.....++..++++.+.|+++ .+|.++++........+.+..+|.+.+++..++.|+|.+..+.-..
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~------~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG 124 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLG------PKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQG 124 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhh------HHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccc
Confidence 4444 66777888889999999999994 5588888888887777777778888999999999999998888778
Q ss_pred HHHHHhhccCcccchhhHHhhhhhhHHHHHhHhH
Q 037996 420 AIISELFGLKYYSTLFNCGQLASPLGSYILNVKV 453 (535)
Q Consensus 420 ~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i 453 (535)
.+.+|...++...+..++.-.....+.++ |..+
T Consensus 125 ~ylt~~st~~tie~Nisi~Wai~~~~li~-Ggi~ 157 (461)
T KOG3098|consen 125 GYLTSNSTRETIERNISIFWAIGQSSLII-GGII 157 (461)
T ss_pred eehhhcCChhhHHHHHHHHHHHHHHHHHh-hhHh
Confidence 89999999899999888887777666644 5433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=92.79 E-value=6.3 Score=40.03 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=38.9
Q ss_pred CcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 037996 429 KYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFIL 508 (535)
Q Consensus 429 ~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l 508 (535)
+.....++.+.-.-.+..++ +|.++|.+.+..+ +..+..+.++..+++..+=+++
T Consensus 145 ~~La~~NA~mRRIDL~ckll-aPl~vG~l~t~~s------------------------~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 145 GALARMNATMRRIDLFCKLL-APLFVGLLMTFAS------------------------PVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccC------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555667755 9999999988643 6677777888888887765554
Q ss_pred Hhh
Q 037996 509 VIR 511 (535)
Q Consensus 509 ~~~ 511 (535)
..+
T Consensus 200 l~~ 202 (432)
T PF06963_consen 200 LAR 202 (432)
T ss_pred HHH
Confidence 433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=90.96 E-value=13 Score=34.51 Aligned_cols=20 Identities=5% Similarity=-0.189 Sum_probs=15.6
Q ss_pred CcHHHhhhhHHHHHHHHHHH
Q 037996 295 YTILQALLSIDMLILFVATF 314 (535)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~~ 314 (535)
.+..+.+|+++.|...+.+.
T Consensus 85 ~s~~~~LK~K~tw~w~~~Yg 104 (267)
T PF07672_consen 85 PSYKSILKEKETWKWILIYG 104 (267)
T ss_pred chHHHHHccchHHHHHHHHH
Confidence 46788999999988776554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.59 E-value=8.9 Score=38.23 Aligned_cols=47 Identities=11% Similarity=-0.086 Sum_probs=23.8
Q ss_pred hhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhh
Q 037996 321 LTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLA 368 (535)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~ 368 (535)
+.++...+|+...+-.++. +..+...+.+...+...+.-.+--+...
T Consensus 35 N~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~ 81 (406)
T KOG1479|consen 35 NMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNT 81 (406)
T ss_pred HhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666555532222 4444555555555555555555444443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.7 Score=43.52 Aligned_cols=110 Identities=10% Similarity=-0.007 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcCCC-C---cchhhhhHHhh
Q 037996 56 FVLLVGSGMNFAGYLMIWLAVTGKIA--KPAVWHMCAYICIGANSQNFANTGALVTCVKNFPES-R---GNMIGLLKGFT 129 (535)
Q Consensus 56 ~~~~~g~~~~~~g~~~~~~~~~~~~~--~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp~~-r---g~~~g~~~~~~ 129 (535)
|++++|.++..+|.+++.++...... +.+.+.++++-++.++|.|+.-+....+.+|-|+++ + .....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56789999999998886544322221 122456778888899999999999999999999643 3 33344455556
Q ss_pred hhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 130 GLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 130 ~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.+|+.+...+...+-++..+.+.+.++.+-.+..++
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~ 117 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALI 117 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHH
Confidence 677765443333444344444444444344333333
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=12 Score=39.16 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=59.1
Q ss_pred HHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHH---HHHHHHHHhcCCCChhHHHHHHHHHH
Q 037996 19 ASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAG---YLMIWLAVTGKIAKPAVWHMCAYICI 94 (535)
Q Consensus 19 ~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g---~~~~~~~~~~~~~~~~~~~l~~~r~l 94 (535)
.-+|-+..+.+.+.+.+..+... +.++|++.++.-++... +-..+..++ ..++.... ... ......++..-++
T Consensus 43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~-~~~-~~~~~~~~~~~~~ 119 (521)
T PRK03612 43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAF-AFQ-GLSRLLLYVLVLL 119 (521)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHH
Confidence 34666666666655556666644 67777766433222221 111111111 11111110 110 0111222334455
Q ss_pred hhcChhhHhhhhhhhHhhhcCCCCcchhhhhHHhhhhhHHHHHHHHHHHhc
Q 037996 95 GANSQNFANTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVYLAVYG 145 (535)
Q Consensus 95 ~Gig~g~~~~~~~~~~~~~fp~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~ 145 (535)
.++-.|+..|....+..+...++-|...|-..+...+|+.+.+.+.+.++-
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 677777777776666654333334556666666666777666555554443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.14 E-value=20 Score=34.37 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHh
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVT 454 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~ 454 (535)
+.+.+..+.-|+-.|..+..+.--+.+..++++|--+++...+...+|.++ +..+.
T Consensus 343 ~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~l-A~~la 398 (409)
T KOG3880|consen 343 WIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFL-AGLLA 398 (409)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHH-HHHHh
Confidence 333334444488778777777777777788899999999999988888866 54443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.57 E-value=5.3 Score=37.24 Aligned_cols=122 Identities=13% Similarity=0.100 Sum_probs=69.7
Q ss_pred HHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHH
Q 037996 298 LQALLSIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLM 377 (535)
Q Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 377 (535)
..-+|+..+..+.++...-|..+ .+.-++.+.+|+...+.+.+.....-..++-..+.|-+.||.|||+.- ..
T Consensus 35 FnsFknnyllVyslmmAgDWLQg----PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac---vt 107 (454)
T KOG4332|consen 35 FNSFKNNYLLVYSLMMAGDWLQG----PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC---VT 107 (454)
T ss_pred HHHHhhhHHHHHHHHHhhhhhcC----ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce---ee
Confidence 44556655555555444434332 122234566788777777665544444455556778899999887532 22
Q ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHhhhcchhhHHHH-HHHHhhccC
Q 037996 378 LTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSFGAQLPLIFA-IISELFGLK 429 (535)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~-~~~~~~~~~ 429 (535)
.++..+++++. =-.+.+..+.+..++-|+.....++..-+ ++.|....+
T Consensus 108 ycitYiLsCiT---KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr 157 (454)
T KOG4332|consen 108 YCITYILSCIT---KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKR 157 (454)
T ss_pred ehHHHHHHHHh---hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 22333322221 11234567888899999988888877654 566665333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=85.37 E-value=10 Score=37.98 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=50.0
Q ss_pred hHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCc
Q 037996 352 NYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKY 430 (535)
Q Consensus 352 ~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 430 (535)
..+..+++.++.+|+.. ..+ ..+..+++.+++++.+.. +.+.-++..++.+++.|..=.....+ ...+++.
T Consensus 72 ~l~~Kl~aP~fi~~v~y----~~R--i~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~~- 143 (402)
T PF02487_consen 72 SLLVKLIAPFFIHRVPY----WIR--ILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGKS- 143 (402)
T ss_pred HHHHHHHhHhhhhhccc----hHH--HHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCcc-
Confidence 34455667777787732 122 334555667777776664 44445566667777766654444444 3355532
Q ss_pred ccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 431 YSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 431 ~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
..+-...+.+.++.+ |+...-.+
T Consensus 144 ---~l~~wssGTG~aGl~-Ga~~y~~l 166 (402)
T PF02487_consen 144 ---SLSAWSSGTGGAGLV-GALYYLGL 166 (402)
T ss_pred ---ccccccCCcChhhHH-HHHHHHHH
Confidence 233344444445533 55444333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=83.64 E-value=52 Score=34.19 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=34.0
Q ss_pred HHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhh
Q 037996 417 LIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459 (535)
Q Consensus 417 ~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~ 459 (535)
+....+-|.+..++..+-+++...+.++|..+ +..+..++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~-sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIF-SGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45677888888999999999999999999865 7666666655
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.49 E-value=4.6 Score=42.70 Aligned_cols=154 Identities=16% Similarity=0.219 Sum_probs=96.7
Q ss_pred hcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc----c----
Q 037996 324 IDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF----P---- 395 (535)
Q Consensus 324 ~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----~---- 395 (535)
.+.+.|+....+.+...+......+.-......+++++++|-+- +|-+.+.++.++..++..++.. +
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~-----gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p 132 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL-----GRYFTINIGSLISLLGLFGLTLSAMIPALLP 132 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 34566666777887777887888888778888899999999764 3445566666665555433211 0
Q ss_pred ------------Cc------chHHHHHHHHHhhhcchhhHHHHHHHHhhccC------cccchhhHHhhhhhhHHHHHhH
Q 037996 396 ------------FP------GSVYVASVIIGFSFGAQLPLIFAIISELFGLK------YYSTLFNCGQLASPLGSYILNV 451 (535)
Q Consensus 396 ------------~~------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~ig~~i~~p 451 (535)
.. ..++...-+..+|.|+.-+...+.-.|-++.+ ....-+.......++|.++ +.
T Consensus 133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~-a~ 211 (571)
T KOG1237|consen 133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALL-AQ 211 (571)
T ss_pred ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHH-HH
Confidence 00 12444555666788888888888888888732 2224444455555666644 43
Q ss_pred hHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHH
Q 037996 452 KVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFI 507 (535)
Q Consensus 452 ~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~ 507 (535)
.+.-++-|. .+|...|.+..++..++.++.+.
T Consensus 212 t~~vyiq~~------------------------~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 212 TVLVYIQDN------------------------VGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred HHHHhhhhc------------------------ccceeeccHHHHHHHHHHHHHHc
Confidence 333333232 34888898888888877665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 5e-08
Identities = 53/296 (17%), Positives = 87/296 (29%), Gaps = 80/296 (27%)
Query: 38 GANVGVPSGLLGEITPTWFVLLV------GSGMNFAGYLMIWLAVTGKIAKPA-----VW 86
NV + G+LG TW L V M+F + WL + P +
Sbjct: 150 AKNVLI-DGVLG-SGKTWVALDVCLSYKVQCKMDFKIF---WLNL-KNCNSPETVLEMLQ 203
Query: 87 HMCAYICIGANSQNFA------NTGALVTCVKNFPESRGNMIGLLKGFTGLSGAILTQVY 140
+ I S++ ++ ++ +S+ LL +L V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---------VLLNVQ 254
Query: 141 ----LAVYGNDSKSLILLIGWLPAAISVIFVYTIRIIPVVQHTSHEAKVFYHFLYASIVL 196
+ K ILL + T I + H + V
Sbjct: 255 NAKAWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLD----HHSMTLTP----DEVK 304
Query: 197 ALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAI-----REELAIWNLKKQPPS 251
+L L + + PRE + P ++I R+ LA W+ K
Sbjct: 305 SLLLKYLDC--RPQDLPREVLTTN----------PRRLSIIAESIRDGLATWDNWKH--- 349
Query: 252 EVTVEKPAE-IEPKKEPLPPPDEPKGSTKSCF--LTICDKPPRGEDYTILQALLSI 304
V +K IE L P + + F L++ I LLS+
Sbjct: 350 -VNCDKLTTIIESSLNVLEPAE-----YRKMFDRLSVFP-----PSAHIPTILLSL 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 56/403 (13%), Positives = 97/403 (24%), Gaps = 155/403 (38%)
Query: 187 YHFLYASIVLALFLMVMTILEKVMSFPREAYAA--SATGCIVLLFVPLAIAIREELAIWN 244
Y FL + I ++ S Y +F ++ R +
Sbjct: 91 YKFLMSPI---------KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQP-YLK 139
Query: 245 LKK-----QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSC------------------ 281
L++ +P V ++ GS K+
Sbjct: 140 LRQALLELRPAKNVLIDGVL----------------GSGKTWVALDVCLSYKVQCKMDFK 183
Query: 282 -F-LTI--CDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI-DNLGQIGESL-- 334
F L + C+ P +LQ LL + + I + I L
Sbjct: 184 IFWLNLKNCNSP--ETVLEMLQKLLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 335 -----GYP-----------TKTIKSF-VS---LV-----SIWNYFG----------RVFA 359
Y K +F +S L+ + ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 360 GFV---SEGLLAKY------KMPRPLMLTLVLVLSCIGLLLIAFP--FPGSVYVA----S 404
+ LL KY +PR ++ T LS I + + +V +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 405 VIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYIL--NVKVTGSLY---- 458
II S P + K + L + + + L
Sbjct: 357 TIIESSLNVLEPAEY--------RKMFDRLS------------VFPPSAHIPTILLSLIW 396
Query: 459 -------DHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIIL 494
V +L K + KE +P I L
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKEST------ISIPSIYL 433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 24/183 (13%)
Query: 332 ESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLL 391
E + L G + G++S+ + + + ++ ++ I +
Sbjct: 281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340
Query: 392 IAFPFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNV 451
P + ++IGF + LI EL K T L LG +
Sbjct: 341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 400
Query: 452 KVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIR 511
+ G D G + F+++ + ++ +++I
Sbjct: 401 AIVGYTVDF---------------------FG---WDGGFMVMIGGSILAVILLIVVMIG 436
Query: 512 TRE 514
+
Sbjct: 437 EKR 439
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.9 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.9 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.43 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.33 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.24 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.75 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=275.72 Aligned_cols=382 Identities=14% Similarity=0.093 Sum_probs=255.3
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.++.+.|.+.+++ .+..+.+++.+...++..+ .+++|+++||+|||++++++.++..++.++.++.... . ++++
T Consensus 45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~--~~~~ 120 (451)
T 1pw4_A 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-T--SSIA 120 (451)
T ss_dssp TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-H--SSSS
T ss_pred HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-c--ccHH
Confidence 34556678888899 9999999987777777765 9999999999999999999999999998776551000 1 4678
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.+++.|+++|++.+..++....++.|++| ++|++++|+...+.++|..+.+.+.+.+.....
T Consensus 121 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----------------- 183 (451)
T 1pw4_A 121 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----------------- 183 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 89999999999999999999999999997 679999999988888887665433322221100
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
+++..+.....+.+... + ......++
T Consensus 184 ---------------~w~~~f~~~~~~~~~~~---~-----------------------------~~~~~~~~------- 209 (451)
T 1pw4_A 184 ---------------DWHAALYMPAFCAILVA---L-----------------------------FAFAMMRD------- 209 (451)
T ss_dssp ---------------CSTTCTHHHHHHHHHHH---H-----------------------------HHHHHCCC-------
T ss_pred ---------------cHHHHHHHHHHHHHHHH---H-----------------------------HHHhhccC-------
Confidence 02222221111000000 0 00000010
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
+|++....+ .++.++ +.++ + . +++.+++...++...++.+++|.+|...+..++.......+..
T Consensus 210 ---~~~~~~~~~---~~~~~~--~~~~----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 210 ---TPQSCGLPP---IEEYKN--DYPD----D-Y---NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp ---SSTTTCCCS---CTTTCC--C---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CHhhcCCCC---hhhhcc--cccc----c-c---hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 000000 0000 0 0 0000001111111246788899999888777666555555556
Q ss_pred chHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhh--hhccCCCchHHHHHHHHHHH-HHHHHHhcc---Ccc
Q 037996 326 NLGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGL--LAKYKMPRPLMLTLVLVLSC-IGLLLIAFP---FPG 398 (535)
Q Consensus 326 ~~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~--~~~~~~~r~~~~~~~~~~~~-i~~~~~~~~---~~~ 398 (535)
+.+.+.++ +|+++.+++.+.++..++..+++++.|++.||+ ++| ..+..+..+.. ++.+++... +.+
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR------GATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH------HHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 66777666 799999999999999999999999999999998 543 23333333333 555554433 334
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhh-HHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcc
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPL-GSYILNVKVTGSLYDHQAVKELAKKGMNRSDVK 477 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i-g~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 477 (535)
...+..++.|++.+...+....++.|.+|++++++++|+.+....+ +..+ +|.+.|.+.|..+
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~-~~~~~g~l~~~~g--------------- 411 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA-ASAIVGYTVDFFG--------------- 411 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSC---------------
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC---------------
Confidence 4566677888888888888889999999999999999999999999 9977 9999999998743
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 478 ELICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 478 ~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|++.+++.+++.++.+++.++
T Consensus 412 ---------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 412 ---------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8889999888888887766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=262.83 Aligned_cols=354 Identities=14% Similarity=0.096 Sum_probs=236.6
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
.++.+.|.+++++|+|..+.+++.+...++.. ..+++|+++||+|||++++++.++..++.++.+.. ... ++++.
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~ 119 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA--AEI--MNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--HHT--TCHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc--ccc--ccHHH
Confidence 44567889999999999999998777777775 59999999999999999999999999997776322 222 56899
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVY-GNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~ 165 (535)
+++.|+++|+|.+...+....++.|++| ++|++++++...+.++|..+.+.+...+. ......- .-..
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-------~~~~--- 189 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS-------QDVL--- 189 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC-------HHHH---
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------cccc---
Confidence 9999999999999999999999999997 68999999999998888877654433333 1110000 0000
Q ss_pred HHhhhcccCCCCCC------cchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHH
Q 037996 166 FVYTIRIIPVVQHT------SHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREE 239 (535)
Q Consensus 166 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (535)
-..+++.... .+|+..+..... ...+. .+.. ...+
T Consensus 190 ----~~~~~~~~~~~~~~~~~~w~~~~~~~~~------~~~~~--------------------------~~~~-~~~~-- 230 (438)
T 3o7q_A 190 ----DKMSPEQLSAYKHSLVLSVQTPYMIIVA------IVLLV--------------------------ALLI-MLTK-- 230 (438)
T ss_dssp ----HHSCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH--------------------------HHHH-HHCC--
T ss_pred ----ccCCcchhhhhhhhhhhhHHHHHHHHHH------HHHHH--------------------------HHHH-HHHc--
Confidence 0000000000 001111110000 00000 0000 0000
Q ss_pred HhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhc
Q 037996 240 LAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGS 319 (535)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (535)
.|+.+++ .+ ++++++....+.++.+|+|.+|...+..++....
T Consensus 231 ---------~p~~~~~--------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T 3o7q_A 231 ---------FPALQSD--------------NH--------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA 273 (438)
T ss_dssp ---------CCCCTTT--------------CC--------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred ---------CCccccc--------------cc--------------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 0110000 00 0000011123457788999999888777666555
Q ss_pred hhhhhcchHHH-Hhhc-CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCc
Q 037996 320 SLTAIDNLGQI-GESL-GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFP 397 (535)
Q Consensus 320 ~~~~~~~~~~~-~~~~-g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~ 397 (535)
......+.+.+ .++. |+++.+++...++..++..+++++.|+++||+++| ..+..+.++..++.+++...+.
T Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH------KVLAAYALIAMALCLISAFAGG 347 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHcCC
Confidence 54454555555 6655 99999999999999999999999999999999644 4555666666666655555444
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
....+..++.|++.+...+...++..|.+|++ ++.+.++.. ...+++.+ +|.+.|++.|..
T Consensus 348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~g~l~~~~ 408 (438)
T 3o7q_A 348 HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHHHHHHHHh
Confidence 34455567888999988999999999999865 888888877 56688866 999999999883
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=263.05 Aligned_cols=415 Identities=13% Similarity=0.077 Sum_probs=252.4
Q ss_pred ccccHHHHHHcCC--------ChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcC--
Q 037996 11 GTYSKDIKASLGY--------DQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGK-- 79 (535)
Q Consensus 11 ~~~~~~l~~~~~~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~-- 79 (535)
+...|.++++++. ++.+.+++.+.+.++..+ ++++|+++||+|||++++++.+++.++.++++++..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3456788887743 234577877888888865 89999999999999999999999999987764321110
Q ss_pred ---------CCChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC---
Q 037996 80 ---------IAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN--- 146 (535)
Q Consensus 80 ---------~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~--- 146 (535)
..+++++++++.|+++|+|.|...+.+..++.|+.| ++||+..++...+..+|..+...+.......
T Consensus 112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (491)
T 4gc0_A 112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA 191 (491)
T ss_dssp SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence 012579999999999999999999999999999997 6799999998888766665544333333221
Q ss_pred -----ChhHHHHHHHHHHHHHHHHHHhhhcccCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhh
Q 037996 147 -----DSKSLILLIGWLPAAISVIFVYTIRIIPVVQH-TSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAAS 220 (535)
Q Consensus 147 -----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (535)
.+|++......+|.+..++..+..++.|+... +.++++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~-------------------------------- 239 (491)
T 4gc0_A 192 SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI-------------------------------- 239 (491)
T ss_dssp TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH--------------------------------
T ss_pred ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh--------------------------------
Confidence 23344444444454444443333332221100 0000000000
Q ss_pred hhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHh
Q 037996 221 ATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQA 300 (535)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (535)
.++...+...+ ++ ..+..+.. .+.+ +.......
T Consensus 240 ---------------l~~~~~~~~~~----~~-------------------------~~~~~~~~-~~~~--~~~~~~~~ 272 (491)
T 4gc0_A 240 ---------------LRKIMGNTLAT----QA-------------------------VQEIKHSL-DHGR--KTGGRLLM 272 (491)
T ss_dssp ---------------HHHHHHHHHHH----HH-------------------------HHHHHHHH-HHHH--HHTTHHHH
T ss_pred ---------------HHHhcCCchhH----HH-------------------------HHHHHHHH-Hhhh--hhhhHHHH
Confidence 00000000000 00 00000000 0000 00011222
Q ss_pred hhhHHHHHHH-HHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHH
Q 037996 301 LLSIDMLILF-VATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLT 379 (535)
Q Consensus 301 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 379 (535)
++.+...... ...+........+..+.+++.+..+.+..+......+.++...++.++++++.||+||| ..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr------~~~~ 346 (491)
T 4gc0_A 273 FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK------PLQI 346 (491)
T ss_dssp SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH------HHHH
T ss_pred hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc------chhc
Confidence 2333333332 23333344444555677777788887777777777788899999999999999999655 4444
Q ss_pred HHHHHHHHHHHHHhc---c-Cc-chHHHHHHHHHhhhc-chhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhH
Q 037996 380 LVLVLSCIGLLLIAF---P-FP-GSVYVASVIIGFSFG-AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKV 453 (535)
Q Consensus 380 ~~~~~~~i~~~~~~~---~-~~-~~~~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i 453 (535)
.+...+.++.+.+.. . .. ....+...+...+.+ ...++...+.+|.+|++.|+++.|+.+..+.+++++ ++.+
T Consensus 347 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~ 425 (491)
T 4gc0_A 347 IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWT 425 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTH
T ss_pred cchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 555555554443321 1 22 222223333322222 233566789999999999999999999999999977 8888
Q ss_pred hHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhcccc
Q 037996 454 TGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENAE 529 (535)
Q Consensus 454 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 529 (535)
.+.+.+...... ...+...|++.+++++++.++.+++.+|+|++..|++++.++++.+
T Consensus 426 ~p~l~~~~~~~~------------------~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 426 FPMMDKNSWLVA------------------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHCHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHHHHHHHHHh------------------hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 877765432111 1125567888899999999888889999999988888886655433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=237.94 Aligned_cols=415 Identities=11% Similarity=0.020 Sum_probs=236.4
Q ss_pred ccHHHHHH-----cCCChhhhHHHHHhhhhcccc-ccchhhhccc-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH
Q 037996 13 YSKDIKAS-----LGYDQSTLNLLGFFKDLGANV-GVPSGLLGEI-TPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV 85 (535)
Q Consensus 13 ~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 85 (535)
..++++++ +|+|..+.+++.+...++..+ .+++|+++|| +|||+++.++.++..++.+++++ . +++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-----~--~~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-----P--FGA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----C--CST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----h--hhH
Confidence 34455666 999999999977777777754 9999999999 89999999999999988765532 2 457
Q ss_pred HHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CC--CcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 037996 86 WHMCAYICIGANSQNFANTGALVTCVKNFP-ES--RGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAI 162 (535)
Q Consensus 86 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~--rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~ 162 (535)
+.+++.|+++|+|.+...+....++.|++| ++ |++++++...+..+|..+.+.+.+.+.+...|++.+....+..+.
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 889999999999999999999999999996 56 677788787888888877666665555433333333333222222
Q ss_pred HHHHHhhhccc--CCC---CCCc-chhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhh
Q 037996 163 SVIFVYTIRII--PVV---QHTS-HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAI 236 (535)
Q Consensus 163 ~~~~~~~~~~~--~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (535)
.++..+..... +++ +.+. ..++.-.....+. .........++. ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------------~~l~~~~~~~~~-----~~ 239 (491)
T 4aps_A 189 GLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVS------------------------LAVAGFIAIIVV-----MN 239 (491)
T ss_dssp HHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCC------------------------CCCHHHHHHHHH-----HH
T ss_pred HHHHHHHhCcccccccccCCCCccccchhHHHHHHHH------------------------HHHHHHHHHHHH-----HH
Confidence 22222221111 100 0000 0000000000000 000000000000 00
Q ss_pred hHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhh
Q 037996 237 REELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGG 316 (535)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (535)
.. +..+.+... . ..................+++.. .. .+..+....+..++..+..
T Consensus 240 ~~----------~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~ 295 (491)
T 4aps_A 240 LV----------GWNSLPAYI-N---------LLTIVAIAIPVFYFAWMISSVKV-TS---TEHLRVVSYIPLFIAAVLF 295 (491)
T ss_dssp HH----------SSCCTTHHH-H---------HHHHHHHHHHHHHHHHHC----------------CTTHHHHHHHHHHH
T ss_pred hc----------cCcccccch-h---------hhhHHHHHHHHHHHHHHhhcccc-cH---HHHHHHHHHHHHHHHHHHH
Confidence 00 000000000 0 00000000000000000000000 00 0111112223333333322
Q ss_pred hhchhhhhcchHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-
Q 037996 317 LGSSLTAIDNLGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF- 394 (535)
Q Consensus 317 ~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~- 394 (535)
+..........+.+.++ .+.+..+.+...++..+...++.++.|+++||++||+.. +...+..+.++..++.+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
T 4aps_A 296 WAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGLMFAGLSFLLMAIP 374 (491)
T ss_dssp HHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHHHHHHH
Confidence 22222233344444444 577667888888999999999999999999999887542 233344555555555444332
Q ss_pred ---------cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhH
Q 037996 395 ---------PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKE 465 (535)
Q Consensus 395 ---------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~ 465 (535)
.+.+...+..++.|++.+...+....++.|.+|++.++++.|+.+....+|..+ +|.+.+.+.+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~~~~~~~----- 448 (491)
T 4aps_A 375 GALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLVTLYNAK----- 448 (491)
T ss_dssp HHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHGGGGGGS-----
T ss_pred HHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc-----
Confidence 133456667788899888888888999999999999999999999999999977 99998887664
Q ss_pred hhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 466 LAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
++...|.+++++++++.++.+++.++.++
T Consensus 449 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 449 --------------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp --------------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 16677888888777777666655554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-27 Score=233.85 Aligned_cols=326 Identities=14% Similarity=0.047 Sum_probs=223.5
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
+....|.+.+++|.|..+.+++.+...++.. ..++.|+++||+|||+++.++.++..++.++.+++ ++++.+
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l 91 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLTVL 91 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHHHH
Confidence 4455678899999999999998777777775 49999999999999999999999999998777554 678999
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
++.|+++|++.+...+....++.|++| |+|++++++...+.++|..+.+.+...+.+...
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------------------- 152 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN------------------- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-------------------
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-------------------
Confidence 999999999999999999999999996 789999999998888887665433222211111
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
++..+.... +..++.. +.....
T Consensus 153 --------------~~~~~~~~~-------~~~~~~~-------------------------~~~~~~------------ 174 (375)
T 2gfp_A 153 --------------WRACYLFLL-------VLCAGVT-------------------------FSMARW------------ 174 (375)
T ss_dssp --------------HHHHHHHHH-------HHHHHHH-------------------------CCCCCS------------
T ss_pred --------------HHHHHHHHH-------HHHHHHH-------------------------HHHHHH------------
Confidence 111111000 0000000 000000
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
-|+++++ + + ++++ ...+.++.+|+|+++...+..++.......+..+.
T Consensus 175 -~~~~~~~-------------~--~------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2gfp_A 175 -MPETRPV-------------D--A------------PRTR----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACS 222 (375)
T ss_dssp -SCCCSTT-------------T--C------------CCCC----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CcccCCC-------------C--c------------cccc----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 0 0000 11123577889999888776665544444444444
Q ss_pred HHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHH-HHHHHH--HHhc---cCcchH
Q 037996 328 GQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVL-SCIGLL--LIAF---PFPGSV 400 (535)
Q Consensus 328 ~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~-~~i~~~--~~~~---~~~~~~ 400 (535)
+.+.++ .|.++.+++.+.+...++..+++++.+++.||+++ +.. .+... ...+.. .... .+.+..
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST------LMW--QSVICCLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------HHH--HHHHHHHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHhhhccccHHHH
Confidence 444444 78888889999999999999999999999999853 122 22221 111111 1111 133445
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
++..++.|++.+...+....++.|.+| +++|++.|+.+....++..+ +|.+.|.+.+..
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~ 353 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV-LASLSAMLPQTG 353 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-CSTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Confidence 567778889888888888999999998 89999999999999999977 999999987763
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-24 Score=216.33 Aligned_cols=362 Identities=12% Similarity=0.039 Sum_probs=210.5
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHH
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV-WHMC 89 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~l~ 89 (535)
....++++++|+|..+.+++.+...++.. .++++|+++||+|||++++++.+++.++...... .... +.. ..+.
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~ 104 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI--FIFG--PLLQYNIL 104 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHH--HTHH--HHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHH
Confidence 33344677899999999997666666665 4999999999999999999988876553211110 0000 011 1234
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC---CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP---ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp---~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
..+++.|++.+..++.....+.++.+ ++|+.+.|.......+|..+.+.+.+.+.+.+
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~------------------- 165 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN------------------- 165 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 56777788877776666665666653 35688888876666677666543322221111
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
++..+..... .. ....++ ....
T Consensus 166 ---------------~~~~f~~~~~----~~------------------------~~~~~~------~~~~--------- 187 (417)
T 2cfq_A 166 ---------------NQFVFWLGSG----CA------------------------LILAVL------LFFA--------- 187 (417)
T ss_dssp ---------------SHHHHTTTTT----TT------------------------TTHHHH------SCSS---------
T ss_pred ---------------hhHHHHHHHH----HH------------------------HHHHHH------HHHc---------
Confidence 1111110000 00 000000 0000
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDN 326 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
+|++++..+ ++ +.+ + .++++......++.+|+|++|...+..+........+..+
T Consensus 188 --~~~~~~~~~----~~-----~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2cfq_A 188 --KTDAPSSAT----VA-----NAV-------------G-ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQ 242 (417)
T ss_dssp --CCCCSCSSC----SS-----SSS-------------S-SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --Ccccccccc----cc-----ccc-------------c-cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 000000000 00 000 0 0000001123467788898887665543332222222223
Q ss_pred hHHHHhh-cC---CCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 327 LGQIGES-LG---YPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 327 ~~~~~~~-~g---~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.+.+.++ ++ .+....+...++..++..++.++.|+++||+++| ..+..+.++.+++.+.+... +.+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK------NALLLAGTIMSVRIIGSSFATSALEVV 316 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH------HHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH------HHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4434333 23 1233446667777788899999999999999654 34445556666655555443 334455
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHH-hhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCG-QLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
+...+.+++.+...+....++.|.+|++.+|++++.. +....+|+.+ +|.+.|++.|..+
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-gp~l~G~l~~~~g------------------ 377 (417)
T 2cfq_A 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG------------------ 377 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-HTHHHHTHHHHSH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-hhhhHHHHHHhcC------------------
Confidence 5555667666666666678999999999999999995 8888899977 9999999988643
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
|+..|.+++++.+++.++.+++.+
T Consensus 378 ------~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 378 ------FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ------cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 778888888888877766554443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=211.21 Aligned_cols=124 Identities=7% Similarity=-0.076 Sum_probs=100.2
Q ss_pred ccHHHHHHcC------CChhhhHHHHHhhhhccc-cccchhhhcccc-cchHHHHHHHHHHHHHHHHHHHHHhcCCCCh-
Q 037996 13 YSKDIKASLG------YDQSTLNLLGFFKDLGAN-VGVPSGLLGEIT-PTWFVLLVGSGMNFAGYLMIWLAVTGKIAKP- 83 (535)
Q Consensus 13 ~~~~l~~~~~------~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~- 83 (535)
..+.+.+++| ++..+.+++.+.+.++.. ..+++|+++||+ |||+++.++.++..++.++.+++ +
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 107 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------EH 107 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------SS
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------cc
Confidence 3455778899 999999997777777775 489999999999 99999999999988887765432 3
Q ss_pred hHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhh---hHHhhhhhHHHHHHHHHHH
Q 037996 84 AVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGL---LKGFTGLSGAILTQVYLAV 143 (535)
Q Consensus 84 ~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~---~~~~~~lg~~i~~~~~~~~ 143 (535)
+++.+++.|++.|++.+...+....++.|++| ++|+++.+. ...+.++|..+.+.+.+.+
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999997 578887776 6666777776655443333
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.8e-14 Score=141.39 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHH
Q 037996 303 SIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVL 382 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 382 (535)
.+.++..++..+........+....+.+.+++ .++.+.+++.++..++..++.+++|+++||+||| ..+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHHHH
Confidence 34444444444443333333444567777788 8999999999999999999999999999999654 5666777
Q ss_pred HHHHHHHHHHhc----c-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 383 VLSCIGLLLIAF----P-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 383 ~~~~i~~~~~~~----~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
++.+++.++... . +.+.+++..++.|++.+...+...+++.|.+|+++|+.+.|+......+|..+ +|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 777777776655 4 66788888999999999999999999999999999999999999999999977 99999888
Q ss_pred hhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 458 YDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
.+.. ++|+..|++.+++.++..++..+..++.
T Consensus 179 ~~~~-----------------------g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 179 MAWF-----------------------NDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHHT-----------------------CCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7652 2389999998888877666655554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-13 Score=137.30 Aligned_cols=174 Identities=18% Similarity=0.211 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhhhchhhhh-cchHHHHhh-----cCCCCccchhhHHHHHHhhHHHHHHhhhhchh-hhhccCCCchHH
Q 037996 305 DMLILFVATFGGLGSSLTAI-DNLGQIGES-----LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEG-LLAKYKMPRPLM 377 (535)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~~ 377 (535)
.+|...+..++.....+... ...+++.+. +|.++.+.+++.+...++..++++++|+++|| +||| ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~~ 87 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------PA 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------HH
Confidence 44555544443333333332 334444445 89999999999999999999999999999999 8644 56
Q ss_pred HHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCc--ccchhhHHhhhhhhHHHHHhHhHh
Q 037996 378 LTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKY--YSTLFNCGQLASPLGSYILNVKVT 454 (535)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~ig~~i~~p~i~ 454 (535)
+..+.++..++.+++... +.+.+++..++.|++.+...+...+++.|.+|+++ |+.+++..+....+|..+ +|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~ 166 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence 677777777777776655 56778888999999999999999999999999988 778888888999999976 99999
Q ss_pred HhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 455 GSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 455 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
+.+.+..+ |+..|++.++..+++.++.++..
T Consensus 167 ~~l~~~~g------------------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 167 GAAQEAAG------------------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHSC------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh------------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99988643 99999988777776665554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=135.24 Aligned_cols=129 Identities=19% Similarity=0.045 Sum_probs=111.8
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHH---hcc-Ccc
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLI---AFP-FPG 398 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~---~~~-~~~ 398 (535)
.....+.+.+++|.++.+.+++.+...++..++.+++|+++||+||| ..+..+.++.+++.++. ... +.+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLYALGAALFWPAAEIMNYT 118 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHHHHHHHHHHhccccccHH
Confidence 44457778888999999999999999999999999999999999654 56667777777776665 443 567
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhh
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLY 458 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~ 458 (535)
.+++..++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..+ +|.+.+.+.
T Consensus 119 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 177 (438)
T 3o7q_A 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999977 999999887
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=130.01 Aligned_cols=158 Identities=10% Similarity=0.083 Sum_probs=126.5
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
+....+.+.+++|.++.+.++..+...++..++.++.|+++||++||+. +..+.++..++.+..... +.+.++
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV------ILVGMSIFMLATLVAVTTSSLTVLI 92 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4445666778889999999999999999999999999999999987653 334555555555554443 566777
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+....++.|.+|+++|+++.++.+....+|..+ +|.+.+.+.+..+
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------- 152 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN------------------- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH-------------------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc-------------------
Confidence 88889999999999999999999999999999999999999999977 9999999988644
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|.+.+++.++..++..+..+|
T Consensus 153 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 153 -----WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 8999988877776655534333333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=125.88 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhhhhchhhhh-cchHHHHhhcC------CCCccchhhHHHHHHhhHHHHHHhhhhchhh-hhccCCCch
Q 037996 304 IDMLILFVATFGGLGSSLTAI-DNLGQIGESLG------YPTKTIKSFVSLVSIWNYFGRVFAGFVSEGL-LAKYKMPRP 375 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g------~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~-~~~~~~~r~ 375 (535)
+.+|.+++..++.....+... ..++++.+++| +++.+++++.+...++..++.+++|+++||+ |+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------ 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------ 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 334555444443333333333 33445556678 9999999999999999999999999999999 865
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhH---HhhhhhhHHHHHh
Q 037996 376 LMLTLVLVLSCIGLLLIAFP--FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNC---GQLASPLGSYILN 450 (535)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~ig~~i~~ 450 (535)
..+..+.++..++.+++... +.+.+++..++.|++.+...+...+++.|.+|+++|++..+. .+....+|..+ +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 34555666666666655543 456677888899999999999999999999999999876666 88888999976 9
Q ss_pred HhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHH
Q 037996 451 VKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 451 p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
|.+.+.+.+..+ |+..|.+.+++.+++.++.+
T Consensus 165 ~~~~~~l~~~~g------------------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKNFG------------------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHTSC------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999998877533 89999888877766655443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-09 Score=108.52 Aligned_cols=112 Identities=20% Similarity=0.146 Sum_probs=91.4
Q ss_pred cchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-------------------cCcchH
Q 037996 340 TIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-------------------PFPGSV 400 (535)
Q Consensus 340 ~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-------------------~~~~~~ 400 (535)
..+++.+.+.++.++|.+++|+++||+||| ..+.++.++..++.++.+. .+.+.+
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRR------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence 356778888999999999999999999554 6677777777777666542 245568
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLY 458 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~ 458 (535)
++..++.|++.|...+..+.++.|..|+++|+...++......+|.++ ++.+.....
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~~ 186 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhhc
Confidence 889999999999999999999999999999999999999988888855 655544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-09 Score=107.88 Aligned_cols=152 Identities=12% Similarity=0.112 Sum_probs=93.1
Q ss_pred hhhhHHHHHHHHHHHhhhhchhhhhcchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHH
Q 037996 300 ALLSIDMLILFVATFGGLGSSLTAIDNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLML 378 (535)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 378 (535)
.+|+|++|......+.............+.+.+ +.|+++.+.+++.+...++..++++++|+++||+|||+ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~------~l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK------YL 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC------HH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HH
Confidence 578899998877665544433334445555444 57999999999999999999999999999999998764 22
Q ss_pred HHHHHHHHH---HHHHHhccC--cchHHHHHHHHHhhhcc----hhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHH
Q 037996 379 TLVLVLSCI---GLLLIAFPF--PGSVYVASVIIGFSFGA----QLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYIL 449 (535)
Q Consensus 379 ~~~~~~~~i---~~~~~~~~~--~~~~~~~~~l~g~~~g~----~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~ 449 (535)
..+..+..+ ......... .........+.+++.+. ..+....+..+. +++++..+|.......+|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~- 153 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL- 153 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence 333332222 111111110 01112222232333332 233333333332 246788888888888888866
Q ss_pred hHhHhHhhhhh
Q 037996 450 NVKVTGSLYDH 460 (535)
Q Consensus 450 ~p~i~g~l~~~ 460 (535)
+|.+.+++.+.
T Consensus 154 ~~~l~~~l~~~ 164 (417)
T 2cfq_A 154 GASIVGIMFTI 164 (417)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.49 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.94 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-32 Score=277.40 Aligned_cols=386 Identities=13% Similarity=0.104 Sum_probs=250.5
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
.++...|.++ |+|+|.+|++++.+.+.++..+ .+++|+++||+|||+++.++.++..++.++.+++.. .. ++++.
T Consensus 43 ~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~ 118 (447)
T d1pw4a_ 43 NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--AT-SSIAV 118 (447)
T ss_dssp SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH--HH-SSSSH
T ss_pred HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccch--hh-hhHHH
Confidence 4566667765 6899999999987777777754 999999999999999999999999888776643311 11 24678
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN--DSKSLILLIGWLPAAISV 164 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~ 164 (535)
+++.|++.|++.|..++....++.+++| ++||+++|+...+.++|..+.+.+....... +|++.++..+...++..+
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 198 (447)
T d1pw4a_ 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 198 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHH
Confidence 8999999999999999999999999997 5799999999888888876654333222211 111111111111111111
Q ss_pred HHHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhh
Q 037996 165 IFVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWN 244 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
+.....+.
T Consensus 199 ~~~~~~~~------------------------------------------------------------------------ 206 (447)
T d1pw4a_ 199 FAFAMMRD------------------------------------------------------------------------ 206 (447)
T ss_dssp HHHHHCCC------------------------------------------------------------------------
T ss_pred HHHHhccc------------------------------------------------------------------------
Confidence 10000000
Q ss_pred cCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhh
Q 037996 245 LKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
.|++..... +++.+. +.++ + .+++.+++...++...++.++++.+|......++.........
T Consensus 207 ----~~~~~~~~~----~~~~~~-~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (447)
T d1pw4a_ 207 ----TPQSCGLPP----IEEYKN-DYPD----D----YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGIL 269 (447)
T ss_dssp ----SSTTTCCCS----CTTTCC-C---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhhcccch----hhhhhh-hccc----c----hhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcch
Confidence 011000000 000000 0000 0 0000011111122345667888999888777666555555555
Q ss_pred cchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc---CcchH
Q 037996 325 DNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP---FPGSV 400 (535)
Q Consensus 325 ~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~---~~~~~ 400 (535)
.+.+.+.+ ..+.+..+.+...++..+.+.++++++|+++||+++++ +.........+..++...+... +.+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
T d1pw4a_ 270 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN---RGATGVFFMTLVTIATIVYWMNPAGNPTVD 346 (447)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred hhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc---cccccchhHHHHHHHHHHHHhcccccHHHH
Confidence 45555544 56888899999999999999999999999999997663 3333333333333333332222 33455
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
.+..++.|++.+...+....++.|.+|++.+|++.|+.+....+++.+.+|.+.|++.|..+
T Consensus 347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g------------------ 408 (447)
T d1pw4a_ 347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG------------------ 408 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------
Confidence 56677778888888888889999999999999999999998888655558999999998844
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
|+..|.++.++.+++.++..++..++++
T Consensus 409 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 409 ------WDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7888888888888877766666544444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=8.4e-24 Score=210.05 Aligned_cols=364 Identities=12% Similarity=0.047 Sum_probs=212.7
Q ss_pred HHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037996 16 DIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHMCAYICI 94 (535)
Q Consensus 16 ~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~r~l 94 (535)
++++++|+|.+|++++.+...++.. ..+++|+++||+|||++++++.....++..+..+. .... ......+..+.+
T Consensus 33 ~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~ 109 (417)
T d1pv7a_ 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF--IFGP-LLQYNILVGSIV 109 (417)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH--THHH-HHHTTCHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh--hhhh-hHHHHHHHHHHH
Confidence 4678899999999998777777775 59999999999999999999988888776655433 1110 112223466677
Q ss_pred hhcChhhHhhhhhhhHhhhc-C--CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhhc
Q 037996 95 GANSQNFANTGALVTCVKNF-P--ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFVYTIR 171 (535)
Q Consensus 95 ~Gig~g~~~~~~~~~~~~~f-p--~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 171 (535)
.+.+.+...........+.. + +++.+..+......+.+..+.+.+...+....+++..........+..++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 187 (417)
T d1pv7a_ 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFA-- 187 (417)
T ss_dssp TTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred hhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHH--
Confidence 77777666655555554444 2 245556666555554444333222111111111111111110000000000000
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCCCCCC
Q 037996 172 IIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKKQPPS 251 (535)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (535)
.+ +++.
T Consensus 188 ----------------------------------------------------------------~~----------~~~~ 193 (417)
T d1pv7a_ 188 ----------------------------------------------------------------KT----------DAPS 193 (417)
T ss_dssp ----------------------------------------------------------------CC----------CSCS
T ss_pred ----------------------------------------------------------------hc----------cccc
Confidence 00 0000
Q ss_pred CcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcchHHHH
Q 037996 252 EVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQIG 331 (535)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (535)
+.++ + ++++++++........+.++++..+......................+.
T Consensus 194 ~~~~-~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (417)
T d1pv7a_ 194 SATV-A-------------------------NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFF 247 (417)
T ss_dssp SSCS-S-------------------------HHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhh-h-------------------------hhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccc
Confidence 0000 0 0000000111111223333444433333322222111111111122221
Q ss_pred h----hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHH
Q 037996 332 E----SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVYVASVI 406 (535)
Q Consensus 332 ~----~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l 406 (535)
. +.+.+....+.......++..++..+.+++.||.++ +..+..+.++..++.+.+... +.+..++..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (417)
T d1pv7a_ 248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG------KNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321 (417)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred cccccccccchhhhcccccccccccccchhhhhhhhccccc------ccchhhhHHHHHHhhhccccccccchhhHHHHH
Confidence 2 122333445566777788889999999999999854 355666667777766666554 56677778888
Q ss_pred HHhhhcchhhHHHHHHHHhhccCcccchhhHH-hhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccccccc
Q 037996 407 IGFSFGAQLPLIFAIISELFGLKYYSTLFNCG-QLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVK 485 (535)
Q Consensus 407 ~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (535)
.|++.+...+...+++.|.+|++.+++++|+. +....+|..+ +|.+.|++.|+.+
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-~~~~~G~l~~~~g----------------------- 377 (417)
T d1pv7a_ 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG----------------------- 377 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC-----------------------
Confidence 89999999999999999999999999999986 5566788866 9999999999854
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 037996 486 CYRLPFIILACVTCFGALVSFILVIRTREF 515 (535)
Q Consensus 486 ~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~ 515 (535)
|+.+|.+++++.+++.++..++.+++++.
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 378 -FQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 88899999888888887777776655553
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=7.7e-14 Score=139.30 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=125.2
Q ss_pred hHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-----cCcchHH
Q 037996 327 LGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-----PFPGSVY 401 (535)
Q Consensus 327 ~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ 401 (535)
.|+ .++.|+++.+.+++.+.+.++..++.+++|+++||+||| ..+..+.++.+++.++... .+...++
T Consensus 48 ~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (447)
T d1pw4a_ 48 MPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120 (447)
T ss_dssp HHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHCHHHHSSSSHHH
T ss_pred HHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHHHHHHHHhhccccchhhhhHHHHH
Confidence 344 467899999999999999999999999999999999654 5666777777776665543 2456788
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+....++.|.+|+++|+.+.|+.+....+|..+ +|.+.+...+.
T Consensus 121 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~~~--------------------- 178 (447)
T d1pw4a_ 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAW--------------------- 178 (447)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHH---------------------
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhh-hhhhhhhHhhh---------------------
Confidence 88899999999999999999999999999999999999999999976 88888777665
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
.++|+..|++.+.+.++..++.+.+.++.
T Consensus 179 --~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 179 --FNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp --TCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred --hhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 33488888888877777666665554433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=8.8e-10 Score=107.31 Aligned_cols=154 Identities=10% Similarity=0.071 Sum_probs=94.4
Q ss_pred hhhhHHHHHHHHHHHhhhhchhhhhcchH-HHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHH
Q 037996 300 ALLSIDMLILFVATFGGLGSSLTAIDNLG-QIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLML 378 (535)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 378 (535)
.+|||++|.+.+.++.............+ ++.++.|.++.+.+++.++..++..++++++|+++||+|||+ .+
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~------~l 76 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK------YL 76 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT------HH
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH------HH
Confidence 57999999998877655443333333444 455567999999999999999999999999999999998663 33
Q ss_pred HHHHHHHHHHHHHHhcc-C----cchHHHHHHHHHhhhcchhhHHHHHHHHhhc--cCcccchhhHHhhhhhhHHHHHhH
Q 037996 379 TLVLVLSCIGLLLIAFP-F----PGSVYVASVIIGFSFGAQLPLIFAIISELFG--LKYYSTLFNCGQLASPLGSYILNV 451 (535)
Q Consensus 379 ~~~~~~~~i~~~~~~~~-~----~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~ig~~i~~p 451 (535)
..+.....++...+... + .....+...+.+.+.+...........+..+ .+.+....+........+..+ +|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (417)
T d1pv7a_ 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-GA 155 (417)
T ss_dssp HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccc-cc
Confidence 34444444443333322 1 1222333333333333333333222222222 234455666666667777755 88
Q ss_pred hHhHhhhhh
Q 037996 452 KVTGSLYDH 460 (535)
Q Consensus 452 ~i~g~l~~~ 460 (535)
.+.+.+.+.
T Consensus 156 ~~~~~l~~~ 164 (417)
T d1pv7a_ 156 SIVGIMFTI 164 (417)
T ss_dssp HHHHHHHHH
T ss_pred ccccccccc
Confidence 888887765
|